Y89_6197 fa31aa7074261b3504dbdc9a8a18563f 433 SUPERFAMILY SSF53756 82 420 1.1E-18 T 31-10-2018 Y89_6197 fa31aa7074261b3504dbdc9a8a18563f 433 Gene3D G3DSA:3.40.50.2000 200 420 2.1E-23 T 31-10-2018 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 26 4.4E-10 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 160 268 6.8E-18 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 279 451 2.7E-23 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 478 590 2.1E-29 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 SUPERFAMILY SSF47203 284 456 1.61E-46 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 45 155 1.7E-12 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Gene3D G3DSA:1.10.540.10 34 157 1.2E-16 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Gene3D G3DSA:1.20.140.10 284 454 1.8E-46 T 31-10-2018 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 SUPERFAMILY SSF56645 39 276 9.95E-56 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_5874 ed366c94bb5fe4ed88d68f64ed0116eb 596 Gene3D G3DSA:2.40.110.10 158 283 1.5E-27 T 31-10-2018 Y89_3381 174cb0343b298d09c01dbed7fd9118d0 365 SUPERFAMILY SSF55729 1 146 4.12E-33 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3381 174cb0343b298d09c01dbed7fd9118d0 365 Gene3D G3DSA:3.40.630.30 1 158 1.3E-34 T 31-10-2018 Y89_3381 174cb0343b298d09c01dbed7fd9118d0 365 Pfam PF00583 Acetyltransferase (GNAT) family 15 125 1.9E-16 T 31-10-2018 IPR000182 GNAT domain Y89_3381 174cb0343b298d09c01dbed7fd9118d0 365 Pfam PF11814 Peptidase_C39 like family 159 361 2.0E-91 T 31-10-2018 IPR021770 Protein of unknown function DUF3335 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 64 273 1.1E-25 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF47384 692 776 1.43E-17 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00388 709 775 8.3E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 577 692 1.7E-12 T 31-10-2018 IPR000014 PAS domain Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF47226 1057 1182 5.23E-18 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF52172 956 1076 1.57E-33 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.30.450.20 560 698 1.3E-18 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF00072 Response regulator receiver domain 960 1074 3.1E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 300 516 6.9E-31 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.40.190.10 384 479 3.0E-59 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF08448 PAS fold 583 690 8.3E-13 T 31-10-2018 IPR013656 PAS fold-4 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF53850 48 274 2.55E-32 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.40.190.10 46 271 4.3E-47 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00387 822 937 8.3E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 823 935 2.3E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00448 958 1074 2.9E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00091 574 642 0.001 T 31-10-2018 IPR000014 PAS domain Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:1.20.120.160 1100 1205 2.4E-13 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF00512 His Kinase A (phospho-acceptor) domain 709 775 1.9E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00062 56 275 9.7E-18 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SMART SM00062 298 520 8.0E-26 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.40.50.2300 950 1075 1.0E-35 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Pfam PF01627 Hpt domain 1121 1178 9.6E-9 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.40.190.10 141 234 4.3E-47 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:1.10.287.130 699 776 4.8E-21 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 863 877 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 897 915 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 881 891 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 921 934 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF55785 561 687 9.77E-18 T 31-10-2018 IPR035965 PAS domain superfamily Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF55874 765 935 5.11E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 SUPERFAMILY SSF53850 292 519 7.5E-39 T 31-10-2018 Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.30.565.10 777 940 9.5E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1077 78277c9fb2f7d4672afe7a71a7c0bbf0 1212 Gene3D G3DSA:3.40.190.10 289 516 3.0E-59 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 TIGRFAM TIGR00746 arcC: carbamate kinase 1 301 9.9E-139 T 31-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 Pfam PF00696 Amino acid kinase family 1 283 1.2E-25 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PIRSF PIRSF000723 1 302 1.1E-111 T 31-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 Gene3D G3DSA:3.40.1160.10 1 302 1.5E-114 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 103 122 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 151 170 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 174 192 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 206 221 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 257 272 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 41 60 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 PRINTS PR01469 Bacterial carbamate kinase signature 71 89 2.6E-70 T 31-10-2018 Y89_5859 b21b6b6ed6d833f3872ad64b7df1c877 310 SUPERFAMILY SSF53633 1 300 3.8E-78 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5578 f6236ce34ea940ee76336002b721d077 310 Gene3D G3DSA:3.30.1780.10 8 309 1.4E-83 T 31-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Y89_5578 f6236ce34ea940ee76336002b721d077 310 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 49 309 1.2E-61 T 31-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y89_5578 f6236ce34ea940ee76336002b721d077 310 SUPERFAMILY SSF51735 2 309 3.64E-87 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5578 f6236ce34ea940ee76336002b721d077 310 PIRSF PIRSF001439 4 310 2.8E-72 T 31-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y89_5578 f6236ce34ea940ee76336002b721d077 310 Gene3D G3DSA:3.40.50.720 121 293 1.4E-83 T 31-10-2018 Y89_3716 381b24995115cfce440107af087c8fb2 274 SMART SM00342 189 272 2.9E-28 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3716 381b24995115cfce440107af087c8fb2 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3716 381b24995115cfce440107af087c8fb2 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3716 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF46689 225 274 4.3E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3716 381b24995115cfce440107af087c8fb2 274 Pfam PF12833 Helix-turn-helix domain 195 274 7.2E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3716 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF46689 176 223 4.39E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3716 381b24995115cfce440107af087c8fb2 274 Pfam PF02311 AraC-like ligand binding domain 12 150 4.6E-27 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_3716 381b24995115cfce440107af087c8fb2 274 Gene3D G3DSA:2.60.120.10 14 98 2.0E-6 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3716 381b24995115cfce440107af087c8fb2 274 SUPERFAMILY SSF51215 22 153 6.54E-22 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_3716 381b24995115cfce440107af087c8fb2 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_3716 381b24995115cfce440107af087c8fb2 274 Gene3D G3DSA:1.10.10.60 174 274 6.1E-28 T 31-10-2018 Y89_3692 4c826c8754038014abd7c87ccb398bae 369 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 363 53.683 T 31-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 Y89_3692 4c826c8754038014abd7c87ccb398bae 369 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 15 348 9.5E-105 T 31-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 Y89_3692 4c826c8754038014abd7c87ccb398bae 369 SUPERFAMILY SSF52540 145 283 5.49E-6 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3692 4c826c8754038014abd7c87ccb398bae 369 SMART SM00450 2 133 7.9E-7 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_3692 4c826c8754038014abd7c87ccb398bae 369 Gene3D G3DSA:3.40.250.10 2 133 7.8E-31 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_3692 4c826c8754038014abd7c87ccb398bae 369 SUPERFAMILY SSF52821 10 136 6.1E-18 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SUPERFAMILY SSF50447 272 412 3.31E-35 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Gene3D G3DSA:3.30.230.10 492 696 5.4E-89 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-30 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 188 8.6E-35 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SUPERFAMILY SSF54980 612 697 1.77E-28 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Pfam PF00009 Elongation factor Tu GTP binding domain 10 288 2.6E-62 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SMART SM00889 488 607 1.2E-69 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Gene3D G3DSA:3.40.50.300 1 294 3.5E-111 T 31-10-2018 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SUPERFAMILY SSF52540 6 288 1.85E-103 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Pfam PF03144 Elongation factor Tu domain 2 332 399 7.9E-17 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 700 0.0 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Gene3D G3DSA:3.30.70.240 613 683 5.4E-89 T 31-10-2018 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SMART SM00838 609 696 3.3E-56 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SUPERFAMILY SSF54211 487 607 6.57E-42 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Gene3D G3DSA:2.40.30.10 295 408 2.6E-47 T 31-10-2018 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 111.204 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 PRINTS PR00315 GTP-binding elongation factor signature 86 96 1.6E-16 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-16 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.6E-16 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 PRINTS PR00315 GTP-binding elongation factor signature 102 113 1.6E-16 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 PRINTS PR00315 GTP-binding elongation factor signature 138 147 1.6E-16 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Pfam PF14492 Elongation Factor G, domain II 412 486 6.4E-35 T 31-10-2018 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Pfam PF03764 Elongation factor G, domain IV 487 605 4.5E-44 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 SUPERFAMILY SSF54980 412 489 5.04E-25 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_3204 4853f85735ed53e8759fb206ade50a1b 702 Gene3D G3DSA:3.30.70.870 413 488 9.2E-34 T 31-10-2018 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 Gene3D G3DSA:2.40.50.940 241 305 1.5E-8 T 31-10-2018 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 Gene3D G3DSA:3.40.50.300 22 240 4.2E-68 T 31-10-2018 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 SUPERFAMILY SSF50331 255 381 1.25E-15 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0320 64375893897fefd4c7a79411f630f6a8 384 SMART SM00382 47 230 1.2E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0320 64375893897fefd4c7a79411f630f6a8 384 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 382 8.1E-129 T 31-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 Pfam PF08402 TOBE domain 300 382 1.4E-16 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 Pfam PF00005 ABC transporter 39 180 9.6E-38 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 Gene3D G3DSA:2.40.50.140 306 350 1.5E-8 T 31-10-2018 Y89_0320 64375893897fefd4c7a79411f630f6a8 384 SUPERFAMILY SSF52540 22 260 4.91E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 Pfam PF04542 Sigma-70 region 2 49 115 4.1E-16 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 SUPERFAMILY SSF88946 30 132 1.27E-28 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 45 204 1.1E-27 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 Gene3D G3DSA:1.10.1740.10 23 141 8.3E-28 T 31-10-2018 Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 Gene3D G3DSA:1.10.10.10 145 207 4.1E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 Pfam PF08281 Sigma-70, region 4 149 201 5.4E-11 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2126 94ad5588f7325537d742a5b7e6ff5085 211 SUPERFAMILY SSF88659 132 207 1.29E-14 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_6025 1101573f50588b755fcac12ddc3934e6 457 Gene3D G3DSA:1.10.150.130 46 131 1.6E-7 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_6025 1101573f50588b755fcac12ddc3934e6 457 Gene3D G3DSA:1.10.443.10 182 395 6.4E-27 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_6025 1101573f50588b755fcac12ddc3934e6 457 SUPERFAMILY SSF56349 178 388 5.59E-28 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_6025 1101573f50588b755fcac12ddc3934e6 457 Pfam PF00589 Phage integrase family 186 333 2.5E-15 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_5555 b233a3f371b895cda2de725429e05696 463 SMART SM00304 189 242 7.6E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5555 b233a3f371b895cda2de725429e05696 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 5.0E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5555 b233a3f371b895cda2de725429e05696 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 5.0E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5555 b233a3f371b895cda2de725429e05696 463 SMART SM00387 352 461 8.0E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5555 b233a3f371b895cda2de725429e05696 463 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 460 7.2E-176 T 31-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y89_5555 b233a3f371b895cda2de725429e05696 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 448 1.4E-11 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5555 b233a3f371b895cda2de725429e05696 463 Gene3D G3DSA:3.30.565.10 314 463 4.5E-25 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5555 b233a3f371b895cda2de725429e05696 463 SMART SM00388 243 309 6.2E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5555 b233a3f371b895cda2de725429e05696 463 SUPERFAMILY SSF47384 226 307 1.51E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5555 b233a3f371b895cda2de725429e05696 463 Pfam PF00672 HAMP domain 189 238 5.3E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5555 b233a3f371b895cda2de725429e05696 463 Gene3D G3DSA:1.10.287.130 193 310 7.9E-23 T 31-10-2018 Y89_5555 b233a3f371b895cda2de725429e05696 463 SUPERFAMILY SSF158472 191 239 3.92E-5 T 31-10-2018 Y89_5555 b233a3f371b895cda2de725429e05696 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 307 2.3E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5555 b233a3f371b895cda2de725429e05696 463 SUPERFAMILY SSF55874 314 460 1.78E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 Gene3D G3DSA:3.40.190.10 168 258 2.1E-28 T 31-10-2018 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 SUPERFAMILY SSF46785 1 109 7.37E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.0E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 Gene3D G3DSA:3.40.190.10 90 267 2.1E-28 T 31-10-2018 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 Gene3D G3DSA:1.10.10.10 1 89 2.0E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 Pfam PF03466 LysR substrate binding domain 85 281 8.2E-36 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0819 2d6390eac23b8f1096317a95df35b1e5 284 SUPERFAMILY SSF53850 86 281 4.75E-30 T 31-10-2018 Y89_3565 021baa9421d6f31dbb048a4d89abeab7 508 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 184 8.2E-47 T 31-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices Y89_3565 021baa9421d6f31dbb048a4d89abeab7 508 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 260 505 1.2E-94 T 31-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 217 4.0E-24 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:1.10.540.10 1 121 8.9E-33 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:2.40.110.10 123 234 7.4E-40 T 31-10-2018 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 SUPERFAMILY SSF56645 5 241 1.96E-79 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Gene3D G3DSA:1.20.140.10 235 378 1.1E-44 T 31-10-2018 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 119 1.1E-29 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 SUPERFAMILY SSF47203 229 377 1.16E-46 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 5.4E-40 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4166 37c830e3ebc6bede3db6eee57369001a 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_1882 77641d21ec5af6093af9cfb39d1a8d00 519 Gene3D G3DSA:1.20.1250.20 269 505 3.2E-12 T 31-10-2018 Y89_1882 77641d21ec5af6093af9cfb39d1a8d00 519 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 500 1.0E-121 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Y89_1882 77641d21ec5af6093af9cfb39d1a8d00 519 Pfam PF07690 Major Facilitator Superfamily 25 418 1.3E-44 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1882 77641d21ec5af6093af9cfb39d1a8d00 519 SUPERFAMILY SSF103473 11 505 9.81E-59 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1882 77641d21ec5af6093af9cfb39d1a8d00 519 Gene3D G3DSA:1.20.1720.10 20 226 2.2E-34 T 31-10-2018 Y89_1797 f8e5321434bdb7a567ccbc9edd8019f5 351 Pfam PF13439 Glycosyltransferase Family 4 14 165 6.5E-15 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_1797 f8e5321434bdb7a567ccbc9edd8019f5 351 Pfam PF13692 Glycosyl transferases group 1 180 292 8.2E-18 T 31-10-2018 Y89_1797 f8e5321434bdb7a567ccbc9edd8019f5 351 Gene3D G3DSA:3.40.50.2000 1 174 4.4E-20 T 31-10-2018 Y89_1797 f8e5321434bdb7a567ccbc9edd8019f5 351 SUPERFAMILY SSF53756 1 327 1.78E-63 T 31-10-2018 Y89_1797 f8e5321434bdb7a567ccbc9edd8019f5 351 Gene3D G3DSA:3.40.50.2000 175 315 8.4E-25 T 31-10-2018 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 149 1.9E-70 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 SUPERFAMILY SSF51735 199 381 1.47E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0455 52da69c76fbcdb743fff971145cbd520 469 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 461 2.8E-153 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 SMART SM00997 199 381 4.8E-82 T 31-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.720 206 379 2.2E-71 T 31-10-2018 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 SUPERFAMILY SSF52283 10 469 8.5E-108 T 31-10-2018 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 221 237 - T 31-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 31-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 199 381 1.5E-56 T 31-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 PIRSF PIRSF001109 2 469 1.4E-184 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.1480 10 205 2.9E-91 T 31-10-2018 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 SMART SM00996 12 468 1.0E-276 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 461 43.835 T 31-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 Y89_0455 52da69c76fbcdb743fff971145cbd520 469 Gene3D G3DSA:3.40.50.1480 380 469 4.3E-33 T 31-10-2018 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF00488 MutS domain V 609 795 4.9E-85 T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF55271 3 115 6.28E-43 T 31-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:1.10.1420.10 386 502 9.0E-100 T 31-10-2018 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05190 MutS family domain IV 427 517 2.6E-29 T 31-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SMART SM00533 283 590 6.2E-109 T 31-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF48334 267 564 7.06E-85 T 31-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05188 MutS domain II 128 253 4.3E-31 T 31-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SMART SM00534 606 792 1.4E-121 T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 687 703 - T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF05192 MutS domain III 270 558 2.9E-38 T 31-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 PIRSF PIRSF037677 2 180 1.9E-27 T 31-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 PIRSF PIRSF037677 200 833 5.0E-124 T 31-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 7 847 25.303 T 31-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF53150 114 266 9.16E-44 T 31-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Pfam PF01624 MutS domain I 8 119 1.6E-42 T 31-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.30.420.110 127 259 3.7E-38 T 31-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.40.50.300 568 822 6.3E-100 T 31-10-2018 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 7 852 0.0 T 31-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:3.40.1170.10 1 121 3.1E-51 T 31-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 SUPERFAMILY SSF52540 568 795 9.11E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1406 681122e2ae2a73e53ce4de68b17c98d1 855 Gene3D G3DSA:1.10.1420.10 266 558 9.0E-100 T 31-10-2018 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF03144 Elongation factor Tu domain 2 331 398 7.1E-18 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF50447 271 411 5.52E-35 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SMART SM00889 487 612 1.3E-66 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.230.10 491 616 5.9E-51 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF14492 Elongation Factor G, domain II 411 485 2.4E-35 T 31-10-2018 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 7.8E-65 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF03764 Elongation factor G, domain IV 486 611 7.7E-42 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 705 0.0 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 186 5.1E-33 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54980 617 703 2.78E-29 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Pfam PF00679 Elongation factor G C-terminus 615 699 1.2E-30 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-17 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 12 25 6.6E-17 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-17 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.6E-17 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-17 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54980 411 488 1.22E-25 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF54211 486 612 8.09E-37 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:2.40.30.10 294 407 7.5E-48 T 31-10-2018 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SMART SM00838 614 701 7.2E-55 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 SUPERFAMILY SSF52540 6 287 9.06E-104 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.70.240 617 705 2.5E-34 T 31-10-2018 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.40.50.300 1 293 4.1E-115 T 31-10-2018 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Hamap MF_00054_B Elongation factor G [fusA]. 6 705 110.118 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0756 def477d94a366c4df30b12f5fcfb5a61 706 Gene3D G3DSA:3.30.70.870 412 490 7.7E-34 T 31-10-2018 Y89_2171 719665013b69b87d293241437d573b8a 142 Gene3D G3DSA:2.20.25.10 1 47 1.5E-24 T 31-10-2018 Y89_2171 719665013b69b87d293241437d573b8a 142 SUPERFAMILY SSF82784 1 140 2.09E-47 T 31-10-2018 IPR036102 OsmC/Ohr superfamily Y89_2171 719665013b69b87d293241437d573b8a 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 140 3.9E-57 T 31-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 Y89_2171 719665013b69b87d293241437d573b8a 142 Pfam PF02566 OsmC-like protein 44 138 5.6E-17 T 31-10-2018 IPR003718 OsmC/Ohr family Y89_2171 719665013b69b87d293241437d573b8a 142 Gene3D G3DSA:3.30.300.20 48 141 7.1E-34 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 44.769 T 31-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Gene3D G3DSA:3.20.190.10 2 129 1.4E-40 T 31-10-2018 IPR035937 MutM-like, N-terminal Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF81624 2 135 1.15E-40 T 31-10-2018 IPR035937 MutM-like, N-terminal Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 5.2E-23 T 31-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 31-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 SMART SM00898 2 116 1.5E-55 T 31-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 6.4E-9 T 31-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Gene3D G3DSA:1.10.8.50 132 270 3.6E-42 T 31-10-2018 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF57716 218 269 1.17E-16 T 31-10-2018 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 SUPERFAMILY SSF46946 131 222 1.09E-27 T 31-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 1.6E-33 T 31-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 SMART SM01232 130 222 6.8E-46 T 31-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Y89_0378 e454116f66a25fd6e3c6691e7bcb9837 270 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 1.1E-91 T 31-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 Gene3D G3DSA:2.60.15.10 3 90 2.2E-29 T 31-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 3.9E-45 T 31-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 SUPERFAMILY SSF51344 4 86 9.55E-24 T 31-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 19.495 T 31-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 86 9.0E-38 T 31-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 SUPERFAMILY SSF46604 89 137 2.48E-11 T 31-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 132 1.3E-7 T 31-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Y89_6293 c708b21f2427fc71bcde751da15b347d 141 Gene3D G3DSA:1.20.5.440 91 133 1.2E-11 T 31-10-2018 Y89_6293 c708b21f2427fc71bcde751da15b347d 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 4.3E-30 T 31-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 Gene3D G3DSA:1.10.101.10 180 259 4.3E-26 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 34 166 2.1E-31 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 Gene3D G3DSA:3.40.80.10 34 179 1.5E-55 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 SMART SM00644 24 165 1.0E-41 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 SUPERFAMILY SSF47090 194 255 4.32E-17 T 31-10-2018 IPR036365 PGBD-like superfamily Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 Pfam PF01471 Putative peptidoglycan binding domain 199 253 1.2E-8 T 31-10-2018 IPR002477 Peptidoglycan binding-like Y89_6225 bb8f1caa0efecdb6a0c9caedb3792f21 259 SUPERFAMILY SSF55846 22 177 1.16E-54 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_0201 c093a76e35b15ac61106a181a19d2dfe 452 Gene3D G3DSA:2.40.160.10 6 452 8.6E-129 T 31-10-2018 IPR023614 Porin domain superfamily Y89_0201 c093a76e35b15ac61106a181a19d2dfe 452 Pfam PF03573 outer membrane porin, OprD family 29 450 1.0E-139 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_2311 a1a3b8d2347aeba3d2ac194173be4938 169 SUPERFAMILY SSF102712 70 142 1.57E-5 T 31-10-2018 Y89_2311 a1a3b8d2347aeba3d2ac194173be4938 169 TIGRFAM TIGR00608 radc: DNA repair protein RadC 29 169 1.2E-45 T 31-10-2018 IPR001405 Uncharacterised protein family UPF0758 Y89_2311 a1a3b8d2347aeba3d2ac194173be4938 169 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 118 123 - T 31-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Y89_2311 a1a3b8d2347aeba3d2ac194173be4938 169 Pfam PF04002 RadC-like JAB domain 48 167 2.6E-44 T 31-10-2018 IPR025657 RadC-like JAB domain Y89_2311 a1a3b8d2347aeba3d2ac194173be4938 169 Gene3D G3DSA:3.40.140.10 47 169 4.7E-42 T 31-10-2018 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Gene3D G3DSA:1.10.8.60 302 376 1.1E-21 T 31-10-2018 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 SMART SM00382 150 293 7.1E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 154 167 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 343 352 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Pfam PF00158 Sigma-54 interaction domain 135 296 3.6E-67 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 442 462 7.0E-6 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 442 7.0E-6 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Gene3D G3DSA:3.40.50.2300 1 125 6.1E-35 T 31-10-2018 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 SUPERFAMILY SSF46689 343 458 1.34E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 216 231 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Gene3D G3DSA:3.40.50.300 126 301 1.4E-62 T 31-10-2018 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 SUPERFAMILY SSF52540 132 371 1.62E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Pfam PF00072 Response regulator receiver domain 5 114 2.5E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Gene3D G3DSA:1.10.10.60 404 462 3.4E-10 T 31-10-2018 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 Pfam PF02954 Bacterial regulatory protein, Fis family 419 458 1.5E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 SUPERFAMILY SSF52172 4 174 2.85E-41 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4255 0a64fbfeb1cb94d592a070fd1e9f278d 473 SMART SM00448 3 114 1.3E-33 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 PIRSF PIRSF004553 17 198 5.5E-48 T 31-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 Pfam PF03602 Conserved hypothetical protein 95 18 195 4.1E-59 T 31-10-2018 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 62 76 9.5E-6 T 31-10-2018 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 37 53 9.5E-6 T 31-10-2018 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 128 140 9.5E-6 T 31-10-2018 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 SUPERFAMILY SSF53335 18 195 1.67E-49 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 Gene3D G3DSA:3.40.50.150 9 197 4.4E-56 T 31-10-2018 Y89_0392 115225bfe9336b6e35b42c7da41127b9 198 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 14 196 1.1E-50 T 31-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 354 2.3E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SUPERFAMILY SSF47384 125 193 5.3E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SMART SM00388 131 196 3.2E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 1.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 1.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 301 1.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Gene3D G3DSA:3.30.450.20 3 114 1.3E-20 T 31-10-2018 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SUPERFAMILY SSF55785 6 104 1.54E-8 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Gene3D G3DSA:3.30.565.10 195 354 5.2E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SMART SM00387 235 355 2.7E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SUPERFAMILY SSF55874 198 353 9.56E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Gene3D G3DSA:1.10.287.130 135 192 1.8E-14 T 31-10-2018 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Pfam PF00512 His Kinase A (phospho-acceptor) domain 135 188 1.3E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 Pfam PF00989 PAS fold 8 104 5.4E-6 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_5795 3ab154335bc98ffbbadcad691cdd99a3 358 SMART SM00091 5 73 9.8E-5 T 31-10-2018 IPR000014 PAS domain Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 293 304 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 Gene3D G3DSA:3.40.605.10 31 490 2.6E-177 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 SUPERFAMILY SSF53720 15 494 3.4E-168 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 Gene3D G3DSA:3.40.309.10 268 460 2.6E-177 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0226 c3a1095539f2b0e0eccde87fa35897ff 496 Pfam PF00171 Aldehyde dehydrogenase family 32 490 3.8E-168 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 Gene3D G3DSA:1.10.10.60 228 330 3.3E-27 T 31-10-2018 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 Pfam PF12833 Helix-turn-helix domain 250 329 2.9E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 Gene3D G3DSA:3.40.50.880 1 227 1.2E-60 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 SUPERFAMILY SSF46689 280 330 3.94E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 Pfam PF01965 DJ-1/PfpI family 7 188 3.5E-21 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 SUPERFAMILY SSF52317 6 208 2.86E-45 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 SMART SM00342 244 327 8.9E-29 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3477 c1b0b732cb2a0fdcd7cf464320544879 334 SUPERFAMILY SSF46689 228 277 1.33E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0316 d192a601871560b9c600f63d0efd335d 452 SUPERFAMILY SSF55931 114 449 2.35E-106 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_0316 d192a601871560b9c600f63d0efd335d 452 Gene3D G3DSA:3.30.590.10 117 450 2.1E-102 T 31-10-2018 Y89_0316 d192a601871560b9c600f63d0efd335d 452 Pfam PF00120 Glutamine synthetase, catalytic domain 115 446 3.7E-111 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_0316 d192a601871560b9c600f63d0efd335d 452 SMART SM01230 114 370 2.5E-112 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_0316 d192a601871560b9c600f63d0efd335d 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 250 265 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_0316 d192a601871560b9c600f63d0efd335d 452 SUPERFAMILY SSF54368 6 113 2.62E-17 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5934 b9f65335284a2d0c5a03bf18f76b5aac 157 Pfam PF03061 Thioesterase superfamily 58 148 1.3E-18 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_5934 b9f65335284a2d0c5a03bf18f76b5aac 157 SUPERFAMILY SSF54637 7 155 1.87E-29 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5934 b9f65335284a2d0c5a03bf18f76b5aac 157 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 155 7.5E-17 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_5934 b9f65335284a2d0c5a03bf18f76b5aac 157 Gene3D G3DSA:3.10.129.10 1 157 6.2E-50 T 31-10-2018 Y89_5524 35238b1d1416e88a392103466f143b16 429 Gene3D G3DSA:3.30.1490.20 120 189 4.6E-29 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_5524 35238b1d1416e88a392103466f143b16 429 SMART SM01210 329 422 3.2E-55 T 31-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 SUPERFAMILY SSF52440 1 102 1.18E-34 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_5524 35238b1d1416e88a392103466f143b16 429 Gene3D G3DSA:3.90.600.10 329 428 6.0E-35 T 31-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 7.0E-180 T 31-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 101 3.0E-33 T 31-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 43.471 T 31-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 Gene3D G3DSA:3.40.50.20 2 94 2.3E-35 T 31-10-2018 Y89_5524 35238b1d1416e88a392103466f143b16 429 Gene3D G3DSA:3.30.470.20 190 328 2.7E-56 T 31-10-2018 Y89_5524 35238b1d1416e88a392103466f143b16 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 330 420 7.9E-30 T 31-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 102 295 1.4E-82 T 31-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 289 296 - T 31-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_5524 35238b1d1416e88a392103466f143b16 429 SUPERFAMILY SSF56059 103 319 3.01E-64 T 31-10-2018 Y89_5524 35238b1d1416e88a392103466f143b16 429 SMART SM01209 102 295 4.4E-141 T 31-10-2018 Y89_5524 35238b1d1416e88a392103466f143b16 429 SUPERFAMILY SSF51246 328 423 2.04E-33 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 41.481 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 Gene3D G3DSA:3.30.1300.10 179 283 3.2E-29 T 31-10-2018 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 Gene3D G3DSA:3.40.50.620 1 178 2.8E-78 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 5.3E-101 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 3.5E-103 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 68 5.1E-7 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_5343 ea0ee37cc342b6f6a1e467b09cae366c 283 SUPERFAMILY SSF52374 1 281 8.45E-107 T 31-10-2018 Y89_4882 e125440435a4fea631adba9b7284e34a 594 Pfam PF13000 Acetyl-coenzyme A transporter 1 21 107 2.9E-7 T 31-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 Y89_4882 e125440435a4fea631adba9b7284e34a 594 TIGRFAM TIGR00901 2A0125: AmpG-like permease 29 534 2.6E-166 T 31-10-2018 Y89_4882 e125440435a4fea631adba9b7284e34a 594 SUPERFAMILY SSF103473 12 579 8.5E-20 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4882 e125440435a4fea631adba9b7284e34a 594 Gene3D G3DSA:1.20.1250.20 11 212 1.2E-8 T 31-10-2018 Y89_4882 e125440435a4fea631adba9b7284e34a 594 Gene3D G3DSA:1.20.1250.20 368 583 9.7E-7 T 31-10-2018 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.3E-19 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.3E-19 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.3E-19 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.3E-19 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Pfam PF04073 Aminoacyl-tRNA editing domain 257 375 4.6E-24 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 457 3.2E-52 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 SUPERFAMILY SSF52954 461 570 3.17E-28 T 31-10-2018 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Gene3D G3DSA:3.30.930.10 11 463 5.9E-242 T 31-10-2018 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Gene3D G3DSA:3.40.50.800 4 553 5.9E-242 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 PIRSF PIRSF001535 1 571 1.8E-271 T 31-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 570 42.626 T 31-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Pfam PF03129 Anticodon binding domain 473 567 2.7E-16 T 31-10-2018 IPR004154 Anticodon-binding Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 Gene3D G3DSA:3.90.960.10 240 387 5.9E-242 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 SUPERFAMILY SSF55826 218 388 4.71E-29 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 SUPERFAMILY SSF55681 10 476 4.06E-108 T 31-10-2018 Y89_4400 1f3887296e324d7cdb5d64c79faae190 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 7.4E-255 T 31-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Y89_0453 1002a231f3ccb6e7b319dbd8538ae74c 290 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 16 287 1.8E-100 T 31-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 Y89_0453 1002a231f3ccb6e7b319dbd8538ae74c 290 Gene3D G3DSA:3.20.20.220 3 290 1.8E-100 T 31-10-2018 Y89_0453 1002a231f3ccb6e7b319dbd8538ae74c 290 Pfam PF02219 Methylenetetrahydrofolate reductase 10 286 2.2E-88 T 31-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Y89_0453 1002a231f3ccb6e7b319dbd8538ae74c 290 SUPERFAMILY SSF51730 8 288 1.16E-95 T 31-10-2018 IPR029041 FAD-linked oxidoreductase-like Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Gene3D G3DSA:1.25.40.10 450 752 2.6E-27 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Pfam PF13435 Cytochrome c554 and c-prime 174 218 3.9E-5 T 31-10-2018 IPR023155 Cytochrome c-552/4 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Pfam PF13435 Cytochrome c554 and c-prime 50 75 0.0038 T 31-10-2018 IPR023155 Cytochrome c-552/4 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SMART SM00028 648 681 0.2 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SMART SM00028 580 613 12.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SMART SM00028 614 647 180.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SMART SM00028 682 715 64.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SUPERFAMILY SSF48695 46 437 1.46E-57 T 31-10-2018 IPR036280 Multiheme cytochrome superfamily Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Gene3D G3DSA:1.10.1130.10 143 280 2.0E-14 T 31-10-2018 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SUPERFAMILY SSF48371 464 548 3.8E-6 T 31-10-2018 IPR016024 Armadillo-type fold Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 313 342 4.9E-7 T 31-10-2018 IPR010177 Doubled CXXCH motif Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 Pfam PF13429 Tetratricopeptide repeat 618 737 6.6E-9 T 31-10-2018 Y89_3914 81ed0ddbabcc3095f5f708d42593cf9c 753 SUPERFAMILY SSF48452 563 750 8.85E-22 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 28 41 3.2E-24 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 95 112 3.2E-24 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 56 64 3.2E-24 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 4 19 3.2E-24 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 PRINTS PR01100 Shikimate kinase family signature 74 83 3.2E-24 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 Gene3D G3DSA:3.40.50.300 2 169 4.8E-55 T 31-10-2018 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 SUPERFAMILY SSF52540 3 166 4.21E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 Pfam PF01202 Shikimate kinase 10 166 1.8E-55 T 31-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 ProSitePatterns PS01128 Shikimate kinase signature. 57 82 - T 31-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y89_5711 136bbde33741f015c5ac556f2224b4f1 172 Hamap MF_00109 Shikimate kinase [aroK]. 1 167 29.419 T 31-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Y89_5856 1d96b26cc07a0cd96cb1ed318839745a 482 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 482 2.5E-206 T 31-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 Y89_5856 1d96b26cc07a0cd96cb1ed318839745a 482 Pfam PF13520 Amino acid permease 13 455 1.2E-76 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5856 1d96b26cc07a0cd96cb1ed318839745a 482 PIRSF PIRSF006060 1 480 2.6E-51 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5856 1d96b26cc07a0cd96cb1ed318839745a 482 Gene3D G3DSA:1.20.1740.10 3 475 5.6E-61 T 31-10-2018 Y89_5856 1d96b26cc07a0cd96cb1ed318839745a 482 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 7 481 1.0E-217 T 31-10-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 SUPERFAMILY SSF46785 5 116 4.17E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0165 d8b0fd06d66b48152b825178c9758741 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.6E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:1.10.10.10 2 89 1.7E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0165 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:3.40.190.10 171 273 3.4E-37 T 31-10-2018 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 SUPERFAMILY SSF53850 97 304 6.43E-33 T 31-10-2018 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 6.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 6.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 6.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 Pfam PF03466 LysR substrate binding domain 95 301 1.7E-32 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0165 d8b0fd06d66b48152b825178c9758741 305 Gene3D G3DSA:3.40.190.10 98 288 3.4E-37 T 31-10-2018 Y89_0165 d8b0fd06d66b48152b825178c9758741 305 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 6 302 8.3E-115 T 31-10-2018 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04560 RNA polymerase Rpb2, domain 7 1281 1356 4.3E-27 T 31-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 SUPERFAMILY SSF64484 11 1357 0.0 T 31-10-2018 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1110.10 298 443 6.2E-35 T 31-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1354 0.0 T 31-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.50.150 838 958 3.8E-45 T 31-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1100.10 18 176 4.3E-57 T 31-10-2018 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1100.10 648 718 1.6E-21 T 31-10-2018 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.50.100 719 793 4.2E-33 T 31-10-2018 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.270.10 795 837 9.6E-6 T 31-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04565 RNA polymerase Rpb2, domain 3 518 585 4.6E-31 T 31-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1357 12.349 T 31-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF00562 RNA polymerase Rpb2, domain 6 722 1279 2.3E-160 T 31-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04563 RNA polymerase beta subunit 26 504 6.3E-41 T 31-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:2.40.270.10 1052 1257 2.9E-87 T 31-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF10385 RNA polymerase beta subunit external 1 domain 596 661 4.7E-20 T 31-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 227 1.8E-8 T 31-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 359 459 1.1E-14 T 31-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1080 1092 - T 31-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1100.10 444 640 2.9E-72 T 31-10-2018 Y89_0752 4b1d9d32e58419a1063dd0b59e1e3bf6 1357 Gene3D G3DSA:3.90.1800.10 1267 1320 8.4E-11 T 31-10-2018 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 SMART SM00421 178 235 8.9E-20 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 SUPERFAMILY SSF46894 171 241 3.74E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 Gene3D G3DSA:1.10.10.10 179 241 1.9E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 235 2.2E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 SUPERFAMILY SSF75516 9 172 3.79E-39 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 Pfam PF03472 Autoinducer binding domain 26 162 6.2E-36 T 31-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 ProSitePatterns PS00622 LuxR-type HTH domain signature. 195 222 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1529 420e996a0adeb596fc5d923200c7aaaa 241 Gene3D G3DSA:3.30.450.80 2 177 2.7E-54 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 Gene3D G3DSA:3.90.1150.10 26 394 1.3E-149 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 Gene3D G3DSA:3.40.640.10 60 305 1.3E-149 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 403 70.443 T 31-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 SUPERFAMILY SSF53383 16 402 5.32E-127 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 404 7.1E-215 T 31-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 400 7.6E-152 T 31-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 Pfam PF00202 Aminotransferase class-III 20 400 7.5E-126 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 PIRSF PIRSF000521 28 159 1.1E-5 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4464 e3ccfcfad45484157833d17a68d4d280 406 PIRSF PIRSF000521 172 403 9.1E-33 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 SUPERFAMILY SSF52540 4 245 5.9E-86 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1829 eadb642edea2f84abb58a62756c116d9 386 Pfam PF03459 TOBE domain 297 353 8.8E-9 T 31-10-2018 IPR005116 Transport-associated OB, type 1 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 SMART SM00382 30 213 1.5E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1829 eadb642edea2f84abb58a62756c116d9 386 Gene3D G3DSA:3.40.50.300 3 223 1.0E-67 T 31-10-2018 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 SUPERFAMILY SSF50331 238 363 2.43E-25 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_1829 eadb642edea2f84abb58a62756c116d9 386 Gene3D G3DSA:2.40.50.940 224 356 4.1E-31 T 31-10-2018 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 Gene3D G3DSA:2.40.50.140 291 347 4.1E-31 T 31-10-2018 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1829 eadb642edea2f84abb58a62756c116d9 386 Pfam PF00005 ABC transporter 21 163 3.1E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0204 3a5f487ae97e0fe7e38f5dfa576908c0 790 Gene3D G3DSA:2.40.170.20 65 790 5.5E-146 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0204 3a5f487ae97e0fe7e38f5dfa576908c0 790 Pfam PF00593 TonB dependent receptor 300 788 1.3E-39 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0204 3a5f487ae97e0fe7e38f5dfa576908c0 790 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 773 790 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_0204 3a5f487ae97e0fe7e38f5dfa576908c0 790 SUPERFAMILY SSF56935 55 790 6.23E-117 T 31-10-2018 Y89_0204 3a5f487ae97e0fe7e38f5dfa576908c0 790 Pfam PF07715 TonB-dependent Receptor Plug Domain 75 181 5.9E-14 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_5730 8dca035436750d5ebd57cf7bc2ebdf52 560 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 2.3E-65 T 31-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Y89_5730 8dca035436750d5ebd57cf7bc2ebdf52 560 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 560 0.0 T 31-10-2018 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 Y89_5730 8dca035436750d5ebd57cf7bc2ebdf52 560 Gene3D G3DSA:3.40.50.1820 204 487 6.5E-7 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5730 8dca035436750d5ebd57cf7bc2ebdf52 560 SUPERFAMILY SSF53474 201 492 6.01E-32 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 SMART SM00839 202 443 1.4E-91 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 200 443 4.3E-86 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:1.10.285.10 5 382 4.7E-174 T 31-10-2018 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 PIRSF PIRSF000185 20 445 5.4E-119 T 31-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:1.10.285.10 384 445 8.7E-11 T 31-10-2018 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:3.40.50.10860 53 188 4.7E-174 T 31-10-2018 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 SUPERFAMILY SSF51735 200 444 8.74E-77 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 120 133 - T 31-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 370 381 6.6E-33 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 233 253 6.6E-33 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 112 126 6.6E-33 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 191 213 6.6E-33 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 55 183 4.4E-50 T 31-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 SUPERFAMILY SSF53223 4 194 2.81E-75 T 31-10-2018 Y89_5195 18406430e477a6c77de8a5bcce1db1f0 445 Gene3D G3DSA:3.40.50.720 207 371 4.7E-174 T 31-10-2018 Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 SMART SM00267 151 323 6.4E-52 T 31-10-2018 IPR000160 GGDEF domain Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 SUPERFAMILY SSF55073 167 322 4.71E-46 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 Pfam PF08447 PAS fold 57 145 3.3E-18 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 158 5.7E-14 T 31-10-2018 IPR000014 PAS domain Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 Pfam PF00990 Diguanylate cyclase, GGDEF domain 162 318 2.5E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 Gene3D G3DSA:3.30.450.20 41 156 2.6E-25 T 31-10-2018 Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 SMART SM00086 108 151 4.3E-5 T 31-10-2018 IPR001610 PAC motif Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 Gene3D G3DSA:3.30.70.270 157 322 5.7E-55 T 31-10-2018 Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 321 1.4E-43 T 31-10-2018 IPR000160 GGDEF domain Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 SMART SM00091 33 102 0.0022 T 31-10-2018 IPR000014 PAS domain Y89_0308 b101b32e5dbb47cf67e076fd626700c3 323 SUPERFAMILY SSF55785 39 153 1.21E-18 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 Pfam PF08362 YcdC-like protein, C-terminal region 75 216 1.7E-53 T 31-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 5.6E-13 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 Gene3D G3DSA:1.10.10.60 8 74 7.3E-20 T 31-10-2018 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 SUPERFAMILY SSF48498 92 216 2.19E-43 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 SUPERFAMILY SSF46689 16 95 6.67E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 1.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0179 fde57cadd89d3e454ad76cbdc711b4d7 221 Gene3D G3DSA:1.10.357.10 75 215 3.5E-51 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF52777 285 526 1.11E-40 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF56801 543 1333 2.17E-118 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Pfam PF00668 Condensation domain 136 442 2.8E-29 T 31-10-2018 IPR001242 Condensation domain Y89_0796 ff48da8287b839fd23889915172d64c7 1438 ProSitePatterns PS00455 Putative AMP-binding domain signature. 694 705 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF47336 1349 1421 7.07E-17 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Pfam PF00550 Phosphopantetheine attachment site 13 80 1.7E-7 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Pfam PF00550 Phosphopantetheine attachment site 1358 1421 5.8E-15 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SMART SM00823 Phosphopantetheine attachment site 1356 1425 4.2E-11 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:1.10.1200.10 6 84 7.6E-17 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0796 ff48da8287b839fd23889915172d64c7 1438 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1380 1395 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.30.300.30 944 1053 1.3E-9 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.30.300.30 1252 1340 4.1E-11 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.30.559.30 282 531 1.2E-73 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF47336 6 117 9.95E-10 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF52777 100 296 9.23E-21 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.40.50.12780 550 942 1.3E-108 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.40.50.150 1142 1242 1.3E-7 T 31-10-2018 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:1.10.1200.10 1341 1429 1.2E-21 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Gene3D G3DSA:3.30.559.10 98 279 2.4E-38 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_0796 ff48da8287b839fd23889915172d64c7 1438 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 583 973 2.3E-113 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_0796 ff48da8287b839fd23889915172d64c7 1438 SUPERFAMILY SSF53335 1109 1268 7.59E-10 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0796 ff48da8287b839fd23889915172d64c7 1438 Pfam PF00501 AMP-binding enzyme 563 950 5.8E-85 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_4918 93bc7cc205aae3c855b3ea9a148904c0 260 Gene3D G3DSA:1.10.760.10 31 225 3.1E-13 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_4918 93bc7cc205aae3c855b3ea9a148904c0 260 SUPERFAMILY SSF46626 16 223 1.5E-45 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_4918 93bc7cc205aae3c855b3ea9a148904c0 260 Pfam PF02167 Cytochrome C1 family 91 259 7.5E-10 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 SUPERFAMILY SSF51905 1 374 9.83E-64 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 328 4.3E-69 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 3.1E-39 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 5.4E-78 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 Gene3D G3DSA:3.50.50.60 149 272 4.7E-115 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 464 3.8E-158 T 31-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 Gene3D G3DSA:3.30.390.30 346 466 2.3E-44 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.6E-35 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 2.6E-35 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 2.6E-35 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 2.6E-35 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 2.6E-35 T 31-10-2018 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 PIRSF PIRSF000350 1 462 2.4E-91 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 SUPERFAMILY SSF55424 343 464 9.11E-41 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_5498 e6642ea9383035f75e74d9bd4bf2ee63 466 Gene3D G3DSA:3.50.50.60 5 328 4.7E-115 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 PIRSF PIRSF001399 1 147 2.6E-63 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 31-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 Pfam PF01220 Dehydroquinase class II 5 140 1.2E-61 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 Gene3D G3DSA:3.40.50.9100 1 147 4.5E-66 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 142 6.6E-62 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 142 2.0E-61 T 31-10-2018 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 SUPERFAMILY SSF52304 4 145 1.27E-62 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_0252 3099c1f9f66af573283a2fa2e540345a 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 73.13 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 215 9.2E-90 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 44 122 2.1E-29 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 11 215 40.285 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 SUPERFAMILY SSF50475 8 215 2.43E-71 T 31-10-2018 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 Gene3D G3DSA:2.30.110.10 2 215 1.1E-86 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 185 198 - T 31-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 PIRSF PIRSF000190 1 215 1.1E-82 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4306 e9c2fae59449cf90fd67c296973e2dda 215 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 175 215 6.3E-19 T 31-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4073 91abf782f1c9d760ef8988a74513b351 490 Gene3D G3DSA:3.40.50.300 6 243 3.4E-58 T 31-10-2018 Y89_4073 91abf782f1c9d760ef8988a74513b351 490 Gene3D G3DSA:3.40.50.880 255 402 1.4E-16 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4073 91abf782f1c9d760ef8988a74513b351 490 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 254 437 1.1E-58 T 31-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Y89_4073 91abf782f1c9d760ef8988a74513b351 490 SUPERFAMILY SSF52540 6 240 2.83E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4073 91abf782f1c9d760ef8988a74513b351 490 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 478 1.9E-150 T 31-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Y89_4073 91abf782f1c9d760ef8988a74513b351 490 SUPERFAMILY SSF52317 254 447 5.77E-42 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4073 91abf782f1c9d760ef8988a74513b351 490 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 488 216.31 T 31-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Y89_4073 91abf782f1c9d760ef8988a74513b351 490 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 233 2.4E-23 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_2611 3f71485359a6fd37d00f6b70e05eccd0 299 Pfam PF00892 EamA-like transporter family 154 282 2.0E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2611 3f71485359a6fd37d00f6b70e05eccd0 299 Pfam PF00892 EamA-like transporter family 18 139 9.0E-9 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2611 3f71485359a6fd37d00f6b70e05eccd0 299 SUPERFAMILY SSF103481 189 286 2.62E-11 T 31-10-2018 Y89_2611 3f71485359a6fd37d00f6b70e05eccd0 299 SUPERFAMILY SSF103481 39 141 2.09E-12 T 31-10-2018 Y89_5564 98f19ffd53f328c78866a837aec9801c 340 Pfam PF16344 Domain of unknown function (DUF4974) 243 336 7.5E-7 T 31-10-2018 IPR032508 Protein FecR, C-terminal Y89_5564 98f19ffd53f328c78866a837aec9801c 340 Pfam PF16220 Domain of unknown function (DUF4880) 33 74 3.9E-12 T 31-10-2018 IPR032623 FecR, N-terminal Y89_5564 98f19ffd53f328c78866a837aec9801c 340 Pfam PF04773 FecR protein 131 226 3.7E-21 T 31-10-2018 IPR006860 FecR protein Y89_5564 98f19ffd53f328c78866a837aec9801c 340 PIRSF PIRSF018266 21 340 8.0E-97 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_5564 98f19ffd53f328c78866a837aec9801c 340 Gene3D G3DSA:2.60.120.1440 125 263 2.2E-18 T 31-10-2018 Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Gene3D G3DSA:2.170.130.10 146 276 1.0E-29 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Pfam PF07715 TonB-dependent Receptor Plug Domain 148 267 1.0E-22 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Pfam PF07660 Secretin and TonB N terminus short domain 66 114 2.2E-7 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 SMART SM00965 65 116 1.3E-10 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Pfam PF00593 TonB dependent receptor 365 877 1.7E-42 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Gene3D G3DSA:3.55.50.30 37 145 1.5E-19 T 31-10-2018 Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 Gene3D G3DSA:2.40.170.20 289 884 2.1E-53 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2498 f0ce88ec2e5953b7675fb8c36f15d4b6 884 SUPERFAMILY SSF56935 134 884 9.47E-98 T 31-10-2018 Y89_0065 c3641bf4249b0cff7cfdd5906774b0ed 168 Gene3D G3DSA:1.20.120.450 1 168 6.8E-62 T 31-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y89_0065 c3641bf4249b0cff7cfdd5906774b0ed 168 Pfam PF09351 Domain of unknown function (DUF1993) 5 165 6.2E-66 T 31-10-2018 IPR018531 Protein of unknown function DUF1993 Y89_0065 c3641bf4249b0cff7cfdd5906774b0ed 168 SUPERFAMILY SSF109854 4 166 2.01E-65 T 31-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 Pfam PF01026 TatD related DNase 3 254 1.7E-77 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 Gene3D G3DSA:3.20.20.140 1 258 3.2E-89 T 31-10-2018 Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 8.5E-84 T 31-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 PIRSF PIRSF005902 1 258 6.9E-76 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 SUPERFAMILY SSF51556 2 256 1.43E-85 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2061 387a3edbef936f43063ae6253b4ada3d 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y89_4340 131c71452bd19b0346d3c7ea267d76a2 383 Pfam PF02803 Thiolase, C-terminal domain 250 360 1.3E-7 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_4340 131c71452bd19b0346d3c7ea267d76a2 383 PIRSF PIRSF000429 3 375 8.1E-26 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_4340 131c71452bd19b0346d3c7ea267d76a2 383 Gene3D G3DSA:3.40.47.10 2 379 2.1E-111 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4340 131c71452bd19b0346d3c7ea267d76a2 383 SUPERFAMILY SSF53901 248 369 1.07E-25 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4340 131c71452bd19b0346d3c7ea267d76a2 383 SUPERFAMILY SSF53901 8 224 3.01E-23 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 SUPERFAMILY SSF54980 127 195 9.35E-11 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 Pfam PF09186 Domain of unknown function (DUF1949) 133 188 2.0E-11 T 31-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 SUPERFAMILY SSF54211 7 121 1.14E-37 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 Gene3D G3DSA:3.30.230.30 1 125 9.2E-45 T 31-10-2018 IPR036956 Impact, N-terminal domain superfamily Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 31-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 Gene3D G3DSA:3.30.70.240 126 191 1.0E-5 T 31-10-2018 Y89_0180 7b0309e4b193a973e860c3ccbbec3ab6 196 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 1.0E-26 T 31-10-2018 IPR001498 Impact, N-terminal Y89_3548 5de7b3067dd8faf22a02bf30d7ac8b7d 231 Gene3D G3DSA:2.60.120.200 2 231 1.6E-63 T 31-10-2018 Y89_3548 5de7b3067dd8faf22a02bf30d7ac8b7d 231 SUPERFAMILY SSF49899 2 230 5.14E-74 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Y89_3548 5de7b3067dd8faf22a02bf30d7ac8b7d 231 Pfam PF08787 Alginate lyase 2 230 3.3E-61 T 31-10-2018 IPR014895 Alginate lyase 2 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SUPERFAMILY SSF47384 185 266 2.75E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Gene3D G3DSA:1.10.287.130 166 265 2.8E-13 T 31-10-2018 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 361 3.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 400 3.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 419 3.7E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Pfam PF00072 Response regulator receiver domain 448 557 1.2E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Gene3D G3DSA:3.30.565.10 274 424 1.1E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SUPERFAMILY SSF55874 257 422 1.01E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SUPERFAMILY SSF52172 443 562 7.4E-21 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Pfam PF13188 PAS domain 44 91 2.4E-4 T 31-10-2018 IPR000014 PAS domain Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SMART SM00388 202 267 2.2E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Gene3D G3DSA:3.40.50.2300 444 562 3.6E-18 T 31-10-2018 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SMART SM00387 311 422 1.2E-27 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 420 6.2E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 Gene3D G3DSA:3.30.450.20 39 156 6.3E-13 T 31-10-2018 Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SUPERFAMILY SSF55785 30 155 2.27E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 164 2.5E-10 T 31-10-2018 IPR000014 PAS domain Y89_3331 64f6bb26e9ec85752ff185dc142ca3c9 564 SMART SM00448 445 557 4.5E-10 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 PIRSF PIRSF000188 1 341 1.4E-141 T 31-10-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 SMART SM00839 138 339 1.9E-66 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 23 129 5.9E-22 T 31-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 SUPERFAMILY SSF51735 138 335 4.33E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 Gene3D G3DSA:3.40.50.720 132 330 2.3E-128 T 31-10-2018 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 Gene3D G3DSA:3.40.50.10860 11 336 2.3E-128 T 31-10-2018 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 214 290 1.0E-8 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 64 78 2.0E-11 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 280 291 2.0E-11 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 170 190 2.0E-11 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Y89_1589 57dada7d741f4d4a5e5d7f1f047aad74 341 SUPERFAMILY SSF53223 2 134 7.68E-41 T 31-10-2018 Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 ProSitePatterns PS00380 Rhodanese signature 1. 402 413 - T 31-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Gene3D G3DSA:3.40.250.10 14 110 1.0E-21 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SUPERFAMILY SSF52821 375 524 2.1E-31 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Gene3D G3DSA:3.40.250.10 374 480 4.9E-24 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Gene3D G3DSA:3.40.250.10 127 234 1.0E-21 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SUPERFAMILY SSF52821 254 352 8.77E-24 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SUPERFAMILY SSF52821 106 235 6.94E-30 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SUPERFAMILY SSF52821 14 121 8.77E-25 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Pfam PF00581 Rhodanese-like domain 279 352 1.7E-8 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Pfam PF00581 Rhodanese-like domain 132 225 3.9E-9 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Pfam PF00581 Rhodanese-like domain 379 468 1.2E-8 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Pfam PF00581 Rhodanese-like domain 16 101 1.7E-8 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SMART SM00450 8 105 7.0E-14 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SMART SM00450 267 359 7.2E-7 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SMART SM00450 377 472 1.1E-5 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 SMART SM00450 131 229 3.9E-7 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_2485 a2639495c72d5d45ea3419b132e8ed0e 527 Gene3D G3DSA:3.40.250.10 262 352 1.9E-24 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 SUPERFAMILY SSF54862 3 101 3.35E-22 T 31-10-2018 Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 Gene3D G3DSA:3.30.70.20 2 102 5.8E-31 T 31-10-2018 Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 Pfam PF11953 Domain of unknown function (DUF3470) 66 109 1.5E-14 T 31-10-2018 IPR022569 Ferredoxin, C-terminal Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.9E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.9E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.9E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_2372 87b5db5063e260f18e64edbdcc31346c 112 Pfam PF00037 4Fe-4S binding domain 34 56 3.1E-6 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 Gene3D G3DSA:2.40.500.20 83 193 3.0E-44 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PIRSF PIRSF000349 1 193 4.3E-87 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 31-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.8E-39 T 31-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 SUPERFAMILY SSF46609 1 84 1.83E-36 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 Gene3D G3DSA:1.10.287.990 20 82 8.2E-27 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 SUPERFAMILY SSF54719 81 192 9.17E-46 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 2.0E-35 T 31-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 3.6E-23 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 3.6E-23 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.6E-23 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.6E-23 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4852 4ce1178654a1b617a78254e9d2e847bd 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 3.6E-23 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 Gene3D G3DSA:3.40.309.10 266 464 1.2E-163 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 Gene3D G3DSA:3.40.605.10 23 492 1.2E-163 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 Pfam PF00171 Aldehyde dehydrogenase family 34 493 2.0E-163 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 SUPERFAMILY SSF53720 12 497 5.24E-162 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_3339 d22a089b0dab5408b0d85b87bfdfb3c0 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 Gene3D G3DSA:3.10.580.10 331 454 1.6E-17 T 31-10-2018 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 11 303 6.9E-65 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 SUPERFAMILY SSF53686 6 321 7.2E-93 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 Gene3D G3DSA:3.40.50.1100 11 311 4.3E-110 T 31-10-2018 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 SMART SM00116 344 391 1.8E-7 T 31-10-2018 IPR000644 CBS domain Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 SUPERFAMILY SSF54631 334 453 8.09E-18 T 31-10-2018 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 31-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 Gene3D G3DSA:3.40.50.1100 42 155 4.3E-110 T 31-10-2018 Y89_0422 dd6caeff5547eebc34fd668cb5512b7e 457 Pfam PF00571 CBS domain 344 387 1.0E-9 T 31-10-2018 IPR000644 CBS domain Y89_5595 e973ce291de00638356234038f044834 289 SUPERFAMILY SSF82689 188 285 2.48E-16 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y89_5595 e973ce291de00638356234038f044834 289 Gene3D G3DSA:3.30.70.100 186 276 7.9E-7 T 31-10-2018 Y89_5595 e973ce291de00638356234038f044834 289 Gene3D G3DSA:2.30.30.60 136 185 5.1E-18 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_5595 e973ce291de00638356234038f044834 289 SUPERFAMILY SSF82861 35 118 1.15E-15 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y89_5595 e973ce291de00638356234038f044834 289 SUPERFAMILY SSF50182 121 186 9.48E-16 T 31-10-2018 IPR010920 LSM domain superfamily Y89_5595 e973ce291de00638356234038f044834 289 Pfam PF00924 Mechanosensitive ion channel 80 268 1.8E-36 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 PIRSF PIRSF029745 2 562 6.3E-152 T 31-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 Gene3D G3DSA:2.40.160.50 178 562 1.4E-86 T 31-10-2018 Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 Gene3D G3DSA:3.10.20.310 58 146 7.2E-18 T 31-10-2018 Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 205 525 6.4E-98 T 31-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 Pfam PF17287 POTRA domain 158 200 4.1E-15 T 31-10-2018 IPR035251 ShlB, POTRA domain Y89_0047 5cf64a5debc7251e65ba2c3b55c0a64e 562 Pfam PF08479 POTRA domain, ShlB-type 71 146 5.1E-27 T 31-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 101 121 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 63 83 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 122 142 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 46 63 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 157 183 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 205 229 4.6E-59 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 Pfam PF01578 Cytochrome C assembly protein 14 185 8.6E-26 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y89_3862 a8c0d69644bde6ff82929dc009b6fdff 251 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 46 229 2.0E-84 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_4271 15cae870d2995e3813d2677c278f3010 231 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 228 31.326 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 Pfam PF02107 Flagellar L-ring protein 44 230 3.3E-61 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 207 221 4.4E-26 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 170 186 4.4E-26 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 66 78 4.4E-26 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 191 205 4.4E-26 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_4271 15cae870d2995e3813d2677c278f3010 231 PRINTS PR01008 Flagellar L-ring protein signature 144 159 4.4E-26 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 Pfam PF03466 LysR substrate binding domain 91 295 3.4E-46 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 SUPERFAMILY SSF53850 91 299 5.31E-39 T 31-10-2018 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.0E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.0E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.0E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-25 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:1.10.10.10 1 89 1.9E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:3.40.190.10 163 270 1.7E-67 T 31-10-2018 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 Gene3D G3DSA:3.40.190.10 90 288 1.7E-67 T 31-10-2018 Y89_5701 87bb11c40d6046c2505bfc2eac48686e 301 SUPERFAMILY SSF46785 2 83 1.07E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2755 bbf54fa44e1b744a0e22d2c56150ffa0 458 SUPERFAMILY SSF143548 17 157 2.88E-44 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Y89_2755 bbf54fa44e1b744a0e22d2c56150ffa0 458 Pfam PF03313 Serine dehydratase alpha chain 187 452 8.4E-106 T 31-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Y89_2755 bbf54fa44e1b744a0e22d2c56150ffa0 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 455 4.3E-217 T 31-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y89_2755 bbf54fa44e1b744a0e22d2c56150ffa0 458 Gene3D G3DSA:3.30.1330.90 11 159 3.4E-54 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Y89_2755 bbf54fa44e1b744a0e22d2c56150ffa0 458 Pfam PF03315 Serine dehydratase beta chain 4 156 7.0E-58 T 31-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 301 3.4E-8 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 192 3.4E-8 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:1.10.10.1100 508 587 2.0E-84 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Pfam PF01571 Aminomethyltransferase folate-binding domain 619 884 2.6E-75 T 31-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:3.50.50.60 172 592 2.0E-84 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 2 1004 0.0 T 31-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 SUPERFAMILY SSF103025 613 895 1.4E-92 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:3.50.50.60 295 422 2.0E-84 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 102 6.3E-23 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:3.30.70.1400 672 895 2.2E-87 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 SUPERFAMILY SSF51905 167 455 3.15E-34 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:3.10.20.440 12 108 9.9E-7 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PIRSF PIRSF037980 1 1004 0.0 T 31-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 172 434 1.7E-12 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 SUPERFAMILY SSF101790 906 1003 1.16E-17 T 31-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 907 990 4.5E-11 T 31-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 172 194 3.5E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 284 292 3.5E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 459 477 3.5E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:2.40.30.110 909 1003 2.7E-7 T 31-10-2018 Y89_6157 bad021e76efbb0143c456d34f83eb385 1005 Gene3D G3DSA:3.30.1360.120 614 873 2.2E-87 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Y89_4970 403d2189b8e8b51ec27f358054951723 330 Gene3D G3DSA:2.40.10.350 164 241 7.6E-34 T 31-10-2018 Y89_4970 403d2189b8e8b51ec27f358054951723 330 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 4 261 9.3E-60 T 31-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y89_4970 403d2189b8e8b51ec27f358054951723 330 Pfam PF04085 rod shape-determining protein MreC 108 253 5.0E-38 T 31-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y89_4970 403d2189b8e8b51ec27f358054951723 330 PIRSF PIRSF038471 1 268 3.7E-74 T 31-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Y89_4970 403d2189b8e8b51ec27f358054951723 330 Gene3D G3DSA:2.40.10.340 106 251 7.6E-34 T 31-10-2018 Y89_3201 bc6e93dfe06204260b486ef82daddac7 270 Gene3D G3DSA:3.60.110.10 3 270 3.6E-77 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_3201 bc6e93dfe06204260b486ef82daddac7 270 Pfam PF00795 Carbon-nitrogen hydrolase 5 252 8.4E-44 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_3201 bc6e93dfe06204260b486ef82daddac7 270 SUPERFAMILY SSF56317 1 270 3.01E-68 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_3201 bc6e93dfe06204260b486ef82daddac7 270 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 144 164 - T 31-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 SMART SM00448 1 119 1.3E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 SMART SM00862 155 231 1.3E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 SUPERFAMILY SSF52172 1 180 8.09E-32 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 6.3E-19 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 Gene3D G3DSA:1.10.10.10 136 237 2.0E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 Gene3D G3DSA:3.40.50.2300 1 135 6.1E-30 T 31-10-2018 Y89_0992 a7bb8974a8556c8be1d4c715258bdd61 238 Pfam PF00072 Response regulator receiver domain 3 119 7.5E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 Gene3D G3DSA:3.50.50.60 7 310 9.1E-109 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2567 c05c73981d8460805cbb42439ddb847e 411 Pfam PF14759 Reductase C-terminal 322 403 8.7E-25 T 31-10-2018 IPR028202 Reductase, C-terminal Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 3.5E-19 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 3.5E-19 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 3.5E-19 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 3.5E-19 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.2E-25 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.2E-25 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 1.2E-25 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 1.2E-25 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.2E-25 T 31-10-2018 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 SUPERFAMILY SSF51905 145 315 5.0E-31 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2567 c05c73981d8460805cbb42439ddb847e 411 SUPERFAMILY SSF55424 315 403 1.65E-24 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 303 6.3E-66 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 Gene3D G3DSA:3.30.390.30 322 406 1.7E-29 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_2567 c05c73981d8460805cbb42439ddb847e 411 SUPERFAMILY SSF51905 4 192 3.89E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2567 c05c73981d8460805cbb42439ddb847e 411 Gene3D G3DSA:3.50.50.60 114 239 9.1E-109 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3488 07ae028884b25a244337b8444770a5e3 346 SUPERFAMILY SSF102114 100 303 7.85E-12 T 31-10-2018 Y89_3488 07ae028884b25a244337b8444770a5e3 346 Pfam PF04055 Radical SAM superfamily 102 261 9.6E-11 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_3488 07ae028884b25a244337b8444770a5e3 346 PIRSF PIRSF006004 1 345 8.8E-97 T 31-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Y89_3488 07ae028884b25a244337b8444770a5e3 346 Gene3D G3DSA:3.20.20.70 65 319 5.6E-68 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 SUPERFAMILY SSF52096 27 285 1.27E-87 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1907 f6300e4234e542d1542a963ffe678d82 290 Pfam PF01039 Carboxyl transferase domain 98 242 1.1E-16 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 283 37.97 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 Gene3D G3DSA:3.90.226.10 27 287 3.4E-85 T 31-10-2018 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 6.0E-38 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 6.0E-38 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 6.0E-38 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 6.0E-38 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 6.0E-38 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1907 f6300e4234e542d1542a963ffe678d82 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 14 286 2.4E-132 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 SUPERFAMILY SSF56322 2 415 1.83E-138 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 Gene3D G3DSA:3.60.120.10 1 416 9.9E-158 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 Pfam PF04715 Anthranilate synthase component I, N terminal region 34 109 3.5E-14 T 31-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 Pfam PF00425 chorismate binding enzyme 153 406 4.9E-99 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_3574 539278af7c877733c3d92ff4a513e6df 424 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 64 410 2.5E-115 T 31-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 PRINTS PR00095 Anthranilate synthase component I signature 363 377 2.6E-16 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 PRINTS PR00095 Anthranilate synthase component I signature 254 267 2.6E-16 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 PRINTS PR00095 Anthranilate synthase component I signature 268 281 2.6E-16 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_3574 539278af7c877733c3d92ff4a513e6df 424 PRINTS PR00095 Anthranilate synthase component I signature 348 362 2.6E-16 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 35.582 T 31-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 Pfam PF01479 S4 domain 97 143 1.2E-20 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 7.5E-34 T 31-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 Gene3D G3DSA:1.10.1050.10 1 102 2.8E-45 T 31-10-2018 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 SMART SM00363 96 160 1.7E-19 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 31-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 SUPERFAMILY SSF55174 3 206 4.97E-72 T 31-10-2018 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 Gene3D G3DSA:3.10.290.10 103 191 1.0E-32 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 1.1E-80 T 31-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y89_0783 71795eb63bdb23b8ba831912c0915bac 206 SMART SM01390 3 95 3.3E-52 T 31-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Y89_0896 6d2144599c518e13ebb70ffaa5a769e5 434 Gene3D G3DSA:1.20.1250.20 13 428 7.5E-83 T 31-10-2018 Y89_0896 6d2144599c518e13ebb70ffaa5a769e5 434 SUPERFAMILY SSF103473 18 426 3.66E-81 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0896 6d2144599c518e13ebb70ffaa5a769e5 434 Pfam PF07690 Major Facilitator Superfamily 30 392 2.6E-49 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 474 4.6E-129 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 Gene3D G3DSA:2.20.200.10 102 363 4.1E-134 T 31-10-2018 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 Pfam PF02321 Outer membrane efflux protein 291 472 1.8E-30 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 Pfam PF02321 Outer membrane efflux protein 73 265 1.9E-28 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 Gene3D G3DSA:1.20.1600.10 55 475 4.1E-134 T 31-10-2018 Y89_2666 1ac97dacd6634658f21c869a2e228648 498 SUPERFAMILY SSF56954 2 477 2.75E-118 T 31-10-2018 Y89_3852 b50c6c17c424f242482b765ee792408c 366 SUPERFAMILY SSF56266 1 362 2.62E-115 T 31-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_3852 b50c6c17c424f242482b765ee792408c 366 Gene3D G3DSA:3.60.70.12 1 363 1.9E-130 T 31-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_3852 b50c6c17c424f242482b765ee792408c 366 Pfam PF03576 Peptidase family S58 19 344 2.5E-109 T 31-10-2018 IPR005321 Peptidase S58, DmpA Y89_2710 7a37a634980b1d18b5351482468e1870 339 SUPERFAMILY SSF51735 119 274 4.99E-33 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2710 7a37a634980b1d18b5351482468e1870 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 9.5E-8 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_2710 7a37a634980b1d18b5351482468e1870 339 Pfam PF13602 Zinc-binding dehydrogenase 189 335 2.7E-17 T 31-10-2018 Y89_2710 7a37a634980b1d18b5351482468e1870 339 Gene3D G3DSA:3.90.180.10 9 332 1.6E-74 T 31-10-2018 Y89_2710 7a37a634980b1d18b5351482468e1870 339 SUPERFAMILY SSF50129 3 151 2.65E-28 T 31-10-2018 IPR011032 GroES-like superfamily Y89_2710 7a37a634980b1d18b5351482468e1870 339 Gene3D G3DSA:3.40.50.720 126 305 1.6E-74 T 31-10-2018 Y89_2710 7a37a634980b1d18b5351482468e1870 339 SMART SM00829 11 335 2.1E-13 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 Gene3D G3DSA:2.60.120.10 4 93 1.3E-7 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 244 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 Gene3D G3DSA:1.10.10.60 149 254 1.3E-19 T 31-10-2018 Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 Pfam PF12833 Helix-turn-helix domain 175 250 6.5E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 SUPERFAMILY SSF46689 202 250 3.54E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 SUPERFAMILY SSF51182 7 173 1.27E-19 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1096 3cd2a12cc775d91ae8d33752078a4bab 262 SMART SM00342 166 248 9.1E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 SUPERFAMILY SSF52540 5 335 1.69E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 Gene3D G3DSA:3.30.450.90 1 100 9.9E-38 T 31-10-2018 Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 SMART SM00382 122 256 0.0063 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 6.8E-153 T 31-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 Pfam PF00437 Type II/IV secretion system protein 11 269 1.7E-45 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_0418 a93945545a393f8ff423720c7e3c3baf 344 Gene3D G3DSA:3.40.50.300 101 344 2.4E-110 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Gene3D G3DSA:3.50.50.60 245 361 9.4E-122 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 TIGRFAM TIGR02053 MerA: mercury(II) reductase 100 561 5.7E-189 T 31-10-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 100 418 2.6E-64 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Gene3D G3DSA:3.50.50.60 102 419 9.4E-122 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 237 254 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 534 553 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 292 307 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 110 128 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 13 23 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 272 289 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 145 164 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PRINTS PR00945 Mercuric reductase class II signature 469 489 2.8E-93 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 SUPERFAMILY SSF51905 98 427 2.21E-53 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Pfam PF00403 Heavy-metal-associated domain 5 62 9.5E-10 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 SUPERFAMILY SSF55008 2 68 1.7E-17 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 31-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 133 143 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 PIRSF PIRSF000350 1 561 6.3E-266 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 SUPERFAMILY SSF55424 436 559 2.58E-33 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 437 545 1.4E-29 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Gene3D G3DSA:3.30.70.100 1 69 4.3E-21 T 31-10-2018 Y89_4708 5c4767a1b8509446523ac3c8e06568ba 561 Gene3D G3DSA:3.30.390.30 436 561 4.1E-47 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 SUPERFAMILY SSF52518 357 558 1.92E-55 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 4.0E-36 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Gene3D G3DSA:3.40.50.970 2 175 4.1E-51 T 31-10-2018 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 2.4E-41 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 SUPERFAMILY SSF52467 181 346 3.45E-42 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_6035 f3dccf4c8b943cb09440794049052c75 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 SUPERFAMILY SSF52518 4 182 1.1E-44 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Gene3D G3DSA:3.40.50.970 348 572 1.0E-59 T 31-10-2018 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 318 2.9E-29 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_6035 f3dccf4c8b943cb09440794049052c75 572 Gene3D G3DSA:3.40.50.1220 177 332 2.0E-47 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.1380 936 1072 8.7E-38 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.30.470.20 665 935 1.7E-118 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52440 1 127 2.01E-49 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SMART SM01096 424 547 6.4E-75 T 31-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 1.0E-32 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-72 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 4.0E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.30.470.20 119 403 2.1E-131 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF48108 396 554 6.28E-53 T 31-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.126 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF56059 128 401 1.94E-109 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.20 1 116 1.0E-49 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF56059 673 933 6.72E-102 T 31-10-2018 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52440 557 675 2.3E-49 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.405 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:1.10.1030.10 404 553 3.1E-52 T 31-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SUPERFAMILY SSF52335 938 1069 1.01E-39 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02142 MGS-like domain 958 1041 2.2E-19 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 8.7E-41 T 31-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 SMART SM00851 955 1041 2.7E-32 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain Y89_5368 751e582429bae175bf7d3bb7ae37359c 1073 Gene3D G3DSA:3.40.50.20 554 662 4.4E-49 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 1.2E-51 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.5E-18 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 SUPERFAMILY SSF47203 230 382 2.9E-55 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:1.10.540.10 1 118 5.4E-23 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 2.4E-25 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:2.40.110.10 120 238 1.3E-39 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 Gene3D G3DSA:1.20.140.10 239 383 4.0E-54 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 3 88 1.6 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 129 195 0.029 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 PIRSF PIRSF016578 235 383 5.1E-13 T 31-10-2018 Y89_5649 e293d9e64f6f5d29c58eb330e921e681 386 SUPERFAMILY SSF56645 1 243 6.54E-69 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 Pfam PF12680 SnoaL-like domain 23 121 3.0E-10 T 31-10-2018 IPR037401 SnoaL-like domain Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 Pfam PF12833 Helix-turn-helix domain 183 263 8.8E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 Gene3D G3DSA:1.10.10.60 210 267 4.7E-14 T 31-10-2018 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 Gene3D G3DSA:3.10.450.50 14 128 6.4E-16 T 31-10-2018 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 SUPERFAMILY SSF54427 15 128 1.41E-18 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 SMART SM00342 177 261 1.3E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 SUPERFAMILY SSF46689 229 263 7.62E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 214 257 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1584 3e0edcdb18b0fe91a01b0d059f2d4cd3 268 Gene3D G3DSA:1.10.10.60 157 209 2.3E-6 T 31-10-2018 Y89_3190 1a86c9182a0ece00e3b344299870385d 610 PIRSF PIRSF001589 1 609 6.4E-142 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_3190 1a86c9182a0ece00e3b344299870385d 610 SUPERFAMILY SSF52402 233 574 4.44E-69 T 31-10-2018 Y89_3190 1a86c9182a0ece00e3b344299870385d 610 Pfam PF13537 Glutamine amidotransferase domain 48 167 1.3E-45 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Y89_3190 1a86c9182a0ece00e3b344299870385d 610 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 532 5.1E-149 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_3190 1a86c9182a0ece00e3b344299870385d 610 Pfam PF00733 Asparagine synthase 243 580 5.3E-95 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y89_3190 1a86c9182a0ece00e3b344299870385d 610 SUPERFAMILY SSF56235 1 224 1.54E-62 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_3190 1a86c9182a0ece00e3b344299870385d 610 Gene3D G3DSA:3.60.20.10 2 182 2.3E-61 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4750 16d4ae1bd59b3b57d56b31183512e730 403 SUPERFAMILY SSF53067 19 144 6.6E-9 T 31-10-2018 Y89_4750 16d4ae1bd59b3b57d56b31183512e730 403 Pfam PF05134 Type II secretion system (T2SS), protein L 39 169 1.3E-6 T 31-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain Y89_4750 16d4ae1bd59b3b57d56b31183512e730 403 Gene3D G3DSA:3.30.420.380 25 170 1.0E-8 T 31-10-2018 Y89_4750 16d4ae1bd59b3b57d56b31183512e730 403 Pfam PF12693 GspL periplasmic domain 229 402 2.5E-44 T 31-10-2018 IPR025691 GspL periplasmic domain Y89_2347 dc1e65e161f7409d26c7ea16ae078120 496 Gene3D G3DSA:3.40.50.620 3 212 2.3E-38 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2347 dc1e65e161f7409d26c7ea16ae078120 496 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 24 209 2.4E-10 T 31-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Y89_2347 dc1e65e161f7409d26c7ea16ae078120 496 TIGRFAM TIGR03183 DNA_S_dndC: putative sulfurtransferase DndC 9 453 1.1E-204 T 31-10-2018 IPR017598 Sulphur transferase DndC, putative Y89_2347 dc1e65e161f7409d26c7ea16ae078120 496 SUPERFAMILY SSF52402 7 211 6.16E-27 T 31-10-2018 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 SMART SM00382 513 697 1.3E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 SUPERFAMILY SSF52540 483 709 3.27E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF00664 ABC transporter transmembrane region 175 436 1.7E-38 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF03412 Peptidase C39 family 15 143 4.3E-37 T 31-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:3.90.70.10 7 151 1.3E-40 T 31-10-2018 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:1.20.1560.10 156 470 4.3E-63 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Pfam PF00005 ABC transporter 504 653 1.1E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 Gene3D G3DSA:3.40.50.300 478 719 2.9E-73 T 31-10-2018 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 ProSitePatterns PS00211 ABC transporters family signature. 625 639 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0879 e7a7617665bbd96d2eebf210e34772a1 719 SUPERFAMILY SSF90123 163 469 1.11E-56 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 Gene3D G3DSA:1.10.8.450 235 267 3.0E-84 T 31-10-2018 Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 Gene3D G3DSA:3.40.190.10 29 300 3.0E-84 T 31-10-2018 Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 29 309 8.7E-95 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 Pfam PF09084 NMT1/THI5 like 64 242 4.1E-18 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 SMART SM00062 28 240 6.9E-4 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 SUPERFAMILY SSF53850 39 254 1.92E-46 T 31-10-2018 Y89_2492 6e8e25ad5185de2f69c7d76172e29c4d 328 Gene3D G3DSA:3.40.190.10 104 203 3.0E-84 T 31-10-2018 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 Pfam PF07664 Ferrous iron transport protein B C terminus 452 504 5.6E-22 T 31-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 Pfam PF07670 Nucleoside recognition 349 442 2.1E-13 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 Pfam PF07670 Nucleoside recognition 509 687 2.3E-36 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 SUPERFAMILY SSF52540 4 167 1.62E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 685 1.0E-209 T 31-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 Pfam PF02421 Ferrous iron transport protein B 6 163 8.0E-63 T 31-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Y89_4843 7d2ded031bb36819b1012d48ae982d83 766 Gene3D G3DSA:3.40.50.300 2 168 1.6E-44 T 31-10-2018 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Pfam PF13426 PAS domain 31 130 9.9E-11 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Pfam PF13426 PAS domain 156 257 1.6E-15 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00091 15 84 1.4 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00091 143 212 4.3E-6 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 266 1.6E-25 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 138 6.7E-15 T 31-10-2018 IPR000014 PAS domain Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Gene3D G3DSA:3.40.50.2300 533 649 1.1E-18 T 31-10-2018 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00387 388 508 1.5E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 451 2.8E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 465 2.8E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 505 2.8E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 486 2.8E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Gene3D G3DSA:3.30.565.10 348 513 2.3E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 505 3.7E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Gene3D G3DSA:3.30.450.20 145 277 1.4E-31 T 31-10-2018 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Gene3D G3DSA:3.30.450.20 12 144 1.2E-22 T 31-10-2018 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Pfam PF00072 Response regulator receiver domain 537 620 1.0E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Pfam PF00512 His Kinase A (phospho-acceptor) domain 281 345 1.1E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SUPERFAMILY SSF55785 127 254 2.62E-29 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00086 217 259 6.3E-4 T 31-10-2018 IPR001610 PAC motif Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00086 89 131 1.9 T 31-10-2018 IPR001610 PAC motif Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 Gene3D G3DSA:1.10.287.130 278 346 1.2E-21 T 31-10-2018 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SUPERFAMILY SSF52172 535 647 9.68E-21 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SUPERFAMILY SSF55874 338 508 3.8E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SUPERFAMILY SSF55785 28 140 4.05E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00388 281 347 6.3E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SUPERFAMILY SSF47384 266 344 4.51E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3097 8289e79f0e9904baa11106e80fa23e1d 650 SMART SM00448 535 643 4.0E-9 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2245 21cca80920b169709320103531f92a78 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 67 1.8E-19 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_2245 21cca80920b169709320103531f92a78 72 SUPERFAMILY SSF47413 2 69 2.73E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2245 21cca80920b169709320103531f92a78 72 Gene3D G3DSA:1.10.260.40 5 65 3.8E-7 T 31-10-2018 Y89_3684 3af88130d1ee5e2ef28ef4cf19836c9f 297 Pfam PF01758 Sodium Bile acid symporter family 12 194 2.4E-33 T 31-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Y89_3684 3af88130d1ee5e2ef28ef4cf19836c9f 297 Gene3D G3DSA:1.20.1530.20 3 289 2.4E-76 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 210 229 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 406 426 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 345 367 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 182 200 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 91 113 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 PRINTS PR00175 Sodium/alanine symporter signature 303 321 9.2E-59 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 Pfam PF01235 Sodium:alanine symporter family 53 448 1.9E-160 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1385 25e7bd0908dec60807b7b23ca29e5615 471 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 437 2.3E-152 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_1287 ede49dc63b214523104994bdc0a3820c 226 SUPERFAMILY SSF160246 3 66 1.52E-13 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_3977 39fd59ed9b863b79053078483aa00a80 405 Pfam PF13361 UvrD-like helicase C-terminal domain 312 339 1.3E-6 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_3977 39fd59ed9b863b79053078483aa00a80 405 Gene3D G3DSA:3.40.50.300 209 397 1.8E-19 T 31-10-2018 Y89_3977 39fd59ed9b863b79053078483aa00a80 405 SUPERFAMILY SSF52540 1 385 1.74E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.3E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 8.3E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 8.3E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 2.4E-101 T 31-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.2E-37 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 Pfam PF00106 short chain dehydrogenase 6 194 1.7E-54 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 Gene3D G3DSA:3.40.50.720 2 256 7.7E-78 T 31-10-2018 Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3320 09bbd00ee42a191d0737cd1e45f732cd 256 SUPERFAMILY SSF51735 1 255 8.06E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5373 8fff98e04163581c123b76616fcdf951 637 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 36.88 T 31-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Gene3D G3DSA:2.60.34.10 383 523 2.2E-65 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Gene3D G3DSA:3.30.420.40 180 366 1.4E-168 T 31-10-2018 Y89_5373 8fff98e04163581c123b76616fcdf951 637 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 SUPERFAMILY SSF100934 507 603 4.71E-23 T 31-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 SUPERFAMILY SSF53067 187 382 2.07E-69 T 31-10-2018 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Pfam PF00012 Hsp70 protein 4 603 9.0E-265 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 1.4E-290 T 31-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Gene3D G3DSA:3.30.420.40 5 379 1.4E-168 T 31-10-2018 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 388 407 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 334 350 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 365 385 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 54 62 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 31 43 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 138 158 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 3 16 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 469 485 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 PRINTS PR00301 70kDa heat shock protein signature 198 208 8.0E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 SUPERFAMILY SSF53067 4 183 8.85E-66 T 31-10-2018 Y89_5373 8fff98e04163581c123b76616fcdf951 637 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Gene3D G3DSA:1.20.1270.10 524 602 5.2E-24 T 31-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Y89_5373 8fff98e04163581c123b76616fcdf951 637 Gene3D G3DSA:3.90.640.10 229 316 1.4E-168 T 31-10-2018 Y89_5373 8fff98e04163581c123b76616fcdf951 637 SUPERFAMILY SSF100920 384 539 3.66E-60 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 SUPERFAMILY SSF46689 292 341 4.93E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 SMART SM00342 256 338 9.3E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 Gene3D G3DSA:1.10.10.60 235 345 2.4E-22 T 31-10-2018 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 6.0E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 6.0E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 Pfam PF12833 Helix-turn-helix domain 262 339 2.9E-14 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1925 57e84b8d2934918246a0ee7f0b78b87e 345 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 27 210 6.5E-48 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_6041 ecde048ef575456761d4e00ccc47b439 117 Pfam PF01042 Endoribonuclease L-PSP 9 115 8.2E-25 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_6041 ecde048ef575456761d4e00ccc47b439 117 Gene3D G3DSA:3.30.1330.40 1 116 3.4E-40 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_6041 ecde048ef575456761d4e00ccc47b439 117 SUPERFAMILY SSF55298 9 117 5.97E-33 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_6321 f465f36d36677e45a271008d44e16558 640 SUPERFAMILY SSF46785 505 631 4.35E-35 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6321 f465f36d36677e45a271008d44e16558 640 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 24 240 4.6E-90 T 31-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y89_6321 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:1.10.10.10 509 579 1.1E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6321 f465f36d36677e45a271008d44e16558 640 Pfam PF07514 Putative helicase 24 338 3.4E-121 T 31-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y89_6321 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:1.10.3210.40 25 247 1.2E-37 T 31-10-2018 Y89_6321 f465f36d36677e45a271008d44e16558 640 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 508 630 1.4E-38 T 31-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y89_6321 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:2.40.10.200 525 626 1.1E-20 T 31-10-2018 Y89_5146 f465f36d36677e45a271008d44e16558 640 SUPERFAMILY SSF46785 505 631 4.35E-35 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5146 f465f36d36677e45a271008d44e16558 640 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 24 240 4.6E-90 T 31-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y89_5146 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:1.10.10.10 509 579 1.1E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5146 f465f36d36677e45a271008d44e16558 640 Pfam PF07514 Putative helicase 24 338 3.4E-121 T 31-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y89_5146 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:1.10.3210.40 25 247 1.2E-37 T 31-10-2018 Y89_5146 f465f36d36677e45a271008d44e16558 640 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 508 630 1.4E-38 T 31-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y89_5146 f465f36d36677e45a271008d44e16558 640 Gene3D G3DSA:2.40.10.200 525 626 1.1E-20 T 31-10-2018 Y89_2190 41cd0b5ab04d0a48574ec4422ae7d8e4 375 Pfam PF00246 Zinc carboxypeptidase 134 339 4.4E-18 T 31-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Y89_2190 41cd0b5ab04d0a48574ec4422ae7d8e4 375 Gene3D G3DSA:3.40.630.10 114 375 6.9E-69 T 31-10-2018 Y89_2190 41cd0b5ab04d0a48574ec4422ae7d8e4 375 Gene3D G3DSA:2.60.40.3120 1 113 4.1E-49 T 31-10-2018 Y89_2190 41cd0b5ab04d0a48574ec4422ae7d8e4 375 SUPERFAMILY SSF53187 107 373 9.98E-53 T 31-10-2018 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 267 27.805 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 99 1.1E-23 T 31-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 Gene3D G3DSA:3.40.50.720 2 164 8.9E-53 T 31-10-2018 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 PIRSF PIRSF000193 3 270 1.2E-83 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 SUPERFAMILY SSF48179 162 270 1.87E-35 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 267 1.7E-80 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 SUPERFAMILY SSF51735 5 160 6.61E-40 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 6.6E-38 T 31-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Y89_0416 d9ebd3465c87ae6efadb15c9dde9714f 273 Gene3D G3DSA:1.10.3730.10 165 271 1.7E-42 T 31-10-2018 Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.40.50.2300 245 375 2.3E-27 T 31-10-2018 Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.30.70.270 376 540 1.2E-52 T 31-10-2018 Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 SMART SM00267 366 537 2.6E-55 T 31-10-2018 IPR000160 GGDEF domain Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF52172 246 378 7.26E-30 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 374 536 2.1E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF55073 382 539 5.49E-48 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 Pfam PF00990 Diguanylate cyclase, GGDEF domain 379 533 3.3E-41 T 31-10-2018 IPR000160 GGDEF domain Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 Pfam PF00072 Response regulator receiver domain 252 363 1.3E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 SMART SM00448 250 363 2.8E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 SUPERFAMILY SSF52172 134 243 3.22E-5 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5513 daafc09914968fb23bbe6aca45e9a83f 542 Gene3D G3DSA:3.40.50.2300 124 244 9.8E-7 T 31-10-2018 Y89_2099 a8fdf5b17055d23ab928061fe87d8f43 261 SMART SM00062 27 256 1.7E-62 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2099 a8fdf5b17055d23ab928061fe87d8f43 261 SUPERFAMILY SSF53850 26 258 2.85E-60 T 31-10-2018 Y89_2099 a8fdf5b17055d23ab928061fe87d8f43 261 Gene3D G3DSA:3.40.190.10 113 213 5.4E-73 T 31-10-2018 Y89_2099 a8fdf5b17055d23ab928061fe87d8f43 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.7E-57 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2099 a8fdf5b17055d23ab928061fe87d8f43 261 Gene3D G3DSA:3.40.190.10 29 252 5.4E-73 T 31-10-2018 Y89_5896 b5c913b1826f79b4a7eb80bdd418081b 454 Gene3D G3DSA:2.40.320.10 1 203 1.8E-34 T 31-10-2018 Y89_5896 b5c913b1826f79b4a7eb80bdd418081b 454 Pfam PF01928 CYTH domain 3 201 5.5E-38 T 31-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Y89_5896 b5c913b1826f79b4a7eb80bdd418081b 454 SUPERFAMILY SSF55154 1 211 1.96E-40 T 31-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 Y89_5896 b5c913b1826f79b4a7eb80bdd418081b 454 SMART SM01118 2 207 1.4E-32 T 31-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 SUPERFAMILY SSF63380 100 179 8.96E-17 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 Pfam PF00175 Oxidoreductase NAD-binding domain 196 254 3.4E-6 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 Gene3D G3DSA:2.40.30.10 93 183 1.1E-13 T 31-10-2018 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 3.7E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 134 141 3.7E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 195 214 3.7E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 Gene3D G3DSA:3.40.50.80 188 307 6.8E-17 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 SUPERFAMILY SSF54292 8 85 5.77E-23 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 Gene3D G3DSA:3.10.20.30 3 90 5.7E-22 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 214 7.7E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 134 141 7.7E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 PRINTS PR00410 Phenol hydroxylase reductase family signature 288 296 7.7E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 76 1.9E-15 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_4816 5169a097b7411cf2b32535ffbf508d92 308 SUPERFAMILY SSF52343 188 305 7.6E-21 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_0702 69c56e5ced78f396c29c3d162cf56ece 329 SUPERFAMILY SSF69279 4 173 4.02E-27 T 31-10-2018 Y89_0702 69c56e5ced78f396c29c3d162cf56ece 329 Pfam PF05954 Phage late control gene D protein (GPD) 38 312 5.7E-22 T 31-10-2018 Y89_0396 9433f0a69551f271c5f8d5c3721884fc 223 Gene3D G3DSA:3.40.50.300 1 223 1.1E-64 T 31-10-2018 Y89_0396 9433f0a69551f271c5f8d5c3721884fc 223 SMART SM00382 27 214 6.8E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0396 9433f0a69551f271c5f8d5c3721884fc 223 Pfam PF00005 ABC transporter 18 165 1.1E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0396 9433f0a69551f271c5f8d5c3721884fc 223 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 1.0E-85 T 31-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 Y89_0396 9433f0a69551f271c5f8d5c3721884fc 223 SUPERFAMILY SSF52540 1 218 1.06E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3399 35e4bc0ad35f0467eadb1aa3142e02ae 653 Pfam PF00593 TonB dependent receptor 243 649 8.4E-62 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3399 35e4bc0ad35f0467eadb1aa3142e02ae 653 Gene3D G3DSA:2.170.130.10 34 163 1.1E-40 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3399 35e4bc0ad35f0467eadb1aa3142e02ae 653 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 158 6.2E-26 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3399 35e4bc0ad35f0467eadb1aa3142e02ae 653 Gene3D G3DSA:2.40.170.20 169 653 5.1E-137 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_3399 35e4bc0ad35f0467eadb1aa3142e02ae 653 SUPERFAMILY SSF56935 37 653 2.54E-126 T 31-10-2018 Y89_0667 3cc81b7469f7d650c5b0a2a7ffb846e9 924 Gene3D G3DSA:2.60.450.10 151 284 1.0E-7 T 31-10-2018 Y89_0667 3cc81b7469f7d650c5b0a2a7ffb846e9 924 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 15 899 20.56 T 31-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 Y89_0667 3cc81b7469f7d650c5b0a2a7ffb846e9 924 Pfam PF04453 Organic solvent tolerance protein 403 831 2.9E-119 T 31-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 Y89_0667 3cc81b7469f7d650c5b0a2a7ffb846e9 924 Pfam PF03968 OstA-like protein 158 291 6.3E-11 T 31-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 10 562 43.855 T 31-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Pfam PF03717 Penicillin-binding Protein dimerisation domain 58 207 1.4E-17 T 31-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Gene3D G3DSA:3.90.1310.30 50 222 1.5E-48 T 31-10-2018 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Pfam PF00905 Penicillin binding protein transpeptidase domain 247 546 1.7E-85 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Gene3D G3DSA:3.40.710.10 283 464 3.4E-123 T 31-10-2018 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 SUPERFAMILY SSF56601 174 561 8.54E-92 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 Gene3D G3DSA:3.30.450.330 223 550 3.4E-123 T 31-10-2018 Y89_4907 d8b043b32f68e128b57490b817a9f3ec 579 SUPERFAMILY SSF56519 54 221 1.83E-44 T 31-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Y89_0217 d6abc9a2ab46de7d270847ffe7d0c219 99 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 94 7.0E-39 T 31-10-2018 IPR009662 Malonate decarboxylase delta subunit Y89_0217 d6abc9a2ab46de7d270847ffe7d0c219 99 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 2 95 2.5E-35 T 31-10-2018 IPR009662 Malonate decarboxylase delta subunit Y89_0217 d6abc9a2ab46de7d270847ffe7d0c219 99 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 17 96 3.9E-26 T 31-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Y89_0217 d6abc9a2ab46de7d270847ffe7d0c219 99 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 99 53.549 T 31-10-2018 IPR009662 Malonate decarboxylase delta subunit Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 Gene3D G3DSA:1.10.10.10 1 85 2.3E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 Pfam PF03466 LysR substrate binding domain 88 296 2.4E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 Gene3D G3DSA:3.40.190.10 167 272 4.6E-49 T 31-10-2018 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 SUPERFAMILY SSF53850 91 299 5.23E-29 T 31-10-2018 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.1E-22 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 SUPERFAMILY SSF46785 3 87 1.85E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1251 cc4644c1293c509dcb08a5b6f3bd1b93 302 Gene3D G3DSA:3.40.190.10 94 290 4.6E-49 T 31-10-2018 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 Gene3D G3DSA:1.10.287.950 212 541 4.2E-63 T 31-10-2018 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 182 1.3E-20 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 SMART SM00304 213 265 1.4E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 504 2.7E-34 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 1.8E-18 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 17 1.8E-18 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 1.8E-18 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 300 329 1.8E-18 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 Pfam PF00672 HAMP domain 213 261 1.2E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 SUPERFAMILY SSF58104 233 541 3.27E-61 T 31-10-2018 Y89_1318 91ad9e6fe78594f431fb5fcfd17ef24f 541 SMART SM00283 273 540 3.8E-47 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5995 2261613ed3356eee5a90a723ab47d684 287 Gene3D G3DSA:3.40.190.10 34 250 3.2E-65 T 31-10-2018 Y89_5995 2261613ed3356eee5a90a723ab47d684 287 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 247 8.1E-87 T 31-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Y89_5995 2261613ed3356eee5a90a723ab47d684 287 SUPERFAMILY SSF53850 45 239 3.31E-41 T 31-10-2018 Y89_5995 2261613ed3356eee5a90a723ab47d684 287 Gene3D G3DSA:3.40.190.10 115 223 3.2E-65 T 31-10-2018 Y89_5995 2261613ed3356eee5a90a723ab47d684 287 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 34 270 1.9E-73 T 31-10-2018 Y89_0220 fd0dde7e87680ff192f8a36e999015a1 230 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 29 221 5.4E-58 T 31-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 Y89_0220 fd0dde7e87680ff192f8a36e999015a1 230 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 29 222 1.2E-54 T 31-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 Y89_0220 fd0dde7e87680ff192f8a36e999015a1 230 Hamap MF_00650 Phosphoribosyl-dephospho-CoA transferase [mdcG]. 26 227 37.241 T 31-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 Y89_3930 f30a20ed74adc32badd07bceb7aa2a39 503 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 448 1.3E-46 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_3930 f30a20ed74adc32badd07bceb7aa2a39 503 Gene3D G3DSA:1.10.4160.10 18 448 1.3E-30 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_3930 f30a20ed74adc32badd07bceb7aa2a39 503 PIRSF PIRSF002744 1 483 2.5E-96 T 31-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 Pfam PF07883 Cupin domain 33 93 1.2E-6 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 Pfam PF12833 Helix-turn-helix domain 188 264 1.0E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 219 260 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 Gene3D G3DSA:1.10.10.60 166 268 6.0E-21 T 31-10-2018 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 SUPERFAMILY SSF51182 13 219 1.03E-24 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 SUPERFAMILY SSF46689 218 263 1.39E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 233 248 7.9E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 264 7.9E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 Gene3D G3DSA:2.60.120.10 22 99 3.9E-9 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1196 4f513e90a9027a3e258cbfbc562165fe 270 SMART SM00342 182 264 5.1E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4462 22fe643c9a5e21234f3f42b5a4eda2d3 340 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 333 9.4E-138 T 31-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y89_4462 22fe643c9a5e21234f3f42b5a4eda2d3 340 SUPERFAMILY SSF55729 1 334 2.41E-128 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4462 22fe643c9a5e21234f3f42b5a4eda2d3 340 Gene3D G3DSA:3.40.630.30 1 270 3.6E-118 T 31-10-2018 Y89_4462 22fe643c9a5e21234f3f42b5a4eda2d3 340 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 2 334 1.8E-144 T 31-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y89_4462 22fe643c9a5e21234f3f42b5a4eda2d3 340 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 2 334 1.2E-155 T 31-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 SUPERFAMILY SSF47203 287 475 9.83E-48 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Gene3D G3DSA:2.40.110.10 161 286 1.0E-27 T 31-10-2018 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Gene3D G3DSA:1.10.540.10 21 160 8.3E-17 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 SUPERFAMILY SSF56645 38 277 7.33E-60 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 5.1E-18 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 592 2.6E-35 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 35 7.2E-11 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 158 2.7E-12 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Gene3D G3DSA:1.20.140.10 287 456 2.4E-41 T 31-10-2018 Y89_0527 0c9a92ede6af805976984ae56bc9fb07 601 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 8.2E-20 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3804 13cb6d4b99de632e187177daff6ff097 198 SMART SM00493 80 164 1.5E-14 T 31-10-2018 IPR006171 TOPRIM domain Y89_3804 13cb6d4b99de632e187177daff6ff097 198 Gene3D G3DSA:3.40.1360.10 77 197 1.2E-38 T 31-10-2018 Y89_3804 13cb6d4b99de632e187177daff6ff097 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 195 2.1E-72 T 31-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Y89_3804 13cb6d4b99de632e187177daff6ff097 198 Pfam PF13662 Toprim domain 81 170 9.6E-24 T 31-10-2018 IPR006171 TOPRIM domain Y89_3804 13cb6d4b99de632e187177daff6ff097 198 Gene3D G3DSA:1.10.8.420 1 52 2.3E-16 T 31-10-2018 Y89_3804 13cb6d4b99de632e187177daff6ff097 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 31-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 Y89_3804 13cb6d4b99de632e187177daff6ff097 198 Pfam PF02132 RecR protein 41 78 2.3E-16 T 31-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Y89_3804 13cb6d4b99de632e187177daff6ff097 198 SUPERFAMILY SSF111304 3 197 4.45E-70 T 31-10-2018 IPR023627 Recombination protein RecR Y89_3804 13cb6d4b99de632e187177daff6ff097 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 101.113 T 31-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 SUPERFAMILY SSF46689 9 76 4.14E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 8.6E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 SUPERFAMILY SSF48498 87 195 1.14E-9 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 Pfam PF13305 WHG domain 87 173 8.7E-8 T 31-10-2018 IPR025996 WHG domain Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2063 0e71736700f26cd0b7393ffc6f605ef9 212 Gene3D G3DSA:1.10.357.10 9 192 2.1E-30 T 31-10-2018 Y89_1355 2d64d8802a11240e54cb4c0f5097ed97 244 Pfam PF12679 ABC-2 family transporter protein 67 237 5.8E-9 T 31-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 Y89_4082 0ad99d4bc145a1e0130e329a0bb77b46 314 Gene3D G3DSA:3.10.310.10 134 290 4.8E-118 T 31-10-2018 Y89_4082 0ad99d4bc145a1e0130e329a0bb77b46 314 Gene3D G3DSA:3.10.310.10 6 308 4.8E-118 T 31-10-2018 Y89_4082 0ad99d4bc145a1e0130e329a0bb77b46 314 Pfam PF05544 Proline racemase 6 312 8.1E-111 T 31-10-2018 IPR008794 Proline racemase family Y89_4082 0ad99d4bc145a1e0130e329a0bb77b46 314 SUPERFAMILY SSF54506 2 312 1.23E-100 T 31-10-2018 Y89_4082 0ad99d4bc145a1e0130e329a0bb77b46 314 PIRSF PIRSF029792 1 313 2.2E-95 T 31-10-2018 IPR008794 Proline racemase family Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:3.40.190.10 95 296 5.6E-59 T 31-10-2018 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 4.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 4.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 4.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 Pfam PF03466 LysR substrate binding domain 99 301 4.6E-23 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:1.10.10.10 2 88 2.2E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 SUPERFAMILY SSF46785 7 87 2.81E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 Gene3D G3DSA:3.40.190.10 174 272 5.6E-59 T 31-10-2018 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 SUPERFAMILY SSF53850 93 299 7.42E-41 T 31-10-2018 Y89_1688 2fd7d146637d1401e26500313dd3dfcf 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 4.0E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 SUPERFAMILY SSF46626 176 289 1.41E-14 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 Gene3D G3DSA:1.10.760.10 283 414 2.0E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 SUPERFAMILY SSF46626 300 404 3.4E-20 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 PIRSF PIRSF000018 1 415 4.7E-146 T 31-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 Pfam PF00034 Cytochrome c 31 129 1.3E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 300 383 1.2E-9 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 Gene3D G3DSA:1.10.760.10 3 136 5.3E-12 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 SUPERFAMILY SSF46626 17 152 8.84E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 PRINTS PR00605 Class IC cytochrome C signature 308 319 1.3E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_5228 5780f3a025e7d82d9aed89342a5b7937 415 PRINTS PR00605 Class IC cytochrome C signature 361 383 1.3E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 8.2E-63 T 31-10-2018 Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 SUPERFAMILY SSF51735 6 253 6.33E-77 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.6E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 196 7.7E-4 T 31-10-2018 Y89_2527 0fb65d791a9127f4b0c51a941b5cb508 265 Gene3D G3DSA:3.40.50.720 1 258 1.4E-77 T 31-10-2018 Y89_2340 e80bb37c84916d9c088f998afa6dce7d 816 Gene3D G3DSA:3.40.50.300 558 758 5.6E-24 T 31-10-2018 Y89_2340 e80bb37c84916d9c088f998afa6dce7d 816 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 182 388 6.0E-11 T 31-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 Y89_2340 e80bb37c84916d9c088f998afa6dce7d 816 SUPERFAMILY SSF52540 399 742 1.07E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2340 e80bb37c84916d9c088f998afa6dce7d 816 SMART SM00382 440 704 2.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2340 e80bb37c84916d9c088f998afa6dce7d 816 Gene3D G3DSA:3.40.50.300 420 541 5.7E-6 T 31-10-2018 Y89_2275 741084dcada4d35fd6c3e97c22d1246d 426 Gene3D G3DSA:2.40.160.10 10 426 1.3E-143 T 31-10-2018 IPR023614 Porin domain superfamily Y89_2275 741084dcada4d35fd6c3e97c22d1246d 426 Pfam PF03573 outer membrane porin, OprD family 28 424 1.4E-138 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 SUPERFAMILY SSF52540 194 436 4.55E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 477 497 1.3E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 477 1.3E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Gene3D G3DSA:1.10.8.60 366 440 1.1E-16 T 31-10-2018 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 219 232 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 SUPERFAMILY SSF55781 30 174 7.85E-8 T 31-10-2018 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 SMART SM00382 215 358 1.5E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Gene3D G3DSA:1.10.10.60 441 498 1.1E-13 T 31-10-2018 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Gene3D G3DSA:3.30.450.40 12 177 8.9E-7 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 SUPERFAMILY SSF46689 409 496 9.68E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 281 296 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Gene3D G3DSA:3.40.50.300 188 365 5.6E-67 T 31-10-2018 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Pfam PF02954 Bacterial regulatory protein, Fis family 454 493 7.6E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3671 50a57276acaf80819ed82fbb467dbdbc 503 Pfam PF00158 Sigma-54 interaction domain 195 361 1.6E-69 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 183 0.009 T 31-10-2018 Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 Pfam PF00106 short chain dehydrogenase 5 189 3.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.2E-17 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 Gene3D G3DSA:3.40.50.720 3 239 4.6E-69 T 31-10-2018 Y89_5577 a1d68909b29bb75b6f83cb8bd7e33b31 253 SUPERFAMILY SSF51735 4 231 3.14E-60 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2049 9fe1173620f5ba5a6d6471bd6409fe54 178 Pfam PF02620 Uncharacterized ACR, COG1399 62 173 1.0E-18 T 31-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Y89_1408 6a98d5b0f7cab16c1bef8114052e2dee 168 SUPERFAMILY SSF142433 4 161 3.4E-52 T 31-10-2018 IPR036653 CinA-like, C-terminal Y89_1408 6a98d5b0f7cab16c1bef8114052e2dee 168 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 161 2.4E-43 T 31-10-2018 IPR008136 CinA, C-terminal Y89_1408 6a98d5b0f7cab16c1bef8114052e2dee 168 Pfam PF02464 Competence-damaged protein 10 161 4.4E-55 T 31-10-2018 IPR008136 CinA, C-terminal Y89_1408 6a98d5b0f7cab16c1bef8114052e2dee 168 Gene3D G3DSA:3.90.950.20 1 162 5.9E-56 T 31-10-2018 IPR036653 CinA-like, C-terminal Y89_4922 53b6835ec36fc2082341824ff5d05432 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 2.9E-66 T 31-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 29.956 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 Gene3D G3DSA:3.90.1180.10 1 142 4.4E-65 T 31-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 Pfam PF00572 Ribosomal protein L13 15 138 8.2E-59 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 31-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 PIRSF PIRSF002181 1 142 2.8E-53 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Y89_4922 53b6835ec36fc2082341824ff5d05432 142 SUPERFAMILY SSF52161 1 139 2.49E-61 T 31-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SUPERFAMILY SSF47807 168 288 1.14E-28 T 31-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SMART SM00474 312 501 1.1E-36 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SUPERFAMILY SSF53098 311 501 3.8E-55 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:1.10.150.20 171 251 4.6E-91 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SMART SM00279 170 205 6.1E-12 T 31-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:3.40.50.1010 6 282 4.6E-91 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SMART SM00475 4 266 2.6E-114 T 31-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:1.20.1060.10 527 643 2.8E-38 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SMART SM00482 671 877 1.5E-118 T 31-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Pfam PF00476 DNA polymerase family A 539 911 1.4E-153 T 31-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 ProSitePatterns PS00447 DNA polymerase family A signature. 739 758 - T 31-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:3.30.420.10 309 526 4.5E-70 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:1.10.150.20 694 837 3.6E-114 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 TIGRFAM TIGR00593 pola: DNA polymerase I 6 913 4.8E-283 T 31-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SUPERFAMILY SSF56672 506 913 2.56E-160 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Gene3D G3DSA:3.30.70.370 649 909 3.6E-114 T 31-10-2018 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 776 787 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 860 873 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 663 678 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 764 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 830 846 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 798 809 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 640 662 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 685 708 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 715 728 1.0E-77 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 167 9.1E-51 T 31-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Pfam PF01612 3'-5' exonuclease 313 501 1.1E-38 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 168 269 6.3E-27 T 31-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 Y89_6233 86eb204c4a90012af2a6d91c4c11713f 913 SUPERFAMILY SSF88723 5 167 2.44E-52 T 31-10-2018 IPR029060 PIN-like domain superfamily Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 PIRSF PIRSF006293 2 224 2.0E-79 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 Pfam PF06508 Queuosine biosynthesis protein QueC 5 215 2.4E-80 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 208 1.0E-62 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 SUPERFAMILY SSF52402 4 223 1.79E-64 T 31-10-2018 Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 Gene3D G3DSA:3.40.50.620 2 220 1.3E-75 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_4379 8345c8f4c78a998d203a9c1bc1ec2db8 224 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 221 56.501 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Y89_3557 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF00924 Mechanosensitive ion channel 184 271 7.3E-9 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_3557 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF05552 Conserved TM helix 109 154 1.2E-8 T 31-10-2018 IPR008910 Conserved TM helix Y89_3557 8b4bb87e96a644f17480c6d8a4e72b62 274 Pfam PF05552 Conserved TM helix 14 60 7.4E-13 T 31-10-2018 IPR008910 Conserved TM helix Y89_3557 8b4bb87e96a644f17480c6d8a4e72b62 274 SUPERFAMILY SSF50182 219 272 5.56E-7 T 31-10-2018 IPR010920 LSM domain superfamily Y89_3557 8b4bb87e96a644f17480c6d8a4e72b62 274 Gene3D G3DSA:2.30.30.60 226 273 3.4E-6 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 Gene3D G3DSA:2.170.130.10 55 174 9.6E-22 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 Pfam PF00593 TonB dependent receptor 264 728 1.1E-53 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 SUPERFAMILY SSF56935 30 730 5.72E-122 T 31-10-2018 Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 167 5.0E-19 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 70 730 3.8E-72 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 713 730 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_0457 a3015a5debd5977ae14fe25e4e9681c1 730 Gene3D G3DSA:2.40.170.20 181 730 2.6E-105 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_3080 231138eef4083abd5ef87c74c57496eb 291 Gene3D G3DSA:3.40.50.720 1 158 6.5E-42 T 31-10-2018 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 155 6.6E-34 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 SUPERFAMILY SSF51735 1 159 5.17E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3080 231138eef4083abd5ef87c74c57496eb 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 3.5E-18 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 Gene3D G3DSA:1.10.1040.10 159 290 8.5E-33 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 PIRSF PIRSF000103 1 290 4.8E-75 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_3080 231138eef4083abd5ef87c74c57496eb 291 SUPERFAMILY SSF48179 165 287 1.08E-25 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_0260 ee34b60b9947bcd3b5182f5331df781f 154 SMART SM00347 30 133 1.7E-14 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0260 ee34b60b9947bcd3b5182f5331df781f 154 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 104 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y89_0260 ee34b60b9947bcd3b5182f5331df781f 154 SUPERFAMILY SSF46785 7 148 1.18E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0260 ee34b60b9947bcd3b5182f5331df781f 154 Gene3D G3DSA:1.10.10.10 3 148 8.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0260 ee34b60b9947bcd3b5182f5331df781f 154 Pfam PF01047 MarR family 40 96 1.1E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3964 85213f3ad6980890078c4a2efc6ade52 383 Pfam PF00534 Glycosyl transferases group 1 207 363 1.2E-27 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_3964 85213f3ad6980890078c4a2efc6ade52 383 SUPERFAMILY SSF53756 31 381 1.88E-58 T 31-10-2018 Y89_3964 85213f3ad6980890078c4a2efc6ade52 383 Gene3D G3DSA:3.40.50.2000 194 370 6.0E-41 T 31-10-2018 Y89_3964 85213f3ad6980890078c4a2efc6ade52 383 Gene3D G3DSA:3.40.50.2000 33 376 6.0E-41 T 31-10-2018 Y89_1354 bdc153084cf16752d6fc60d3289519d4 307 Gene3D G3DSA:3.40.50.300 1 234 2.4E-61 T 31-10-2018 Y89_1354 bdc153084cf16752d6fc60d3289519d4 307 SMART SM00382 26 216 3.0E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1354 bdc153084cf16752d6fc60d3289519d4 307 SUPERFAMILY SSF52540 2 231 1.96E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1354 bdc153084cf16752d6fc60d3289519d4 307 Pfam PF00005 ABC transporter 18 160 5.4E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3650 25015d3e79ae6ab8466bc108663558eb 181 Pfam PF03079 ARD/ARD' family 6 165 5.3E-35 T 31-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 Y89_3650 25015d3e79ae6ab8466bc108663558eb 181 Gene3D G3DSA:2.60.120.10 2 157 7.9E-56 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3650 25015d3e79ae6ab8466bc108663558eb 181 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 39.625 T 31-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 Y89_3650 25015d3e79ae6ab8466bc108663558eb 181 SUPERFAMILY SSF51182 1 179 2.32E-42 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Pfam PF00196 Bacterial regulatory proteins, luxR family 426 480 8.8E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:1.10.10.10 379 493 3.5E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0555 505810b31b7030193dc747b16aa22d2d 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 386 1.1E-8 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 262 1.6E-13 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 10 135 4.54E-7 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 155 265 2.0E-15 T 31-10-2018 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SMART SM00421 423 480 3.8E-24 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF46894 416 485 2.28E-20 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 136 251 2.79E-14 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13188 PAS domain 14 66 2.8E-7 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 426 440 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 456 468 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 440 456 2.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SUPERFAMILY SSF55785 255 377 1.15E-14 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 267 336 0.033 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 13 84 0.074 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 SMART SM00091 142 209 0.063 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 266 378 1.4E-13 T 31-10-2018 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Gene3D G3DSA:3.30.450.20 6 142 1.2E-9 T 31-10-2018 Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13426 PAS domain 160 252 2.2E-4 T 31-10-2018 IPR000014 PAS domain Y89_0555 505810b31b7030193dc747b16aa22d2d 496 Pfam PF13426 PAS domain 282 377 4.2E-8 T 31-10-2018 IPR000014 PAS domain Y89_4339 8519af379feb316ca6b15bf9d655283c 715 SUPERFAMILY SSF56059 494 710 4.6E-39 T 31-10-2018 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Pfam PF13380 CoA binding domain 25 148 8.4E-24 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Gene3D G3DSA:3.30.1490.20 510 587 5.2E-74 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 171 308 4.6E-40 T 31-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Gene3D G3DSA:3.30.470.20 494 703 5.2E-74 T 31-10-2018 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 SUPERFAMILY SSF51735 19 145 5.78E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Gene3D G3DSA:3.40.50.720 16 145 1.2E-41 T 31-10-2018 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Gene3D G3DSA:3.40.50.261 314 475 1.2E-22 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Pfam PF13549 ATP-grasp domain 493 706 2.4E-61 T 31-10-2018 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 SMART SM00881 21 116 6.5E-36 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 SUPERFAMILY SSF52210 315 469 6.28E-21 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 SUPERFAMILY SSF52210 148 309 1.57E-36 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_4339 8519af379feb316ca6b15bf9d655283c 715 Gene3D G3DSA:3.40.50.261 147 311 1.3E-40 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_5521 e305313438710aa897a3a0a101c7604a 332 PIRSF PIRSF006621 3 330 4.2E-107 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_5521 e305313438710aa897a3a0a101c7604a 332 Gene3D G3DSA:1.10.1200.80 256 328 9.6E-11 T 31-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Y89_5521 e305313438710aa897a3a0a101c7604a 332 Gene3D G3DSA:3.20.20.70 10 251 9.7E-80 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5521 e305313438710aa897a3a0a101c7604a 332 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 4 324 50.877 T 31-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 Y89_5521 e305313438710aa897a3a0a101c7604a 332 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 6 321 1.8E-126 T 31-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 Y89_5521 e305313438710aa897a3a0a101c7604a 332 SUPERFAMILY SSF51395 13 322 1.56E-94 T 31-10-2018 Y89_5521 e305313438710aa897a3a0a101c7604a 332 Pfam PF01207 Dihydrouridine synthase (Dus) 16 320 6.3E-110 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_5521 e305313438710aa897a3a0a101c7604a 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 97 115 - T 31-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:3.10.20.30 1 80 3.6E-12 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 215 6.4E-11 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 122 134 6.4E-11 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 221 230 6.4E-11 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 284 292 6.4E-11 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 138 145 6.4E-11 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF63380 92 186 8.9E-14 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF52343 192 317 5.11E-30 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:3.40.50.80 191 319 2.0E-25 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 Pfam PF00175 Oxidoreductase NAD-binding domain 197 297 4.6E-12 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 SUPERFAMILY SSF54292 3 79 5.12E-16 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 68 2.8E-7 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_5924 d0775a27f9567cd79d1d968540a0ccb2 322 Gene3D G3DSA:2.40.30.10 92 187 1.6E-14 T 31-10-2018 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 5.2E-19 T 31-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Gene3D G3DSA:3.30.310.50 369 445 8.0E-25 T 31-10-2018 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 9.0E-44 T 31-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 31-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 8.5E-193 T 31-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 SUPERFAMILY SSF53738 155 256 2.43E-31 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 443 46.697 T 31-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Gene3D G3DSA:3.40.120.10 2 153 9.9E-47 T 31-10-2018 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 362 6.1E-30 T 31-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 SUPERFAMILY SSF55957 357 444 1.44E-20 T 31-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 SUPERFAMILY SSF53738 2 180 9.81E-47 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 439 1.7E-11 T 31-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 SUPERFAMILY SSF53738 257 363 1.65E-29 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Gene3D G3DSA:3.40.120.10 256 338 4.3E-66 T 31-10-2018 Y89_5361 3de8094e96247f223bade0d48762bc45 445 Gene3D G3DSA:3.40.120.10 173 360 4.3E-66 T 31-10-2018 Y89_5361 3de8094e96247f223bade0d48762bc45 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 9.2E-15 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 9.2E-15 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_5361 3de8094e96247f223bade0d48762bc45 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 9.2E-15 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 Gene3D G3DSA:3.40.50.10380 13 266 2.6E-112 T 31-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 Gene3D G3DSA:3.40.50.720 267 564 1.4E-107 T 31-10-2018 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 145 174 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 181 203 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 85 109 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 265 281 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 296 312 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 240 258 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PRINTS PR00072 Malic enzyme signature 407 423 2.9E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 SMART SM01274 79 259 9.1E-105 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 PIRSF PIRSF000106 1 562 3.1E-220 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 Pfam PF03949 Malic enzyme, NAD binding domain 269 529 6.2E-104 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 ProSitePatterns PS00331 Malic enzymes signature. 265 281 - T 31-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 SUPERFAMILY SSF53223 5 268 7.19E-107 T 31-10-2018 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 2 564 70.344 T 31-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 SUPERFAMILY SSF51735 269 561 1.0E-92 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 Pfam PF00390 Malic enzyme, N-terminal domain 79 259 3.5E-77 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y89_1535 5faad901b3a7afe63e72166f9d548a5f 564 SMART SM00919 269 530 6.2E-129 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y89_3017 2f75aca56dd962479ac436d8e735cf6a 402 SUPERFAMILY SSF53756 1 395 3.45E-49 T 31-10-2018 Y89_3017 2f75aca56dd962479ac436d8e735cf6a 402 Gene3D G3DSA:3.40.50.2000 220 394 2.0E-15 T 31-10-2018 Y89_3017 2f75aca56dd962479ac436d8e735cf6a 402 Gene3D G3DSA:3.40.50.2000 1 219 1.8E-23 T 31-10-2018 Y89_3017 2f75aca56dd962479ac436d8e735cf6a 402 Pfam PF13579 Glycosyl transferase 4-like domain 16 206 8.9E-25 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_3017 2f75aca56dd962479ac436d8e735cf6a 402 Pfam PF13692 Glycosyl transferases group 1 222 359 2.7E-20 T 31-10-2018 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 SUPERFAMILY SSF51735 319 652 6.72E-71 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 SUPERFAMILY SSF50486 207 300 6.75E-21 T 31-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Gene3D G3DSA:3.40.50.12230 3 307 5.7E-101 T 31-10-2018 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 PIRSF PIRSF036506 3 661 0.0 T 31-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Pfam PF01370 NAD dependent epimerase/dehydratase family 320 567 5.9E-44 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Pfam PF00551 Formyl transferase 28 175 5.4E-26 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Gene3D G3DSA:3.40.50.720 316 659 2.9E-118 T 31-10-2018 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Pfam PF02911 Formyl transferase, C-terminal domain 204 279 1.3E-15 T 31-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 SUPERFAMILY SSF53328 5 204 1.83E-54 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_1473 8fec293dcebe42114b872900bb8d6fb5 662 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 3 661 61.342 T 31-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 283 4.7E-36 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 SUPERFAMILY SSF48179 164 291 1.81E-37 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 5.1E-50 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 SUPERFAMILY SSF51735 2 162 1.53E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3838 f28da4e80800fae327783af5caf35ebe 296 Gene3D G3DSA:3.40.50.720 1 162 9.2E-53 T 31-10-2018 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 Gene3D G3DSA:1.10.1040.10 163 294 9.3E-38 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 3 291 6.7E-118 T 31-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 Y89_3838 f28da4e80800fae327783af5caf35ebe 296 PIRSF PIRSF000103 1 291 3.0E-75 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 245 43.085 T 31-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 5.8E-19 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 Gene3D G3DSA:3.40.1280.10 80 245 7.9E-62 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 Pfam PF00588 SpoU rRNA Methylase family 98 238 3.3E-40 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 Gene3D G3DSA:3.30.1330.30 1 77 8.8E-23 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 SUPERFAMILY SSF55315 2 77 2.0E-18 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 SUPERFAMILY SSF75217 70 245 5.3E-49 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 SMART SM00967 6 81 6.3E-20 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Y89_5606 32f0d17dda4859c69ae6254654c6abab 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 244 4.6E-82 T 31-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 28 450 66.545 T 31-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 Gene3D G3DSA:2.40.50.140 20 97 3.3E-17 T 31-10-2018 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 272 442 4.4E-59 T 31-10-2018 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 SUPERFAMILY SSF53335 86 448 6.58E-77 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 276 447 4.6E-24 T 31-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 432 442 - T 31-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 381 411 - T 31-10-2018 IPR030390 RNA methyltransferase TrmA, active site Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 Gene3D G3DSA:3.40.1350.30 145 282 1.4E-113 T 31-10-2018 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 Gene3D G3DSA:3.40.50.150 98 444 1.4E-113 T 31-10-2018 Y89_4426 2c56f9c97c60e0ab64fe152ee7dcb1c3 450 SUPERFAMILY SSF50249 17 74 9.71E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 Gene3D G3DSA:1.10.357.10 1 214 5.2E-94 T 31-10-2018 Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.1E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 SUPERFAMILY SSF48498 82 209 2.0E-39 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 SUPERFAMILY SSF46689 4 74 3.28E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.4E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2013 be58247ac6d1c62117f1dbd10eb51dca 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.4E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4914 e0faa9e547b3acea6f5fb48ca75ece89 197 Gene3D G3DSA:3.40.50.10490 1 197 4.9E-76 T 31-10-2018 Y89_4914 e0faa9e547b3acea6f5fb48ca75ece89 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 192 37.873 T 31-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 Y89_4914 e0faa9e547b3acea6f5fb48ca75ece89 197 Pfam PF13580 SIS domain 14 146 1.0E-35 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_4914 e0faa9e547b3acea6f5fb48ca75ece89 197 SUPERFAMILY SSF53697 2 193 3.03E-58 T 31-10-2018 Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 Pfam PF03958 Bacterial type II/III secretion system short domain 275 400 7.4E-10 T 31-10-2018 IPR005644 NolW-like Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 Pfam PF00263 Bacterial type II and III secretion system protein 462 636 2.2E-44 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 PRINTS PR00811 Bacterial general secretion pathway protein D signature 601 619 8.6E-13 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 PRINTS PR00811 Bacterial general secretion pathway protein D signature 458 482 8.6E-13 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 PRINTS PR00811 Bacterial general secretion pathway protein D signature 624 638 8.6E-13 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 PRINTS PR00811 Bacterial general secretion pathway protein D signature 400 410 8.6E-13 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 Gene3D G3DSA:3.30.1370.120 274 401 2.8E-6 T 31-10-2018 IPR038591 NolW-like superfamily Y89_3967 06c02a3e1f1eb0abc0c7aefda0727837 669 Gene3D G3DSA:3.30.1370.120 11 178 2.8E-10 T 31-10-2018 IPR038591 NolW-like superfamily Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SUPERFAMILY SSF52129 392 530 6.45E-6 T 31-10-2018 IPR029030 Caspase-like domain superfamily Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 198 219 4.1E-5 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 267 288 8.0 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 175 196 3.1 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 152 173 6.6 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 129 150 6.6 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 38 59 4.0 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 61 82 13.0 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 107 128 1.5 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 244 265 21.0 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SMART SM00698 84 105 0.56 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Gene3D G3DSA:3.40.50.1460 356 545 1.8E-8 T 31-10-2018 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Gene3D G3DSA:2.20.110.10 136 229 1.6E-12 T 31-10-2018 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Gene3D G3DSA:2.20.110.10 33 135 2.9E-11 T 31-10-2018 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SUPERFAMILY SSF82185 35 122 2.09E-20 T 31-10-2018 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 SUPERFAMILY SSF82185 127 248 4.71E-25 T 31-10-2018 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF01650 Peptidase C13 family 342 547 1.2E-43 T 31-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 86 108 0.12 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 109 124 0.88 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 269 291 0.038 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 40 60 0.039 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 177 199 2.8E-4 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 224 245 0.32 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 131 153 0.0073 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 200 222 6.7E-6 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 154 175 0.077 T 31-10-2018 IPR003409 MORN motif Y89_1008 fb12f888e0ad57b10b97f92af8cf4762 579 Pfam PF02493 MORN repeat 63 85 2.1E-4 T 31-10-2018 IPR003409 MORN motif Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 SUPERFAMILY SSF53649 40 474 2.45E-134 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 Pfam PF00245 Alkaline phosphatase 68 433 9.6E-118 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 Pfam PF00245 Alkaline phosphatase 435 473 5.7E-7 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 Gene3D G3DSA:3.40.720.10 29 475 9.7E-153 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 ProSitePatterns PS00123 Alkaline phosphatase active site. 125 133 - T 31-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 125 140 3.8E-47 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 225 235 3.8E-47 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 324 353 3.8E-47 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 68 88 3.8E-47 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 PRINTS PR00113 Alkaline phosphatase signature 162 182 3.8E-47 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_1716 b080cf82cb8a0a8b2648e58ce670262b 476 SMART SM00098 69 475 2.1E-186 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 PIRSF PIRSF000382 1 765 0.0 T 31-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 Gene3D G3DSA:3.20.20.210 393 760 0.0 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 317 4.7E-118 T 31-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 SUPERFAMILY SSF51726 400 761 1.83E-120 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 Gene3D G3DSA:3.20.20.210 6 528 0.0 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 SUPERFAMILY SSF51726 3 398 5.1E-116 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 760 0.0 T 31-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 435 757 6.7E-154 T 31-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y89_3394 a75f272a150c489e2a7e39b286cae65b 766 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 762 37.554 T 31-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 SUPERFAMILY SSF54637 9 159 3.16E-38 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 Pfam PF01575 MaoC like domain 165 272 3.2E-26 T 31-10-2018 IPR002539 MaoC-like dehydratase domain Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 Gene3D G3DSA:3.10.129.10 5 158 1.1E-39 T 31-10-2018 Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 Gene3D G3DSA:3.10.129.10 162 282 4.1E-38 T 31-10-2018 Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 Pfam PF13452 N-terminal half of MaoC dehydratase 51 130 6.0E-8 T 31-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Y89_4338 6f8808ec33ea5e171163a9bf6d0212c0 288 SUPERFAMILY SSF54637 163 277 7.48E-28 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_3625 105e2871f62bcf1874e9dedccba56e66 390 Pfam PF04888 Secretion system effector C (SseC) like family 111 385 8.9E-54 T 31-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 Gene3D G3DSA:3.40.50.720 7 293 1.5E-71 T 31-10-2018 Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 249 6.1E-42 T 31-10-2018 Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.6E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.6E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.6E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 4.6E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.6E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 SUPERFAMILY SSF51735 7 253 2.15E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 205 4.1E-7 T 31-10-2018 Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.6E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 7.6E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4332 ccfff6382e6618da8dbc5e27a6e585c7 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 7.6E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF03129 Anticodon binding domain 540 628 3.7E-19 T 31-10-2018 IPR004154 Anticodon-binding Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.40.50.800 531 639 1.3E-28 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 8.3E-224 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.30.930.10 222 530 2.9E-129 T 31-10-2018 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF81271 3 61 7.52E-15 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 34.194 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF02824 TGS domain 4 61 4.7E-10 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.30.980.10 69 221 1.9E-60 T 31-10-2018 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF55681 242 525 2.11E-101 T 31-10-2018 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.30.54.20 130 186 1.9E-60 T 31-10-2018 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 528 7.7E-46 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Gene3D G3DSA:3.10.20.30 3 63 2.5E-22 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF55186 63 240 2.62E-64 T 31-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 218 3.0E-14 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 3.6E-52 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 3.6E-52 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 3.6E-52 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 3.6E-52 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 3.6E-52 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 SMART SM00863 169 218 2.1E-20 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Y89_2300 d921b147675a8d38f8c8e72b56bd06a5 640 SUPERFAMILY SSF52954 528 632 3.93E-30 T 31-10-2018 Y89_0139 6b0df11d2e5125cdde10745b50896009 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 112 1.0E-50 T 31-10-2018 IPR004624 PhnA protein Y89_0139 6b0df11d2e5125cdde10745b50896009 113 SUPERFAMILY SSF82057 41 113 6.41E-29 T 31-10-2018 Y89_0139 6b0df11d2e5125cdde10745b50896009 113 Pfam PF08274 PhnA Zinc-Ribbon 3 32 2.6E-17 T 31-10-2018 IPR013987 PhnA protein, N-terminal Y89_0139 6b0df11d2e5125cdde10745b50896009 113 Gene3D G3DSA:2.30.30.40 43 113 3.1E-35 T 31-10-2018 Y89_0139 6b0df11d2e5125cdde10745b50896009 113 Gene3D G3DSA:2.20.25.10 1 42 2.0E-23 T 31-10-2018 Y89_0139 6b0df11d2e5125cdde10745b50896009 113 SUPERFAMILY SSF57783 3 37 2.13E-15 T 31-10-2018 Y89_0139 6b0df11d2e5125cdde10745b50896009 113 Pfam PF03831 PhnA domain 46 113 4.7E-33 T 31-10-2018 IPR013988 PhnA protein, C-terminal Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.1E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.1E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.1E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.1E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 SUPERFAMILY SSF51735 1 277 1.29E-70 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 Pfam PF00106 short chain dehydrogenase 7 201 2.6E-51 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 193 9.7E-5 T 31-10-2018 Y89_3801 22352c6eff9b6e43abc3aefc4e76f9ea 295 Gene3D G3DSA:3.40.50.720 1 268 3.6E-74 T 31-10-2018 Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 PIRSF PIRSF005624 2 203 1.6E-46 T 31-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 6 201 5.4E-106 T 31-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 4 202 48.063 T 31-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 SMART SM00382 4 183 0.0019 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 SUPERFAMILY SSF52540 3 197 1.79E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 178 2.8E-35 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y89_5562 8dbd58077ccb664652e3c36e743b7454 204 Gene3D G3DSA:3.40.50.300 6 202 1.1E-49 T 31-10-2018 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Gene3D G3DSA:1.10.540.10 1 121 2.8E-40 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Gene3D G3DSA:2.40.110.10 122 235 1.5E-44 T 31-10-2018 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 SUPERFAMILY SSF56645 5 242 6.68E-92 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 1.0E-45 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 SUPERFAMILY SSF47203 230 378 7.09E-52 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 119 9.3E-37 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Gene3D G3DSA:1.20.140.10 236 378 2.4E-48 T 31-10-2018 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.7E-27 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4924 ac69f5f6c5cebf8c20b611f1041c6181 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:3.30.565.10 1989 2175 7.4E-53 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM01231 1851 1990 1.3E-11 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 433 556 1.94E-14 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:2.40.50.180 2199 2273 1.1E-34 T 31-10-2018 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00260 2168 2318 2.0E-34 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 1670 1778 4.19E-20 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 864 989 4.6E-27 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 7 130 1.83E-23 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 1358 1487 1.1E-25 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 1514 1649 9.3E-25 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF52172 2350 2469 3.98E-36 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2039 2175 5.8E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00073 1362 1459 6.6E-7 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00073 1522 1619 0.0095 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00073 1669 1766 6.4E-4 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00073 864 961 3.8E-6 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00073 1041 1144 0.49 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 1019 1133 2.6E-16 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:3.40.50.12740 2351 2472 1.1E-38 T 31-10-2018 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 1522 1644 1.83E-26 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF50341 2175 2314 1.7E-21 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF00072 Response regulator receiver domain 2353 2465 1.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01584 CheW-like domain 2181 2320 9.0E-23 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 1041 1164 4.84E-19 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00448 2351 2464 2.9E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 1362 1484 1.83E-27 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:2.30.30.40 2176 2313 1.1E-34 T 31-10-2018 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 2136 2154 1.5E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 2080 2094 1.5E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 2160 2173 1.5E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 866 953 1.5E-13 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 1524 1623 4.4E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 1043 1129 2.4E-11 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 10 98 2.8E-8 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 1671 1764 3.7E-15 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Pfam PF01627 Hpt domain 1364 1457 6.3E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 863 997 5.6E-26 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF47226 1184 1304 1.91E-15 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 1669 1798 1.1E-20 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 14 127 2.8E-6 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SUPERFAMILY SSF55874 1992 2173 7.99E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 Gene3D G3DSA:1.20.120.160 1183 1285 1.9E-7 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0436 a0f9c526d0573567b859e70f49050a32 2472 SMART SM00387 2035 2176 1.3E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0627 f260995215b0674dddcb5793cb968c3a 145 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 127 5.6E-26 T 31-10-2018 IPR009678 Bacteriophage tail completion protein R Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 Pfam PF02311 AraC-like ligand binding domain 12 109 1.3E-9 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 244 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 SMART SM00342 166 248 3.8E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 SUPERFAMILY SSF51182 6 181 8.45E-22 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 Gene3D G3DSA:1.10.10.60 151 252 8.6E-25 T 31-10-2018 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 217 232 5.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 248 5.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 Pfam PF12833 Helix-turn-helix domain 173 248 3.1E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 Gene3D G3DSA:2.60.120.10 4 93 1.1E-9 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4118 71c5b8c2a66ca768a2851afb79b1197c 260 SUPERFAMILY SSF46689 203 248 1.7E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0365 5140a24f02f68b5ab0df450e5c38799d 459 Pfam PF11981 Domain of unknown function (DUF3482) 165 450 2.1E-109 T 31-10-2018 IPR021871 Protein of unknown function DUF3482 Y89_0365 5140a24f02f68b5ab0df450e5c38799d 459 Gene3D G3DSA:3.40.50.300 2 182 8.8E-25 T 31-10-2018 Y89_0365 5140a24f02f68b5ab0df450e5c38799d 459 SUPERFAMILY SSF52540 4 168 7.46E-18 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0365 5140a24f02f68b5ab0df450e5c38799d 459 Pfam PF01926 50S ribosome-binding GTPase 8 152 1.0E-15 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF55874 263 424 2.75E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 Gene3D G3DSA:3.30.565.10 277 426 1.2E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 321 424 1.7E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00388 208 273 2.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF158472 158 206 3.4E-6 T 31-10-2018 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SUPERFAMILY SSF47384 191 274 4.51E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00304 155 207 6.9E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 273 2.0E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 Gene3D G3DSA:1.10.287.130 159 274 5.9E-24 T 31-10-2018 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 Pfam PF00672 HAMP domain 161 203 3.2E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3531 210966b9eec25f59cb14f8f75f7b9373 428 SMART SM00387 318 428 2.5E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 SUPERFAMILY SSF55781 29 168 5.23E-26 T 31-10-2018 Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 SMART SM00267 170 341 5.2E-50 T 31-10-2018 IPR000160 GGDEF domain Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 Pfam PF00990 Diguanylate cyclase, GGDEF domain 182 337 2.1E-42 T 31-10-2018 IPR000160 GGDEF domain Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 Pfam PF01590 GAF domain 31 138 5.2E-11 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 178 339 1.5E-45 T 31-10-2018 IPR000160 GGDEF domain Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 SUPERFAMILY SSF55073 186 339 7.45E-45 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 Gene3D G3DSA:3.30.450.40 14 177 1.4E-17 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 SMART SM00065 26 168 1.2E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_2260 c4adb1f7770b652e44f3f186ff73ffac 341 Gene3D G3DSA:3.30.70.270 181 341 2.5E-54 T 31-10-2018 Y89_4723 2303fabe8350816858d6ee4e53fc5b76 131 SUPERFAMILY SSF54593 1 127 4.43E-35 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4723 2303fabe8350816858d6ee4e53fc5b76 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 1.9E-20 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4723 2303fabe8350816858d6ee4e53fc5b76 131 Gene3D G3DSA:3.10.180.10 1 131 7.4E-45 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4723 2303fabe8350816858d6ee4e53fc5b76 131 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 128 9.9E-56 T 31-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y89_5345 5daab83886895ecd19799ba58766423c 554 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 501 518 - T 31-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 269 282 - T 31-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 Pfam PF00342 Phosphoglucose isomerase 55 545 5.7E-194 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 SUPERFAMILY SSF53697 9 551 2.63E-208 T 31-10-2018 Y89_5345 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:1.10.1390.10 511 552 2.6E-16 T 31-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:3.40.50.10490 16 510 1.5E-219 T 31-10-2018 Y89_5345 5daab83886895ecd19799ba58766423c 554 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 49 528 40.844 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 153 172 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 501 514 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 469 487 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 487 501 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 342 363 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 265 283 2.6E-51 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5345 5daab83886895ecd19799ba58766423c 554 Gene3D G3DSA:3.40.50.10490 101 295 1.5E-219 T 31-10-2018 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 SUPERFAMILY SSF54506 1 260 9.89E-86 T 31-10-2018 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 Gene3D G3DSA:3.10.310.10 5 252 2.0E-98 T 31-10-2018 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 259 8.0E-42 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 Gene3D G3DSA:3.10.310.10 117 248 2.0E-98 T 31-10-2018 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 PIRSF PIRSF016184 1 260 1.5E-61 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_1448 3a20e96a36123d016c5c147ffe405e84 261 Pfam PF02567 Phenazine biosynthesis-like protein 8 256 3.3E-62 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 4.9E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 4.9E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 4.9E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 Gene3D G3DSA:3.40.50.12740 3 207 3.4E-52 T 31-10-2018 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 SMART SM00448 2 114 4.0E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 SUPERFAMILY SSF52172 2 170 2.85E-30 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1974 a22b6fe9a13172875db428cd5748501a 207 Pfam PF00072 Response regulator receiver domain 4 115 4.9E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 SMART SM00421 144 201 1.3E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 4.4E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1974 a22b6fe9a13172875db428cd5748501a 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_6107 3ee3011b07dd6d5bbd84285472ca9890 323 SUPERFAMILY SSF53850 37 320 9.86E-72 T 31-10-2018 Y89_6107 3ee3011b07dd6d5bbd84285472ca9890 323 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 3 309 7.5E-97 T 31-10-2018 IPR011862 Phosphate binding protein GO:0042301 Y89_6107 3ee3011b07dd6d5bbd84285472ca9890 323 Gene3D G3DSA:3.40.190.10 39 311 4.9E-119 T 31-10-2018 Y89_6107 3ee3011b07dd6d5bbd84285472ca9890 323 Pfam PF12849 PBP superfamily domain 36 295 1.3E-33 T 31-10-2018 IPR024370 PBP domain Y89_6107 3ee3011b07dd6d5bbd84285472ca9890 323 Gene3D G3DSA:3.40.190.10 124 267 4.9E-119 T 31-10-2018 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 Gene3D G3DSA:3.10.20.10 42 128 1.2E-9 T 31-10-2018 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 17 278 27.637 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 SUPERFAMILY SSF53927 36 273 2.92E-67 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 38 261 1.8E-48 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 PIRSF PIRSF015626 9 279 6.3E-73 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 Pfam PF02634 FdhD/NarQ family 41 273 3.7E-66 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Y89_5866 f4740d75cbe8f16116fd333082dff531 279 Gene3D G3DSA:3.40.140.10 131 278 1.3E-38 T 31-10-2018 Y89_0549 5666a5a2055b728413c74514b47d1296 292 Gene3D G3DSA:3.40.190.290 92 290 1.4E-38 T 31-10-2018 Y89_0549 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0549 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0549 5666a5a2055b728413c74514b47d1296 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0549 5666a5a2055b728413c74514b47d1296 292 Gene3D G3DSA:1.10.10.10 1 84 1.5E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0549 5666a5a2055b728413c74514b47d1296 292 SUPERFAMILY SSF53850 91 291 9.93E-34 T 31-10-2018 Y89_0549 5666a5a2055b728413c74514b47d1296 292 Pfam PF03466 LysR substrate binding domain 88 288 2.1E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0549 5666a5a2055b728413c74514b47d1296 292 SUPERFAMILY SSF46785 1 82 9.62E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0549 5666a5a2055b728413c74514b47d1296 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 11 427 5.6E-201 T 31-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 SUPERFAMILY SSF52540 85 354 1.81E-97 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 17 82 2.2E-10 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 Gene3D G3DSA:3.40.50.12240 8 429 1.9E-152 T 31-10-2018 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 339 348 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 10 427 7.3E-172 T 31-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 SMART SM00382 151 332 3.3E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3636 37e9747c6fb11f12f2ac4c3f51ae9748 429 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 139 348 3.1E-78 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF14849 YidC periplasmic domain 82 190 2.0E-24 T 31-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF14849 YidC periplasmic domain 208 380 4.5E-53 T 31-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 571 24.56 T 31-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Gene3D G3DSA:2.70.98.90 78 191 4.7E-34 T 31-10-2018 IPR038221 YidC, periplasmic domain superfamily Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Gene3D G3DSA:2.70.98.90 192 370 4.0E-58 T 31-10-2018 IPR038221 YidC, periplasmic domain superfamily Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 Pfam PF02096 60Kd inner membrane protein 391 569 2.2E-61 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 255 273 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 2 23 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 452 475 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 288 303 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 535 558 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 361 381 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR00701 60kDa inner membrane protein signature 499 521 6.3E-76 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 190 6.9E-42 T 31-10-2018 IPR028053 Membrane insertase YidC, N-terminal Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 208 389 1.0E-62 T 31-10-2018 IPR028053 Membrane insertase YidC, N-terminal Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 390 569 2.6E-72 T 31-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 505 520 7.2E-27 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 376 392 7.2E-27 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_6308 4e890f6119afe3153bd98e4910e86bd1 578 PRINTS PR01900 YidC translocation/secretion protein signature 524 548 7.2E-27 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Y89_5160 be5aef915d8e11748ad253c619a4b2e4 195 Pfam PF14341 PilX N-terminal 9 59 5.5E-10 T 31-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Pfam PF10415 Fumarase C C-terminus 406 458 1.5E-26 T 31-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Gene3D G3DSA:1.10.275.10 3 136 3.7E-60 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_4506 7b3d344d3487058f798a87450317e1a8 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 458 3.4E-221 T 31-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Gene3D G3DSA:1.20.200.10 137 405 1.3E-111 T 31-10-2018 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 1.5E-6 T 31-10-2018 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 1.5E-6 T 31-10-2018 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00145 Argininosuccinate lyase family signature 131 153 1.5E-6 T 31-10-2018 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 1.9E-32 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 1.9E-32 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 1.9E-32 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4506 7b3d344d3487058f798a87450317e1a8 464 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 1.9E-32 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4506 7b3d344d3487058f798a87450317e1a8 464 SUPERFAMILY SSF48557 3 459 2.67E-155 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 2 460 89.637 T 31-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Gene3D G3DSA:1.10.40.30 406 462 3.9E-30 T 31-10-2018 Y89_4506 7b3d344d3487058f798a87450317e1a8 464 Pfam PF00206 Lyase 10 340 5.0E-106 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 484 638 1.1E-42 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 SMART SM00304 399 449 78.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 SMART SM00304 344 396 5.4E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 Pfam PF00672 HAMP domain 350 391 2.8E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 SUPERFAMILY SSF58104 364 673 1.44E-74 T 31-10-2018 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 SMART SM00283 411 672 3.7E-72 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5006 8ef101f1c5d50049083cc6b80ccd0968 673 Gene3D G3DSA:1.10.287.950 345 673 3.8E-72 T 31-10-2018 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 SMART SM00448 1 111 8.1E-40 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 Gene3D G3DSA:3.40.50.2300 1 121 7.5E-35 T 31-10-2018 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 Gene3D G3DSA:1.10.10.10 123 224 1.3E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 2.9E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 SUPERFAMILY SSF46894 124 221 2.04E-28 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 Pfam PF00072 Response regulator receiver domain 3 112 2.1E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 SMART SM00862 145 220 6.0E-23 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 SUPERFAMILY SSF52172 1 121 6.12E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2669 6c40741fde839c074d3fcc96b1b3871a 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 1.2E-101 T 31-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SUPERFAMILY SSF48008 74 210 1.31E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.5E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SMART SM00345 9 67 2.5E-12 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SUPERFAMILY SSF46785 4 71 5.82E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Gene3D G3DSA:1.10.10.10 2 68 5.8E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Gene3D G3DSA:1.20.120.530 71 202 6.9E-32 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 Pfam PF07729 FCD domain 77 198 1.2E-26 T 31-10-2018 IPR011711 GntR, C-terminal Y89_6265 9098f33bb7a1698ecd0f1b4487a6d4f6 226 SMART SM00895 77 201 5.6E-23 T 31-10-2018 IPR011711 GntR, C-terminal Y89_1042 c5b818880f98b35f956258f84429ea24 446 SMART SM00729 147 367 3.4E-58 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_1042 c5b818880f98b35f956258f84429ea24 446 Gene3D G3DSA:3.40.50.12160 3 138 3.0E-32 T 31-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Y89_1042 c5b818880f98b35f956258f84429ea24 446 Pfam PF04055 Radical SAM superfamily 151 325 1.4E-28 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_1042 c5b818880f98b35f956258f84429ea24 446 Gene3D G3DSA:3.80.30.20 145 378 3.8E-83 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y89_1042 c5b818880f98b35f956258f84429ea24 446 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 438 7.4E-150 T 31-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Y89_1042 c5b818880f98b35f956258f84429ea24 446 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 441 1.5E-185 T 31-10-2018 Y89_1042 c5b818880f98b35f956258f84429ea24 446 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 8.7E-28 T 31-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Y89_1042 c5b818880f98b35f956258f84429ea24 446 SUPERFAMILY SSF102114 125 375 2.62E-61 T 31-10-2018 Y89_1042 c5b818880f98b35f956258f84429ea24 446 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 31-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y89_1042 c5b818880f98b35f956258f84429ea24 446 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 442 73.698 T 31-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Y89_1042 c5b818880f98b35f956258f84429ea24 446 Pfam PF01938 TRAM domain 378 441 1.0E-19 T 31-10-2018 IPR002792 TRAM domain Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 Pfam PF03466 LysR substrate binding domain 89 291 4.6E-35 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 SUPERFAMILY SSF53850 89 292 5.43E-38 T 31-10-2018 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 SUPERFAMILY SSF46785 1 111 3.82E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 Gene3D G3DSA:3.40.190.10 90 286 2.5E-55 T 31-10-2018 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 Gene3D G3DSA:3.40.190.10 162 264 2.5E-55 T 31-10-2018 Y89_3219 100dc4a5ddb67ec1f1e6a096c6a2671e 300 Gene3D G3DSA:1.10.10.10 1 88 1.8E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3160 93ef09dcf1817e9b2ba89800d6121604 142 Gene3D G3DSA:3.10.450.50 1 142 1.9E-51 T 31-10-2018 Y89_3160 93ef09dcf1817e9b2ba89800d6121604 142 Pfam PF12680 SnoaL-like domain 16 111 4.7E-9 T 31-10-2018 IPR037401 SnoaL-like domain Y89_3160 93ef09dcf1817e9b2ba89800d6121604 142 SUPERFAMILY SSF54427 10 118 6.86E-20 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 171 258 2.5E-26 T 31-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 SUPERFAMILY SSF56281 3 258 5.24E-73 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 Pfam PF00753 Metallo-beta-lactamase superfamily 14 170 1.7E-15 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 258 44.824 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 SMART SM00849 12 170 3.6E-38 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 258 1.1E-105 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 Gene3D G3DSA:3.60.15.10 1 258 2.6E-88 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3516 5bd7398071c4f9c1d2729e5e648a437f 258 PIRSF PIRSF005457 1 258 4.7E-104 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Y89_5964 1a209ae39dc3410429ff54689c551667 111 Gene3D G3DSA:3.30.920.10 1 109 7.4E-35 T 31-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_5964 1a209ae39dc3410429ff54689c551667 111 SMART SM01219 4 109 1.1E-46 T 31-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_5964 1a209ae39dc3410429ff54689c551667 111 SUPERFAMILY SSF55387 2 106 3.49E-31 T 31-10-2018 Y89_5964 1a209ae39dc3410429ff54689c551667 111 Pfam PF01491 Frataxin-like domain 4 105 1.9E-22 T 31-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_5964 1a209ae39dc3410429ff54689c551667 111 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 4 108 24.929 T 31-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_5964 1a209ae39dc3410429ff54689c551667 111 ProSitePatterns PS01344 Frataxin family signature. 51 65 - T 31-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_5964 1a209ae39dc3410429ff54689c551667 111 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 5 108 3.2E-34 T 31-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1269 6e0b10264c4bd214597de5684e742503 363 Gene3D G3DSA:3.20.20.140 45 334 9.7E-105 T 31-10-2018 Y89_1269 6e0b10264c4bd214597de5684e742503 363 Gene3D G3DSA:2.30.40.10 7 361 9.7E-105 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1269 6e0b10264c4bd214597de5684e742503 363 SUPERFAMILY SSF51556 45 332 2.13E-82 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_1269 6e0b10264c4bd214597de5684e742503 363 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 40 360 1.4E-71 T 31-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Y89_1269 6e0b10264c4bd214597de5684e742503 363 SUPERFAMILY SSF51338 3 362 1.03E-6 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1269 6e0b10264c4bd214597de5684e742503 363 PIRSF PIRSF038994 3 363 2.5E-96 T 31-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Y89_1269 6e0b10264c4bd214597de5684e742503 363 Pfam PF01979 Amidohydrolase family 41 361 6.2E-12 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 182 197 - T 31-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 SUPERFAMILY SSF142984 258 341 8.89E-19 T 31-10-2018 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 349 431 2.6E-24 T 31-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 SMART SM00928 346 391 2.8E-21 T 31-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 SUPERFAMILY SSF142019 26 253 4.84E-86 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 SUPERFAMILY SSF140490 343 436 1.23E-29 T 31-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 Gene3D G3DSA:3.40.50.11540 67 246 2.5E-78 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 Gene3D G3DSA:1.20.1440.230 344 444 9.1E-26 T 31-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 Gene3D G3DSA:3.10.20.600 251 343 1.7E-22 T 31-10-2018 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 234 1.3E-51 T 31-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 359 370 - T 31-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2447 23587dd3b3c1664be6fb9c625a979a24 448 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 433 1.4E-196 T 31-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 Gene3D G3DSA:2.40.100.10 89 218 1.6E-53 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 SMART SM00796 2 202 3.2E-93 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 SUPERFAMILY SSF50891 91 218 7.96E-42 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 1.7E-47 T 31-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 3 202 4.2E-67 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 Gene3D G3DSA:3.30.1360.40 2 78 6.7E-15 T 31-10-2018 Y89_4996 f887aa515c2d7640e02026117cb5a4e0 225 SUPERFAMILY SSF160467 3 96 1.96E-16 T 31-10-2018 Y89_5813 502654a1531a733cfcde290c6b20c601 245 Gene3D G3DSA:3.20.20.70 1 241 3.1E-85 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5813 502654a1531a733cfcde290c6b20c601 245 SUPERFAMILY SSF51366 1 239 2.28E-75 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_5813 502654a1531a733cfcde290c6b20c601 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 239 35.569 T 31-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Y89_5813 502654a1531a733cfcde290c6b20c601 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 3.3E-77 T 31-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Y89_5813 502654a1531a733cfcde290c6b20c601 245 Pfam PF00977 Histidine biosynthesis protein 3 231 1.3E-77 T 31-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 200 225 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 39 65 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 231 251 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 10 26 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 277 303 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 119 142 3.6E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF14841 FliG middle domain 120 193 5.0E-24 T 31-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 PIRSF PIRSF003161 5 338 4.3E-118 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF01706 FliG C-terminal domain 223 329 5.2E-41 T 31-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 SUPERFAMILY SSF48029 119 330 2.49E-69 T 31-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 94 196 8.1E-25 T 31-10-2018 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 5 90 1.5E-20 T 31-10-2018 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Pfam PF14842 FliG N-terminal domain 9 108 1.1E-33 T 31-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 Gene3D G3DSA:1.10.220.30 200 338 2.1E-45 T 31-10-2018 Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 SUPERFAMILY SSF48029 12 122 8.24E-24 T 31-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Y89_4252 088b736bb2473edf83917cc158a2e0b6 338 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 336 2.3E-102 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Y89_3575 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Pfam PF12710 haloacid dehalogenase-like hydrolase 64 160 8.6E-10 T 31-10-2018 Y89_3575 9acc0f9567e4d0e4da55c0833a7a9dfb 205 SUPERFAMILY SSF56784 2 191 1.15E-44 T 31-10-2018 IPR036412 HAD-like superfamily Y89_3575 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Gene3D G3DSA:3.90.1470.10 13 128 4.2E-85 T 31-10-2018 Y89_3575 9acc0f9567e4d0e4da55c0833a7a9dfb 205 Gene3D G3DSA:3.40.50.1000 3 191 4.2E-85 T 31-10-2018 IPR023214 HAD superfamily Y89_3575 9acc0f9567e4d0e4da55c0833a7a9dfb 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 2 203 4.2E-125 T 31-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 Y89_5316 4777799a57374964beb0a078048bc598 265 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 160 176 - T 31-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y89_5316 4777799a57374964beb0a078048bc598 265 Gene3D G3DSA:2.60.120.10 135 263 9.5E-29 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5316 4777799a57374964beb0a078048bc598 265 SUPERFAMILY SSF51206 151 259 3.54E-28 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_5316 4777799a57374964beb0a078048bc598 265 PRINTS PR00103 cAMP-dependent protein kinase signature 194 203 1.8E-6 T 31-10-2018 Y89_5316 4777799a57374964beb0a078048bc598 265 PRINTS PR00103 cAMP-dependent protein kinase signature 169 183 1.8E-6 T 31-10-2018 Y89_5316 4777799a57374964beb0a078048bc598 265 PRINTS PR00103 cAMP-dependent protein kinase signature 154 168 1.8E-6 T 31-10-2018 Y89_5316 4777799a57374964beb0a078048bc598 265 PRINTS PR00103 cAMP-dependent protein kinase signature 206 217 1.8E-6 T 31-10-2018 Y89_5316 4777799a57374964beb0a078048bc598 265 SMART SM00100 128 246 8.6E-19 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_5316 4777799a57374964beb0a078048bc598 265 Pfam PF00027 Cyclic nucleotide-binding domain 152 234 1.1E-21 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 SUPERFAMILY SSF52210 240 384 8.9E-54 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Pfam PF00549 CoA-ligase 262 382 1.4E-24 T 31-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.519 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.30.470.20 1 234 2.0E-96 T 31-10-2018 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Pfam PF08442 ATP-grasp domain 2 203 3.9E-83 T 31-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 PIRSF PIRSF001554 1 388 2.2E-157 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 SUPERFAMILY SSF56059 1 237 1.9E-82 T 31-10-2018 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.30.1490.20 21 104 2.0E-96 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.4E-177 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 Gene3D G3DSA:3.40.50.261 240 388 2.6E-57 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_3747 14a7396624b7f524b09554cb0ddc0fb9 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 31-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 SUPERFAMILY SSF52540 34 274 8.69E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 4 389 5.7E-180 T 31-10-2018 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 Pfam PF00005 ABC transporter 46 195 9.0E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 SMART SM00382 52 253 3.5E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6114 5dec5f8cbdc633cc57dbed4e4e8337f0 392 Gene3D G3DSA:3.40.50.300 30 292 1.4E-69 T 31-10-2018 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 PIRSF PIRSF000194 1 168 1.1E-58 T 31-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 16 38 - T 31-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 Gene3D G3DSA:3.40.430.10 4 168 9.8E-55 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 Pfam PF00186 Dihydrofolate reductase 5 167 9.7E-55 T 31-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 SUPERFAMILY SSF53597 4 168 2.11E-55 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 100 114 6.8E-16 T 31-10-2018 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 30 38 6.8E-16 T 31-10-2018 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 16 26 6.8E-16 T 31-10-2018 Y89_0371 21b0c7617b286ab416ea7f6d54fecf47 168 PRINTS PR00070 Dihydrofolate reductase signature 43 54 6.8E-16 T 31-10-2018 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 Gene3D G3DSA:3.90.180.10 14 344 6.4E-132 T 31-10-2018 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 SUPERFAMILY SSF51735 150 314 3.26E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 145 2.2E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 Pfam PF00107 Zinc-binding dehydrogenase 187 310 5.5E-23 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 Gene3D G3DSA:3.40.50.720 161 316 6.4E-132 T 31-10-2018 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 SMART SM00829 14 344 1.7E-4 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_2979 ebc853d2c4686518fbb9c9016a71d8b0 353 SUPERFAMILY SSF50129 13 173 2.2E-50 T 31-10-2018 IPR011032 GroES-like superfamily Y89_0031 1e507efbc130cba71613f16c11e8074b 274 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 87 5.1E-24 T 31-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y89_0031 1e507efbc130cba71613f16c11e8074b 274 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 271 5.8E-76 T 31-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y89_0031 1e507efbc130cba71613f16c11e8074b 274 SUPERFAMILY SSF51735 101 270 1.21E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0031 1e507efbc130cba71613f16c11e8074b 274 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 116 165 4.0E-7 T 31-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Y89_0031 1e507efbc130cba71613f16c11e8074b 274 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 270 31.372 T 31-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y89_0031 1e507efbc130cba71613f16c11e8074b 274 SUPERFAMILY SSF53223 1 100 1.09E-30 T 31-10-2018 Y89_0031 1e507efbc130cba71613f16c11e8074b 274 Gene3D G3DSA:3.40.50.720 115 237 2.5E-85 T 31-10-2018 Y89_0031 1e507efbc130cba71613f16c11e8074b 274 Gene3D G3DSA:3.40.50.10860 6 258 2.5E-85 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.30 858 1099 1.9E-134 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF56801 8 561 6.41E-117 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.10 1730 2103 5.5E-153 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 862 1104 2.78E-52 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3088 3240 1.2E-47 T 31-10-2018 IPR010060 Non-ribosomal peptide synthase Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF56801 1094 1653 5.89E-159 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.30 3432 3695 6.2E-131 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3867 3878 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:1.10.1200.10 1631 1713 2.6E-27 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.30 2952 3218 1.1E-87 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF56801 2154 2722 3.4E-154 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2733 2748 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00501 AMP-binding enzyme 3719 4128 1.4E-84 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00501 AMP-binding enzyme 2192 2595 8.8E-91 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00501 AMP-binding enzyme 16 456 2.8E-87 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00501 AMP-binding enzyme 1134 1531 2.6E-102 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 3431 3682 1.45E-51 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4275 4290 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SMART SM00823 Phosphopantetheine attachment site 587 656 8.1E-4 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SMART SM00823 Phosphopantetheine attachment site 4251 4320 9.4E-4 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SMART SM00823 Phosphopantetheine attachment site 2709 2776 0.0081 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SMART SM00823 Phosphopantetheine attachment site 1640 1709 0.0045 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.40.50.12780 9 448 6.9E-154 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.30 1912 2159 5.5E-153 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.300.30 450 575 5.7E-37 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.10 2778 2951 1.4E-53 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF13193 AMP-binding enzyme C-terminal domain 4136 4224 2.5E-8 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF13193 AMP-binding enzyme C-terminal domain 2603 2683 2.4E-13 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF13193 AMP-binding enzyme C-terminal domain 1539 1616 5.0E-7 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00668 Condensation domain 2787 3217 1.1E-81 T 31-10-2018 IPR001242 Condensation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00668 Condensation domain 1727 2174 9.2E-105 T 31-10-2018 IPR001242 Condensation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00668 Condensation domain 675 1115 1.4E-98 T 31-10-2018 IPR001242 Condensation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00668 Condensation domain 3248 3698 1.0E-90 T 31-10-2018 IPR001242 Condensation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00012 Phosphopantetheine attachment site. 611 626 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 678 854 7.78E-51 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 1731 1908 1.85E-52 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 2783 2981 1.45E-41 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00550 Phosphopantetheine attachment site 4253 4316 8.6E-14 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00550 Phosphopantetheine attachment site 589 651 2.1E-11 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00550 Phosphopantetheine attachment site 1642 1704 4.7E-13 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Pfam PF00550 Phosphopantetheine attachment site 2710 2771 2.5E-13 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.10 676 1044 1.9E-134 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2336 2347 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF56801 3684 4264 2.88E-143 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1275 1286 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF47336 4243 4317 1.26E-20 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.559.10 3253 3630 6.2E-131 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF47336 581 687 8.51E-15 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 1914 2157 1.08E-61 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:1.10.1200.10 2699 2777 6.4E-26 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:1.10.1200.10 576 657 5.2E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:1.10.1200.10 4240 4319 1.1E-28 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF47336 2701 2771 4.32E-19 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.40.50.12780 3710 4120 4.6E-120 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.40.50.12780 2183 2587 2.6E-130 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.40.50.12780 1124 1523 1.1E-144 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 2967 3216 7.45E-47 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF52777 3253 3430 4.11E-47 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.300.30 4121 4239 2.3E-33 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.300.30 2588 2698 2.0E-35 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 Gene3D G3DSA:3.30.300.30 1524 1630 2.8E-30 T 31-10-2018 Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3740 4152 8.2E-123 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2213 2619 1.2E-126 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1156 1555 1.9E-135 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2775 c16c8bef3bc96fb2a7217c631fdb2afc 4342 SUPERFAMILY SSF47336 1633 1705 1.18E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1235 21.715 T 31-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Gene3D G3DSA:3.40.50.300 473 884 6.9E-148 T 31-10-2018 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1008 1211 1.4E-6 T 31-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 SUPERFAMILY SSF52980 939 1236 1.18E-71 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Gene3D G3DSA:3.40.50.300 10 462 4.3E-147 T 31-10-2018 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Pfam PF13361 UvrD-like helicase C-terminal domain 719 856 1.8E-12 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 SUPERFAMILY SSF52540 5 860 1.66E-109 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Gene3D G3DSA:1.10.486.10 618 760 6.9E-148 T 31-10-2018 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Pfam PF00580 UvrD/REP helicase N-terminal domain 17 461 1.2E-57 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 10 1234 0.0 T 31-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Gene3D G3DSA:3.90.320.10 928 1241 8.8E-89 T 31-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Y89_4768 0a33a7ea6b5e1cd73c8806e7bc4bc197 1242 Gene3D G3DSA:1.10.3170.10 160 367 4.3E-147 T 31-10-2018 Y89_2733 058532d992decb69e6d57210e8c726c7 172 Pfam PF08281 Sigma-70, region 4 113 165 4.1E-14 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2733 058532d992decb69e6d57210e8c726c7 172 Gene3D G3DSA:1.10.1740.10 5 79 9.8E-11 T 31-10-2018 Y89_2733 058532d992decb69e6d57210e8c726c7 172 SUPERFAMILY SSF88946 11 102 3.77E-16 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2733 058532d992decb69e6d57210e8c726c7 172 Gene3D G3DSA:1.10.10.10 105 165 3.7E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2733 058532d992decb69e6d57210e8c726c7 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 1.0E-20 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2733 058532d992decb69e6d57210e8c726c7 172 SUPERFAMILY SSF88659 91 165 3.36E-13 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_2733 058532d992decb69e6d57210e8c726c7 172 Pfam PF04542 Sigma-70 region 2 17 81 7.9E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_6077 a9a48ce641746a8bdcf84bed6c2c4408 126 SUPERFAMILY SSF55298 1 125 3.93E-46 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_6077 a9a48ce641746a8bdcf84bed6c2c4408 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 2.3E-53 T 31-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 Y89_6077 a9a48ce641746a8bdcf84bed6c2c4408 126 Pfam PF01042 Endoribonuclease L-PSP 9 124 5.1E-43 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_6077 a9a48ce641746a8bdcf84bed6c2c4408 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 31-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 Y89_6077 a9a48ce641746a8bdcf84bed6c2c4408 126 Gene3D G3DSA:3.30.1330.40 3 126 1.6E-53 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 583 3.2E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Gene3D G3DSA:1.10.287.130 341 428 1.7E-18 T 31-10-2018 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 PIRSF PIRSF036431 1 592 3.0E-208 T 31-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Gene3D G3DSA:3.30.450.20 57 178 3.9E-69 T 31-10-2018 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 SUPERFAMILY SSF47384 353 429 1.92E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 SUPERFAMILY SSF103190 55 190 2.35E-19 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Pfam PF00512 His Kinase A (phospho-acceptor) domain 365 429 1.4E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Gene3D G3DSA:3.30.565.10 434 584 1.6E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 SMART SM00387 475 586 1.4E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 529 1.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 564 1.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 543 1.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Gene3D G3DSA:3.30.450.20 45 263 3.9E-69 T 31-10-2018 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 Pfam PF02743 Cache domain 35 263 2.5E-15 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 SMART SM00388 365 433 4.9E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5851 aa644de4daf460158566a1d15e0bb7fe 599 SUPERFAMILY SSF55874 424 582 1.24E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 51 72 4.0E-5 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 1.2E-25 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 SUPERFAMILY SSF47336 1 77 3.14E-20 T 31-10-2018 IPR036736 ACP-like superfamily Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 Gene3D G3DSA:1.10.1200.10 1 76 1.2E-23 T 31-10-2018 IPR036736 ACP-like superfamily Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 Pfam PF00550 Phosphopantetheine attachment site 7 73 2.6E-14 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 19.899 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_3456 dc11005e3c7ba8602d282502b4e9bf62 79 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0084 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 Gene3D G3DSA:3.40.630.30 118 263 1.6E-21 T 31-10-2018 Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 Pfam PF00583 Acetyltransferase (GNAT) family 169 237 4.2E-8 T 31-10-2018 IPR000182 GNAT domain Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 Gene3D G3DSA:3.10.180.10 1 117 8.4E-39 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 SUPERFAMILY SSF54593 4 115 4.97E-24 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 SUPERFAMILY SSF55729 125 257 7.89E-19 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1892 1cd1a4b59d301a14eaa09abbcdaa073e 267 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 112 3.7E-4 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 853 0.0 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Pfam PF01411 tRNA synthetases class II (A) 5 552 2.0E-228 T 31-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 4.1E-31 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 4.1E-31 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 4.1E-31 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 4.1E-31 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 4.1E-31 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 208.918 T 31-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Gene3D G3DSA:3.30.980.10 561 696 2.9E-52 T 31-10-2018 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Gene3D G3DSA:3.10.310.40 763 871 7.4E-30 T 31-10-2018 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 SUPERFAMILY SSF55186 550 706 7.59E-52 T 31-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 SUPERFAMILY SSF55681 2 253 7.46E-107 T 31-10-2018 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 SUPERFAMILY SSF101353 254 452 6.02E-63 T 31-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Pfam PF02272 DHHA1 domain 732 870 1.9E-27 T 31-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 695 4.3E-19 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Gene3D G3DSA:3.30.54.20 622 676 2.9E-52 T 31-10-2018 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 SMART SM00863 651 695 8.2E-23 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Gene3D G3DSA:3.30.930.10 1 250 3.5E-122 T 31-10-2018 Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 SUPERFAMILY SSF50447 452 550 1.69E-19 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_4456 d9db425b631c44d6c154710c49b6f4d8 874 Gene3D G3DSA:2.40.30.130 473 550 2.0E-11 T 31-10-2018 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 Pfam PF04542 Sigma-70 region 2 13 78 6.9E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 Gene3D G3DSA:1.10.1740.10 2 74 2.6E-11 T 31-10-2018 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 Gene3D G3DSA:1.10.10.10 87 173 6.3E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 Pfam PF08281 Sigma-70, region 4 115 165 5.2E-16 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 SUPERFAMILY SSF88946 10 88 3.61E-15 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 169 1.1E-27 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_4050 e5bf7aef86fedaddb764f166386a64ab 175 SUPERFAMILY SSF88659 96 170 7.63E-16 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 Pfam PF03023 MviN-like protein 14 462 9.0E-155 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 1 453 19.429 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 119 143 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 38 54 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 343 362 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 245 271 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 19 38 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 395 412 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PRINTS PR01806 Virulence factor MviN signature 143 164 9.2E-87 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 PIRSF PIRSF002869 1 498 3.3E-171 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_5169 15b6cf46a1a8be75543f8c6775f86621 498 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 1 488 3.3E-160 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_2959 8db93d7af5a2567ec1898c84775a6dc1 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 240 5.2E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2959 8db93d7af5a2567ec1898c84775a6dc1 265 Gene3D G3DSA:1.10.3720.10 56 250 1.0E-23 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2959 8db93d7af5a2567ec1898c84775a6dc1 265 SUPERFAMILY SSF161098 61 241 1.31E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0927 fba76dc181f77932afad5b4756554192 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_0927 fba76dc181f77932afad5b4756554192 352 SUPERFAMILY SSF50129 1 179 1.67E-53 T 31-10-2018 IPR011032 GroES-like superfamily Y89_0927 fba76dc181f77932afad5b4756554192 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 141 1.1E-33 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_0927 fba76dc181f77932afad5b4756554192 352 Gene3D G3DSA:3.90.180.10 10 326 1.2E-106 T 31-10-2018 Y89_0927 fba76dc181f77932afad5b4756554192 352 Gene3D G3DSA:3.40.50.720 159 291 1.2E-106 T 31-10-2018 Y89_0927 fba76dc181f77932afad5b4756554192 352 SUPERFAMILY SSF51735 147 310 6.34E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0927 fba76dc181f77932afad5b4756554192 352 Pfam PF00107 Zinc-binding dehydrogenase 182 305 2.4E-24 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_0927 fba76dc181f77932afad5b4756554192 352 SMART SM00829 7 343 9.7E-7 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_2980 52e1e58e10007e15d79ae86fb6384f55 125 Pfam PF03992 Antibiotic biosynthesis monooxygenase 48 95 1.1E-5 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_2980 52e1e58e10007e15d79ae86fb6384f55 125 Gene3D G3DSA:3.30.70.100 18 121 4.8E-15 T 31-10-2018 Y89_2980 52e1e58e10007e15d79ae86fb6384f55 125 SUPERFAMILY SSF54909 15 121 1.41E-14 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3244 2ebf6bdb678167559610e4b40af22041 298 Pfam PF10124 Mu-like prophage major head subunit gpT 8 296 1.7E-119 T 31-10-2018 IPR018774 Bacteriophage Mu, GpT Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 29 285 1.6E-113 T 31-10-2018 IPR030836 Putative ABC transporter periplasmic binding protein PhnD-like Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 271 2.0E-68 T 31-10-2018 Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 Gene3D G3DSA:3.40.190.10 112 219 1.5E-62 T 31-10-2018 Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 SUPERFAMILY SSF53850 51 233 2.61E-41 T 31-10-2018 Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 Gene3D G3DSA:3.40.190.10 32 245 1.5E-62 T 31-10-2018 Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 4 244 2.2E-77 T 31-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Y89_1696 8875deb5096a7c98641f6bf5c96ac514 285 SMART SM00062 28 257 0.0056 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 SUPERFAMILY SSF47336 2 77 3.14E-24 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 8.9E-37 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.7E-17 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0084 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.547 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 9.0E-13 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Y89_2054 bf67608ca7d265aa4d65a517423f7750 78 Gene3D G3DSA:1.10.1200.10 1 78 3.3E-30 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1671 d059711350a6241ac774e5238fea74b1 96 Gene3D G3DSA:3.40.30.10 1 87 3.1E-42 T 31-10-2018 Y89_1671 d059711350a6241ac774e5238fea74b1 96 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 8 79 1.2E-22 T 31-10-2018 IPR011893 Selenoprotein, Rdx-type Y89_1671 d059711350a6241ac774e5238fea74b1 96 Pfam PF10262 Rdx family 8 80 2.0E-32 T 31-10-2018 IPR011893 Selenoprotein, Rdx-type Y89_1671 d059711350a6241ac774e5238fea74b1 96 SUPERFAMILY SSF52833 6 89 3.35E-28 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 8.5E-203 T 31-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 296 1.6E-7 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.5E-5 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Pfam PF12804 MobA-like NTP transferase domain 6 121 2.6E-24 T 31-10-2018 IPR025877 MobA-like NTP transferase Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Gene3D G3DSA:3.90.550.10 1 224 1.1E-64 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 SUPERFAMILY SSF51161 252 439 2.52E-49 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 SUPERFAMILY SSF53448 1 249 1.07E-63 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 43.28 T 31-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Y89_6292 3f39534078091ac7a275a6c21bfac2a9 454 Gene3D G3DSA:2.160.10.10 225 453 3.2E-67 T 31-10-2018 Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 186 338 5.3E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 Pfam PF00990 Diguanylate cyclase, GGDEF domain 190 338 1.3E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 Gene3D G3DSA:3.30.450.20 17 134 1.3E-29 T 31-10-2018 Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 Pfam PF08447 PAS fold 44 132 4.8E-24 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 146 9.4E-8 T 31-10-2018 IPR000014 PAS domain Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 SMART SM00267 178 345 1.1E-57 T 31-10-2018 IPR000160 GGDEF domain Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 SMART SM00091 21 89 5.8E-5 T 31-10-2018 IPR000014 PAS domain Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 Gene3D G3DSA:3.30.70.270 174 345 7.6E-53 T 31-10-2018 Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 SUPERFAMILY SSF55073 194 339 1.1E-43 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0359 28aee70a9a6904d8e086565bb6e40fbb 345 SUPERFAMILY SSF55785 27 140 9.07E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.30.450.20 334 486 5.7E-26 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 952 970 3.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 935 945 3.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 917 931 3.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 PRINTS PR00344 Bacterial sensor protein C-terminal signature 976 989 3.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00086 702 744 0.012 T 31-10-2018 IPR001610 PAC motif Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00086 418 460 0.0089 T 31-10-2018 IPR001610 PAC motif Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00086 572 614 5.3E-6 T 31-10-2018 IPR001610 PAC motif Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF03924 CHASE domain 80 263 1.3E-44 T 31-10-2018 IPR006189 CHASE domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF08447 PAS fold 649 738 6.2E-17 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF55785 344 450 1.31E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.30.450.20 492 616 4.8E-26 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF55874 818 988 1.7E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:1.20.120.160 1300 1406 4.0E-14 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM01079 77 267 1.2E-60 T 31-10-2018 IPR006189 CHASE domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF00989 PAS fold 346 457 7.4E-15 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.30.565.10 828 996 3.6E-48 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF47384 748 830 2.55E-21 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.40.50.2300 1148 1276 2.6E-35 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.40.50.2300 1006 1142 1.5E-25 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.30.450.350 81 280 3.9E-20 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF52172 1007 1135 1.71E-27 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 500 620 1.2E-15 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 343 466 1.7E-24 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:3.30.450.20 622 697 2.8E-16 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:2.10.70.100 699 743 1.6E-11 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF00512 His Kinase A (phospho-acceptor) domain 764 829 1.5E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 876 991 3.6E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00388 764 829 2.1E-23 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00448 1158 1273 2.6E-33 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00448 1009 1130 1.5E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF01627 Hpt domain 1315 1397 2.9E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF52172 1155 1279 9.82E-35 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00387 876 992 1.6E-38 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF47226 1256 1378 7.59E-17 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00073 1306 1408 4.1E-5 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF13426 PAS domain 502 613 6.0E-12 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF00072 Response regulator receiver domain 1012 1129 1.2E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Pfam PF00072 Response regulator receiver domain 1161 1270 8.8E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF55785 504 621 6.63E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00091 626 696 0.0018 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00091 491 559 6.2E-5 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SMART SM00091 345 411 3.0E-8 T 31-10-2018 IPR000014 PAS domain Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 Gene3D G3DSA:1.10.287.130 744 827 2.5E-27 T 31-10-2018 Y89_0910 af0aeec0e27ba877fec29ca233a18354 1417 SUPERFAMILY SSF55785 611 742 5.41E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 Pfam PF00501 AMP-binding enzyme 27 443 1.1E-100 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 Gene3D G3DSA:3.40.50.12780 7 438 1.2E-113 T 31-10-2018 Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 Gene3D G3DSA:3.30.300.310 439 544 2.3E-33 T 31-10-2018 Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 SUPERFAMILY SSF56801 16 540 2.35E-144 T 31-10-2018 Y89_3053 b7c953f1c48f09d9a0fc68023b5d8678 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 528 6.6E-21 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 SMART SM00382 26 209 5.6E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 Gene3D G3DSA:3.40.50.300 1 236 6.3E-77 T 31-10-2018 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 Pfam PF00005 ABC transporter 17 159 7.7E-37 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 32 352 2.7E-117 T 31-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 Gene3D G3DSA:2.40.50.100 279 329 1.2E-5 T 31-10-2018 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 Gene3D G3DSA:2.40.50.140 237 278 1.2E-5 T 31-10-2018 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 SUPERFAMILY SSF52540 1 239 9.0E-88 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 Pfam PF08402 TOBE domain 276 356 7.9E-16 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1419 ed02688a052ba19640ddf8adcd9cf1df 359 SUPERFAMILY SSF50331 235 356 1.81E-17 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.9E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 2.6E-61 T 31-10-2018 Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.0E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.0E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.0E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3869 971a481ed2f872678ede7b3d178d6775 245 Gene3D G3DSA:3.40.50.720 5 245 1.3E-71 T 31-10-2018 Y89_3869 971a481ed2f872678ede7b3d178d6775 245 SUPERFAMILY SSF51735 7 244 1.86E-73 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 SUPERFAMILY SSF53850 88 299 5.43E-41 T 31-10-2018 Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 Pfam PF03466 LysR substrate binding domain 88 294 3.2E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 Gene3D G3DSA:1.10.10.10 2 88 2.8E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 Gene3D G3DSA:3.40.190.10 92 290 8.5E-57 T 31-10-2018 Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 SUPERFAMILY SSF46785 2 112 3.03E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.3E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1461 a9b488912c5e0285943d5c218da9a4d5 306 Gene3D G3DSA:3.40.190.10 164 265 8.5E-57 T 31-10-2018 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 Gene3D G3DSA:3.10.290.10 329 409 1.9E-8 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 Pfam PF00579 tRNA synthetases class I (W and Y) 36 325 1.4E-66 T 31-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 409 1.3E-96 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 8 410 40.33 T 31-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 Gene3D G3DSA:3.40.50.620 2 226 4.6E-80 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_0884 cd59e629be1cd3361b004e33e997458f 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 1.3E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 1.3E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 1.3E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 1.3E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 Gene3D G3DSA:1.10.240.10 227 328 2.1E-28 T 31-10-2018 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 SUPERFAMILY SSF55174 306 409 9.42E-10 T 31-10-2018 Y89_0884 cd59e629be1cd3361b004e33e997458f 412 SUPERFAMILY SSF52374 9 322 1.93E-87 T 31-10-2018 Y89_1161 91a66114ff4ef28656d5688d0fa67f31 375 Pfam PF01266 FAD dependent oxidoreductase 5 347 1.8E-45 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1161 91a66114ff4ef28656d5688d0fa67f31 375 Gene3D G3DSA:3.50.50.60 5 348 2.1E-136 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1161 91a66114ff4ef28656d5688d0fa67f31 375 SUPERFAMILY SSF51905 4 357 1.0E-39 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1161 91a66114ff4ef28656d5688d0fa67f31 375 Gene3D G3DSA:3.30.9.10 84 308 2.1E-136 T 31-10-2018 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 Gene3D G3DSA:1.20.1600.10 56 464 2.1E-113 T 31-10-2018 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 SUPERFAMILY SSF56954 5 466 1.83E-94 T 31-10-2018 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 Pfam PF02321 Outer membrane efflux protein 285 464 3.0E-21 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 Pfam PF02321 Outer membrane efflux protein 68 253 2.2E-26 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 Gene3D G3DSA:2.20.200.10 103 355 2.1E-113 T 31-10-2018 Y89_0814 b15fd8921d9b28ed7ecdf8acb4549204 487 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 20 466 4.1E-94 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_3799 162ae975a5fd140780180fa418d6647c 282 Gene3D G3DSA:1.10.10.60 13 57 8.0E-14 T 31-10-2018 Y89_3799 162ae975a5fd140780180fa418d6647c 282 SUPERFAMILY SSF46689 17 79 1.89E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3799 162ae975a5fd140780180fa418d6647c 282 Gene3D G3DSA:1.10.357.10 102 238 1.8E-12 T 31-10-2018 Y89_3799 162ae975a5fd140780180fa418d6647c 282 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 63 8.6E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1599 12a4158a2c5b9d69b9f331afeb296d8f 328 Gene3D G3DSA:3.55.50.30 255 327 2.0E-7 T 31-10-2018 Y89_1599 12a4158a2c5b9d69b9f331afeb296d8f 328 Gene3D G3DSA:2.60.120.1440 101 242 7.9E-19 T 31-10-2018 Y89_1599 12a4158a2c5b9d69b9f331afeb296d8f 328 PIRSF PIRSF018266 2 325 1.9E-79 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_1599 12a4158a2c5b9d69b9f331afeb296d8f 328 Pfam PF04773 FecR protein 115 210 9.8E-16 T 31-10-2018 IPR006860 FecR protein Y89_1599 12a4158a2c5b9d69b9f331afeb296d8f 328 Pfam PF16220 Domain of unknown function (DUF4880) 12 53 6.7E-10 T 31-10-2018 IPR032623 FecR, N-terminal Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Pfam PF02913 FAD linked oxidases, C-terminal domain 219 458 2.8E-55 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 SUPERFAMILY SSF55103 189 459 6.54E-46 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Pfam PF01565 FAD binding domain 42 175 3.1E-33 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Gene3D G3DSA:1.10.45.10 419 459 1.8E-15 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Gene3D G3DSA:3.30.465.40 8 219 1.2E-58 T 31-10-2018 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Gene3D G3DSA:3.30.70.2190 220 334 1.2E-27 T 31-10-2018 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 SUPERFAMILY SSF56176 5 213 1.72E-55 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_3933 0c7709fa47785e53ed3ce45e1d398afb 460 Gene3D G3DSA:3.30.70.2740 338 418 1.2E-13 T 31-10-2018 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 229 8.7E-17 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 25 141 1.6E-40 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 SUPERFAMILY SSF49354 20 141 7.33E-40 T 31-10-2018 IPR008962 PapD-like superfamily Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 PRINTS PR00969 Pili chaperone signature 123 138 1.7E-26 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 PRINTS PR00969 Pili chaperone signature 72 93 1.7E-26 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 PRINTS PR00969 Pili chaperone signature 26 35 1.7E-26 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 PRINTS PR00969 Pili chaperone signature 100 117 1.7E-26 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 PRINTS PR00969 Pili chaperone signature 162 177 1.7E-26 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 Gene3D G3DSA:2.60.40.10 145 237 3.3E-24 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 SUPERFAMILY SSF49584 135 232 1.83E-16 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_4364 12c5e0065d7efdabb533386d9cdbf520 237 Gene3D G3DSA:2.60.40.10 25 142 1.8E-38 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 Gene3D G3DSA:3.40.190.10 83 184 2.6E-6 T 31-10-2018 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.3E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.9E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 SUPERFAMILY SSF46785 4 89 2.91E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 Gene3D G3DSA:3.40.190.10 185 264 2.8E-6 T 31-10-2018 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 Pfam PF03466 LysR substrate binding domain 90 292 6.3E-29 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 SUPERFAMILY SSF53850 89 294 4.71E-23 T 31-10-2018 Y89_6167 03887e040c2f4a6bc29996a7295e6d18 302 Gene3D G3DSA:1.10.10.10 3 82 7.1E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SMART SM00862 145 220 5.4E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Gene3D G3DSA:3.40.50.2300 1 121 1.1E-37 T 31-10-2018 Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Pfam PF00072 Response regulator receiver domain 4 112 2.6E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 8.3E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SMART SM00448 1 112 2.2E-40 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 SUPERFAMILY SSF52172 1 177 7.18E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4174 d49ae68fc4cf8fa4f5c33ea27aa552aa 225 Gene3D G3DSA:1.10.10.10 122 224 4.6E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4833 4d4854571d6a00e9b009fa274398efd5 261 Gene3D G3DSA:3.60.15.10 3 242 5.5E-32 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4833 4d4854571d6a00e9b009fa274398efd5 261 SUPERFAMILY SSF56281 12 243 8.65E-32 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4833 4d4854571d6a00e9b009fa274398efd5 261 SMART SM00849 29 225 3.7E-22 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4833 4d4854571d6a00e9b009fa274398efd5 261 Pfam PF00753 Metallo-beta-lactamase superfamily 27 225 2.2E-23 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:3.40.190.10 167 264 2.9E-58 T 31-10-2018 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 SUPERFAMILY SSF46785 2 86 7.48E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:3.40.190.10 88 289 2.9E-58 T 31-10-2018 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 SUPERFAMILY SSF53850 88 291 7.45E-39 T 31-10-2018 Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 Pfam PF03466 LysR substrate binding domain 93 292 2.2E-24 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 Gene3D G3DSA:1.10.10.10 1 87 2.2E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5572 4b393f058881d56cd6e9fde115c9819f 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 6.4E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1699 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 SUPERFAMILY SSF53649 237 532 8.34E-20 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_1699 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Pfam PF00884 Sulfatase 240 529 2.6E-54 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_1699 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Gene3D G3DSA:3.40.720.10 222 548 1.1E-89 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_1699 b3b6c6041fb21e1f4e3c2ef2d9d3271f 551 Pfam PF08019 Domain of unknown function (DUF1705) 59 209 7.6E-49 T 31-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 PIRSF PIRSF000774 1 497 1.3E-157 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 494 1.7E-159 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF04552 Sigma-54, DNA binding domain 337 495 5.1E-72 T 31-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 Gene3D G3DSA:1.10.10.60 437 494 5.5E-24 T 31-10-2018 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 412 423 1.4E-32 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 396 408 1.4E-32 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 470 488 1.4E-32 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 PRINTS PR00045 Sigma-54 factor signature 206 223 1.4E-32 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF04963 Sigma-54 factor, core binding domain 130 323 4.3E-63 T 31-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 475 482 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 8.3E-17 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 384 403 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Y89_4952 5bf60887ecf851fdf77990d038adc04f 497 Gene3D G3DSA:1.10.10.1330 136 261 1.3E-25 T 31-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 67 85 4.7E-10 T 31-10-2018 IPR006129 Adhesin B GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 86 105 4.7E-10 T 31-10-2018 IPR006129 Adhesin B GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 144 163 4.7E-10 T 31-10-2018 IPR006129 Adhesin B GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 202 219 4.7E-10 T 31-10-2018 IPR006129 Adhesin B GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00691 Adhesin B signature 42 63 4.7E-10 T 31-10-2018 IPR006129 Adhesin B GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 SUPERFAMILY SSF53807 41 313 9.81E-68 T 31-10-2018 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 Gene3D G3DSA:3.40.50.1980 41 205 3.6E-36 T 31-10-2018 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 255 273 7.5E-9 T 31-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 202 223 7.5E-9 T 31-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 73 86 7.5E-9 T 31-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 PRINTS PR00690 Adhesin family signature 86 103 7.5E-9 T 31-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 Gene3D G3DSA:3.40.50.1980 208 313 1.5E-21 T 31-10-2018 Y89_2793 39a82e352e0afacef9d91f703d929e9d 317 Pfam PF01297 Zinc-uptake complex component A periplasmic 48 310 1.3E-53 T 31-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 Gene3D G3DSA:3.40.190.290 85 284 3.9E-56 T 31-10-2018 Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 Pfam PF03466 LysR substrate binding domain 82 284 3.5E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 Gene3D G3DSA:1.10.10.10 1 84 2.1E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 SUPERFAMILY SSF53850 83 287 3.8E-43 T 31-10-2018 Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 SUPERFAMILY SSF46785 1 81 1.18E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2327 3ef8a8f0649ecc9df89dcf5748fb3a32 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 1.3E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4168 faf3590d54ad666322115d7d658a548e 209 Gene3D G3DSA:3.40.30.10 2 203 2.1E-74 T 31-10-2018 Y89_4168 faf3590d54ad666322115d7d658a548e 209 SUPERFAMILY SSF47616 81 199 1.12E-32 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_4168 faf3590d54ad666322115d7d658a548e 209 Gene3D G3DSA:1.20.1050.10 85 193 2.1E-74 T 31-10-2018 Y89_4168 faf3590d54ad666322115d7d658a548e 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 78 8.2E-17 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_4168 faf3590d54ad666322115d7d658a548e 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 194 1.4E-11 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_4168 faf3590d54ad666322115d7d658a548e 209 SUPERFAMILY SSF52833 3 84 4.84E-24 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Gene3D G3DSA:3.90.79.10 2 126 1.4E-40 T 31-10-2018 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 PRINTS PR00502 NUDIX hydrolase family signature 47 62 7.0E-7 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 PRINTS PR00502 NUDIX hydrolase family signature 33 47 7.0E-7 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Pfam PF14815 NUDIX domain 8 124 1.6E-21 T 31-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Pfam PF02581 Thiamine monophosphate synthase 132 309 9.4E-34 T 31-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 SUPERFAMILY SSF55811 2 126 5.82E-39 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 125 2.4E-32 T 31-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 Gene3D G3DSA:3.20.20.70 127 313 1.7E-40 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4889 a9e03a86a0bcbbb5e8f819dedf24f6bf 315 SUPERFAMILY SSF51391 114 311 6.93E-44 T 31-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Gene3D G3DSA:3.30.450.170 27 150 9.7E-43 T 31-10-2018 IPR038428 2-component histidine kinase, sensor domain superfamily Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SUPERFAMILY SSF55874 283 444 4.58E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SMART SM00387 338 446 2.5E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Gene3D G3DSA:1.10.287.130 182 294 2.2E-21 T 31-10-2018 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Pfam PF16750 Sensor domain of 2-component histidine kinase 40 149 3.1E-35 T 31-10-2018 IPR031930 2-component histidine kinase, sensor domain Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SUPERFAMILY SSF47384 218 292 2.94E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SMART SM00388 234 293 7.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Pfam PF00672 HAMP domain 178 229 8.2E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 292 1.2E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SMART SM00304 178 233 4.1E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 433 3.7E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 Gene3D G3DSA:3.30.565.10 322 446 1.5E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 SUPERFAMILY SSF158472 178 230 4.58E-7 T 31-10-2018 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 1.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 1.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4429 03786f8b66342a73df0ef6b10d4eb0f2 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 1.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Gene3D G3DSA:3.30.70.3400 220 438 1.5E-44 T 31-10-2018 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF02355 Protein export membrane protein 443 606 2.7E-17 T 31-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Gene3D G3DSA:1.20.1640.10 439 614 1.8E-10 T 31-10-2018 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF07549 SecD/SecF GG Motif 117 141 4.1E-6 T 31-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 619 46.695 T 31-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 124 606 4.8E-134 T 31-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 343 599 6.5E-70 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Gene3D G3DSA:3.30.1360.200 281 437 1.5E-44 T 31-10-2018 Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 Pfam PF13721 SecD export protein N-terminal TM region 2 104 8.5E-34 T 31-10-2018 IPR027398 SecD export protein N-terminal TM domain Y89_1205 8e3d102bbd07675990fba89d144b61fa 620 SUPERFAMILY SSF82866 325 611 2.09E-42 T 31-10-2018 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PIRSF PIRSF000724 1 387 3.9E-132 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 5.0E-80 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 31-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.93 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 Gene3D G3DSA:3.40.50.1260 10 379 1.7E-150 T 31-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 SUPERFAMILY SSF53748 4 383 4.36E-144 T 31-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 Gene3D G3DSA:3.40.50.1260 165 373 1.7E-150 T 31-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0574 249c438993e39e2946f5c6fc2e41feaa 387 Pfam PF00162 Phosphoglycerate kinase 6 373 2.7E-140 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 SMART SM00422 1 70 1.0E-32 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.0E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.0E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.0E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 SUPERFAMILY SSF46955 1 126 5.13E-40 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.7E-53 T 31-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 Pfam PF09278 MerR, DNA binding 44 108 2.5E-21 T 31-10-2018 IPR015358 Transcription regulator MerR, DNA binding Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 Gene3D G3DSA:1.10.1660.10 1 125 7.9E-38 T 31-10-2018 Y89_5390 b25115bb68686a75a18d18d8467ccf25 132 Pfam PF00376 MerR family regulatory protein 2 39 6.8E-16 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3379 c33e15f4f77848637b250af50ea92252 442 Gene3D G3DSA:3.40.50.300 130 309 8.5E-63 T 31-10-2018 Y89_3379 c33e15f4f77848637b250af50ea92252 442 Pfam PF00158 Sigma-54 interaction domain 140 305 3.9E-71 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_3379 c33e15f4f77848637b250af50ea92252 442 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_3379 c33e15f4f77848637b250af50ea92252 442 Gene3D G3DSA:1.10.8.60 310 387 1.2E-22 T 31-10-2018 Y89_3379 c33e15f4f77848637b250af50ea92252 442 SMART SM00382 159 303 1.2E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3379 c33e15f4f77848637b250af50ea92252 442 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_3379 c33e15f4f77848637b250af50ea92252 442 Gene3D G3DSA:1.10.10.60 392 442 8.5E-9 T 31-10-2018 Y89_3379 c33e15f4f77848637b250af50ea92252 442 Pfam PF02954 Bacterial regulatory protein, Fis family 403 435 2.0E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3379 c33e15f4f77848637b250af50ea92252 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 442 5.2E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3379 c33e15f4f77848637b250af50ea92252 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 405 422 5.2E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3379 c33e15f4f77848637b250af50ea92252 442 SUPERFAMILY SSF46689 352 441 5.63E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3379 c33e15f4f77848637b250af50ea92252 442 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_3379 c33e15f4f77848637b250af50ea92252 442 SUPERFAMILY SSF52540 139 380 4.34E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1927 d3665ed97f781f393539f055f9e28a23 679 SUPERFAMILY SSF51971 337 526 5.12E-43 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 SUPERFAMILY SSF51395 4 366 9.3E-114 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 Gene3D G3DSA:3.50.50.60 475 632 2.7E-113 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1927 d3665ed97f781f393539f055f9e28a23 679 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 10 332 6.5E-87 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 SUPERFAMILY SSF51905 466 657 1.65E-19 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1927 d3665ed97f781f393539f055f9e28a23 679 Gene3D G3DSA:3.20.20.70 6 373 1.9E-124 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 379 642 1.9E-22 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 Gene3D G3DSA:3.40.50.720 379 672 2.7E-113 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 625 641 1.4E-15 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 503 521 1.4E-15 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 463 481 1.4E-15 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 381 400 1.4E-15 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 626 640 2.6E-6 T 31-10-2018 Y89_1927 d3665ed97f781f393539f055f9e28a23 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 380 402 2.6E-6 T 31-10-2018 Y89_5285 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 82 2.9E-32 T 31-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Y89_5285 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 SMART SM00530 14 70 4.8E-5 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_5285 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 SUPERFAMILY SSF47413 10 91 8.3E-23 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5285 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 Gene3D G3DSA:1.10.260.40 1 99 8.1E-33 T 31-10-2018 Y89_5285 1ba7fbe9efcc18d969ef8cbdf2b1258f 101 Pfam PF01381 Helix-turn-helix 22 69 6.0E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 31-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 190 6.9E-99 T 31-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 5.7E-31 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 SUPERFAMILY SSF88659 123 187 7.85E-18 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 SUPERFAMILY SSF88946 1 108 1.38E-32 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 Gene3D G3DSA:1.10.10.10 122 192 1.2E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 Pfam PF04542 Sigma-70 region 2 25 92 1.1E-17 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 Gene3D G3DSA:1.10.1740.10 1 121 5.9E-43 T 31-10-2018 Y89_4596 86dda65e985ac48ceba67694921bb7c1 193 Pfam PF08281 Sigma-70, region 4 132 181 2.9E-18 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Gene3D G3DSA:2.40.50.230 355 457 5.3E-49 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 529 552 2.4E-5 T 31-10-2018 IPR010609 Gp5, C-terminal Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 633 656 5.6E-5 T 31-10-2018 IPR010609 Gp5, C-terminal Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Gene3D G3DSA:2.30.110.50 14 333 6.2E-136 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Gene3D G3DSA:3.55.50.10 98 189 6.2E-136 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 SUPERFAMILY SSF69255 365 452 3.92E-35 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 3.3E-212 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 SUPERFAMILY SSF69349 580 723 7.85E-24 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 SUPERFAMILY SSF69279 189 363 5.1E-37 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 SUPERFAMILY SSF69349 442 607 4.55E-48 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Pfam PF05954 Phage late control gene D protein (GPD) 29 330 1.5E-103 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 524 3.2E-207 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 SUPERFAMILY SSF69279 11 184 1.28E-62 T 31-10-2018 Y89_0106 215706506b007f0399772a0e0c7ec6bb 741 Gene3D G3DSA:3.30.1920.30 224 286 6.2E-136 T 31-10-2018 Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 395 437 8.0E-7 T 31-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 329 352 15.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 283 304 2200.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 354 376 2200.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 243 270 220.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 401 423 7.2 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 305 327 81.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00710 378 400 110.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SUPERFAMILY SSF51126 164 465 4.19E-38 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 Gene3D G3DSA:2.160.20.10 77 499 1.1E-140 T 31-10-2018 IPR012334 Pectin lyase fold Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 Pfam PF05048 Periplasmic copper-binding protein (NosD) 288 438 6.0E-16 T 31-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_1482 1ef521c30108ab31a947c2d1bd62ee94 543 SMART SM00722 262 422 9.3E-20 T 31-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 Pfam PF10102 Domain of unknown function (DUF2341) 71 154 2.4E-22 T 31-10-2018 IPR018765 Domain of unknown function DUF2341 Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 197 341 9.4E-14 T 31-10-2018 Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 SUPERFAMILY SSF49899 135 344 3.37E-23 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 Gene3D G3DSA:2.60.120.200 191 370 7.2E-19 T 31-10-2018 Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 SMART SM00560 201 344 0.0059 T 31-10-2018 IPR006558 LamG-like jellyroll fold Y89_4741 88db01efff8d69dbd84b4ae757cbbdc1 615 Pfam PF01618 MotA/TolQ/ExbB proton channel family 468 581 2.1E-27 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Pfam PF00563 EAL domain 9 239 5.1E-56 T 31-10-2018 IPR001633 EAL domain Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 SMART SM00267 390 577 5.0E-7 T 31-10-2018 IPR000160 GGDEF domain Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Gene3D G3DSA:3.10.580.10 275 394 2.4E-11 T 31-10-2018 Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 SUPERFAMILY SSF141868 8 241 3.01E-67 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 417 492 5.6E-14 T 31-10-2018 IPR000160 GGDEF domain Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Gene3D G3DSA:3.20.20.450 4 248 5.2E-69 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 SUPERFAMILY SSF54631 277 406 7.84E-11 T 31-10-2018 Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Gene3D G3DSA:3.30.70.270 395 573 2.0E-25 T 31-10-2018 Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Pfam PF00990 Diguanylate cyclase, GGDEF domain 406 505 6.6E-14 T 31-10-2018 IPR000160 GGDEF domain Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 SMART SM00052 2 244 1.4E-48 T 31-10-2018 IPR001633 EAL domain Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 SUPERFAMILY SSF55073 407 572 2.43E-23 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1756 03714ba2a64eb94f8e7d309a6e03c4f2 582 Pfam PF00571 CBS domain 278 323 3.5E-5 T 31-10-2018 IPR000644 CBS domain Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 SMART SM00846 6 160 3.7E-68 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 SUPERFAMILY SSF55347 160 324 3.27E-56 T 31-10-2018 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 108 7.7E-32 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 2.4E-24 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 115 128 2.4E-24 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 238 255 2.4E-24 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 181 197 2.4E-24 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 154 172 2.4E-24 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 7 335 9.9E-187 T 31-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 SUPERFAMILY SSF51735 7 175 4.38E-51 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 Gene3D G3DSA:3.40.50.720 7 335 1.0E-118 T 31-10-2018 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 Gene3D G3DSA:3.30.360.10 159 325 1.0E-118 T 31-10-2018 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 166 322 3.0E-50 T 31-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_0573 d9a860de488f409a211a52e6e8bdda8b 353 PIRSF PIRSF000149 4 345 1.6E-131 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Pfam PF11898 Domain of unknown function (DUF3418) 736 1323 3.2E-201 T 31-10-2018 IPR024590 RNA helicase HrpA, C-terminal Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 SMART SM00847 471 561 5.9E-37 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Pfam PF04408 Helicase associated domain (HA2) 474 558 8.2E-20 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 SMART SM00382 87 391 9.2E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Pfam PF00271 Helicase conserved C-terminal domain 294 410 1.5E-11 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 647 723 7.5E-22 T 31-10-2018 IPR011709 Domain of unknown function DUF1605 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Gene3D G3DSA:3.40.50.300 20 247 3.5E-76 T 31-10-2018 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 13 1323 0.0 T 31-10-2018 IPR010222 RNA helicase HrpA GO:0004004 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 SMART SM00490 311 411 1.6E-15 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Gene3D G3DSA:1.20.120.1080 455 552 1.3E-20 T 31-10-2018 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 SUPERFAMILY SSF52540 74 591 2.11E-104 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 Gene3D G3DSA:3.40.50.300 248 428 2.9E-56 T 31-10-2018 Y89_1715 c69df02fb32fc6369b8dff363797c982 1326 SMART SM00487 69 254 3.7E-24 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_3498 1a384626995d9037ad32e2220e004817 236 SUPERFAMILY SSF53254 4 226 1.8E-38 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_3498 1a384626995d9037ad32e2220e004817 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 219 5.9E-23 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_3498 1a384626995d9037ad32e2220e004817 236 Gene3D G3DSA:3.40.50.1240 2 228 8.4E-36 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_3498 1a384626995d9037ad32e2220e004817 236 SMART SM00855 3 179 6.1E-12 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 74 96 3.3E-9 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 138 157 3.3E-9 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 209 228 3.3E-9 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 178 196 3.3E-9 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 9 254 3.6E-134 T 31-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 SUPERFAMILY SSF56534 3 248 9.16E-101 T 31-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily Y89_4487 6e876df85960bf5671508e6d21bc0793 262 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 15 229 4.6E-47 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 117 128 - T 31-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 Y89_4487 6e876df85960bf5671508e6d21bc0793 262 Gene3D G3DSA:1.10.800.10 1 262 3.2E-103 T 31-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 Y89_4127 443f4670375ad1bd623d2a544ee838a7 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 6.4E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4127 443f4670375ad1bd623d2a544ee838a7 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 6.4E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4127 443f4670375ad1bd623d2a544ee838a7 202 Gene3D G3DSA:1.10.357.10 9 202 1.0E-23 T 31-10-2018 Y89_4127 443f4670375ad1bd623d2a544ee838a7 202 SUPERFAMILY SSF46689 12 86 3.85E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4127 443f4670375ad1bd623d2a544ee838a7 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 7.8E-12 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 92 164 5.2E-24 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 PIRSF PIRSF006092 9 166 9.7E-48 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 SUPERFAMILY SSF54534 89 164 1.57E-22 T 31-10-2018 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Hamap MF_00930 Transcription elongation factor GreB [greB]. 10 165 52.946 T 31-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 12 165 5.3E-85 T 31-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Gene3D G3DSA:1.10.287.180 11 82 1.1E-27 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Pfam PF03449 Transcription elongation factor, N-terminal 14 83 9.8E-25 T 31-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Gene3D G3DSA:3.10.50.30 83 166 6.2E-30 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 26 57 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 SUPERFAMILY SSF46557 13 85 1.26E-24 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Y89_2163 adb0da690e71f44b5e2c17a0c4500663 168 Hamap MF_00105 Transcription elongation factor GreA [greA]. 11 163 28.719 T 31-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Y89_0017 334f2e19f7d0f239cc5539764050883c 295 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 8 285 1.4E-44 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y89_0017 334f2e19f7d0f239cc5539764050883c 295 PIRSF PIRSF026649 1 295 9.7E-90 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y89_4199 a65335ed8bffafa8df5685fd292fd43d 177 SMART SM01321 9 132 6.8E-40 T 31-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y89_4199 a65335ed8bffafa8df5685fd292fd43d 177 SUPERFAMILY SSF143422 1 138 9.55E-36 T 31-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Y89_4199 a65335ed8bffafa8df5685fd292fd43d 177 Pfam PF01797 Transposase IS200 like 14 130 2.3E-7 T 31-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y89_4199 a65335ed8bffafa8df5685fd292fd43d 177 Gene3D G3DSA:3.30.70.1290 1 177 2.6E-50 T 31-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Y89_0481 cb787a167dc840e02f0dee4f891d3a84 192 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 13 178 1.8E-43 T 31-10-2018 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 31-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 31-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 SUPERFAMILY SSF51569 2 289 3.87E-107 T 31-10-2018 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 285 1.6E-109 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 286 9.8E-116 T 31-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 Gene3D G3DSA:3.20.20.70 2 292 1.8E-125 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 8.9E-35 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 8.9E-35 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 8.9E-35 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 8.9E-35 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 69.373 T 31-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 PIRSF PIRSF001365 1 292 2.3E-100 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4347 a690f3e6c6bcced61a82ee4278ce937e 292 SMART SM01130 1 289 1.5E-151 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:3.40.50.2300 1 135 1.2E-71 T 31-10-2018 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF52172 3 188 8.08E-10 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4257 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF52540 146 387 4.57E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4257 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_4257 8062ef7305f5987b36d342680dedd65b 490 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 461 1.6E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 461 481 1.6E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:1.10.8.60 318 394 3.1E-29 T 31-10-2018 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 SMART SM00382 166 310 8.6E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:1.10.10.60 425 482 3.2E-12 T 31-10-2018 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Pfam PF02954 Bacterial regulatory protein, Fis family 438 478 2.0E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Pfam PF06490 Flagellar regulatory protein FleQ 6 123 5.0E-30 T 31-10-2018 IPR010518 Flagellar regulatory FleQ Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Pfam PF00158 Sigma-54 interaction domain 146 313 3.8E-76 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 SUPERFAMILY SSF46689 434 480 1.7E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4257 8062ef7305f5987b36d342680dedd65b 490 Gene3D G3DSA:3.40.50.300 136 317 2.0E-68 T 31-10-2018 Y89_3546 b7d2986168d031b5588ff316414b390c 402 Pfam PF13379 NMT1-like family 16 267 7.3E-90 T 31-10-2018 Y89_3546 b7d2986168d031b5588ff316414b390c 402 SUPERFAMILY SSF53850 22 257 1.42E-25 T 31-10-2018 Y89_3546 b7d2986168d031b5588ff316414b390c 402 Gene3D G3DSA:3.40.190.10 110 381 4.5E-117 T 31-10-2018 Y89_3546 b7d2986168d031b5588ff316414b390c 402 Gene3D G3DSA:3.40.190.10 23 376 4.5E-117 T 31-10-2018 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 SUPERFAMILY SSF46689 211 254 5.82E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 SUPERFAMILY SSF51182 10 179 1.78E-20 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 Pfam PF12833 Helix-turn-helix domain 176 252 7.1E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 236 9.2E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 252 9.2E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 SMART SM00342 170 252 1.5E-14 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 205 248 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 Gene3D G3DSA:1.10.10.60 158 256 6.4E-17 T 31-10-2018 Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 Gene3D G3DSA:2.60.120.10 6 89 5.2E-9 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4566 c08f4d81436e0e1d95904502b3f0e688 262 Pfam PF02311 AraC-like ligand binding domain 25 118 3.3E-8 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 SUPERFAMILY SSF51182 46 182 4.01E-27 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 Gene3D G3DSA:2.60.120.10 77 176 3.3E-17 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 Pfam PF01381 Helix-turn-helix 8 59 1.4E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 SUPERFAMILY SSF47413 3 67 1.27E-15 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 SMART SM00530 6 61 4.3E-14 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 Gene3D G3DSA:1.10.260.40 2 69 2.4E-16 T 31-10-2018 Y89_6039 de607ecd043cf1e84278d32a59bf1038 182 Pfam PF07883 Cupin domain 108 175 1.2E-19 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_6186 bad715f9e391bc6365745ba9f254e358 497 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 322 463 2.5E-40 T 31-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6186 bad715f9e391bc6365745ba9f254e358 497 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 13 494 9.5E-231 T 31-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 Y89_6186 bad715f9e391bc6365745ba9f254e358 497 SUPERFAMILY SSF100950 3 222 3.84E-76 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_6186 bad715f9e391bc6365745ba9f254e358 497 Gene3D G3DSA:3.40.1080.20 336 477 2.4E-37 T 31-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily Y89_6186 bad715f9e391bc6365745ba9f254e358 497 Gene3D G3DSA:3.40.1080.10 13 196 4.1E-18 T 31-10-2018 Y89_6186 bad715f9e391bc6365745ba9f254e358 497 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 13 215 1.3E-31 T 31-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Y89_6186 bad715f9e391bc6365745ba9f254e358 497 SUPERFAMILY SSF100950 225 494 2.76E-85 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 Gene3D G3DSA:3.40.1010.10 302 422 3.6E-27 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 310 556 9.5E-85 T 31-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 Pfam PF11760 Cobalamin synthesis G N-terminal 52 130 6.3E-23 T 31-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 SUPERFAMILY SSF53790 307 556 5.1E-53 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 Gene3D G3DSA:3.30.950.10 423 558 1.7E-51 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 Gene3D G3DSA:3.40.50.11220 10 126 9.9E-15 T 31-10-2018 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 SUPERFAMILY SSF159672 8 212 8.24E-42 T 31-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 Y89_2119 1b0120fe70691f65b2134f1f9d021015 559 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 309 520 2.1E-32 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_0810 bf8985cd7a06c0a69b400732b41c62f5 405 Pfam PF01474 Class-II DAHP synthetase family 160 383 5.7E-78 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_0810 bf8985cd7a06c0a69b400732b41c62f5 405 Gene3D G3DSA:3.20.20.70 36 391 2.5E-139 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0810 bf8985cd7a06c0a69b400732b41c62f5 405 SUPERFAMILY SSF51569 4 389 1.54E-143 T 31-10-2018 Y89_3423 bf8985cd7a06c0a69b400732b41c62f5 405 Pfam PF01474 Class-II DAHP synthetase family 160 383 5.7E-78 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_3423 bf8985cd7a06c0a69b400732b41c62f5 405 Gene3D G3DSA:3.20.20.70 36 391 2.5E-139 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_3423 bf8985cd7a06c0a69b400732b41c62f5 405 SUPERFAMILY SSF51569 4 389 1.54E-143 T 31-10-2018 Y89_0958 123abd61caec8e10874139fc2c9e2fd3 232 SUPERFAMILY SSF56925 28 232 3.14E-26 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Y89_0958 123abd61caec8e10874139fc2c9e2fd3 232 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 224 232 - T 31-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 Y89_0958 123abd61caec8e10874139fc2c9e2fd3 232 Pfam PF03922 OmpW family 28 232 1.2E-76 T 31-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 Y89_0958 123abd61caec8e10874139fc2c9e2fd3 232 Gene3D G3DSA:2.40.160.20 23 232 2.4E-78 T 31-10-2018 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Gene3D G3DSA:1.10.357.10 59 200 7.7E-52 T 31-10-2018 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 SUPERFAMILY SSF48498 76 200 6.43E-43 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Pfam PF08362 YcdC-like protein, C-terminal region 59 200 9.1E-62 T 31-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Gene3D G3DSA:1.10.10.60 7 58 1.3E-19 T 31-10-2018 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 SUPERFAMILY SSF46689 3 80 1.03E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 55 1.3E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3834 5d13dfa2bbbfee80a48f818ce0cb7c80 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 SUPERFAMILY SSF54999 6 101 1.12E-36 T 31-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Y89_0758 84d268ba9f127038231991402a4d5e4b 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 31-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 31-10-2018 IPR027486 Ribosomal protein S10 domain Y89_0758 84d268ba9f127038231991402a4d5e4b 103 Gene3D G3DSA:3.30.70.600 1 103 7.7E-39 T 31-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Y89_0758 84d268ba9f127038231991402a4d5e4b 103 SMART SM01403 7 101 9.7E-56 T 31-10-2018 IPR027486 Ribosomal protein S10 domain Y89_0758 84d268ba9f127038231991402a4d5e4b 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.3E-46 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.7E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.7E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.7E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0758 84d268ba9f127038231991402a4d5e4b 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.007 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0265 cc737849bbb02198901fd0f84c12a261 67 SUPERFAMILY SSF53098 2 64 6.83E-12 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_0265 cc737849bbb02198901fd0f84c12a261 67 Pfam PF13683 Integrase core domain 1 60 6.8E-21 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_0972 2dc0859e4533e7c3d3f9b09f400300cc 159 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 21 147 4.2E-44 T 31-10-2018 IPR011605 NusB antitermination factor GO:0006353 Y89_0972 2dc0859e4533e7c3d3f9b09f400300cc 159 Gene3D G3DSA:1.10.940.10 15 154 2.0E-48 T 31-10-2018 IPR035926 NusB-like superfamily Y89_0972 2dc0859e4533e7c3d3f9b09f400300cc 159 SUPERFAMILY SSF48013 19 150 3.14E-43 T 31-10-2018 IPR035926 NusB-like superfamily Y89_0972 2dc0859e4533e7c3d3f9b09f400300cc 159 Pfam PF01029 NusB family 22 146 6.5E-34 T 31-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y89_0972 2dc0859e4533e7c3d3f9b09f400300cc 159 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 19 150 22.445 T 31-10-2018 IPR011605 NusB antitermination factor GO:0006353 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 SUPERFAMILY SSF46785 1 87 1.33E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1884 a5d7258747e46deef42901de44c8aacd 306 Pfam PF03466 LysR substrate binding domain 87 286 5.1E-47 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1884 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:1.10.10.10 1 88 3.2E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1884 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:3.40.190.10 162 257 1.2E-62 T 31-10-2018 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 SUPERFAMILY SSF53850 89 287 1.26E-47 T 31-10-2018 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 8.0E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1884 a5d7258747e46deef42901de44c8aacd 306 Gene3D G3DSA:3.40.190.10 90 283 1.2E-62 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF47384 479 560 2.75E-12 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:3.30.565.10 560 717 1.5E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF08448 PAS fold 329 437 3.9E-26 T 31-10-2018 IPR013656 PAS fold-4 Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00387 604 715 2.1E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:1.10.287.130 460 558 6.7E-14 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF00512 His Kinase A (phospho-acceptor) domain 494 560 4.4E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF55874 551 715 3.67E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:3.30.450.20 199 320 8.8E-14 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:3.30.450.20 76 198 4.7E-6 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 668 1.1E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3348 1096b41b6e680906986e79538fa24da8 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 640 654 1.1E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3348 1096b41b6e680906986e79538fa24da8 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 699 712 1.1E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3348 1096b41b6e680906986e79538fa24da8 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 675 693 1.1E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:3.40.50.2300 728 861 6.3E-16 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 318 442 3.0E-10 T 31-10-2018 IPR000014 PAS domain Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00091 88 155 25.0 T 31-10-2018 IPR000014 PAS domain Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00091 322 388 38.0 T 31-10-2018 IPR000014 PAS domain Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00091 207 272 0.52 T 31-10-2018 IPR000014 PAS domain Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00388 494 560 7.4E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Gene3D G3DSA:3.30.450.20 321 451 1.5E-23 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 605 714 4.8E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF55785 193 308 3.49E-8 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF00072 Response regulator receiver domain 740 852 1.2E-10 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF12860 PAS fold 94 194 3.6E-9 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 Pfam PF12860 PAS fold 213 314 5.8E-14 T 31-10-2018 Y89_3348 1096b41b6e680906986e79538fa24da8 862 SMART SM00448 738 852 2.8E-8 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF55785 82 188 5.58E-5 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF52172 737 858 5.12E-18 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3348 1096b41b6e680906986e79538fa24da8 862 SUPERFAMILY SSF55785 307 433 3.49E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3532 bf4b518ccf72834800dc3ce776b1f816 612 SUPERFAMILY SSF56601 34 383 6.41E-71 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_3532 bf4b518ccf72834800dc3ce776b1f816 612 Pfam PF00144 Beta-lactamase 43 380 4.2E-61 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_3532 bf4b518ccf72834800dc3ce776b1f816 612 Gene3D G3DSA:3.40.710.10 38 379 9.5E-72 T 31-10-2018 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 168.207 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 Gene3D G3DSA:3.60.90.10 98 186 2.6E-7 T 31-10-2018 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 4 262 2.7E-147 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 PIRSF PIRSF001356 1 264 6.8E-150 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 SUPERFAMILY SSF56276 44 174 4.71E-25 T 31-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y89_0727 3f160cfc4b96b8c8251ee0b41a820d8e 264 Pfam PF02675 S-adenosylmethionine decarboxylase 36 170 1.1E-31 T 31-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_3082 eb401b3b0081725a06170b82179cba6e 345 Gene3D G3DSA:3.40.50.720 130 311 4.4E-128 T 31-10-2018 Y89_3082 eb401b3b0081725a06170b82179cba6e 345 SMART SM00829 22 339 2.0E-5 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_3082 eb401b3b0081725a06170b82179cba6e 345 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 3.9E-43 T 31-10-2018 Y89_3082 eb401b3b0081725a06170b82179cba6e 345 Pfam PF00107 Zinc-binding dehydrogenase 161 300 5.7E-18 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_3082 eb401b3b0081725a06170b82179cba6e 345 SUPERFAMILY SSF50129 7 147 9.6E-48 T 31-10-2018 IPR011032 GroES-like superfamily Y89_3082 eb401b3b0081725a06170b82179cba6e 345 SUPERFAMILY SSF51735 127 305 1.63E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3082 eb401b3b0081725a06170b82179cba6e 345 Gene3D G3DSA:3.90.180.10 19 339 4.4E-128 T 31-10-2018 Y89_4557 869068b599a6131a2feff646d4b71f49 98 Pfam PF12365 Protein of unknown function (DUF3649) 64 90 1.8E-7 T 31-10-2018 IPR022109 Protein of unknown function DUF3649 Y89_4839 1a141869bf5d5eacedc988bfd9c9645a 100 SMART SM00418 7 98 9.8E-12 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_4839 1a141869bf5d5eacedc988bfd9c9645a 100 SUPERFAMILY SSF46785 3 97 1.15E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4839 1a141869bf5d5eacedc988bfd9c9645a 100 Gene3D G3DSA:1.10.10.10 3 99 2.1E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4839 1a141869bf5d5eacedc988bfd9c9645a 100 Pfam PF12840 Helix-turn-helix domain 6 78 1.3E-17 T 31-10-2018 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:1.10.150.300 113 202 4.5E-150 T 31-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:3.10.20.30 48 364 4.5E-150 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 SUPERFAMILY SSF81271 282 363 5.01E-38 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 45.261 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Pfam PF01926 50S ribosome-binding GTPase 5 121 5.0E-22 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 2.1E-41 T 31-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 5.2E-162 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 PIRSF PIRSF006641 1 366 1.3E-159 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.2E-32 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-32 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.2E-32 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-32 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 SUPERFAMILY SSF52540 3 304 1.74E-81 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5284 1f09514349a2e4a5af6a81dccb56358b 366 Gene3D G3DSA:3.40.50.300 4 281 4.5E-150 T 31-10-2018 Y89_3560 593c4af23b6a09f72659a5c2766d9cbd 162 SUPERFAMILY SSF89562 4 158 3.79E-52 T 31-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Y89_3560 593c4af23b6a09f72659a5c2766d9cbd 162 Gene3D G3DSA:3.50.30.40 1 162 7.0E-69 T 31-10-2018 Y89_3560 593c4af23b6a09f72659a5c2766d9cbd 162 Pfam PF03737 Aldolase/RraA 5 153 3.2E-46 T 31-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Y89_3560 593c4af23b6a09f72659a5c2766d9cbd 162 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 7.3E-73 T 31-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 Y89_1879 3901f94da077938c090179fecbf49eed 107 SUPERFAMILY SSF47781 34 104 1.33E-26 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_1879 3901f94da077938c090179fecbf49eed 107 Gene3D G3DSA:1.10.150.320 30 105 1.6E-19 T 31-10-2018 Y89_1879 3901f94da077938c090179fecbf49eed 107 Pfam PF12836 Helix-hairpin-helix motif 42 104 2.3E-22 T 31-10-2018 Y89_1879 3901f94da077938c090179fecbf49eed 107 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 44 105 2.5E-20 T 31-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain Y89_1879 3901f94da077938c090179fecbf49eed 107 SMART SM00278 84 103 10.0 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_1879 3901f94da077938c090179fecbf49eed 107 SMART SM00278 54 73 9.4 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_5633 e9c7b42f1c41226974ee4989fb6407b4 236 Gene3D G3DSA:3.40.50.10610 21 190 1.0E-7 T 31-10-2018 Y89_5633 e9c7b42f1c41226974ee4989fb6407b4 236 SUPERFAMILY SSF159594 28 189 3.14E-21 T 31-10-2018 Y89_5633 e9c7b42f1c41226974ee4989fb6407b4 236 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 30 186 1.4E-37 T 31-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 Pfam PF02567 Phenazine biosynthesis-like protein 8 271 5.1E-32 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 Gene3D G3DSA:3.10.310.10 6 271 6.8E-102 T 31-10-2018 Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 Gene3D G3DSA:3.10.310.10 120 269 6.8E-102 T 31-10-2018 Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 PIRSF PIRSF016184 1 282 1.2E-82 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 SUPERFAMILY SSF54506 1 280 2.62E-50 T 31-10-2018 Y89_5328 3ec13d13fbc3233377665f7a8dba76fc 284 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 276 3.7E-37 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 56 1.2E-12 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 SUPERFAMILY SSF46689 5 72 2.26E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.2E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.2E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 SUPERFAMILY SSF48498 79 184 8.9E-14 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_4110 6f6fa15fe03627599bd2c968fe0bf0b9 186 Gene3D G3DSA:1.10.357.10 4 184 1.9E-38 T 31-10-2018 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 SUPERFAMILY SSF53850 90 283 2.53E-28 T 31-10-2018 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 Pfam PF03466 LysR substrate binding domain 88 281 4.1E-30 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 Gene3D G3DSA:3.40.190.10 94 262 8.8E-45 T 31-10-2018 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.5E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 Gene3D G3DSA:3.40.190.10 160 256 8.8E-45 T 31-10-2018 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 SUPERFAMILY SSF46785 1 110 3.32E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2695 b9378b94bac8f4b1b0d8fead85f9bd66 292 Gene3D G3DSA:1.10.10.10 1 84 7.4E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0981 bf8f1e2ff8e3b7c71eee7ffcea4e83a6 295 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site Y89_0981 bf8f1e2ff8e3b7c71eee7ffcea4e83a6 295 Pfam PF00348 Polyprenyl synthetase 29 258 2.5E-58 T 31-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Y89_0981 bf8f1e2ff8e3b7c71eee7ffcea4e83a6 295 Gene3D G3DSA:1.10.600.10 1 295 6.1E-123 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily Y89_0981 bf8f1e2ff8e3b7c71eee7ffcea4e83a6 295 SUPERFAMILY SSF48576 5 287 1.41E-86 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily Y89_0981 bf8f1e2ff8e3b7c71eee7ffcea4e83a6 295 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 214 226 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site Y89_5764 15d2a33cf8017e31522b7274e0a48927 510 SUPERFAMILY SSF48557 7 494 1.73E-162 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_5764 15d2a33cf8017e31522b7274e0a48927 510 Gene3D G3DSA:1.10.275.10 2 197 3.9E-52 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_5764 15d2a33cf8017e31522b7274e0a48927 510 Gene3D G3DSA:1.20.200.10 198 502 1.4E-107 T 31-10-2018 Y89_5764 15d2a33cf8017e31522b7274e0a48927 510 Pfam PF00221 Aromatic amino acid lyase 14 470 1.4E-160 T 31-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Pfam PF07724 AAA domain (Cdc48 subfamily) 609 774 8.1E-42 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Gene3D G3DSA:3.40.50.300 562 778 1.5E-65 T 31-10-2018 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SUPERFAMILY SSF81923 18 126 4.71E-11 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 339 7.2E-10 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 299 311 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SMART SM01086 780 872 1.8E-7 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Gene3D G3DSA:3.40.50.300 353 556 3.8E-48 T 31-10-2018 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 863 0.0 T 31-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Gene3D G3DSA:1.10.8.60 783 872 7.0E-11 T 31-10-2018 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SUPERFAMILY SSF52540 558 855 6.1E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3672 9fca13f2c17269331fe04477fcafde97 875 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 613 631 2.0E-33 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 687 705 2.0E-33 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 720 734 2.0E-33 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 658 676 2.0E-33 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 27 73 3.1E-4 T 31-10-2018 IPR004176 Clp, N-terminal Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SUPERFAMILY SSF52540 165 542 1.27E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Gene3D G3DSA:3.40.50.300 163 352 3.5E-64 T 31-10-2018 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 785 854 5.6E-10 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_3672 9fca13f2c17269331fe04477fcafde97 875 Gene3D G3DSA:1.10.1780.10 5 150 2.7E-29 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SMART SM00382 609 770 2.8E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3672 9fca13f2c17269331fe04477fcafde97 875 SMART SM00382 203 348 2.6E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3672 9fca13f2c17269331fe04477fcafde97 875 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 643 661 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 Y89_1798 7e82fa408f3e66517ab5487be0e7f5f9 446 Pfam PF05230 MASE2 domain 2 91 2.7E-29 T 31-10-2018 IPR007894 MASE2 Y89_1798 7e82fa408f3e66517ab5487be0e7f5f9 446 SUPERFAMILY SSF55073 204 393 1.11E-61 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1798 7e82fa408f3e66517ab5487be0e7f5f9 446 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 208 390 1.1E-39 T 31-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y89_1798 7e82fa408f3e66517ab5487be0e7f5f9 446 SMART SM00044 171 381 2.0E-34 T 31-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Y89_1798 7e82fa408f3e66517ab5487be0e7f5f9 446 Gene3D G3DSA:3.30.70.1230 202 399 2.7E-84 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 31-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 SUPERFAMILY SSF51569 22 330 1.59E-98 T 31-10-2018 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 SUPERFAMILY SSF89000 388 437 1.26E-13 T 31-10-2018 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 8 549 54.366 T 31-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 31-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 7 548 9.9E-242 T 31-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 Gene3D G3DSA:3.20.20.70 12 376 8.5E-156 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 SMART SM00917 422 548 7.7E-31 T 31-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 SUPERFAMILY SSF110921 443 547 1.96E-33 T 31-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 Gene3D G3DSA:3.30.160.270 377 547 1.9E-56 T 31-10-2018 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 Pfam PF00682 HMGL-like 33 313 1.8E-77 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y89_1234 a507088eb505b280a730cf69cf6ab04d 556 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 547 9.6E-29 T 31-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_4210 281907765607f736d3129b74e796232d 238 SUPERFAMILY SSF46785 10 81 8.35E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4210 281907765607f736d3129b74e796232d 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 6.0E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 SMART SM00866 92 231 3.7E-30 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 1.1E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 1.1E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 SUPERFAMILY SSF64288 59 235 1.29E-41 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_4210 281907765607f736d3129b74e796232d 238 Pfam PF07702 UTRA domain 92 230 4.1E-37 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 Gene3D G3DSA:1.10.10.10 6 77 1.5E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4210 281907765607f736d3129b74e796232d 238 SMART SM00345 12 71 5.1E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4210 281907765607f736d3129b74e796232d 238 Gene3D G3DSA:3.40.1410.10 82 235 4.1E-35 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 1.8E-73 T 31-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 SUPERFAMILY SSF51735 422 549 2.23E-26 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 Pfam PF00999 Sodium/hydrogen exchanger family 12 384 4.0E-76 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 Gene3D G3DSA:3.40.50.720 418 553 4.3E-26 T 31-10-2018 Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 Gene3D G3DSA:1.20.1530.20 4 398 1.3E-78 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_6258 a1b3b0a42c45b14253fdc103a6891cc7 567 Pfam PF02254 TrkA-N domain 424 537 6.0E-23 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 Gene3D G3DSA:3.40.50.620 4 333 2.7E-109 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 2.4E-17 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 2.4E-17 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 2.4E-17 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 204 214 2.4E-17 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 SUPERFAMILY SSF52374 4 333 5.18E-76 T 31-10-2018 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 Pfam PF00579 tRNA synthetases class I (W and Y) 3 243 9.3E-50 T 31-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 20 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 334 37.196 T 31-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 Gene3D G3DSA:1.10.240.10 199 301 2.7E-109 T 31-10-2018 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 333 3.8E-93 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Y89_4928 3b94a07daa810f73b307fd24aa9d5bfb 448 SUPERFAMILY SSF160113 356 398 2.49E-6 T 31-10-2018 IPR036913 YegP-like superfamily Y89_2047 1e2f0e31fb1eb64ad46b6e39a77b242e 326 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 75 285 6.8E-48 T 31-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 Y89_2047 1e2f0e31fb1eb64ad46b6e39a77b242e 326 Gene3D G3DSA:3.40.1750.20 177 245 2.2E-65 T 31-10-2018 Y89_2047 1e2f0e31fb1eb64ad46b6e39a77b242e 326 Pfam PF01343 Peptidase family S49 141 289 1.1E-34 T 31-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Y89_2047 1e2f0e31fb1eb64ad46b6e39a77b242e 326 Gene3D G3DSA:3.90.226.10 77 276 2.2E-65 T 31-10-2018 Y89_2047 1e2f0e31fb1eb64ad46b6e39a77b242e 326 SUPERFAMILY SSF52096 54 275 1.94E-43 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 Pfam PF01047 MarR family 39 96 1.6E-12 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 SMART SM00347 32 132 5.5E-24 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 6.4E-17 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 6.4E-17 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 6.4E-17 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 6.4E-17 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 ProSitePatterns PS01117 MarR-type HTH domain signature. 71 105 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 SUPERFAMILY SSF46785 14 145 9.73E-31 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5831 897c9d3633b9f27494c0f24081323bf9 156 Gene3D G3DSA:1.10.10.10 3 146 3.4E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 Pfam PF00691 OmpA family 65 159 1.9E-20 T 31-10-2018 IPR006665 OmpA-like domain Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 Gene3D G3DSA:3.30.1330.60 30 168 3.1E-49 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 95 110 1.4E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 65 87 1.4E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 PRINTS PR01021 OMPA domain signature 110 126 1.4E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4233 196afbc83f044f0fa8372dd10ac471db 168 SUPERFAMILY SSF103088 52 165 3.14E-33 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 SUPERFAMILY SSF56935 134 883 1.34E-100 T 31-10-2018 Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Gene3D G3DSA:3.55.50.30 43 114 1.1E-17 T 31-10-2018 Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Pfam PF07715 TonB-dependent Receptor Plug Domain 150 267 3.5E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Pfam PF00593 TonB dependent receptor 376 881 8.4E-46 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Gene3D G3DSA:2.170.130.10 130 271 3.2E-34 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 SMART SM00965 65 116 3.8E-12 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Pfam PF07660 Secretin and TonB N terminus short domain 67 115 7.0E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3185 6478b97978306d5d99a4688f8eb50acf 883 Gene3D G3DSA:2.40.170.20 272 883 1.1E-56 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 Pfam PF13414 TPR repeat 47 82 8.4E-7 T 31-10-2018 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 141 174 5.2E-4 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 71 104 42.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 SMART SM00028 37 70 0.003 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 240 4.7E-74 T 31-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 Pfam PF13424 Tetratricopeptide repeat 105 172 1.5E-8 T 31-10-2018 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 SUPERFAMILY SSF48452 38 203 1.37E-24 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1221 69dc5b9e5d5d9255d51f639eecef8626 252 Gene3D G3DSA:1.25.40.10 32 252 3.3E-61 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 Pfam PF02321 Outer membrane efflux protein 68 256 2.9E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 Pfam PF02321 Outer membrane efflux protein 287 465 3.7E-21 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 467 4.3E-104 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 Gene3D G3DSA:2.20.200.10 105 356 1.4E-154 T 31-10-2018 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 Gene3D G3DSA:1.20.1600.10 58 468 1.4E-154 T 31-10-2018 Y89_2697 cde3dbada3aff00c86ac985b718851c7 472 SUPERFAMILY SSF56954 12 470 9.16E-102 T 31-10-2018 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 Gene3D G3DSA:1.20.210.10 30 564 1.7E-189 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 6.2E-134 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 SUPERFAMILY SSF81442 43 559 3.53E-177 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.5E-95 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4032 0c882b8b57b5928674bb3509b15b0d2f 658 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 31-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 Pfam PF01841 Transglutaminase-like superfamily 349 465 2.8E-23 T 31-10-2018 IPR002931 Transglutaminase-like Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 SUPERFAMILY SSF54001 270 600 2.1E-74 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 SMART SM00460 396 467 3.2E-20 T 31-10-2018 IPR002931 Transglutaminase-like Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 Pfam PF11992 Domain of unknown function (DUF3488) 9 321 6.8E-109 T 31-10-2018 IPR021878 Protein of unknown function DUF3488 Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 Pfam PF13559 Domain of unknown function (DUF4129) 581 642 1.5E-10 T 31-10-2018 IPR025403 Domain of unknown function DUF4129 Y89_2149 ea3bd46c0e458d94c9939a6d203fae22 668 Gene3D G3DSA:3.10.620.30 336 484 1.9E-22 T 31-10-2018 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:1.10.10.10 1 85 2.2E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:3.40.190.10 92 291 4.1E-89 T 31-10-2018 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.5E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 SUPERFAMILY SSF46785 1 85 6.2E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 Gene3D G3DSA:3.40.190.10 161 268 4.1E-89 T 31-10-2018 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 Pfam PF03466 LysR substrate binding domain 88 294 7.7E-44 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6082 935590f0a244a1c748ceaae8427e68fb 310 SUPERFAMILY SSF53850 88 294 1.02E-37 T 31-10-2018 Y89_2659 cf8096f28a1c54530dfa1b92f9582272 165 Pfam PF08534 Redoxin 19 162 1.1E-27 T 31-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Y89_2659 cf8096f28a1c54530dfa1b92f9582272 165 SUPERFAMILY SSF52833 1 163 1.64E-42 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2659 cf8096f28a1c54530dfa1b92f9582272 165 Hamap MF_00269 Thiol peroxidase [tpx]. 3 165 38.273 T 31-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 Y89_2659 cf8096f28a1c54530dfa1b92f9582272 165 Gene3D G3DSA:3.40.30.10 1 165 5.2E-47 T 31-10-2018 Y89_2659 cf8096f28a1c54530dfa1b92f9582272 165 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 31-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 223 1.0E-26 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Gene3D G3DSA:2.40.110.10 127 240 3.7E-46 T 31-10-2018 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 388 2.1E-39 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 SUPERFAMILY SSF56645 6 248 2.49E-89 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 PIRSF PIRSF016578 14 393 2.5E-18 T 31-10-2018 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 SUPERFAMILY SSF47203 234 391 3.22E-44 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 124 3.3E-39 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 130 142 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Gene3D G3DSA:1.10.540.10 3 126 1.5E-49 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 Gene3D G3DSA:1.20.140.10 241 393 6.1E-45 T 31-10-2018 Y89_2522 a129201f61a7fd57ad031fef826ac82e 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 347 366 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Gene3D G3DSA:1.10.10.760 428 472 1.7E-158 T 31-10-2018 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 PIRSF PIRSF006337 3 579 6.4E-226 T 31-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Pfam PF00128 Alpha amylase, catalytic domain 133 210 2.1E-8 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Gene3D G3DSA:2.60.40.10 3 98 5.7E-26 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 19 536 1.1E-196 T 31-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 SUPERFAMILY SSF81296 5 92 8.75E-22 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Pfam PF11941 Domain of unknown function (DUF3459) 487 576 4.8E-16 T 31-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 7 70 4.3E-7 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 Gene3D G3DSA:3.20.20.80 102 496 1.7E-158 T 31-10-2018 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 SMART SM00642 114 495 5.0E-8 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3112 a96baed4fc913d423ba97e2a73f6a950 583 SUPERFAMILY SSF51445 89 498 1.7E-102 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Pfam PF02954 Bacterial regulatory protein, Fis family 579 615 4.2E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 SUPERFAMILY SSF55781 69 212 4.25E-10 T 31-10-2018 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Gene3D G3DSA:3.40.50.300 306 489 5.3E-56 T 31-10-2018 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 404 419 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Gene3D G3DSA:1.10.8.60 490 564 2.6E-13 T 31-10-2018 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 598 618 3.3E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 581 598 3.3E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 529 538 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 SUPERFAMILY SSF46689 528 617 4.78E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Gene3D G3DSA:1.10.10.60 578 617 3.9E-10 T 31-10-2018 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 341 354 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 SUPERFAMILY SSF52540 321 559 4.37E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 SMART SM00382 337 481 1.4E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Pfam PF00158 Sigma-54 interaction domain 322 480 1.1E-61 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Gene3D G3DSA:3.30.450.40 21 212 1.4E-40 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0875 4ca21cb7558df7405e89b1923495bcd3 625 Pfam PF01590 GAF domain 77 203 4.1E-8 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_1259 138526917347b790307d20fdf42df3ac 463 SUPERFAMILY SSF49503 322 457 8.35E-32 T 31-10-2018 IPR008972 Cupredoxin Y89_1259 138526917347b790307d20fdf42df3ac 463 Gene3D G3DSA:2.60.40.420 28 155 1.1E-38 T 31-10-2018 IPR008972 Cupredoxin Y89_1259 138526917347b790307d20fdf42df3ac 463 Pfam PF07731 Multicopper oxidase 358 458 6.6E-25 T 31-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Y89_1259 138526917347b790307d20fdf42df3ac 463 Gene3D G3DSA:2.60.40.420 309 459 2.4E-36 T 31-10-2018 IPR008972 Cupredoxin Y89_1259 138526917347b790307d20fdf42df3ac 463 Gene3D G3DSA:2.60.40.420 157 308 5.1E-18 T 31-10-2018 IPR008972 Cupredoxin Y89_1259 138526917347b790307d20fdf42df3ac 463 SUPERFAMILY SSF49503 160 279 1.16E-18 T 31-10-2018 IPR008972 Cupredoxin Y89_1259 138526917347b790307d20fdf42df3ac 463 ProSitePatterns PS00080 Multicopper oxidases signature 2. 440 451 - T 31-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Y89_1259 138526917347b790307d20fdf42df3ac 463 ProSitePatterns PS00079 Multicopper oxidases signature 1. 435 455 - T 31-10-2018 IPR033138 Multicopper oxidases, conserved site Y89_1259 138526917347b790307d20fdf42df3ac 463 Pfam PF07732 Multicopper oxidase 57 159 1.7E-34 T 31-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Y89_1259 138526917347b790307d20fdf42df3ac 463 SUPERFAMILY SSF49503 36 158 4.53E-35 T 31-10-2018 IPR008972 Cupredoxin Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 SMART SM00155 108 135 0.0013 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 SMART SM00155 278 305 2.0 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 Gene3D G3DSA:3.30.870.10 4 172 3.0E-37 T 31-10-2018 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 SUPERFAMILY SSF56024 183 352 9.2E-40 T 31-10-2018 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 SUPERFAMILY SSF56024 3 175 7.53E-42 T 31-10-2018 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 Gene3D G3DSA:3.30.870.10 185 353 5.0E-27 T 31-10-2018 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 Pfam PF13091 PLD-like domain 206 330 6.4E-25 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 Pfam PF13091 PLD-like domain 24 140 1.9E-14 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_3121 a767ee9baf586c526d5a7f2f0c710891 401 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 376 52.906 T 31-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 3.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 3.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 3.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 Gene3D G3DSA:3.40.50.720 2 265 3.0E-87 T 31-10-2018 Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 250 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 6.0E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 203 4.2E-6 T 31-10-2018 Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 Pfam PF00106 short chain dehydrogenase 15 201 9.8E-62 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0874 0cf6e0f4c8c4cd57cd97a502d7ec7191 266 SUPERFAMILY SSF51735 9 265 1.25E-80 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4532 3c19669909b6b7b1dca23ee04177c7f8 227 Gene3D G3DSA:1.10.357.10 37 216 1.4E-22 T 31-10-2018 Y89_4532 3c19669909b6b7b1dca23ee04177c7f8 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 87 9.5E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4532 3c19669909b6b7b1dca23ee04177c7f8 227 SUPERFAMILY SSF46689 39 99 3.49E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4532 3c19669909b6b7b1dca23ee04177c7f8 227 ProSitePatterns PS01081 TetR-type HTH domain signature. 54 85 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.9E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 3.9E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 3.9E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.9E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 TIGRFAM TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase 4 279 7.2E-192 T 31-10-2018 IPR011942 Poly(3-hydroxyalkanoate) depolymerase Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 Pfam PF00561 alpha/beta hydrolase fold 30 251 1.4E-28 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 Gene3D G3DSA:3.40.50.1820 7 267 4.5E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5729 0dd70ae705fbbd14789ba267ebeb9280 285 SUPERFAMILY SSF53474 3 267 9.4E-55 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2732 07ff96bb647b7b315ea579d461637721 304 SUPERFAMILY SSF46785 5 116 5.69E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2732 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:3.40.190.10 98 283 1.3E-42 T 31-10-2018 Y89_2732 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.1E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2732 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.1E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2732 07ff96bb647b7b315ea579d461637721 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.1E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2732 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:1.10.10.10 6 94 3.1E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2732 07ff96bb647b7b315ea579d461637721 304 Gene3D G3DSA:3.40.190.10 172 273 1.3E-42 T 31-10-2018 Y89_2732 07ff96bb647b7b315ea579d461637721 304 SUPERFAMILY SSF53850 97 302 1.78E-38 T 31-10-2018 Y89_2732 07ff96bb647b7b315ea579d461637721 304 Pfam PF03466 LysR substrate binding domain 95 301 2.8E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2732 07ff96bb647b7b315ea579d461637721 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.1E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 31-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 Gene3D G3DSA:3.30.70.141 1 141 5.4E-60 T 31-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 SUPERFAMILY SSF54919 1 140 1.01E-58 T 31-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 SMART SM00562 3 140 5.0E-91 T 31-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 2.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 2.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 2.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 2.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 2.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 Pfam PF00334 Nucleoside diphosphate kinase 4 137 6.6E-58 T 31-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_1219 7abc5630f4564a0b67fb3ded0049a901 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 36.42 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 80 94 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 Gene3D G3DSA:3.90.180.10 18 341 1.3E-105 T 31-10-2018 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 SUPERFAMILY SSF50129 9 192 3.96E-51 T 31-10-2018 IPR011032 GroES-like superfamily Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 SUPERFAMILY SSF51735 159 315 8.97E-39 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 Gene3D G3DSA:3.40.50.720 170 306 1.3E-105 T 31-10-2018 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 Pfam PF00107 Zinc-binding dehydrogenase 194 320 4.4E-28 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 Pfam PF13823 Alcohol dehydrogenase GroES-associated 11 28 2.6E-6 T 31-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 SMART SM00829 18 359 1.0E-4 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_0869 357dd26bc0ceed05ab21b7bd8c48da9d 363 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 151 2.8E-32 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 Pfam PF01026 TatD related DNase 4 256 2.2E-66 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 PIRSF PIRSF005902 1 259 4.2E-70 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 193 209 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 SUPERFAMILY SSF51556 3 258 1.45E-79 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 Gene3D G3DSA:3.20.20.140 1 258 2.6E-81 T 31-10-2018 Y89_1463 c93ae1a6db61a01946d996340d62cd3d 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y89_3674 0069dce9ecc94dbc4248fdee9f434924 595 PIRSF PIRSF028304 1 595 1.0E-183 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_3674 0069dce9ecc94dbc4248fdee9f434924 595 Pfam PF05947 Type VI secretion system, TssF 5 594 4.7E-179 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_3674 0069dce9ecc94dbc4248fdee9f434924 595 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 3 595 5.5E-181 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.3E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 Gene3D G3DSA:3.40.190.10 91 288 6.1E-62 T 31-10-2018 Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 SUPERFAMILY SSF53850 89 295 3.44E-47 T 31-10-2018 Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 SUPERFAMILY SSF46785 3 111 3.33E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 Gene3D G3DSA:1.10.10.10 3 88 3.7E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 Pfam PF03466 LysR substrate binding domain 88 292 5.4E-47 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5985 1feadd820bf1e2d420addd82cfc24f34 298 Gene3D G3DSA:3.40.190.10 163 264 6.1E-62 T 31-10-2018 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 Gene3D G3DSA:1.10.10.10 1 86 1.5E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 5.9E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 Gene3D G3DSA:3.40.190.10 166 266 1.6E-26 T 31-10-2018 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 Pfam PF03466 LysR substrate binding domain 87 274 5.7E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 SUPERFAMILY SSF46785 1 110 8.44E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 SUPERFAMILY SSF53850 87 273 6.15E-31 T 31-10-2018 Y89_2487 6db36c1337a8cab83cd6556c474f5491 298 Gene3D G3DSA:3.40.190.10 90 272 1.6E-26 T 31-10-2018 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 SUPERFAMILY SSF46689 210 257 3.36E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 Gene3D G3DSA:2.60.120.10 12 89 3.4E-8 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 SMART SM00342 172 253 1.2E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 Pfam PF02311 AraC-like ligand binding domain 24 105 3.8E-7 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 Gene3D G3DSA:1.10.10.60 157 259 2.7E-21 T 31-10-2018 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 SUPERFAMILY SSF51182 14 177 3.26E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 249 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4495 57b447c15be762ca1ee98129196fbdcb 262 Pfam PF12833 Helix-turn-helix domain 178 254 8.0E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Gene3D G3DSA:3.30.870.10 548 731 1.2E-71 T 31-10-2018 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Pfam PF13089 Polyphosphate kinase N-terminal domain 53 158 2.0E-35 T 31-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 53 726 4.3E-288 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Hamap MF_00347 Polyphosphate kinase [ppk]. 50 730 28.765 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Gene3D G3DSA:3.30.1840.10 46 360 6.8E-103 T 31-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 SUPERFAMILY SSF56024 548 727 1.32E-73 T 31-10-2018 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 SUPERFAMILY SSF143724 156 361 1.0E-61 T 31-10-2018 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 PIRSF PIRSF015589 23 734 8.7E-288 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Gene3D G3DSA:3.30.870.10 365 547 1.4E-68 T 31-10-2018 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Pfam PF13090 Polyphosphate kinase C-terminal domain 379 725 2.8E-153 T 31-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 SUPERFAMILY SSF56024 362 544 1.54E-56 T 31-10-2018 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 Pfam PF02503 Polyphosphate kinase middle domain 169 369 1.7E-63 T 31-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Y89_5930 bb385f7bf4fb31692817e5ed40c489ee 736 SUPERFAMILY SSF140356 50 154 9.16E-37 T 31-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 Y89_2843 44a5b11ac20873ad8efa803be349c6ee 186 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 6 177 4.7E-79 T 31-10-2018 IPR019912 FMN reductase, MsuE-like Y89_2843 44a5b11ac20873ad8efa803be349c6ee 186 SUPERFAMILY SSF52218 1 176 4.35E-34 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_2843 44a5b11ac20873ad8efa803be349c6ee 186 Pfam PF03358 NADPH-dependent FMN reductase 6 150 9.3E-30 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y89_2843 44a5b11ac20873ad8efa803be349c6ee 186 Gene3D G3DSA:3.40.50.360 4 175 1.1E-42 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 132 172 1.1E-15 T 31-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Gene3D G3DSA:3.30.60.70 132 172 9.4E-23 T 31-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 4 341 44.255 T 31-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Gene3D G3DSA:3.30.70.2010 1 131 3.9E-55 T 31-10-2018 Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 254 286 3.8E-12 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 SUPERFAMILY SSF51161 101 306 3.33E-37 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 344 6.3E-187 T 31-10-2018 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 Y89_1360 d7e2d0f8b36b1a4bc524e0b73b2a9e29 344 Gene3D G3DSA:2.160.10.10 173 344 4.0E-72 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.2090.10 181 277 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.70.1440 673 870 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:1.20.1640.10 517 1027 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Pfam PF00873 AcrB/AcrD/AcrF family 4 1031 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.9E-84 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82693 676 861 9.94E-27 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82866 835 1030 1.7E-43 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82714 185 273 3.27E-18 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82693 569 675 7.15E-25 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82693 137 332 4.45E-25 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.70.1430 40 821 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82866 298 499 5.75E-51 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:1.20.1640.10 10 516 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1039 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.70.1430 571 672 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 Gene3D G3DSA:3.30.70.1320 135 334 0.0 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82693 40 134 1.15E-27 T 31-10-2018 Y89_1505 31da541b7bf2add8fcac2d794159f291 1053 SUPERFAMILY SSF82714 726 811 4.71E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 Gene3D G3DSA:1.10.10.10 123 218 1.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 SMART SM00448 1 112 2.1E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 1.3E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 SMART SM00862 145 216 4.4E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 Gene3D G3DSA:3.40.50.2300 1 121 2.5E-35 T 31-10-2018 Y89_2722 4f0a98bb7d07a46ffc321ef53a3f5db9 226 SUPERFAMILY SSF52172 1 172 1.96E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3481 9d5e11061eef9fa51150a45e20f70836 762 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 79 761 1.8E-288 T 31-10-2018 IPR010706 Fatty acid cis-trans isomerase Y89_1268 407400c4019253e6b255e4ad9aca9de0 340 Pfam PF01380 SIS domain 43 156 3.9E-13 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_1268 407400c4019253e6b255e4ad9aca9de0 340 Pfam PF01380 SIS domain 198 281 5.7E-16 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_1268 407400c4019253e6b255e4ad9aca9de0 340 SUPERFAMILY SSF53697 5 338 1.36E-65 T 31-10-2018 Y89_1268 407400c4019253e6b255e4ad9aca9de0 340 Gene3D G3DSA:3.40.50.10490 194 325 3.1E-43 T 31-10-2018 Y89_1268 407400c4019253e6b255e4ad9aca9de0 340 Gene3D G3DSA:3.40.50.10490 1 189 1.9E-35 T 31-10-2018 Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 7.2E-43 T 31-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 SMART SM01003 4 136 7.4E-69 T 31-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 SMART SM01002 145 314 7.9E-85 T 31-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 SUPERFAMILY SSF51735 136 317 2.69E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 Gene3D G3DSA:3.40.50.720 3 366 1.4E-141 T 31-10-2018 Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 369 1.9E-73 T 31-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 Gene3D G3DSA:3.40.50.720 136 321 1.4E-141 T 31-10-2018 Y89_0207 ec66f37672e7e745397fd116ae8a6e35 372 SUPERFAMILY SSF52283 2 167 4.0E-51 T 31-10-2018 Y89_5523 ef9211fc87502928495868c503f3b871 535 SMART SM00798 140 467 1.8E-206 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 PIRSF PIRSF000414 4 535 3.5E-216 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 10 535 44.702 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 SMART SM00851 22 135 2.6E-59 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain Y89_5523 ef9211fc87502928495868c503f3b871 535 SUPERFAMILY SSF52335 10 197 4.45E-70 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Y89_5523 ef9211fc87502928495868c503f3b871 535 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 11 535 2.1E-234 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.50.1380 1 201 7.7E-86 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Y89_5523 ef9211fc87502928495868c503f3b871 535 Pfam PF01808 AICARFT/IMPCHase bienzyme 140 466 6.7E-115 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 SUPERFAMILY SSF53927 222 535 1.0E-127 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_5523 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.140.20 398 535 1.4E-60 T 31-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_5523 ef9211fc87502928495868c503f3b871 535 Pfam PF02142 MGS-like domain 22 135 1.8E-27 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain Y89_5523 ef9211fc87502928495868c503f3b871 535 Gene3D G3DSA:3.40.140.20 220 377 1.8E-52 T 31-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SUPERFAMILY SSF55073 172 306 3.77E-9 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SMART SM00267 152 324 6.3E-4 T 31-10-2018 IPR000160 GGDEF domain Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 167 295 4.3E-6 T 31-10-2018 IPR000160 GGDEF domain Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SUPERFAMILY SSF55781 28 164 5.1E-24 T 31-10-2018 Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SUPERFAMILY SSF141868 349 586 3.01E-80 T 31-10-2018 IPR035919 EAL domain superfamily Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SMART SM00065 26 169 0.0024 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Gene3D G3DSA:3.30.70.270 167 338 6.3E-67 T 31-10-2018 Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 SMART SM00052 334 580 7.6E-96 T 31-10-2018 IPR001633 EAL domain Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Pfam PF01590 GAF domain 28 157 1.1E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Gene3D G3DSA:3.30.450.40 22 166 4.4E-17 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Gene3D G3DSA:3.20.20.450 339 587 9.4E-88 T 31-10-2018 IPR035919 EAL domain superfamily Y89_2620 1b0cbfcb6d6b256539ad2a583a3eb38a 587 Pfam PF00563 EAL domain 341 575 1.9E-69 T 31-10-2018 IPR001633 EAL domain Y89_1308 47a1a5105382046d7f715218f2bdf239 413 Gene3D G3DSA:1.20.1250.20 14 193 6.6E-24 T 31-10-2018 Y89_1308 47a1a5105382046d7f715218f2bdf239 413 Gene3D G3DSA:1.20.1250.20 207 396 3.9E-18 T 31-10-2018 Y89_1308 47a1a5105382046d7f715218f2bdf239 413 SUPERFAMILY SSF103473 10 395 8.24E-49 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1308 47a1a5105382046d7f715218f2bdf239 413 Pfam PF07690 Major Facilitator Superfamily 25 334 1.1E-28 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:2.10.70.100 498 544 1.0E-12 T 31-10-2018 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF08448 PAS fold 563 675 1.1E-11 T 31-10-2018 IPR013656 PAS fold-4 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:3.30.450.20 563 672 4.6E-21 T 31-10-2018 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:3.30.450.20 428 496 1.7E-16 T 31-10-2018 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SUPERFAMILY SSF55785 435 544 1.31E-16 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00052 858 1105 1.3E-77 T 31-10-2018 IPR001633 EAL domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SUPERFAMILY SSF55785 539 668 1.92E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:3.30.70.270 674 845 5.5E-56 T 31-10-2018 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 683 845 6.0E-42 T 31-10-2018 IPR000160 GGDEF domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF13426 PAS domain 312 412 1.9E-10 T 31-10-2018 IPR000014 PAS domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00267 674 846 1.3E-58 T 31-10-2018 IPR000160 GGDEF domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SUPERFAMILY SSF141868 865 1112 1.44E-74 T 31-10-2018 IPR035919 EAL domain superfamily Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:3.20.20.450 846 1107 1.7E-80 T 31-10-2018 IPR035919 EAL domain superfamily Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 421 4.1E-26 T 31-10-2018 IPR000014 PAS domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 552 681 8.2E-10 T 31-10-2018 IPR000014 PAS domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00086 373 415 1.6E-6 T 31-10-2018 IPR001610 PAC motif Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00086 501 543 2.3E-8 T 31-10-2018 IPR001610 PAC motif Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00086 632 674 120.0 T 31-10-2018 IPR001610 PAC motif Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF08447 PAS fold 450 537 4.5E-17 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF00563 EAL domain 866 1100 6.4E-64 T 31-10-2018 IPR001633 EAL domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SUPERFAMILY SSF55073 690 846 3.14E-47 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SUPERFAMILY SSF55785 307 418 1.45E-20 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Gene3D G3DSA:3.30.450.20 305 427 1.5E-21 T 31-10-2018 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF00990 Diguanylate cyclase, GGDEF domain 685 842 8.5E-43 T 31-10-2018 IPR000160 GGDEF domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 Pfam PF05231 MASE1 16 289 1.4E-17 T 31-10-2018 IPR007895 MASE1 Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00091 555 624 1.1E-6 T 31-10-2018 IPR000014 PAS domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00091 300 366 7.2E-6 T 31-10-2018 IPR000014 PAS domain Y89_4172 1340a9ae4b1494842f58b743449f25bc 1120 SMART SM00091 427 495 5.2 T 31-10-2018 IPR000014 PAS domain Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 Pfam PF03466 LysR substrate binding domain 91 298 5.6E-36 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 3.4E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:1.10.10.10 6 92 5.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:3.40.190.10 94 296 1.7E-53 T 31-10-2018 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 SUPERFAMILY SSF53850 92 300 1.71E-37 T 31-10-2018 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 Gene3D G3DSA:3.40.190.10 167 270 1.7E-53 T 31-10-2018 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 SUPERFAMILY SSF46785 8 115 1.36E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 8.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 8.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4022 107c28fdf0f452f0ba10db20b7e72956 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 8.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2676 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF63380 76 204 4.77E-23 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_2676 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF54292 1 98 1.97E-25 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Pfam PF00970 Oxidoreductase FAD-binding domain 109 202 1.4E-16 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_2676 50884b91d844c92511462fce25c5ec42 337 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Pfam PF00175 Oxidoreductase NAD-binding domain 212 314 1.9E-22 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:3.40.50.80 200 332 1.5E-35 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 5.4E-8 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 236 245 5.4E-8 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 5.4E-8 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 5.4E-8 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 4.5E-15 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 6.4E-25 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:2.40.30.10 101 199 2.0E-23 T 31-10-2018 Y89_2676 50884b91d844c92511462fce25c5ec42 337 Gene3D G3DSA:3.10.20.30 1 100 1.0E-27 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2676 50884b91d844c92511462fce25c5ec42 337 SUPERFAMILY SSF52343 204 333 3.67E-35 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 SUPERFAMILY SSF51735 2 248 4.42E-69 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.1E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.1E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.1E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 184 3.1E-4 T 31-10-2018 Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 Gene3D G3DSA:3.40.50.720 2 278 4.5E-84 T 31-10-2018 Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 Pfam PF00106 short chain dehydrogenase 4 190 2.7E-53 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2601 5c42fc5c2019351564e863bcd6abb15a 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 SUPERFAMILY SSF52540 148 390 1.74E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 Gene3D G3DSA:3.40.50.300 141 319 1.6E-67 T 31-10-2018 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 Gene3D G3DSA:3.40.50.2300 1 128 1.2E-30 T 31-10-2018 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 SMART SM00382 169 334 7.6E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 SMART SM00448 2 109 6.2E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 235 250 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 173 186 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 SUPERFAMILY SSF52172 1 194 3.98E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 Pfam PF00072 Response regulator receiver domain 4 109 2.1E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 Gene3D G3DSA:1.10.8.60 320 397 9.6E-22 T 31-10-2018 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 Pfam PF00158 Sigma-54 interaction domain 149 315 3.0E-73 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5339 ebd2e127f05389986b8dc2c6108cb362 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 362 371 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_0863 df436de628992cb39e7d59055c89c197 301 SUPERFAMILY SSF53807 29 287 6.28E-38 T 31-10-2018 Y89_0863 df436de628992cb39e7d59055c89c197 301 Pfam PF01497 Periplasmic binding protein 33 280 1.4E-41 T 31-10-2018 IPR002491 ABC transporter periplasmic binding domain Y89_0863 df436de628992cb39e7d59055c89c197 301 Gene3D G3DSA:3.40.50.1980 131 301 2.3E-58 T 31-10-2018 Y89_0863 df436de628992cb39e7d59055c89c197 301 Gene3D G3DSA:3.40.50.1980 24 130 1.3E-18 T 31-10-2018 Y89_4751 73b341994a1624734b7119fbe7041557 321 SUPERFAMILY SSF54523 43 320 3.14E-9 T 31-10-2018 Y89_4751 73b341994a1624734b7119fbe7041557 321 SUPERFAMILY SSF47781 218 272 3.78E-6 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_4751 73b341994a1624734b7119fbe7041557 321 PIRSF PIRSF002786 1 321 8.3E-92 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y89_4751 73b341994a1624734b7119fbe7041557 321 SUPERFAMILY SSF158544 104 218 4.71E-7 T 31-10-2018 IPR038072 GspK, central domain superfamily Y89_4751 73b341994a1624734b7119fbe7041557 321 Pfam PF03934 Type II secretion system (T2SS), protein K 31 313 1.7E-66 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 Pfam PF00120 Glutamine synthetase, catalytic domain 121 454 1.8E-109 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 Gene3D G3DSA:3.10.20.70 12 122 1.3E-8 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 SUPERFAMILY SSF54368 14 119 3.27E-18 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 SUPERFAMILY SSF55931 122 456 1.57E-101 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 Gene3D G3DSA:3.30.590.10 123 458 8.4E-104 T 31-10-2018 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 257 272 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_0314 8554618fbdbd87a7da82997bf3cb4521 458 SMART SM01230 120 376 4.7E-96 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.230.70 1 229 6.2E-80 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 3.7E-22 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 1.2E-22 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.230.70 233 550 3.6E-115 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:3.30.1370.10 551 622 1.3E-21 T 31-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 692 0.0 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SMART SM00316 621 691 8.9E-25 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF50249 615 693 1.94E-22 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF00575 S1 RNA binding domain 620 691 3.8E-18 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03725 3' exoribonuclease family, domain 2 460 529 9.2E-6 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03725 3' exoribonuclease family, domain 2 146 210 4.4E-11 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54791 556 641 7.01E-24 T 31-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 8.2E-23 T 31-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 694 30.536 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Gene3D G3DSA:2.40.50.140 623 694 3.3E-29 T 31-10-2018 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SMART SM00322 553 618 2.4E-13 T 31-10-2018 IPR004087 K Homology domain GO:0003676 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 Pfam PF00013 KH domain 558 613 2.6E-12 T 31-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54211 3 143 4.0E-50 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF55666 451 550 4.49E-29 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 PIRSF PIRSF005499 1 700 4.9E-294 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF55666 144 235 8.41E-27 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_5353 95f3b645db0618eee5516e3ff1ae6931 701 SUPERFAMILY SSF54211 293 489 1.92E-49 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 Pfam PF05860 haemagglutination activity domain 134 249 1.7E-21 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 Gene3D G3DSA:2.160.20.10 777 1043 1.4E-6 T 31-10-2018 IPR012334 Pectin lyase fold Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 Gene3D G3DSA:2.160.20.10 131 420 5.6E-53 T 31-10-2018 IPR012334 Pectin lyase fold Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 SUPERFAMILY SSF51126 826 980 2.54E-5 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 3968 4077 6.9E-41 T 31-10-2018 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 SUPERFAMILY SSF51126 142 497 9.73E-37 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 SMART SM00912 133 249 8.3E-30 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_4744 90b49a26ae73410dbdd94332a3dc239c 4177 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 170 245 1.5E-21 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_3730 033422026b6f99806f46956267733704 298 SUPERFAMILY SSF51556 3 288 3.26E-22 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_3730 033422026b6f99806f46956267733704 298 Gene3D G3DSA:3.20.20.140 1 291 8.4E-31 T 31-10-2018 Y89_3730 033422026b6f99806f46956267733704 298 Pfam PF04909 Amidohydrolase 120 288 4.2E-12 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 SUPERFAMILY SSF51971 343 527 1.65E-40 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 SUPERFAMILY SSF51905 479 636 3.24E-16 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 Gene3D G3DSA:3.40.50.720 385 674 4.1E-110 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 Gene3D G3DSA:3.20.20.70 12 379 8.2E-117 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 386 408 1.3E-5 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 628 642 1.3E-5 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 16 340 9.6E-71 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 507 525 1.1E-11 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 627 643 1.1E-11 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 387 406 1.1E-11 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 385 644 2.7E-22 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 SUPERFAMILY SSF51395 11 372 2.25E-107 T 31-10-2018 Y89_5427 903ddcd961bb712c774edd02dbf42ab6 681 Gene3D G3DSA:3.50.50.60 480 634 4.1E-110 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SMART SM00271 4 62 5.7E-33 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 25 40 1.7E-33 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 42 62 1.7E-33 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 62 81 1.7E-33 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 PRINTS PR00625 DnaJ domain signature 7 25 1.7E-33 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:2.60.260.20 258 364 4.4E-30 T 31-10-2018 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 31-10-2018 IPR018253 DnaJ domain, conserved site Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF00226 DnaJ domain 5 67 4.3E-28 T 31-10-2018 IPR001623 DnaJ domain Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF01556 DnaJ C terminal domain 123 335 2.6E-44 T 31-10-2018 IPR002939 Chaperone DnaJ, C-terminal Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:1.10.287.110 1 113 1.4E-37 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF46565 1 111 2.88E-36 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF57938 136 213 3.79E-22 T 31-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 3.1E-140 T 31-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.81 T 31-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Pfam PF00684 DnaJ central domain 149 209 4.1E-14 T 31-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF49493 116 269 6.8E-21 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 SUPERFAMILY SSF49493 261 346 3.01E-22 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Y89_5372 8f9c33742bfb4bbd194ba1b92e9f1e90 377 Gene3D G3DSA:2.10.230.10 149 213 1.3E-21 T 31-10-2018 Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 SMART SM00670 13 147 4.8E-10 T 31-10-2018 IPR002716 PIN domain Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 SUPERFAMILY SSF88723 12 161 5.3E-17 T 31-10-2018 IPR029060 PIN-like domain superfamily Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 Gene3D G3DSA:3.40.50.300 252 461 1.7E-59 T 31-10-2018 Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 Gene3D G3DSA:3.40.50.1010 9 162 9.1E-28 T 31-10-2018 Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 Pfam PF13638 PIN domain 15 160 2.0E-39 T 31-10-2018 IPR002716 PIN domain Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 Pfam PF02562 PhoH-like protein 254 450 1.4E-45 T 31-10-2018 IPR003714 PhoH-like protein GO:0005524 Y89_1104 72b0df25d83be0d54229160c6b9192a5 463 SUPERFAMILY SSF52540 207 442 1.19E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 SUPERFAMILY SSF89963 87 159 4.45E-29 T 31-10-2018 IPR036183 YajQ-like superfamily Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 Pfam PF04461 Protein of unknown function (DUF520) 2 158 1.0E-61 T 31-10-2018 IPR007551 Protein of unknown function DUF520 Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 Gene3D G3DSA:3.30.70.990 9 92 1.6E-23 T 31-10-2018 IPR035570 UPF0234, N-terminal Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 Gene3D G3DSA:3.30.70.860 93 159 1.4E-30 T 31-10-2018 IPR035571 UPF0234-like, C-terminal Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 SUPERFAMILY SSF89963 2 85 1.22E-26 T 31-10-2018 IPR036183 YajQ-like superfamily Y89_4884 5860754cd9c75ce4d036141cdaccdb01 159 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 159 29.074 T 31-10-2018 IPR007551 Protein of unknown function DUF520 Y89_0878 96c026a811e28e69dc3b2531c1df5f6c 471 Gene3D G3DSA:1.20.1600.10 57 469 8.3E-87 T 31-10-2018 Y89_0878 96c026a811e28e69dc3b2531c1df5f6c 471 SUPERFAMILY SSF56954 50 465 4.05E-83 T 31-10-2018 Y89_0878 96c026a811e28e69dc3b2531c1df5f6c 471 Pfam PF02321 Outer membrane efflux protein 58 241 1.0E-26 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0878 96c026a811e28e69dc3b2531c1df5f6c 471 Pfam PF02321 Outer membrane efflux protein 276 463 2.1E-25 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0878 96c026a811e28e69dc3b2531c1df5f6c 471 PIRSF PIRSF001892 1 471 1.1E-165 T 31-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 Y89_3879 607fccb33f2be39f46b089789caf1b90 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 105 219 3.1E-25 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 266 657 1.5E-118 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 SUPERFAMILY SSF52777 824 977 4.11E-18 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Pfam PF00501 AMP-binding enzyme 245 633 2.5E-87 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Gene3D G3DSA:3.30.559.30 997 1232 1.7E-64 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 ProSitePatterns PS00455 Putative AMP-binding domain signature. 385 396 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Pfam PF13193 AMP-binding enzyme C-terminal domain 642 715 6.7E-9 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 SUPERFAMILY SSF56801 208 752 1.31E-141 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Gene3D G3DSA:3.30.559.10 824 1184 1.7E-64 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 ProSitePatterns PS00012 Phosphopantetheine attachment site. 763 778 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Pfam PF00550 Phosphopantetheine attachment site 742 804 3.3E-6 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 SUPERFAMILY SSF52777 1004 1236 1.06E-31 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Gene3D G3DSA:3.30.300.30 629 725 2.5E-28 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Gene3D G3DSA:3.40.50.12780 233 628 5.2E-123 T 31-10-2018 Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 SUPERFAMILY SSF47336 735 823 1.44E-8 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Gene3D G3DSA:1.10.1200.10 726 811 1.0E-11 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2949 da7e7075c754ce32a6731f6da48153c8 1249 Pfam PF00668 Condensation domain 823 1150 1.0E-33 T 31-10-2018 IPR001242 Condensation domain Y89_4666 f5c34d7a06e0d8cf50de69b80a023374 77 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 2 77 7.7E-32 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_4666 f5c34d7a06e0d8cf50de69b80a023374 77 Pfam PF11660 Protein of unknown function (DUF3262) 1 76 5.8E-26 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_1110 4192bdf9077fe620f1b01b62f8b347da 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 31-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y89_1110 4192bdf9077fe620f1b01b62f8b347da 331 Pfam PF01136 Peptidase family U32 75 330 2.9E-63 T 31-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 257 341 1.9E-8 T 31-10-2018 IPR023885 4Fe4S-binding SPASM domain Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 22 33 - T 31-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF13353 4Fe-4S single cluster domain 23 106 2.4E-6 T 31-10-2018 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 Gene3D G3DSA:3.20.20.70 17 301 2.5E-47 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 PIRSF PIRSF037420 2 361 6.4E-128 T 31-10-2018 IPR017200 Coenzyme PQQ synthesis protein E Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 SMART SM00729 16 219 8.5E-5 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 SUPERFAMILY SSF102114 14 323 7.46E-76 T 31-10-2018 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 381 197.953 T 31-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 11 371 5.5E-189 T 31-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF13186 Iron-sulfur cluster-binding domain 249 314 1.0E-7 T 31-10-2018 IPR023885 4Fe4S-binding SPASM domain Y89_3334 74ae3cde34b21aa090ee3a5d5b007dd1 381 Pfam PF04055 Radical SAM superfamily 22 177 1.4E-22 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 Gene3D G3DSA:3.40.190.10 170 274 1.8E-49 T 31-10-2018 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 Pfam PF03466 LysR substrate binding domain 93 301 8.7E-46 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 SUPERFAMILY SSF53850 94 302 6.88E-42 T 31-10-2018 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.6E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 Gene3D G3DSA:1.10.10.10 8 88 2.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.9E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.9E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.9E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 SUPERFAMILY SSF46785 7 117 4.47E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2542 21288bfe49c7f2ab51865d2d3fd0fa00 303 Gene3D G3DSA:3.40.190.10 97 293 1.8E-49 T 31-10-2018 Y89_3519 87016cd6735fd71ac28d9c91585f88b4 615 Gene3D G3DSA:3.10.105.10 313 571 8.4E-258 T 31-10-2018 Y89_3519 87016cd6735fd71ac28d9c91585f88b4 615 Gene3D G3DSA:3.40.190.10 29 591 8.4E-258 T 31-10-2018 Y89_3519 87016cd6735fd71ac28d9c91585f88b4 615 PIRSF PIRSF002741 17 596 1.9E-113 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_3519 87016cd6735fd71ac28d9c91585f88b4 615 SUPERFAMILY SSF53850 51 592 6.21E-128 T 31-10-2018 Y89_3519 87016cd6735fd71ac28d9c91585f88b4 615 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 508 2.9E-79 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_0741 9f5777366d839fc0d87c559621a32a93 399 Pfam PF00579 tRNA synthetases class I (W and Y) 31 315 8.9E-81 T 31-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 Gene3D G3DSA:1.10.240.10 218 326 3.2E-32 T 31-10-2018 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 SUPERFAMILY SSF52374 4 310 2.43E-99 T 31-10-2018 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 Gene3D G3DSA:3.40.50.620 4 217 5.5E-78 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_0741 9f5777366d839fc0d87c559621a32a93 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 396 48.202 T 31-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 Gene3D G3DSA:3.10.290.10 327 396 1.6E-9 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 396 1.5E-119 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 SUPERFAMILY SSF55174 320 396 9.68E-14 T 31-10-2018 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 2.2E-26 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 2.2E-26 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 2.2E-26 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_0741 9f5777366d839fc0d87c559621a32a93 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 2.2E-26 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 SMART SM00448 2 113 2.6E-10 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 SMART SM01012 129 184 2.3E-19 T 31-10-2018 IPR005561 ANTAR domain GO:0003723 Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 PIRSF PIRSF036382 1 191 2.0E-66 T 31-10-2018 IPR008327 Signal transduction response regulator, antiterminator Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 Gene3D G3DSA:1.10.10.10 133 189 2.8E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 Pfam PF00072 Response regulator receiver domain 4 110 4.8E-9 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 Gene3D G3DSA:3.40.50.2300 1 130 4.1E-16 T 31-10-2018 Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 SUPERFAMILY SSF52172 1 184 1.57E-45 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3547 6dc076ee8ead2c86dfef4f876fdecaee 192 Pfam PF03861 ANTAR domain 133 184 1.5E-16 T 31-10-2018 IPR005561 ANTAR domain GO:0003723 Y89_5194 f36272239e593249e682f5902332e92e 346 Gene3D G3DSA:1.10.760.10 188 325 1.1E-117 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5194 f36272239e593249e682f5902332e92e 346 Pfam PF00034 Cytochrome c 209 322 9.2E-10 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5194 f36272239e593249e682f5902332e92e 346 Pfam PF03150 Di-haem cytochrome c peroxidase 53 201 5.4E-51 T 31-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 Y89_5194 f36272239e593249e682f5902332e92e 346 PIRSF PIRSF000294 1 346 2.3E-158 T 31-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 Y89_5194 f36272239e593249e682f5902332e92e 346 Gene3D G3DSA:1.10.760.10 48 327 1.1E-117 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5194 f36272239e593249e682f5902332e92e 346 SUPERFAMILY SSF46626 188 344 7.28E-44 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5194 f36272239e593249e682f5902332e92e 346 SUPERFAMILY SSF46626 31 189 2.0E-51 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 374 5.5E-112 T 31-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 Pfam PF07687 Peptidase dimerisation domain 175 284 2.1E-26 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 SUPERFAMILY SSF53187 6 378 4.0E-52 T 31-10-2018 Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 SUPERFAMILY SSF55031 177 291 2.69E-22 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 Gene3D G3DSA:3.40.630.10 17 363 5.8E-81 T 31-10-2018 Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 Gene3D G3DSA:3.30.70.360 177 292 5.8E-81 T 31-10-2018 Y89_5893 5e017e4068ce36d1605ab53993c672c2 384 Pfam PF01546 Peptidase family M20/M25/M40 73 375 7.2E-32 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_1261 2a01c85ab3bbb1971361950b3c2ce317 418 PIRSF PIRSF006060 10 418 4.4E-11 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_1261 2a01c85ab3bbb1971361950b3c2ce317 418 Gene3D G3DSA:1.20.1740.10 23 416 1.4E-12 T 31-10-2018 Y89_1261 2a01c85ab3bbb1971361950b3c2ce317 418 Pfam PF03222 Tryptophan/tyrosine permease family 29 382 7.8E-29 T 31-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y89_3022 878a6d327efb39f4d07cbd0e71012ebf 303 Gene3D G3DSA:3.90.550.10 2 230 3.7E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3022 878a6d327efb39f4d07cbd0e71012ebf 303 Pfam PF13641 Glycosyltransferase like family 2 3 220 9.4E-14 T 31-10-2018 Y89_3022 878a6d327efb39f4d07cbd0e71012ebf 303 SUPERFAMILY SSF53448 5 219 8.44E-36 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF01590 GAF domain 17 152 3.3E-15 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF51621 427 715 1.05E-102 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF47831 204 316 7.45E-30 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF52009 300 420 6.93E-29 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 SUPERFAMILY SSF55781 2 158 2.4E-32 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.30.450.40 1 164 2.0E-50 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 620 638 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 179 736 1.1E-141 T 31-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 620 635 5.9E-24 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 673 685 5.9E-24 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 467 486 5.9E-24 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 637 652 5.9E-24 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:1.10.274.10 197 321 1.0E-63 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 SMART SM00065 17 164 4.5E-23 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF05524 PEP-utilising enzyme, N-terminal 180 301 2.7E-27 T 31-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 426 713 1.9E-98 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.20.20.60 408 745 3.6E-109 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Gene3D G3DSA:3.50.30.10 180 407 1.0E-63 T 31-10-2018 Y89_0358 1e583f1950c01f486bbd5fbcf353da35 759 Pfam PF00391 PEP-utilising enzyme, mobile domain 327 399 2.8E-16 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y89_5807 9c33f6ef3abec857e19dfeb82e633400 257 Pfam PF04748 Divergent polysaccharide deacetylase 35 241 2.2E-72 T 31-10-2018 IPR006837 Divergent polysaccharide deacetylase Y89_5807 9c33f6ef3abec857e19dfeb82e633400 257 Gene3D G3DSA:3.20.20.370 17 252 4.9E-78 T 31-10-2018 Y89_5807 9c33f6ef3abec857e19dfeb82e633400 257 SUPERFAMILY SSF88713 31 242 1.22E-65 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 Gene3D G3DSA:3.30.565.10 285 426 1.1E-26 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 SUPERFAMILY SSF55874 287 423 6.29E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00304 156 210 5.6E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00387 321 426 3.7E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 1.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 1.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 1.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 Gene3D G3DSA:1.10.287.130 160 278 3.0E-21 T 31-10-2018 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 SUPERFAMILY SSF47384 194 277 1.82E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 424 3.9E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 SMART SM00388 211 277 6.7E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4868 6c32b9043b2e1e4c1a075890708d68fe 426 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 276 1.2E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5313 92f3e68393dc858965b390dabab0acd1 520 Gene3D G3DSA:3.40.50.300 335 518 4.4E-31 T 31-10-2018 Y89_5313 92f3e68393dc858965b390dabab0acd1 520 Pfam PF01636 Phosphotransferase enzyme family 123 279 1.0E-5 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_5313 92f3e68393dc858965b390dabab0acd1 520 SUPERFAMILY SSF56112 12 294 4.96E-24 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5313 92f3e68393dc858965b390dabab0acd1 520 SUPERFAMILY SSF52540 339 516 4.72E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5313 92f3e68393dc858965b390dabab0acd1 520 Pfam PF13671 AAA domain 338 487 1.0E-37 T 31-10-2018 Y89_5313 92f3e68393dc858965b390dabab0acd1 520 Gene3D G3DSA:3.90.1200.10 121 322 4.5E-5 T 31-10-2018 Y89_5646 6818520878291142bc0bd8a3d0ad829c 393 Gene3D G3DSA:3.40.640.10 64 284 4.3E-120 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5646 6818520878291142bc0bd8a3d0ad829c 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y89_5646 6818520878291142bc0bd8a3d0ad829c 393 SUPERFAMILY SSF53383 15 383 1.22E-111 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5646 6818520878291142bc0bd8a3d0ad829c 393 Gene3D G3DSA:3.90.1150.10 29 381 4.3E-120 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5646 6818520878291142bc0bd8a3d0ad829c 393 Pfam PF00155 Aminotransferase class I and II 33 382 1.8E-71 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_0650 ba995d2ecf682c50e1c24b0e58bd431b 149 Pfam PF09424 Yqey-like protein 5 147 3.8E-49 T 31-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 Y89_0650 ba995d2ecf682c50e1c24b0e58bd431b 149 SUPERFAMILY SSF89095 4 148 1.26E-35 T 31-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Y89_0650 ba995d2ecf682c50e1c24b0e58bd431b 149 Gene3D G3DSA:1.10.1510.10 1 91 1.2E-20 T 31-10-2018 Y89_0650 ba995d2ecf682c50e1c24b0e58bd431b 149 Gene3D G3DSA:1.10.10.410 92 148 1.8E-15 T 31-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Y89_5070 ea1ec689595ee577f59145a28995e2dc 89 SUPERFAMILY SSF47598 11 52 1.11E-11 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_5070 ea1ec689595ee577f59145a28995e2dc 89 Pfam PF03869 Arc-like DNA binding domain 13 50 4.2E-15 T 31-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Y89_5070 ea1ec689595ee577f59145a28995e2dc 89 Gene3D G3DSA:1.10.1220.10 1 62 1.5E-20 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y89_1524 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF50249 570 676 2.03E-26 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1524 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:3.40.50.620 7 383 1.6E-152 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1524 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:2.20.28.20 141 175 1.6E-152 T 31-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_1524 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF57770 141 175 5.36E-12 T 31-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_1524 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF47323 389 547 1.4E-42 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1524 f395509365f45167133f9d76d41f308b 677 Pfam PF09334 tRNA synthetases class I (M) 7 395 4.0E-154 T 31-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 290 305 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 2.2E-24 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 5 545 39.351 T 31-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_1524 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:1.10.730.10 388 526 1.0E-31 T 31-10-2018 Y89_1524 f395509365f45167133f9d76d41f308b 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 543 677 1.9E-40 T 31-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 SUPERFAMILY SSF52374 4 386 1.15E-98 T 31-10-2018 Y89_1524 f395509365f45167133f9d76d41f308b 677 Gene3D G3DSA:2.40.50.140 565 677 5.1E-29 T 31-10-2018 Y89_1524 f395509365f45167133f9d76d41f308b 677 Pfam PF01588 Putative tRNA binding domain 581 674 4.4E-20 T 31-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y89_1524 f395509365f45167133f9d76d41f308b 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 535 2.3E-174 T 31-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Y89_1524 f395509365f45167133f9d76d41f308b 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 25 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_0524 00967f577ca36033a18955cde32662ef 274 SUPERFAMILY SSF53335 24 272 1.53E-42 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0524 00967f577ca36033a18955cde32662ef 274 Gene3D G3DSA:3.40.50.150 16 231 5.2E-36 T 31-10-2018 Y89_0524 00967f577ca36033a18955cde32662ef 274 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 18 272 32.094 T 31-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 Y89_0524 00967f577ca36033a18955cde32662ef 274 Pfam PF08241 Methyltransferase domain 62 155 2.1E-24 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_0524 00967f577ca36033a18955cde32662ef 274 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 26 272 1.1E-69 T 31-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 Gene3D G3DSA:3.40.50.300 211 469 1.7E-110 T 31-10-2018 Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 3 466 3.7E-216 T 31-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 SUPERFAMILY SSF160246 3 64 8.11E-7 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 SUPERFAMILY SSF52540 94 466 3.17E-101 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 Pfam PF00437 Type II/IV secretion system protein 114 377 1.5E-85 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 305 319 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 SMART SM00382 238 359 7.2E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4747 aa3d86ec1f388b198895b8669fe4445b 469 Gene3D G3DSA:3.30.450.90 75 210 5.1E-50 T 31-10-2018 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Pfam PF16921 Tex protein YqgF-like domain 330 455 3.7E-53 T 31-10-2018 IPR032639 Tex protein, YqgF-like domain Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Gene3D G3DSA:2.40.50.140 635 730 9.6E-31 T 31-10-2018 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SMART SM00732 329 428 4.2E-41 T 31-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Pfam PF09371 Tex-like protein N-terminal domain 20 197 1.4E-63 T 31-10-2018 IPR018974 Tex-like protein, N-terminal Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Pfam PF00575 S1 RNA binding domain 653 724 2.5E-20 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SUPERFAMILY SSF50249 642 729 1.72E-25 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Pfam PF12836 Helix-hairpin-helix motif 495 559 4.5E-29 T 31-10-2018 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Gene3D G3DSA:3.30.420.140 328 455 6.6E-161 T 31-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SMART SM00316 653 724 1.6E-24 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Gene3D G3DSA:1.10.10.650 1 114 1.4E-45 T 31-10-2018 IPR023319 Tex-like protein, HTH domain superfamily Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SUPERFAMILY SSF158832 4 324 1.83E-116 T 31-10-2018 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Gene3D G3DSA:1.10.150.310 503 634 2.7E-52 T 31-10-2018 Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SUPERFAMILY SSF47781 564 636 1.78E-20 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SUPERFAMILY SSF53098 325 473 4.32E-53 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 Gene3D G3DSA:1.10.3500.10 117 502 6.6E-161 T 31-10-2018 IPR023323 Tex-like domain superfamily Y89_5888 98814b64cbf1fba36152f36fa9a7dcfb 779 SUPERFAMILY SSF47781 474 560 4.45E-28 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 SMART SM00304 337 389 4.0E-14 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 SUPERFAMILY SSF81606 448 659 4.71E-6 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 SUPERFAMILY SSF158472 337 386 1.01E-9 T 31-10-2018 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 Gene3D G3DSA:1.20.1480.50 306 396 6.2E-14 T 31-10-2018 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 Pfam PF00672 HAMP domain 337 386 1.1E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 Gene3D G3DSA:3.60.40.10 404 661 4.3E-53 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 SMART SM00331 439 662 3.3E-9 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0184 63dddbc43a9d601c6d81f8361bc301c4 663 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 466 663 1.2E-24 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_1039 58f0a5558dacd35b0f635011e648773b 279 SMART SM00116 72 121 13.0 T 31-10-2018 IPR000644 CBS domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 SMART SM00116 136 184 0.64 T 31-10-2018 IPR000644 CBS domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 Pfam PF03471 Transporter associated domain 202 277 1.1E-20 T 31-10-2018 IPR005170 Transporter-associated domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 SUPERFAMILY SSF54631 60 198 1.64E-31 T 31-10-2018 Y89_1039 58f0a5558dacd35b0f635011e648773b 279 SMART SM01091 200 278 6.8E-30 T 31-10-2018 IPR005170 Transporter-associated domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 Gene3D G3DSA:3.30.465.10 197 279 2.3E-33 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_1039 58f0a5558dacd35b0f635011e648773b 279 Pfam PF00571 CBS domain 136 184 4.1E-5 T 31-10-2018 IPR000644 CBS domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 Pfam PF00571 CBS domain 63 120 0.0059 T 31-10-2018 IPR000644 CBS domain Y89_1039 58f0a5558dacd35b0f635011e648773b 279 Gene3D G3DSA:3.10.580.10 43 195 6.2E-52 T 31-10-2018 Y89_1039 58f0a5558dacd35b0f635011e648773b 279 SUPERFAMILY SSF56176 198 278 3.82E-22 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 PIRSF PIRSF028103 7 182 1.1E-66 T 31-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 Pfam PF13740 ACT domain 9 83 6.5E-14 T 31-10-2018 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 SUPERFAMILY SSF55021 7 87 9.96E-9 T 31-10-2018 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 Gene3D G3DSA:3.30.70.260 93 178 2.9E-10 T 31-10-2018 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 SUPERFAMILY SSF55021 95 181 7.67E-15 T 31-10-2018 Y89_4348 58f36bcf4490717120774659b82f8d9a 185 Gene3D G3DSA:3.30.70.260 7 90 4.3E-7 T 31-10-2018 Y89_0701 16240742b9fca92f0a211f1af4bc7ec3 68 Pfam PF05489 Phage Tail Protein X 4 61 7.0E-26 T 31-10-2018 IPR008861 Phage Tail Protein X-like Y89_0701 16240742b9fca92f0a211f1af4bc7ec3 68 Gene3D G3DSA:3.10.350.10 4 68 1.8E-18 T 31-10-2018 IPR036779 LysM domain superfamily Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 396 22.998 T 31-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Pfam PF11734 TilS substrate C-terminal domain 364 432 1.4E-16 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 SMART SM00977 364 432 2.1E-19 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 203 1.4E-51 T 31-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Pfam PF09179 TilS substrate binding domain 260 323 2.6E-13 T 31-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 364 409 2.1E-14 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Pfam PF01171 PP-loop family 23 199 2.0E-58 T 31-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 SUPERFAMILY SSF52402 17 232 3.09E-61 T 31-10-2018 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Gene3D G3DSA:1.20.59.20 242 326 4.9E-8 T 31-10-2018 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 SUPERFAMILY SSF82829 248 328 3.4E-17 T 31-10-2018 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 SUPERFAMILY SSF56037 337 434 1.15E-18 T 31-10-2018 Y89_1388 38a7b8f402d43f1ef0b2b150bf7da567 442 Gene3D G3DSA:3.40.50.620 15 233 7.7E-75 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Gene3D G3DSA:3.30.70.20 98 132 7.0E-6 T 31-10-2018 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 165 23.094 T 31-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Pfam PF14697 4Fe-4S dicluster domain 106 160 1.4E-17 T 31-10-2018 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Pfam PF04060 Putative Fe-S cluster 44 75 4.4E-14 T 31-10-2018 IPR007202 4Fe-4S domain GO:0051536 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Gene3D G3DSA:3.30.70.20 135 183 1.6E-7 T 31-10-2018 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 SUPERFAMILY SSF54862 40 172 2.14E-28 T 31-10-2018 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 PIRSF PIRSF005784 3 186 2.0E-84 T 31-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 Gene3D G3DSA:3.20.20.20 36 97 2.2E-12 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_1519 3af9ad26ae98cf80fc0a742aed7e4a82 188 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 187 7.0E-87 T 31-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 39 5.0E-7 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 31-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.389 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 Gene3D G3DSA:1.20.5.1150 16 54 2.0E-21 T 31-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 Pfam PF01165 Ribosomal protein S21 4 56 2.0E-22 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0651 464f0a183fbd7290eff9f75ab1766079 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 2.6E-25 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5937 62baf695bdfc83589bcac5dee3e38736 209 Pfam PF01810 LysE type translocator 16 203 7.9E-33 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_5937 62baf695bdfc83589bcac5dee3e38736 209 PIRSF PIRSF006324 1 206 1.6E-51 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_3652 840f5fa5c384e1f8ce5f1827acfeda8b 383 Pfam PF12832 MFS_1 like family 7 361 3.2E-85 T 31-10-2018 IPR024989 Major facilitator superfamily associated domain Y89_3652 840f5fa5c384e1f8ce5f1827acfeda8b 383 Gene3D G3DSA:1.20.1250.20 194 382 4.3E-41 T 31-10-2018 Y89_3652 840f5fa5c384e1f8ce5f1827acfeda8b 383 SUPERFAMILY SSF103473 7 379 1.57E-50 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3652 840f5fa5c384e1f8ce5f1827acfeda8b 383 PIRSF PIRSF004925 2 382 6.8E-108 T 31-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter Y89_3652 840f5fa5c384e1f8ce5f1827acfeda8b 383 Gene3D G3DSA:1.20.1250.20 4 188 1.7E-23 T 31-10-2018 Y89_5682 7de5807dfd4e06b4f077e6d58c7b42a8 373 SUPERFAMILY SSF53756 4 360 4.11E-60 T 31-10-2018 Y89_5682 7de5807dfd4e06b4f077e6d58c7b42a8 373 Gene3D G3DSA:3.40.50.2000 170 335 5.1E-108 T 31-10-2018 Y89_5682 7de5807dfd4e06b4f077e6d58c7b42a8 373 Pfam PF00534 Glycosyl transferases group 1 184 348 1.9E-32 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_5682 7de5807dfd4e06b4f077e6d58c7b42a8 373 Gene3D G3DSA:3.40.50.2000 12 169 5.1E-108 T 31-10-2018 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 SUPERFAMILY SSF56024 118 320 9.42E-51 T 31-10-2018 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Gene3D G3DSA:3.30.870.10 304 491 4.2E-30 T 31-10-2018 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Pfam PF13091 PLD-like domain 332 457 7.8E-28 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Pfam PF13091 PLD-like domain 150 290 5.2E-7 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Hamap MF_00190 Cardiolipin synthase A [clsA]. 14 491 45.894 T 31-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 26 491 4.0E-110 T 31-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 SMART SM00155 230 257 1.7E-4 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 SMART SM00155 404 431 3.1E-6 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Gene3D G3DSA:3.30.870.10 124 303 2.3E-43 T 31-10-2018 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 SUPERFAMILY SSF56024 282 470 5.16E-47 T 31-10-2018 Y89_6132 f670c9271fc8eb31314a0298dc2ab0b8 491 Pfam PF13396 Phospholipase_D-nuclease N-terminal 31 72 7.1E-5 T 31-10-2018 IPR027379 Cardiolipin synthase N-terminal Y89_2451 6ab86feb224a51179bda043ce2ef2b5a 137 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 26 123 1.0E-33 T 31-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2451 6ab86feb224a51179bda043ce2ef2b5a 137 Gene3D G3DSA:1.20.58.1610 2 124 6.1E-42 T 31-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2451 6ab86feb224a51179bda043ce2ef2b5a 137 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 20.119 T 31-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 190 1.1E-65 T 31-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 PIRSF PIRSF500135 1 436 2.2E-249 T 31-10-2018 IPR028358 GDP-mannose 6-dehydrogenase GO:0042121|GO:0047919 KEGG: 00051+1.1.1.132|KEGG: 00520+1.1.1.132|MetaCyc: PWY-6073|MetaCyc: PWY-6082 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF51735 1 195 2.91E-51 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF48179 204 300 7.48E-28 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 298 2.2E-28 T 31-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 410 3.2E-131 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:3.40.50.720 1 202 4.6E-68 T 31-10-2018 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:3.40.50.720 235 436 1.3E-76 T 31-10-2018 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 405 2.3E-12 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 Gene3D G3DSA:1.20.5.170 203 234 6.9E-20 T 31-10-2018 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 SUPERFAMILY SSF52413 305 434 2.62E-25 T 31-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 PIRSF PIRSF000124 1 436 1.1E-145 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_1487 0d850c5342cefa0f63a3bc0fdbab94e5 436 SMART SM00984 317 425 2.2E-19 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_2364 cc175d3784e0945f4cac1500da81d8e8 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 119 5.5E-47 T 31-10-2018 IPR028973 PhnB-like Y89_2364 cc175d3784e0945f4cac1500da81d8e8 159 SUPERFAMILY SSF54593 4 157 8.04E-49 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2364 cc175d3784e0945f4cac1500da81d8e8 159 Gene3D G3DSA:3.10.180.70 1 159 8.3E-65 T 31-10-2018 Y89_2364 cc175d3784e0945f4cac1500da81d8e8 159 PIRSF PIRSF021700 1 159 5.5E-69 T 31-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase Y89_1864 961bb6528b2325ba1039a8ef53089efd 232 Gene3D G3DSA:3.90.550.10 4 229 6.7E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1864 961bb6528b2325ba1039a8ef53089efd 232 SUPERFAMILY SSF53448 5 228 1.77E-51 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1864 961bb6528b2325ba1039a8ef53089efd 232 Pfam PF02348 Cytidylyltransferase 8 127 2.7E-20 T 31-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Y89_1857 f1ff0a407c7f884332c6b73ea6ca8327 326 Gene3D G3DSA:3.90.25.10 175 311 8.9E-90 T 31-10-2018 Y89_1857 f1ff0a407c7f884332c6b73ea6ca8327 326 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 306 2.5E-68 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_1857 f1ff0a407c7f884332c6b73ea6ca8327 326 Gene3D G3DSA:3.40.50.720 5 296 8.9E-90 T 31-10-2018 Y89_1857 f1ff0a407c7f884332c6b73ea6ca8327 326 TIGRFAM TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family 4 298 8.0E-157 T 31-10-2018 IPR026390 NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family Y89_1857 f1ff0a407c7f884332c6b73ea6ca8327 326 SUPERFAMILY SSF51735 1 317 7.14E-92 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 1.0E-37 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.9E-41 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:1.10.540.10 2 125 4.6E-48 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:2.40.110.10 126 238 1.1E-44 T 31-10-2018 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 SUPERFAMILY SSF56645 5 247 5.1E-87 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 SUPERFAMILY SSF47203 233 385 6.28E-46 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 5.9E-28 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 Gene3D G3DSA:1.20.140.10 239 383 1.1E-46 T 31-10-2018 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3308 3afe3ea853be6511fb1508cbefc0cee3 387 PIRSF PIRSF016578 12 387 9.5E-15 T 31-10-2018 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 34 477 5.5E-151 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 Gene3D G3DSA:1.20.210.10 13 530 1.9E-217 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 SUPERFAMILY SSF81442 23 529 6.54E-193 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 26 529 8.4E-212 T 31-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 254 308 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 343 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 142 154 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 25 50 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 99 123 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 201 220 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 375 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 404 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 72 95 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 435 456 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 252 273 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 190 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0117 cc5bee05f25a00c94538a6354be68929 530 PRINTS PR01165 Cytochrome c oxidase subunit I signature 298 313 1.3E-121 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 SMART SM00448 37 147 1.3E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 SUPERFAMILY SSF52172 36 214 3.62E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 Pfam PF00072 Response regulator receiver domain 39 147 7.4E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 39 254 1.4E-104 T 31-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 Pfam PF00486 Transcriptional regulatory protein, C terminal 180 254 1.3E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 SMART SM00862 180 255 4.9E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 Gene3D G3DSA:1.10.10.10 157 260 8.9E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5554 9fc819bd044c70b6df5ea8806ce2c2af 265 Gene3D G3DSA:3.40.50.2300 23 155 1.8E-39 T 31-10-2018 Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 SUPERFAMILY SSF55781 73 255 6.54E-26 T 31-10-2018 Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 SUPERFAMILY SSF46785 15 86 4.17E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 SMART SM00346 15 104 1.7E-12 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 Gene3D G3DSA:3.30.450.40 89 258 4.4E-24 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 Gene3D G3DSA:1.10.10.10 13 87 6.7E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 Pfam PF09339 IclR helix-turn-helix domain 17 65 1.4E-12 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_4342 5c1815706a85e176da0764fecb9cacf8 266 Pfam PF01614 Bacterial transcriptional regulator 134 253 3.2E-10 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_5580 5a148be6e30b256d65ebbb73ad16adce 290 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 262 283 1.1E-8 T 31-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y89_5580 5a148be6e30b256d65ebbb73ad16adce 290 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5580 5a148be6e30b256d65ebbb73ad16adce 290 SMART SM00382 30 261 8.5E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5580 5a148be6e30b256d65ebbb73ad16adce 290 Pfam PF00005 ABC transporter 21 211 7.0E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5580 5a148be6e30b256d65ebbb73ad16adce 290 SUPERFAMILY SSF52540 4 283 5.65E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 SMART SM00382 36 219 3.3E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 SUPERFAMILY SSF52540 10 249 2.18E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 Pfam PF08402 TOBE domain 286 363 4.2E-17 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 SUPERFAMILY SSF50331 244 363 3.63E-18 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 Gene3D G3DSA:2.40.50.100 289 326 1.6E-6 T 31-10-2018 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 Pfam PF00005 ABC transporter 28 169 7.4E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 Gene3D G3DSA:2.40.50.140 247 288 1.6E-6 T 31-10-2018 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 Gene3D G3DSA:3.40.50.300 6 246 1.4E-78 T 31-10-2018 Y89_0677 5e46a81fd242851d4484fe5d8b48d412 369 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 42 361 2.9E-115 T 31-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 414 493 1.4E-8 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:3.30.300.30 399 507 1.2E-19 T 31-10-2018 Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 Gene3D G3DSA:3.40.50.12780 10 397 1.3E-87 T 31-10-2018 Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 Pfam PF00501 AMP-binding enzyme 18 404 1.8E-72 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_4361 abfea31a144571f2de66aac3974cfc3e 517 SUPERFAMILY SSF56801 14 505 1.07E-111 T 31-10-2018 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF51735 1 150 9.86E-35 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02080 TrkA-C domain 389 450 1.6E-12 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02080 TrkA-C domain 156 221 2.6E-12 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.40.50.720 232 365 3.9E-35 T 31-10-2018 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.30.70.1450 139 231 6.2E-24 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF51735 231 375 1.84E-32 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.30.70.1450 366 457 2.4E-30 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF116726 361 436 1.83E-9 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 SUPERFAMILY SSF116726 135 221 1.15E-11 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Gene3D G3DSA:3.40.50.720 2 138 5.8E-47 T 31-10-2018 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02254 TrkA-N domain 3 105 1.4E-26 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 Pfam PF02254 TrkA-N domain 234 349 2.6E-23 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.7E-30 T 31-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.7E-30 T 31-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.7E-30 T 31-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.7E-30 T 31-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y89_0022 6a8e414e673ae77a47eb723d7d53e105 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.7E-30 T 31-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 1.9E-78 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 Pfam PF00210 Ferritin-like domain 8 143 5.5E-40 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PIRSF PIRSF002560 1 157 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 Gene3D G3DSA:1.20.1260.10 1 158 4.9E-71 T 31-10-2018 IPR012347 Ferritin-like Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.1E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_1496 13b861927c516157e7f8f2c1ecfdf488 158 SUPERFAMILY SSF47240 1 154 1.38E-53 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 91 186 1.7E-13 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 SUPERFAMILY SSF56784 5 203 1.09E-42 T 31-10-2018 IPR036412 HAD-like superfamily Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 187 2.2E-13 T 31-10-2018 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 9.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 9.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 9.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 9.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 180 193 9.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5863 1b462a0ffcee93ecd6f859c9f41fcea5 221 Gene3D G3DSA:3.40.50.1000 8 205 3.3E-28 T 31-10-2018 IPR023214 HAD superfamily Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 221 445 2.9E-50 T 31-10-2018 Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 Gene3D G3DSA:3.40.50.720 24 208 3.4E-51 T 31-10-2018 Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 344 372 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 284 295 2.3E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 337 345 2.3E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 357 376 2.3E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 SUPERFAMILY SSF51735 210 447 1.31E-60 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 215 388 5.0E-7 T 31-10-2018 Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 Gene3D G3DSA:3.40.50.720 210 450 2.4E-67 T 31-10-2018 Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 284 295 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 411 431 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 357 376 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 331 347 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 378 395 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5399 626fedb6a7c235ac57df6778c09b1f94 451 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 233 3.7E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4757 59bd22079acb328c6403f46b487eaefb 319 PIRSF PIRSF018266 5 318 3.6E-71 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_4757 59bd22079acb328c6403f46b487eaefb 319 Pfam PF04773 FecR protein 115 208 2.5E-14 T 31-10-2018 IPR006860 FecR protein Y89_4757 59bd22079acb328c6403f46b487eaefb 319 Gene3D G3DSA:2.60.120.1440 113 235 2.1E-10 T 31-10-2018 Y89_4757 59bd22079acb328c6403f46b487eaefb 319 Pfam PF16220 Domain of unknown function (DUF4880) 17 57 1.5E-11 T 31-10-2018 IPR032623 FecR, N-terminal Y89_0873 e263a93253ec29126d2ee79576d20d5f 346 PIRSF PIRSF018567 1 346 1.0E-166 T 31-10-2018 IPR011391 Acetoin catabolism kinase AcoX Y89_0873 e263a93253ec29126d2ee79576d20d5f 346 Gene3D G3DSA:3.40.50.10330 83 153 6.4E-6 T 31-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Y89_0873 e263a93253ec29126d2ee79576d20d5f 346 SUPERFAMILY SSF111331 92 146 6.8E-7 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Y89_0873 e263a93253ec29126d2ee79576d20d5f 346 Pfam PF01513 ATP-NAD kinase 8 232 1.1E-15 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y89_1321 ad8c9ef567bd7e7928137d91bee72126 229 Gene3D G3DSA:2.30.30.40 84 215 2.1E-15 T 31-10-2018 Y89_1321 ad8c9ef567bd7e7928137d91bee72126 229 Gene3D G3DSA:2.40.50.180 101 216 2.1E-15 T 31-10-2018 Y89_1321 ad8c9ef567bd7e7928137d91bee72126 229 SUPERFAMILY SSF50341 80 224 1.16E-21 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_1321 ad8c9ef567bd7e7928137d91bee72126 229 Pfam PF01584 CheW-like domain 83 223 1.8E-21 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1321 ad8c9ef567bd7e7928137d91bee72126 229 SMART SM00260 78 221 3.3E-5 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 SUPERFAMILY SSF51735 91 258 5.56E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Pfam PF11890 Domain of unknown function (DUF3410) 290 376 1.1E-22 T 31-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 SUPERFAMILY SSF52283 5 103 1.36E-15 T 31-10-2018 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Gene3D G3DSA:3.30.1370.170 293 380 1.1E-38 T 31-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 363 44.932 T 31-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 277 9.8E-15 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Gene3D G3DSA:3.40.50.720 2 275 1.4E-114 T 31-10-2018 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 256 3.9E-35 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_3979 3b96952e7dd2561ffa16270443df80d3 380 Gene3D G3DSA:3.40.50.720 92 257 1.4E-114 T 31-10-2018 Y89_2596 c97edeabeb28b5a679e2e5457a2703fd 266 Gene3D G3DSA:1.10.12.10 209 264 1.4E-18 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_2596 c97edeabeb28b5a679e2e5457a2703fd 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 265 2.6E-58 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2596 c97edeabeb28b5a679e2e5457a2703fd 266 Gene3D G3DSA:3.90.226.10 3 206 2.2E-64 T 31-10-2018 Y89_2596 c97edeabeb28b5a679e2e5457a2703fd 266 SUPERFAMILY SSF52096 2 264 5.86E-82 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1497 62b7e4add30efee3d1f783f2f85cd2e7 73 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 1.1E-11 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_1497 62b7e4add30efee3d1f783f2f85cd2e7 73 Gene3D G3DSA:1.10.10.1100 1 57 2.8E-25 T 31-10-2018 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 SUPERFAMILY SSF69864 175 400 1.96E-93 T 31-10-2018 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 Gene3D G3DSA:3.90.1260.10 178 403 2.0E-98 T 31-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 402 52.756 T 31-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 SUPERFAMILY SSF52402 5 209 3.31E-51 T 31-10-2018 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 Gene3D G3DSA:3.40.50.620 5 177 4.3E-69 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 Pfam PF00764 Arginosuccinate synthase 8 397 8.3E-155 T 31-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 31-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 399 1.8E-142 T 31-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_1502 8108f5a9a8743fd0dfffc94bdbfbc065 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 118 129 - T 31-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_5560 3564a27dc92f396c792951d945324b24 167 SMART SM00988 1 66 2.9E-24 T 31-10-2018 IPR004029 UreE urease accessory, N-terminal Y89_5560 3564a27dc92f396c792951d945324b24 167 Pfam PF05194 UreE urease accessory protein, C-terminal domain 73 150 4.2E-28 T 31-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 Y89_5560 3564a27dc92f396c792951d945324b24 167 Gene3D G3DSA:3.30.70.790 73 143 1.1E-29 T 31-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 Y89_5560 3564a27dc92f396c792951d945324b24 167 Gene3D G3DSA:2.60.260.20 1 71 3.5E-22 T 31-10-2018 Y89_5560 3564a27dc92f396c792951d945324b24 167 SUPERFAMILY SSF69737 73 139 6.02E-22 T 31-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 Y89_5560 3564a27dc92f396c792951d945324b24 167 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 24.25 T 31-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 Y89_5560 3564a27dc92f396c792951d945324b24 167 PIRSF PIRSF036402 1 151 6.5E-52 T 31-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 Y89_5560 3564a27dc92f396c792951d945324b24 167 SUPERFAMILY SSF69287 1 71 1.23E-16 T 31-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily Y89_5560 3564a27dc92f396c792951d945324b24 167 Pfam PF02814 UreE urease accessory protein, N-terminal domain 6 66 7.6E-21 T 31-10-2018 IPR004029 UreE urease accessory, N-terminal Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-75 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-75 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-75 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-75 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-75 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:3.50.7.10 192 372 5.4E-237 T 31-10-2018 IPR027409 GroEL-like apical domain superfamily Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 31-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 2.5E-254 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.565 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF52029 184 376 2.62E-83 T 31-10-2018 IPR027409 GroEL-like apical domain superfamily Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:3.30.260.10 136 410 5.4E-237 T 31-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF48592 7 521 4.28E-75 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 Gene3D G3DSA:1.10.560.10 8 521 5.4E-237 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 7.0E-94 T 31-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Y89_4874 87beb1e1996e1c4cd40de9f6725d007c 547 SUPERFAMILY SSF54849 137 203 3.43E-24 T 31-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:1.20.58.280 108 185 6.1E-44 T 31-10-2018 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 SMART SM00642 213 651 7.7E-5 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:3.20.20.80 205 567 2.3E-161 T 31-10-2018 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:2.60.40.1180 570 664 5.0E-22 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Pfam PF11896 Domain of unknown function (DUF3416) 21 203 2.5E-46 T 31-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Gene3D G3DSA:2.60.40.10 21 197 6.1E-44 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 18 661 47.399 T 31-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 Pfam PF00128 Alpha amylase, catalytic domain 227 332 4.2E-6 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3125 a331aa8c9ebb13041756becede7ac7a0 664 SUPERFAMILY SSF51445 199 565 6.09E-89 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 SUPERFAMILY SSF50341 16 156 5.75E-35 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 SUPERFAMILY SSF52172 179 303 1.71E-24 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 PIRSF PIRSF002867 1 308 1.4E-108 T 31-10-2018 IPR024181 Chemotaxis response regulator CheV Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 SMART SM00448 179 300 1.7E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 SMART SM00260 17 153 4.0E-20 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 Pfam PF01584 CheW-like domain 21 156 3.3E-34 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:3.40.50.2300 177 308 2.5E-25 T 31-10-2018 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:2.30.30.40 24 147 1.0E-28 T 31-10-2018 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 Gene3D G3DSA:2.40.50.180 39 153 1.0E-28 T 31-10-2018 Y89_1660 8d801bd2aecfb27fe95fdc8e176bea49 310 Pfam PF00072 Response regulator receiver domain 181 300 8.6E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4826 927a9e882bd95010e9b60d22837a786a 256 SUPERFAMILY SSF55781 85 255 1.41E-19 T 31-10-2018 Y89_4826 927a9e882bd95010e9b60d22837a786a 256 Gene3D G3DSA:3.30.450.40 83 253 9.2E-22 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_4826 927a9e882bd95010e9b60d22837a786a 256 Pfam PF09339 IclR helix-turn-helix domain 12 60 9.1E-15 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_4826 927a9e882bd95010e9b60d22837a786a 256 SUPERFAMILY SSF46785 10 70 3.61E-11 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4826 927a9e882bd95010e9b60d22837a786a 256 Gene3D G3DSA:1.10.10.10 2 69 1.5E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4826 927a9e882bd95010e9b60d22837a786a 256 SMART SM00346 10 99 2.5E-9 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 SUPERFAMILY SSF63848 157 262 1.96E-28 T 31-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Gene3D G3DSA:2.160.20.70 141 257 4.6E-29 T 31-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 12 263 1.7E-94 T 31-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 7 112 7.7E-30 T 31-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Gene3D G3DSA:3.30.750.120 7 122 3.1E-26 T 31-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 12 263 27.552 T 31-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Y89_1771 56fdd0a9bfda07bfa2d8a5cad43f120e 263 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 159 260 4.5E-29 T 31-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:3.40.50.2300 160 290 3.8E-87 T 31-10-2018 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 SMART SM00354 1 71 7.6E-32 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:3.40.50.2300 56 307 3.8E-87 T 31-10-2018 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.4E-16 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 31-10-2018 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 SUPERFAMILY SSF47413 1 59 2.38E-16 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 Pfam PF13377 Periplasmic binding protein-like domain 168 330 1.2E-41 T 31-10-2018 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 Gene3D G3DSA:1.10.260.40 3 55 1.4E-21 T 31-10-2018 Y89_3375 40f1b641b669af4b58987739a7fe62d7 337 SUPERFAMILY SSF53822 61 333 7.4E-90 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_4297 05dad254cb05ae22ea716fddeb88da4d 174 Pfam PF01899 Na+/H+ ion antiporter subunit 21 168 2.9E-43 T 31-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Y89_4297 05dad254cb05ae22ea716fddeb88da4d 174 PIRSF PIRSF019239 10 174 1.2E-42 T 31-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Y89_2034 1143fc16e5728edfa6202e79903355fd 414 Pfam PF02687 FtsX-like permease family 300 407 6.1E-15 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y89_2034 1143fc16e5728edfa6202e79903355fd 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 414 5.4E-156 T 31-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Y89_2034 1143fc16e5728edfa6202e79903355fd 414 Pfam PF12704 MacB-like periplasmic core domain 27 241 4.3E-18 T 31-10-2018 IPR025857 MacB-like periplasmic core domain Y89_0665 6364e8df9abbed0706845811b60e72eb 328 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 327 36.345 T 31-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 Y89_0665 6364e8df9abbed0706845811b60e72eb 328 Gene3D G3DSA:3.40.718.10 1 328 8.7E-135 T 31-10-2018 Y89_0665 6364e8df9abbed0706845811b60e72eb 328 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 324 2.2E-128 T 31-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Y89_0665 6364e8df9abbed0706845811b60e72eb 328 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 31 320 1.7E-109 T 31-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Y89_0665 6364e8df9abbed0706845811b60e72eb 328 SUPERFAMILY SSF53659 3 326 6.78E-113 T 31-10-2018 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 PIRSF PIRSF000106 44 418 6.3E-72 T 31-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 Gene3D G3DSA:3.40.50.720 160 418 1.1E-82 T 31-10-2018 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 SUPERFAMILY SSF53223 9 160 5.47E-51 T 31-10-2018 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 SMART SM00919 162 398 1.7E-143 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 ProSitePatterns PS00331 Malic enzymes signature. 158 174 - T 31-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 SUPERFAMILY SSF51735 162 412 2.22E-83 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 Pfam PF03949 Malic enzyme, NAD binding domain 164 354 3.5E-26 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 SMART SM01274 17 150 2.0E-76 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 Pfam PF00390 Malic enzyme, N-terminal domain 19 148 1.8E-25 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Y89_5718 3e0fbc529ebc18f0468e03668b32d940 422 Gene3D G3DSA:3.40.50.10380 1 159 2.2E-66 T 31-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 872 23.377 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 536 558 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 497 515 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 PRINTS PR00985 Leucyl-tRNA synthetase signature 569 579 6.8E-51 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Pfam PF08264 Anticodon-binding domain of tRNA 715 834 1.4E-14 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Gene3D G3DSA:3.10.20.590 811 873 4.5E-22 T 31-10-2018 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 631 665 3.9E-7 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 428 584 6.9E-8 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 872 0.0 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 413 8.4E-68 T 31-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 SUPERFAMILY SSF50677 226 424 1.26E-49 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Gene3D G3DSA:3.40.50.620 33 578 0.0 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Gene3D G3DSA:3.10.330.110 579 641 0.0 T 31-10-2018 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Gene3D G3DSA:1.10.730.10 9 804 0.0 T 31-10-2018 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Pfam PF09334 tRNA synthetases class I (M) 39 171 5.6E-19 T 31-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 Gene3D G3DSA:3.90.740.10 227 424 0.0 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 SUPERFAMILY SSF52374 5 681 9.21E-151 T 31-10-2018 Y89_1035 4dd453bdb4d90c61ba651f172b393f9b 873 SUPERFAMILY SSF47323 675 872 7.85E-34 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1123 00ca6106f25bdddf6b6f8de1efff3f73 317 Gene3D G3DSA:2.60.120.1440 102 229 2.5E-16 T 31-10-2018 Y89_1123 00ca6106f25bdddf6b6f8de1efff3f73 317 Pfam PF16220 Domain of unknown function (DUF4880) 15 57 7.8E-13 T 31-10-2018 IPR032623 FecR, N-terminal Y89_1123 00ca6106f25bdddf6b6f8de1efff3f73 317 PIRSF PIRSF018266 4 316 2.9E-94 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_1123 00ca6106f25bdddf6b6f8de1efff3f73 317 Pfam PF04773 FecR protein 113 204 2.2E-19 T 31-10-2018 IPR006860 FecR protein Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 SMART SM00304 381 435 1.2E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:3.30.450.20 73 237 8.1E-39 T 31-10-2018 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 495 678 6.3E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:1.10.287.950 382 712 1.2E-80 T 31-10-2018 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Gene3D G3DSA:3.30.450.20 64 339 8.1E-39 T 31-10-2018 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF02743 Cache domain 49 287 7.5E-16 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 Pfam PF00672 HAMP domain 383 431 3.0E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 SMART SM00283 450 711 1.3E-81 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5242 1b88c98e1f7c511d98cfe6d421635d15 712 SUPERFAMILY SSF58104 403 712 3.01E-82 T 31-10-2018 Y89_6191 842c4ccd30636d82797f0576e8611b08 421 SUPERFAMILY SSF52540 38 237 9.19E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6191 842c4ccd30636d82797f0576e8611b08 421 SMART SM00382 50 239 1.6E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6191 842c4ccd30636d82797f0576e8611b08 421 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6191 842c4ccd30636d82797f0576e8611b08 421 Pfam PF14524 Wzt C-terminal domain 260 398 2.0E-33 T 31-10-2018 IPR029439 Wzt, C-terminal Y89_6191 842c4ccd30636d82797f0576e8611b08 421 Gene3D G3DSA:3.40.50.300 27 259 7.1E-47 T 31-10-2018 Y89_6191 842c4ccd30636d82797f0576e8611b08 421 Gene3D G3DSA:2.70.50.60 260 395 6.0E-19 T 31-10-2018 Y89_6191 842c4ccd30636d82797f0576e8611b08 421 Pfam PF00005 ABC transporter 41 173 2.7E-20 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Gene3D G3DSA:2.60.40.2610 743 832 1.7E-26 T 31-10-2018 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Gene3D G3DSA:2.60.40.3110 339 428 2.9E-34 T 31-10-2018 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Pfam PF13953 PapC C-terminal domain 836 900 8.9E-19 T 31-10-2018 IPR025949 PapC-like, C-terminal domain Y89_0940 900cb7875a014dec6df762b8162a2b21 926 SUPERFAMILY SSF141729 99 227 1.7E-23 T 31-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Gene3D G3DSA:3.10.20.410 99 230 1.5E-22 T 31-10-2018 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Gene3D G3DSA:2.60.40.2070 835 924 1.3E-14 T 31-10-2018 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Pfam PF00577 Outer membrane usher protein 269 825 3.8E-155 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 Y89_0940 900cb7875a014dec6df762b8162a2b21 926 Pfam PF13954 PapC N-terminal domain 101 254 5.3E-36 T 31-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 Gene3D G3DSA:3.40.50.300 4 254 5.8E-63 T 31-10-2018 Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 4 250 1.2E-90 T 31-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 SMART SM00382 29 238 9.6E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 SUPERFAMILY SSF52540 4 242 1.66E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1625 f82272a2c3e4523eb0811a44e8988082 278 Pfam PF00005 ABC transporter 21 181 6.7E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3598 ae939ccde6b9b2fa955444aa7c084380 295 Pfam PF03547 Membrane transport protein 134 285 2.5E-14 T 31-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF51215 29 174 1.83E-29 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 SMART SM00342 205 288 6.2E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 Gene3D G3DSA:2.60.120.280 48 173 2.6E-10 T 31-10-2018 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 Gene3D G3DSA:1.10.10.60 186 292 1.4E-26 T 31-10-2018 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF46689 191 236 1.34E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 Pfam PF12833 Helix-turn-helix domain 211 289 1.3E-16 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 257 272 8.6E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 288 8.6E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 Pfam PF02311 AraC-like ligand binding domain 44 153 1.8E-20 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 SUPERFAMILY SSF46689 242 289 4.93E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4611 6dc476f89742711ed62fbe2baca5a382 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 Gene3D G3DSA:4.10.640.10 20 74 1.1E-27 T 31-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.5E-37 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 SUPERFAMILY SSF46911 3 74 2.62E-29 T 31-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.983 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 2.9E-18 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 2.9E-18 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 2.9E-18 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 2.9E-18 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 2.0E-22 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 Pfam PF01084 Ribosomal protein S18 19 68 3.1E-25 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5604 dbfded01c87925bee7d1bff9987c6438 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 31-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF02811 PHP domain 7 171 2.3E-41 T 31-10-2018 IPR004013 PHP domain GO:0003824 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1045 0.0 T 31-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 290 736 2.9E-176 T 31-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 SUPERFAMILY SSF89550 5 262 1.24E-14 T 31-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 SMART SM00481 6 73 2.8E-25 T 31-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:2.40.50.140 994 1087 5.8E-6 T 31-10-2018 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF14579 Helix-hairpin-helix motif 810 895 8.5E-26 T 31-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:1.10.10.1600 434 511 2.1E-27 T 31-10-2018 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Gene3D G3DSA:3.20.20.140 1 268 2.5E-93 T 31-10-2018 Y89_1386 4c997f9b40caaf134b7a8a8c44916c55 1173 Pfam PF01336 OB-fold nucleic acid binding domain 1009 1083 6.3E-10 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 SUPERFAMILY SSF55307 204 319 3.89E-42 T 31-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 Pfam PF12327 FtsZ family, C-terminal domain 222 316 7.1E-36 T 31-10-2018 IPR024757 Cell division protein FtsZ, C-terminal Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 98 118 3.9E-51 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 189 211 3.9E-51 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 212 233 3.9E-51 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 PRINTS PR00423 Cell division protein FtsZ signature 126 147 3.9E-51 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 4.1E-40 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 31-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 9 328 2.4E-127 T 31-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 SMART SM00864 13 205 1.9E-113 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 SMART SM00865 207 325 3.0E-57 T 31-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 366 37.72 T 31-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 Gene3D G3DSA:3.40.50.1440 10 317 2.8E-117 T 31-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 31-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Y89_4896 3977c0a004fafa5bd9467dedc2d4d6d6 394 SUPERFAMILY SSF52490 13 208 5.89E-69 T 31-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 Gene3D G3DSA:3.40.50.2300 3 131 6.3E-40 T 31-10-2018 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 SMART SM00448 11 122 6.9E-44 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 Gene3D G3DSA:1.10.10.10 136 244 1.5E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5887 9ea9dc4796be49889408ed925fba373f 247 SUPERFAMILY SSF46894 140 240 6.52E-26 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 Pfam PF00072 Response regulator receiver domain 13 123 3.8E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 SUPERFAMILY SSF52172 7 132 8.25E-43 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5887 9ea9dc4796be49889408ed925fba373f 247 SMART SM00862 161 238 1.2E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5887 9ea9dc4796be49889408ed925fba373f 247 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 238 3.5E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 Pfam PF00117 Glutamine amidotransferase class-I 197 372 9.9E-47 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.1E-11 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.1E-11 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.1E-11 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 SUPERFAMILY SSF52317 153 377 3.21E-62 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 Gene3D G3DSA:3.40.50.880 152 377 3.7E-75 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 Gene3D G3DSA:3.50.30.20 2 151 3.2E-57 T 31-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 SUPERFAMILY SSF52021 4 144 1.29E-55 T 31-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 SMART SM01097 3 133 5.7E-90 T 31-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 5.3E-39 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 5.3E-39 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 5.3E-39 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 5.3E-39 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 5.3E-39 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 47.531 T 31-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 8.3E-51 T 31-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 31-10-2018 Y89_5370 aea8f93c465ce2736611103eb5dabe2e 378 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 1.0E-142 T 31-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_2532 abafa345b990aac010db3318507992d1 307 SUPERFAMILY SSF50129 1 133 7.15E-18 T 31-10-2018 IPR011032 GroES-like superfamily Y89_2532 abafa345b990aac010db3318507992d1 307 Gene3D G3DSA:3.90.180.10 1 303 4.6E-45 T 31-10-2018 Y89_2532 abafa345b990aac010db3318507992d1 307 Pfam PF00107 Zinc-binding dehydrogenase 140 266 8.2E-20 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_2532 abafa345b990aac010db3318507992d1 307 SUPERFAMILY SSF51735 102 266 3.49E-28 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2532 abafa345b990aac010db3318507992d1 307 SMART SM00829 3 304 7.0E-6 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_6203 8e9e0bd4d506477208da1f46fe0ee617 97 Pfam PF09498 Protein of unknown function (DUF2388) 28 96 3.1E-31 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_6203 8e9e0bd4d506477208da1f46fe0ee617 97 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 97 1.1E-38 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 20 204 4.0E-5 T 31-10-2018 Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 SUPERFAMILY SSF51735 14 243 2.34E-67 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 21 38 1.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 1.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 1.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 1.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 Pfam PF00106 short chain dehydrogenase 20 207 8.3E-55 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5992 3dfa17737e69e4a7cf0ff55127f78a02 259 Gene3D G3DSA:3.40.50.720 11 257 3.7E-68 T 31-10-2018 Y89_1301 87eb9aee44cd2ed42f5c2456f7cf75a2 1746 Gene3D G3DSA:3.40.50.300 1285 1439 9.6E-12 T 31-10-2018 Y89_1301 87eb9aee44cd2ed42f5c2456f7cf75a2 1746 SUPERFAMILY SSF52540 1280 1437 4.97E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1301 87eb9aee44cd2ed42f5c2456f7cf75a2 1746 Pfam PF07728 AAA domain (dynein-related subfamily) 1292 1415 5.6E-5 T 31-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Y89_1301 87eb9aee44cd2ed42f5c2456f7cf75a2 1746 Pfam PF12458 ATPase involved in DNA repair 38 485 2.2E-199 T 31-10-2018 IPR020958 Domain of unknown function DUF3686 Y89_3380 86caf551f5e7854793d6e50829d49ebc 495 SUPERFAMILY SSF56059 277 484 3.91E-39 T 31-10-2018 Y89_3380 86caf551f5e7854793d6e50829d49ebc 495 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 177 6.7E-49 T 31-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain Y89_3380 86caf551f5e7854793d6e50829d49ebc 495 Gene3D G3DSA:3.30.470.20 371 486 1.3E-18 T 31-10-2018 Y89_3380 86caf551f5e7854793d6e50829d49ebc 495 Pfam PF08443 RimK-like ATP-grasp domain 286 463 1.1E-8 T 31-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y89_3380 86caf551f5e7854793d6e50829d49ebc 495 Gene3D G3DSA:3.30.1490.20 287 370 2.6E-8 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 64 266 2.0E-49 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 Gene3D G3DSA:2.170.230.10 154 215 2.5E-69 T 31-10-2018 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 216 235 5.4E-26 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 143 155 5.4E-26 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 95 5.4E-26 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00501 Signal peptidases I serine active site. 88 95 - T 31-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 SUPERFAMILY SSF51306 77 271 1.44E-64 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_4590 447f21352030e18c6febd8227e4c89cf 284 Pfam PF00717 Peptidase S24-like 85 168 9.9E-22 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y89_4590 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00761 Signal peptidases I signature 3. 221 234 - T 31-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 Gene3D G3DSA:2.10.109.10 77 266 2.5E-69 T 31-10-2018 Y89_4590 447f21352030e18c6febd8227e4c89cf 284 ProSitePatterns PS00760 Signal peptidases I lysine active site. 145 157 - T 31-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Y89_4466 e26a1ca480701655494f807bc7f98610 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 306 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4466 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF46689 263 314 1.16E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4466 e26a1ca480701655494f807bc7f98610 329 Gene3D G3DSA:1.10.10.60 207 315 3.1E-37 T 31-10-2018 Y89_4466 e26a1ca480701655494f807bc7f98610 329 Gene3D G3DSA:3.40.50.880 2 199 2.3E-32 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4466 e26a1ca480701655494f807bc7f98610 329 Pfam PF12833 Helix-turn-helix domain 233 311 7.1E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4466 e26a1ca480701655494f807bc7f98610 329 SMART SM00342 227 310 1.3E-33 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4466 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF46689 210 261 1.43E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4466 e26a1ca480701655494f807bc7f98610 329 SUPERFAMILY SSF52317 5 192 3.41E-24 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4466 e26a1ca480701655494f807bc7f98610 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 310 4.8E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4466 e26a1ca480701655494f807bc7f98610 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 294 4.8E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1839 f0e822f32857a1a9f46e5af806c6c2db 306 Pfam PF00990 Diguanylate cyclase, GGDEF domain 146 302 2.3E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_1839 f0e822f32857a1a9f46e5af806c6c2db 306 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 145 304 1.7E-49 T 31-10-2018 IPR000160 GGDEF domain Y89_1839 f0e822f32857a1a9f46e5af806c6c2db 306 Gene3D G3DSA:3.30.70.270 142 306 5.1E-55 T 31-10-2018 Y89_1839 f0e822f32857a1a9f46e5af806c6c2db 306 SMART SM00267 135 306 1.0E-57 T 31-10-2018 IPR000160 GGDEF domain Y89_1839 f0e822f32857a1a9f46e5af806c6c2db 306 SUPERFAMILY SSF55073 151 304 1.18E-47 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 SUPERFAMILY SSF75217 1 150 7.33E-47 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 Gene3D G3DSA:3.40.1280.10 1 153 6.1E-66 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 PIRSF PIRSF029256 1 153 7.9E-68 T 31-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 150 6.3E-58 T 31-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 Pfam PF00588 SpoU rRNA Methylase family 2 142 3.3E-32 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y89_5799 6b12e4963fd12fc260ec24c3d4f2f8bc 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.18 T 31-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 SUPERFAMILY SSF63380 11 153 2.87E-13 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 Gene3D G3DSA:2.40.30.10 17 149 1.5E-37 T 31-10-2018 Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 Gene3D G3DSA:3.40.50.80 162 256 2.2E-17 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 Gene3D G3DSA:3.40.50.80 258 317 5.5E-12 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 Pfam PF04954 Siderophore-interacting protein 166 313 1.4E-36 T 31-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain Y89_2798 d849dbcc043339b7f4005e5b1214178b 317 Pfam PF08021 Siderophore-interacting FAD-binding domain 34 149 8.3E-38 T 31-10-2018 IPR013113 FAD-binding 9, siderophore-interacting Y89_1923 cce9af6411620de80ca145b899fe883b 382 PIRSF PIRSF015761 35 382 2.8E-49 T 31-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 Y89_1923 cce9af6411620de80ca145b899fe883b 382 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 7 381 1.1E-107 T 31-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 Y89_1923 cce9af6411620de80ca145b899fe883b 382 SUPERFAMILY SSF53067 6 139 5.31E-26 T 31-10-2018 Y89_1923 cce9af6411620de80ca145b899fe883b 382 Gene3D G3DSA:3.30.420.380 17 161 6.5E-23 T 31-10-2018 Y89_1923 cce9af6411620de80ca145b899fe883b 382 Pfam PF05134 Type II secretion system (T2SS), protein L 7 222 5.4E-57 T 31-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain Y89_1923 cce9af6411620de80ca145b899fe883b 382 Pfam PF12693 GspL periplasmic domain 226 381 8.9E-46 T 31-10-2018 IPR025691 GspL periplasmic domain Y89_1923 cce9af6411620de80ca145b899fe883b 382 Gene3D G3DSA:3.30.1360.100 297 382 1.9E-16 T 31-10-2018 Y89_2336 2a43c1ab2da04ad1a6415cf64bc8b358 153 Pfam PF01402 Ribbon-helix-helix protein, copG family 10 41 7.1E-5 T 31-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Y89_2336 2a43c1ab2da04ad1a6415cf64bc8b358 153 SUPERFAMILY SSF47598 4 42 2.84E-6 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 SUPERFAMILY SSF52540 1 342 6.81E-35 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 Gene3D G3DSA:3.40.50.300 7 334 4.3E-84 T 31-10-2018 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 359 2.4E-115 T 31-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 ProSitePatterns PS00618 RecF protein signature 2. 300 318 - T 31-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 Gene3D G3DSA:1.20.1050.90 121 299 4.3E-84 T 31-10-2018 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 31-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 357 7.7E-33 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Y89_0003 12a71182b688681f7ed2e06e5a45048b 369 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 369 95.384 T 31-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Y89_5623 9d9d0ec2ecd9b318caaa03b1e325f89a 347 SUPERFAMILY SSF103088 171 277 1.16E-22 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_5623 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Gene3D G3DSA:3.30.1330.60 112 291 4.7E-53 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_5623 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Pfam PF00691 OmpA family 174 264 4.0E-14 T 31-10-2018 IPR006665 OmpA-like domain Y89_5623 9d9d0ec2ecd9b318caaa03b1e325f89a 347 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 15 63 3.1E-17 T 31-10-2018 IPR025713 Motility protein B, N-terminal domain Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 SUPERFAMILY SSF51621 4 339 6.63E-91 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 3.9E-27 T 31-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 SUPERFAMILY SSF50800 73 168 1.92E-25 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 Gene3D G3DSA:3.20.20.60 5 332 2.8E-162 T 31-10-2018 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 31-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 1.5E-149 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 Gene3D G3DSA:2.40.33.10 73 169 2.8E-162 T 31-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 SUPERFAMILY SSF52935 320 470 1.16E-37 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 62 78 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 310 326 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 266 290 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 291 309 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 241 265 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 187 201 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 PRINTS PR01050 Pyruvate kinase family signature 214 240 5.5E-60 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 Gene3D G3DSA:3.40.1380.20 333 466 2.8E-162 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_3840 26af2b59c2b46855c2a9bd93f6f51269 477 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 1.9E-110 T 31-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 447 4.4E-56 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Gene3D G3DSA:3.30.420.40 2 251 1.4E-102 T 31-10-2018 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 1.8E-73 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Hamap MF_00186 Glycerol kinase [glpK]. 2 494 54.257 T 31-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 SUPERFAMILY SSF53067 4 253 2.85E-93 T 31-10-2018 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 SUPERFAMILY SSF53067 253 492 9.06E-78 T 31-10-2018 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 Gene3D G3DSA:3.30.420.40 252 491 5.5E-84 T 31-10-2018 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 PIRSF PIRSF000538 2 494 3.1E-169 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_1447 f0467fa7f80f8f3b03d6e54f21ed5f2a 494 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 491 2.4E-217 T 31-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y89_1051 c9b6acb87369188b306172fb5e7d8f62 143 SUPERFAMILY SSF54637 2 139 5.27E-29 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1051 c9b6acb87369188b306172fb5e7d8f62 143 Gene3D G3DSA:3.10.129.10 3 140 4.2E-34 T 31-10-2018 Y89_1051 c9b6acb87369188b306172fb5e7d8f62 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 1.5E-18 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_1051 c9b6acb87369188b306172fb5e7d8f62 143 Pfam PF03061 Thioesterase superfamily 50 124 6.4E-17 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Gene3D G3DSA:3.40.228.10 177 706 0.0 T 31-10-2018 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 SMART SM00926 41 95 4.3E-9 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 3 829 0.0 T 31-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 63 - T 31-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Pfam PF00384 Molybdopterin oxidoreductase 98 571 1.7E-86 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Gene3D G3DSA:2.40.40.20 707 830 9.4E-51 T 31-10-2018 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 43 94 2.2E-14 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Pfam PF01568 Molydopterin dinucleotide binding domain 717 825 6.0E-25 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 831 32.351 T 31-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Gene3D G3DSA:3.30.200.210 42 669 0.0 T 31-10-2018 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 SUPERFAMILY SSF50692 690 829 4.14E-42 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 Gene3D G3DSA:3.40.50.740 98 626 0.0 T 31-10-2018 Y89_4179 d9a0e9538c99708e393ecc48f3e729d8 834 SUPERFAMILY SSF53706 37 648 3.01E-201 T 31-10-2018 Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 Gene3D G3DSA:4.10.1230.10 100 156 2.0E-27 T 31-10-2018 IPR027438 Ecotin, C-terminal Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 Pfam PF03974 Ecotin 26 146 1.0E-51 T 31-10-2018 IPR005658 Proteinase inhibitor I11, ecotin Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 Gene3D G3DSA:2.60.40.550 17 99 4.1E-32 T 31-10-2018 Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 SUPERFAMILY SSF49772 23 154 4.97E-55 T 31-10-2018 IPR036198 Ecotin superfamily Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 PIRSF PIRSF006865 1 156 2.1E-65 T 31-10-2018 IPR005658 Proteinase inhibitor I11, ecotin Y89_2280 7f8214956c7d178ed4b6c2ed56c68965 156 Hamap MF_00706 Ecotin [eco]. 1 156 40.185 T 31-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria Y89_2170 a7647a1e398569b18378d94138760b73 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 1.3E-21 T 31-10-2018 IPR013185 Translation elongation factor, KOW-like Y89_2170 a7647a1e398569b18378d94138760b73 188 Hamap MF_00141 Elongation factor P [efp]. 1 186 48.49 T 31-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Y89_2170 a7647a1e398569b18378d94138760b73 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 3.3E-21 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Y89_2170 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50249 65 128 1.67E-12 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2170 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50249 130 186 6.17E-15 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2170 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.30.30.30 1 63 1.5E-22 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 Y89_2170 a7647a1e398569b18378d94138760b73 188 SUPERFAMILY SSF50104 1 62 5.48E-17 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily Y89_2170 a7647a1e398569b18378d94138760b73 188 PIRSF PIRSF005901 1 187 2.3E-57 T 31-10-2018 IPR020599 Translation elongation factor P/YeiP Y89_2170 a7647a1e398569b18378d94138760b73 188 SMART SM01185 67 122 3.1E-14 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Y89_2170 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.40.50.140 129 188 2.5E-27 T 31-10-2018 Y89_2170 a7647a1e398569b18378d94138760b73 188 SMART SM00841 130 185 7.5E-25 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Y89_2170 a7647a1e398569b18378d94138760b73 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 186 8.5E-61 T 31-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Y89_2170 a7647a1e398569b18378d94138760b73 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 122 7.7E-13 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Y89_2170 a7647a1e398569b18378d94138760b73 188 Gene3D G3DSA:2.40.50.140 64 128 1.1E-20 T 31-10-2018 Y89_1155 567c0a2db6124b067cca70e9c9d99fa8 272 SUPERFAMILY SSF109998 19 142 1.65E-5 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily Y89_1155 567c0a2db6124b067cca70e9c9d99fa8 272 SUPERFAMILY SSF54534 109 215 5.3E-22 T 31-10-2018 Y89_1155 567c0a2db6124b067cca70e9c9d99fa8 272 Gene3D G3DSA:3.10.50.40 114 222 5.7E-21 T 31-10-2018 Y89_1155 567c0a2db6124b067cca70e9c9d99fa8 272 Pfam PF00639 PPIC-type PPIASE domain 122 214 7.6E-21 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF00512 His Kinase A (phospho-acceptor) domain 757 819 2.0E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00387 865 977 1.2E-36 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00091 632 700 3.2E-4 T 31-10-2018 IPR000014 PAS domain Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF00989 PAS fold 635 718 7.1E-6 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 902 916 2.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 933 951 2.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 920 930 2.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 PRINTS PR00344 Bacterial sensor protein C-terminal signature 961 974 2.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF47384 750 819 1.79E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF55785 623 716 5.33E-9 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SMART SM00388 756 822 1.1E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:3.30.565.10 817 975 5.5E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:1.10.287.130 738 816 4.6E-19 T 31-10-2018 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 633 748 6.0E-9 T 31-10-2018 IPR000014 PAS domain Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Gene3D G3DSA:3.30.450.20 623 737 5.5E-8 T 31-10-2018 Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 SUPERFAMILY SSF55874 817 978 2.23E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5338 107343bf24965050ef6936e13cf9cb3f 983 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 865 975 1.4E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5400 2bf409278229b3150d341ddf99c95b7a 333 SMART SM00342 243 325 6.4E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_5400 2bf409278229b3150d341ddf99c95b7a 333 Pfam PF12833 Helix-turn-helix domain 249 327 1.6E-17 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_5400 2bf409278229b3150d341ddf99c95b7a 333 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 199 7.7E-41 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_5400 2bf409278229b3150d341ddf99c95b7a 333 SUPERFAMILY SSF46689 278 328 8.51E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5400 2bf409278229b3150d341ddf99c95b7a 333 Gene3D G3DSA:1.10.10.60 222 331 1.0E-23 T 31-10-2018 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 18.137 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 3.0E-10 T 31-10-2018 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 SUPERFAMILY SSF57840 1 38 2.75E-17 T 31-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 Pfam PF00444 Ribosomal protein L36 1 38 6.1E-21 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0780 fe6b616d3fd6ca324a32be2c6f1e9388 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 6.0E-22 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 SUPERFAMILY SSF52540 242 444 6.5E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 Pfam PF02881 SRP54-type protein, helical bundle domain 160 225 4.3E-13 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 SMART SM00962 244 445 6.2E-122 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 173 444 1.1E-109 T 31-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 Gene3D G3DSA:1.20.120.140 145 443 7.7E-116 T 31-10-2018 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 SUPERFAMILY SSF47364 143 223 1.03E-20 T 31-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 SMART SM00963 148 229 2.5E-24 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 172 445 62.412 T 31-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 Gene3D G3DSA:3.40.50.300 244 433 7.7E-116 T 31-10-2018 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 SMART SM00382 243 390 2.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 Pfam PF00448 SRP54-type protein, GTPase domain 245 444 3.4E-77 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_0395 6d3326f8e041ff352847e3e3809bd9c9 450 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 418 431 - T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_2363 8bc7cc5c3df11878131fdd95af7124b7 130 SUPERFAMILY SSF51316 3 123 1.78E-36 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_2363 8bc7cc5c3df11878131fdd95af7124b7 130 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 102 1.6E-17 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y89_2363 8bc7cc5c3df11878131fdd95af7124b7 130 Gene3D G3DSA:2.170.150.70 4 104 3.0E-10 T 31-10-2018 Y89_1960 6d47aca396ef831d40dd5846b279316f 507 SUPERFAMILY SSF53756 16 502 4.54E-59 T 31-10-2018 Y89_1960 6d47aca396ef831d40dd5846b279316f 507 Pfam PF13692 Glycosyl transferases group 1 318 468 6.6E-22 T 31-10-2018 Y89_1960 6d47aca396ef831d40dd5846b279316f 507 Gene3D G3DSA:3.40.50.2000 311 488 1.3E-33 T 31-10-2018 Y89_1960 6d47aca396ef831d40dd5846b279316f 507 Pfam PF11997 Domain of unknown function (DUF3492) 12 290 1.0E-91 T 31-10-2018 IPR022622 Domain of unknown function DUF3492 Y89_1960 6d47aca396ef831d40dd5846b279316f 507 Gene3D G3DSA:3.40.50.2000 19 310 6.9E-9 T 31-10-2018 Y89_4213 7358922ba4d4ed3e41c6f66034c45cb0 282 SUPERFAMILY SSF55797 145 280 6.28E-22 T 31-10-2018 IPR035940 CAP superfamily Y89_4213 7358922ba4d4ed3e41c6f66034c45cb0 282 Pfam PF00188 Cysteine-rich secretory protein family 152 279 4.0E-19 T 31-10-2018 IPR014044 CAP domain Y89_4213 7358922ba4d4ed3e41c6f66034c45cb0 282 Gene3D G3DSA:3.40.33.10 143 280 4.5E-40 T 31-10-2018 IPR035940 CAP superfamily Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 SMART SM00382 365 543 2.9E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 Gene3D G3DSA:3.40.50.300 335 548 6.9E-43 T 31-10-2018 Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 SUPERFAMILY SSF90123 13 311 1.57E-33 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 SUPERFAMILY SSF52540 335 544 1.08E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 Pfam PF00005 ABC transporter 358 492 3.0E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 Pfam PF00664 ABC transporter transmembrane region 26 260 5.7E-13 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 Gene3D G3DSA:1.20.1560.10 10 313 6.3E-29 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_2802 228e7c8643b07d7a680baaed8bf5bbb7 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 10 544 1.0E-202 T 31-10-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015833|GO:0016021|GO:1904680 Y89_5877 a50c232e8bccd093ec51ab732813c335 200 Gene3D G3DSA:3.40.109.10 1 196 1.1E-46 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_5877 a50c232e8bccd093ec51ab732813c335 200 Pfam PF00881 Nitroreductase family 7 177 2.1E-33 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y89_5877 a50c232e8bccd093ec51ab732813c335 200 SUPERFAMILY SSF55469 1 195 3.27E-49 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_3275 7c08bb86fa2d45c7507dee0c12bf8525 122 Gene3D G3DSA:1.10.10.60 64 115 3.3E-14 T 31-10-2018 Y89_3275 7c08bb86fa2d45c7507dee0c12bf8525 122 Pfam PF08765 Mor transcription activator family 11 115 1.8E-31 T 31-10-2018 IPR014875 Mor transcription activator Y89_3275 7c08bb86fa2d45c7507dee0c12bf8525 122 SUPERFAMILY SSF46689 20 105 7.53E-20 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Gene3D G3DSA:3.10.20.30 262 366 4.5E-25 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Pfam PF00175 Oxidoreductase NAD-binding domain 128 234 3.1E-14 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 SUPERFAMILY SSF54292 243 365 7.6E-29 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 SUPERFAMILY SSF63380 13 117 1.86E-29 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Gene3D G3DSA:3.40.50.80 120 260 1.2E-29 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 SUPERFAMILY SSF52343 108 250 3.67E-37 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 316 324 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00406 Cytochrome B5 reductase signature 220 228 4.4E-9 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00406 Cytochrome B5 reductase signature 127 146 4.4E-9 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00406 Cytochrome B5 reductase signature 164 175 4.4E-9 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00406 Cytochrome B5 reductase signature 104 118 4.4E-9 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00406 Cytochrome B5 reductase signature 67 74 4.4E-9 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Pfam PF00970 Oxidoreductase FAD-binding domain 25 116 5.4E-17 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Gene3D G3DSA:2.40.30.10 14 117 1.3E-25 T 31-10-2018 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 290 359 1.5E-12 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 164 175 2.0E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 127 146 2.0E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 220 228 2.0E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_6150 4ff46b9c7d1c2c609b297d4dab243c92 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 67 74 2.0E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 3.9E-119 T 31-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 5.2E-178 T 31-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 SUPERFAMILY SSF55205 1 419 2.78E-142 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Gene3D G3DSA:3.65.10.10 6 416 2.8E-178 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 45.313 T 31-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4939 e8ce8d0217dc95389f1892fc4e4ae7ca 421 Gene3D G3DSA:3.65.10.10 21 231 2.8E-178 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Gene3D G3DSA:1.10.540.10 1 126 5.8E-30 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Gene3D G3DSA:1.20.140.10 238 385 5.4E-47 T 31-10-2018 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 220 4.0E-15 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.3E-44 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Gene3D G3DSA:2.40.110.10 127 237 3.8E-29 T 31-10-2018 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 SUPERFAMILY SSF47203 232 385 9.18E-53 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 123 4.6E-15 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3055 b42d2c92bffd38f542ccb8055ddf1bbe 390 SUPERFAMILY SSF56645 1 245 7.72E-57 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2025 3c362db643134730d0317124df524900 407 PIRSF PIRSF000044 2 407 4.7E-232 T 31-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y89_2025 3c362db643134730d0317124df524900 407 Gene3D G3DSA:2.40.30.10 127 264 5.2E-51 T 31-10-2018 Y89_2025 3c362db643134730d0317124df524900 407 SUPERFAMILY SSF63380 106 271 3.08E-36 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_2025 3c362db643134730d0317124df524900 407 SUPERFAMILY SSF54292 40 125 2.14E-23 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2025 3c362db643134730d0317124df524900 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 1.3E-17 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_2025 3c362db643134730d0317124df524900 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 40 116 3.6E-11 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_2025 3c362db643134730d0317124df524900 407 Pfam PF00970 Oxidoreductase FAD-binding domain 204 266 1.2E-9 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_2025 3c362db643134730d0317124df524900 407 Gene3D G3DSA:3.10.20.30 36 126 2.2E-27 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2025 3c362db643134730d0317124df524900 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 6 407 2.9E-230 T 31-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y89_2025 3c362db643134730d0317124df524900 407 Gene3D G3DSA:3.40.50.80 275 392 1.1E-32 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2025 3c362db643134730d0317124df524900 407 SUPERFAMILY SSF52343 257 402 3.14E-37 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2025 3c362db643134730d0317124df524900 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 4 407 65.22 T 31-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 Gene3D G3DSA:2.30.250.10 86 218 2.1E-178 T 31-10-2018 IPR023358 Peptidase M18, domain 2 GO:0004177 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 SUPERFAMILY SSF53187 4 423 4.34E-107 T 31-10-2018 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 Hamap MF_00467 Probable M18 family aminopeptidase 2 [apeB]. 1 425 60.487 T 31-10-2018 IPR022984 M18 family aminopeptidase 2, putative GO:0004177 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 Gene3D G3DSA:3.40.630.10 10 422 2.1E-178 T 31-10-2018 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 12 423 9.5E-138 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 SUPERFAMILY SSF101821 88 213 1.19E-32 T 31-10-2018 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 301 317 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 109 129 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 76 92 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 144 161 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 390 405 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_1767 2dd791fae89f29847aa092d0f8e0a659 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 262 280 1.5E-41 T 31-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF14793 Domain of unknown function (DUF4478) 10 115 2.0E-44 T 31-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 Gene3D G3DSA:3.30.1850.10 6 123 4.3E-46 T 31-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 SUPERFAMILY SSF102405 122 331 2.44E-41 T 31-10-2018 Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF11892 Domain of unknown function (DUF3412) 335 456 6.7E-56 T 31-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 Pfam PF03641 Possible lysine decarboxylase 192 331 2.0E-31 T 31-10-2018 IPR031100 LOG family Y89_0907 56f56c747d091ef0b6ad1f30b1c784c6 461 Gene3D G3DSA:3.40.50.450 124 455 2.8E-119 T 31-10-2018 Y89_2400 42765b646ae87010fe102859a8d71f29 238 Pfam PF00072 Response regulator receiver domain 14 120 1.1E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2400 42765b646ae87010fe102859a8d71f29 238 Gene3D G3DSA:3.40.50.2300 5 129 4.9E-33 T 31-10-2018 Y89_2400 42765b646ae87010fe102859a8d71f29 238 SUPERFAMILY SSF52172 9 190 2.13E-36 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2400 42765b646ae87010fe102859a8d71f29 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 232 6.1E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2400 42765b646ae87010fe102859a8d71f29 238 SMART SM00448 11 121 1.8E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2400 42765b646ae87010fe102859a8d71f29 238 Gene3D G3DSA:1.10.10.10 130 237 2.5E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2400 42765b646ae87010fe102859a8d71f29 238 SMART SM00862 156 232 2.1E-13 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 117 146 3.8 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 55 84 0.0023 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 23 52 0.5 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 242 271 1.3E-5 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 180 209 0.74 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 148 177 4.5 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 86 115 840.0 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 273 302 1.1 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SMART SM00567 E-Z type HEAT repeats 211 240 6.6E-8 T 31-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Gene3D G3DSA:1.25.10.10 4 175 1.1E-26 T 31-10-2018 IPR011989 Armadillo-like helical Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Pfam PF13646 HEAT repeats 231 315 1.1E-14 T 31-10-2018 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Pfam PF13646 HEAT repeats 14 97 1.1E-13 T 31-10-2018 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Pfam PF13646 HEAT repeats 139 221 1.0E-13 T 31-10-2018 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 SUPERFAMILY SSF48371 66 310 1.23E-44 T 31-10-2018 IPR016024 Armadillo-type fold Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Gene3D G3DSA:1.25.10.110 260 321 4.2E-5 T 31-10-2018 Y89_2961 b98f00d45bbbd31144de596aed1c76d3 321 Gene3D G3DSA:1.25.10.110 176 255 9.9E-20 T 31-10-2018 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 128 151 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 PIRSF PIRSF000137 361 545 2.0E-42 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 PIRSF PIRSF000137 34 379 1.7E-72 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 Gene3D G3DSA:3.30.410.40 192 482 5.2E-155 T 31-10-2018 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 Gene3D G3DSA:3.50.50.60 53 542 5.2E-155 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 SUPERFAMILY SSF54373 356 487 8.54E-31 T 31-10-2018 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 Pfam PF00732 GMC oxidoreductase 53 336 3.8E-62 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 296 310 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 SUPERFAMILY SSF51905 51 545 1.3E-69 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3156 d4f0153e51844f6f80aee3460b46af2c 545 Pfam PF05199 GMC oxidoreductase 402 539 1.2E-37 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_1830 027c6cc89c7f84c92770e4231eac391a 454 Gene3D G3DSA:2.40.160.180 35 454 4.1E-168 T 31-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily Y89_1830 027c6cc89c7f84c92770e4231eac391a 454 Pfam PF04966 Carbohydrate-selective porin, OprB family 80 454 1.7E-119 T 31-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 Y89_1755 1c1cd281503f9cb2c32f946fc517da8a 159 Gene3D G3DSA:1.25.40.10 6 159 6.6E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1755 1c1cd281503f9cb2c32f946fc517da8a 159 SUPERFAMILY SSF81901 41 158 1.66E-12 T 31-10-2018 Y89_1755 1c1cd281503f9cb2c32f946fc517da8a 159 SMART SM00671 123 159 0.0041 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1755 1c1cd281503f9cb2c32f946fc517da8a 159 SMART SM00671 86 122 19.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 TIGRFAM TIGR00115 tig: trigger factor 11 410 1.3E-138 T 31-10-2018 IPR005215 Trigger factor GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 SUPERFAMILY SSF102735 1 130 8.5E-41 T 31-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Hamap MF_00303 Trigger factor [tig]. 1 417 21.476 T 31-10-2018 IPR005215 Trigger factor GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 PIRSF PIRSF003095 1 432 3.7E-123 T 31-10-2018 IPR005215 Trigger factor GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Gene3D G3DSA:1.10.3120.10 116 416 6.7E-97 T 31-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 236 2.2E-12 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Gene3D G3DSA:3.10.50.40 150 246 6.7E-97 T 31-10-2018 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 1.2E-42 T 31-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 SUPERFAMILY SSF54534 90 241 2.36E-34 T 31-10-2018 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 411 3.1E-36 T 31-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 Gene3D G3DSA:3.30.70.1050 1 115 4.8E-41 T 31-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Y89_3529 166b450d4e304e64e232af39c5d2fc46 436 SUPERFAMILY SSF109998 248 428 8.63E-47 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 79 1.4E-25 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 SUPERFAMILY SSF52833 1 102 1.66E-25 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 SUPERFAMILY SSF47616 78 209 6.69E-27 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 Gene3D G3DSA:3.40.30.10 8 204 6.9E-56 T 31-10-2018 Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 Gene3D G3DSA:1.20.1050.10 81 199 6.9E-56 T 31-10-2018 Y89_2200 26daef8655fa3ddc1a2c2d184bd65285 220 Pfam PF14497 Glutathione S-transferase, C-terminal domain 129 204 6.1E-13 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3385 63072c8f5f2a154886fb9f3ea4e2dbc1 102 Pfam PF01527 Transposase 3 76 5.8E-21 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_3385 63072c8f5f2a154886fb9f3ea4e2dbc1 102 Gene3D G3DSA:1.10.10.60 9 93 4.5E-12 T 31-10-2018 Y89_3385 63072c8f5f2a154886fb9f3ea4e2dbc1 102 SUPERFAMILY SSF46689 5 95 5.38E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4377 63072c8f5f2a154886fb9f3ea4e2dbc1 102 Pfam PF01527 Transposase 3 76 5.8E-21 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_4377 63072c8f5f2a154886fb9f3ea4e2dbc1 102 Gene3D G3DSA:1.10.10.60 9 93 4.5E-12 T 31-10-2018 Y89_4377 63072c8f5f2a154886fb9f3ea4e2dbc1 102 SUPERFAMILY SSF46689 5 95 5.38E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 SMART SM00866 90 229 1.3E-33 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 8.9E-11 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 8.9E-11 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 Pfam PF07702 UTRA domain 90 227 4.9E-36 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 Gene3D G3DSA:3.40.1410.10 74 233 1.6E-37 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_2227 391d2b014a1181bc977ccd04845ad314 239 SUPERFAMILY SSF64288 57 232 1.43E-44 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_2227 391d2b014a1181bc977ccd04845ad314 239 SMART SM00345 12 69 1.8E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 69 3.1E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2227 391d2b014a1181bc977ccd04845ad314 239 SUPERFAMILY SSF46785 5 73 5.54E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2227 391d2b014a1181bc977ccd04845ad314 239 Gene3D G3DSA:1.10.10.10 8 73 1.3E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2635 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:3.30.300.30 440 554 4.6E-30 T 31-10-2018 Y89_2635 84efd865734107b808897b23407199fd 555 SUPERFAMILY SSF56801 28 543 7.46E-141 T 31-10-2018 Y89_2635 84efd865734107b808897b23407199fd 555 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 530 1.2E-23 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2635 84efd865734107b808897b23407199fd 555 Gene3D G3DSA:3.40.50.12780 19 439 1.0E-97 T 31-10-2018 Y89_2635 84efd865734107b808897b23407199fd 555 Pfam PF00501 AMP-binding enzyme 40 443 6.8E-75 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2635 84efd865734107b808897b23407199fd 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2955 1460251549d9744fca245ff5c8082a4f 249 Gene3D G3DSA:3.40.1410.10 79 245 3.8E-43 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_2955 1460251549d9744fca245ff5c8082a4f 249 Gene3D G3DSA:1.10.10.10 10 78 5.3E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2955 1460251549d9744fca245ff5c8082a4f 249 SMART SM00866 96 236 5.1E-33 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 SUPERFAMILY SSF64288 63 243 2.04E-47 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_2955 1460251549d9744fca245ff5c8082a4f 249 Pfam PF07702 UTRA domain 97 236 8.0E-37 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 SMART SM00345 16 75 5.5E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.7E-10 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.7E-10 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 1.5E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2955 1460251549d9744fca245ff5c8082a4f 249 SUPERFAMILY SSF46785 7 79 2.19E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1932 55b72af5af4bc59a8be6aab5a3a8eca1 326 Gene3D G3DSA:3.60.21.10 10 315 7.2E-41 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_1932 55b72af5af4bc59a8be6aab5a3a8eca1 326 Pfam PF00149 Calcineurin-like phosphoesterase 11 149 6.1E-10 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_1932 55b72af5af4bc59a8be6aab5a3a8eca1 326 SUPERFAMILY SSF56300 5 305 8.98E-34 T 31-10-2018 Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 Gene3D G3DSA:1.20.120.530 84 231 2.9E-34 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 SUPERFAMILY SSF46785 13 108 8.81E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 SMART SM00895 90 217 2.3E-26 T 31-10-2018 IPR011711 GntR, C-terminal Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 SUPERFAMILY SSF48008 87 224 1.2E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 Gene3D G3DSA:1.10.10.10 14 81 2.6E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 SMART SM00345 22 80 1.7E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 Pfam PF07729 FCD domain 90 216 7.0E-30 T 31-10-2018 IPR011711 GntR, C-terminal Y89_4560 9118ca874e0d3f6b4ad49f812455bcfa 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 8.8E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1929 60555f196a4e80e0e21b1e181b729532 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 294 7.0E-16 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_1929 60555f196a4e80e0e21b1e181b729532 310 Gene3D G3DSA:3.40.50.1100 42 124 1.3E-15 T 31-10-2018 Y89_1929 60555f196a4e80e0e21b1e181b729532 310 PIRSF PIRSF006278 1 309 1.7E-74 T 31-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y89_1929 60555f196a4e80e0e21b1e181b729532 310 Gene3D G3DSA:3.40.50.1100 125 310 8.2E-30 T 31-10-2018 Y89_1929 60555f196a4e80e0e21b1e181b729532 310 SUPERFAMILY SSF53686 8 305 2.73E-57 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 524 543 4.3E-22 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 547 559 4.3E-22 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 164 178 4.3E-22 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 471 481 4.3E-22 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 315 329 4.3E-22 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Gene3D G3DSA:2.70.150.20 117 222 2.1E-25 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Gene3D G3DSA:3.40.50.1000 297 574 2.7E-63 T 31-10-2018 IPR023214 HAD superfamily Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 SUPERFAMILY SSF81665 47 309 3.92E-10 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 ProSitePatterns PS01229 Hypothetical cof family signature 2. 524 546 - T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Gene3D G3DSA:3.40.1110.10 326 456 2.7E-63 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Pfam PF00122 E1-E2 ATPase 121 293 1.0E-32 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 SUPERFAMILY SSF81653 123 217 3.66E-20 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 317 323 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Pfam PF00702 haloacid dehalogenase-like hydrolase 313 538 5.5E-32 T 31-10-2018 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 28 685 6.2E-292 T 31-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 85 353 2.2E-30 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 385 606 9.7E-42 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 SUPERFAMILY SSF56784 303 568 2.68E-38 T 31-10-2018 IPR036412 HAD-like superfamily Y89_3701 1ac5137f4ab9fcbe01b1316d5a894799 690 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 24 688 40.196 T 31-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Y89_1533 2e819e29c9590a305be45c282c324fc3 299 SUPERFAMILY SSF103481 45 147 9.15E-7 T 31-10-2018 Y89_1533 2e819e29c9590a305be45c282c324fc3 299 SUPERFAMILY SSF103481 182 287 9.42E-9 T 31-10-2018 Y89_1533 2e819e29c9590a305be45c282c324fc3 299 TIGRFAM TIGR00688 rarD: protein RarD 6 260 7.8E-55 T 31-10-2018 IPR004626 RarD protein GO:0005887 Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 SUPERFAMILY SSF52540 351 736 4.33E-29 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 Pfam PF00271 Helicase conserved C-terminal domain 584 695 1.7E-5 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 Gene3D G3DSA:3.40.50.300 495 749 1.8E-24 T 31-10-2018 Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 SMART SM00487 69 413 5.5E-9 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 Gene3D G3DSA:3.40.50.300 61 181 7.0E-8 T 31-10-2018 Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 Gene3D G3DSA:3.40.50.10810 312 454 1.9E-6 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_4656 a6e914a15935fdf63d3612f4cd781c8a 759 SUPERFAMILY SSF52540 69 411 1.8E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2113 bd561b62533c17c936ef50a11d621044 242 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 3 235 4.1E-56 T 31-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 Y89_2109 a89fee200296106c06de44b03bce5eb1 323 SUPERFAMILY SSF53807 43 318 1.37E-45 T 31-10-2018 Y89_2109 a89fee200296106c06de44b03bce5eb1 323 Gene3D G3DSA:3.40.50.1980 148 318 9.3E-60 T 31-10-2018 Y89_2109 a89fee200296106c06de44b03bce5eb1 323 Pfam PF01497 Periplasmic binding protein 54 295 2.5E-24 T 31-10-2018 IPR002491 ABC transporter periplasmic binding domain Y89_2109 a89fee200296106c06de44b03bce5eb1 323 Gene3D G3DSA:3.40.50.1980 22 145 7.3E-20 T 31-10-2018 Y89_0938 fd83d0790f7e843858cf9dd4e2c7c77f 198 Gene3D G3DSA:2.60.40.1090 42 197 1.7E-25 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_0938 fd83d0790f7e843858cf9dd4e2c7c77f 198 SUPERFAMILY SSF49401 42 198 8.45E-20 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF53850 39 256 4.21E-51 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.40.190.10 123 217 4.6E-70 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.30.450.20 321 426 1.0E-22 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00052 979 1225 1.3E-123 T 31-10-2018 IPR001633 EAL domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF00990 Diguanylate cyclase, GGDEF domain 808 965 6.7E-54 T 31-10-2018 IPR000160 GGDEF domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF55785 423 548 2.09E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 436 556 5.7E-12 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 687 804 5.5E-20 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 308 432 3.0E-14 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 560 682 3.3E-16 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00091 312 380 0.0026 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00091 438 505 1.8E-5 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00091 683 749 6.9E-8 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00091 562 629 6.6E-6 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.30.450.20 558 673 3.3E-21 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00267 797 969 2.1E-71 T 31-10-2018 IPR000160 GGDEF domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF55073 813 970 4.79E-54 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF55785 688 795 5.24E-29 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00086 510 550 3.5 T 31-10-2018 IPR001610 PAC motif Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00086 635 675 83.0 T 31-10-2018 IPR001610 PAC motif Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00086 386 426 1.0E-5 T 31-10-2018 IPR001610 PAC motif Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00086 755 797 5.5E-5 T 31-10-2018 IPR001610 PAC motif Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF141868 984 1231 1.7E-89 T 31-10-2018 IPR035919 EAL domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF55785 297 424 8.38E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF08447 PAS fold 336 408 2.9E-10 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.40.190.10 28 254 4.6E-70 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 804 968 1.6E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.30.70.270 807 981 4.3E-64 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 256 2.7E-37 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SUPERFAMILY SSF55785 547 673 2.97E-19 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.30.450.20 427 548 9.5E-21 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF00563 EAL domain 985 1220 3.1E-77 T 31-10-2018 IPR001633 EAL domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 SMART SM00062 38 258 2.1E-33 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF13426 PAS domain 694 795 7.3E-16 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF13426 PAS domain 572 674 2.0E-8 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Pfam PF13426 PAS domain 448 548 1.3E-5 T 31-10-2018 IPR000014 PAS domain Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.30.450.20 678 806 9.3E-36 T 31-10-2018 Y89_0647 a510cc599c2fbf9baeb615df136945b5 1245 Gene3D G3DSA:3.20.20.450 982 1232 7.6E-103 T 31-10-2018 IPR035919 EAL domain superfamily Y89_0792 ffa815fc6b54f306772387f1c073e539 101 TIGRFAM TIGR01803 CM-like: chorismate mutase related enzymes 10 90 1.6E-39 T 31-10-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0792 ffa815fc6b54f306772387f1c073e539 101 SUPERFAMILY SSF48600 1 94 2.49E-25 T 31-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0792 ffa815fc6b54f306772387f1c073e539 101 PIRSF PIRSF029775 1 101 9.1E-41 T 31-10-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0792 ffa815fc6b54f306772387f1c073e539 101 Gene3D G3DSA:1.20.59.10 1 101 3.9E-38 T 31-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0792 ffa815fc6b54f306772387f1c073e539 101 SMART SM00830 14 93 4.0E-23 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0792 ffa815fc6b54f306772387f1c073e539 101 Pfam PF01817 Chorismate mutase type II 14 90 3.5E-14 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:2.30.42.10 105 191 6.4E-98 T 31-10-2018 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:3.30.750.44 51 344 6.4E-98 T 31-10-2018 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 Pfam PF03572 Peptidase family S41 203 368 1.3E-57 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 SUPERFAMILY SSF50156 97 178 8.87E-20 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 59 376 8.5E-106 T 31-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 SMART SM00245 177 369 1.8E-75 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 Pfam PF13180 PDZ domain 105 177 1.5E-11 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 SMART SM00228 105 176 1.6E-17 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 Gene3D G3DSA:3.90.226.10 192 366 6.4E-98 T 31-10-2018 Y89_5806 672c2f59b418df00fbbabc099caf4df0 436 SUPERFAMILY SSF52096 42 370 1.06E-82 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2048 c61529f2231555767e1818309ef0482e 192 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 2.0E-56 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_2048 c61529f2231555767e1818309ef0482e 192 Gene3D G3DSA:3.90.950.10 2 191 3.8E-62 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_2048 c61529f2231555767e1818309ef0482e 192 SUPERFAMILY SSF52972 2 185 6.21E-58 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_2048 c61529f2231555767e1818309ef0482e 192 PIRSF PIRSF006305 1 191 2.6E-46 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_2048 c61529f2231555767e1818309ef0482e 192 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 31.15 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_2048 c61529f2231555767e1818309ef0482e 192 Pfam PF02545 Maf-like protein 4 185 8.1E-45 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 Gene3D G3DSA:2.40.30.10 1 97 3.5E-28 T 31-10-2018 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 Gene3D G3DSA:3.10.20.30 221 317 6.5E-25 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 SUPERFAMILY SSF54292 209 316 1.84E-29 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 SUPERFAMILY SSF52343 102 221 1.96E-28 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 244 307 9.9E-13 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 266 274 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 SUPERFAMILY SSF63380 2 96 2.2E-26 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 133 142 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 86 100 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 187 195 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 26 36 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 36 48 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 108 127 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 48 62 9.0E-48 T 31-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Y89_5575 4ee79d9c32e90612819170a0c38d00bf 317 Gene3D G3DSA:3.40.50.80 98 219 5.8E-27 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 Hamap MF_00015 LexA repressor [lexA]. 3 204 32.413 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 Pfam PF01726 LexA DNA binding domain 1 65 1.9E-31 T 31-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 Gene3D G3DSA:2.10.109.10 86 204 5.5E-43 T 31-10-2018 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 Pfam PF00717 Peptidase S24-like 120 186 1.0E-14 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 TIGRFAM TIGR00498 lexA: repressor LexA 1 204 6.5E-75 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 1.9E-12 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 1.9E-12 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 1.9E-12 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 SUPERFAMILY SSF46785 3 70 1.7E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 SUPERFAMILY SSF51306 82 203 6.8E-36 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_2012 f2ebaeb68fa7576cf01473b7f957f178 204 Gene3D G3DSA:1.10.10.10 1 69 2.0E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5287 adcdc37346100db5f9d39e883bc36f1f 215 SMART SM00947 30 193 3.6E-65 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_5287 adcdc37346100db5f9d39e883bc36f1f 215 Pfam PF00484 Carbonic anhydrase 37 187 7.5E-50 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_5287 adcdc37346100db5f9d39e883bc36f1f 215 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_5287 adcdc37346100db5f9d39e883bc36f1f 215 SUPERFAMILY SSF53056 1 202 4.32E-73 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_5287 adcdc37346100db5f9d39e883bc36f1f 215 Gene3D G3DSA:3.40.1050.10 3 211 1.4E-84 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_1330 dc0bc1f05ebed1f6c229d087c79cebb8 248 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 6 224 1.6E-40 T 31-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Y89_1330 dc0bc1f05ebed1f6c229d087c79cebb8 248 Gene3D G3DSA:3.60.160.10 1 248 2.7E-115 T 31-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily Y89_1330 dc0bc1f05ebed1f6c229d087c79cebb8 248 SUPERFAMILY SSF51219 6 235 3.14E-84 T 31-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily Y89_1330 dc0bc1f05ebed1f6c229d087c79cebb8 248 Pfam PF01987 Mitochondrial biogenesis AIM24 8 222 9.9E-65 T 31-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 Gene3D G3DSA:3.40.50.300 228 502 3.3E-119 T 31-10-2018 Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 SUPERFAMILY SSF52540 112 499 9.46E-106 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 SUPERFAMILY SSF160246 17 81 2.43E-14 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 Pfam PF00437 Type II/IV secretion system protein 129 394 1.3E-92 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 Gene3D G3DSA:3.30.450.90 96 227 4.7E-53 T 31-10-2018 Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 322 336 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 Gene3D G3DSA:3.30.300.160 9 95 1.2E-12 T 31-10-2018 Y89_1916 3f608b07226f9d6d91c88b73f49dc89a 502 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 17 499 9.0E-217 T 31-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 SUPERFAMILY SSF58104 181 490 1.31E-77 T 31-10-2018 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 297 456 5.7E-43 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 Pfam PF00672 HAMP domain 162 205 6.2E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 SMART SM00283 228 489 6.3E-72 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 SMART SM00304 160 213 6.4E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2155 70988e75f7e4529dca6cd67e2f3ca0dd 490 Gene3D G3DSA:1.10.287.950 160 490 9.1E-73 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 357 478 1.3E-14 T 31-10-2018 IPR000014 PAS domain Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 735 1.8E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF52172 756 870 7.83E-28 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:3.40.50.2300 749 872 2.9E-25 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:1.10.287.130 503 575 6.8E-18 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00086 429 471 3.2E-7 T 31-10-2018 IPR001610 PAC motif Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00086 141 184 26.0 T 31-10-2018 IPR001610 PAC motif Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Pfam PF00072 Response regulator receiver domain 759 865 7.5E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:3.30.450.20 66 192 1.4E-20 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF55781 186 352 2.62E-15 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 715 1.6E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 PRINTS PR00344 Bacterial sensor protein C-terminal signature 666 680 1.6E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 PRINTS PR00344 Bacterial sensor protein C-terminal signature 721 734 1.6E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 694 1.6E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:3.30.450.40 193 357 2.5E-9 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF47384 505 573 4.32E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:3.30.565.10 577 746 5.2E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Pfam PF00512 His Kinase A (phospho-acceptor) domain 512 574 6.3E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00388 511 576 2.7E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00448 757 865 1.8E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Gene3D G3DSA:3.30.450.20 358 488 4.3E-23 T 31-10-2018 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF55785 349 469 2.79E-22 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF55785 90 190 5.93E-6 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00091 360 426 6.1E-7 T 31-10-2018 IPR000014 PAS domain Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Pfam PF08448 PAS fold 89 186 1.5E-7 T 31-10-2018 IPR013656 PAS fold-4 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 Pfam PF08448 PAS fold 366 473 1.5E-11 T 31-10-2018 IPR013656 PAS fold-4 Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SMART SM00387 617 737 1.7E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4108 e857d6098b5841c39c0a22cb176e9577 873 SUPERFAMILY SSF55874 567 737 3.27E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0155 c7aad1301f55647a93d057bd40245258 449 SUPERFAMILY SSF51556 58 372 4.31E-100 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_0155 c7aad1301f55647a93d057bd40245258 449 Gene3D G3DSA:2.30.40.10 22 420 1.8E-128 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0155 c7aad1301f55647a93d057bd40245258 449 SUPERFAMILY SSF51338 4 446 2.36E-20 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0155 c7aad1301f55647a93d057bd40245258 449 Pfam PF01979 Amidohydrolase family 55 418 2.8E-60 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_0155 c7aad1301f55647a93d057bd40245258 449 Gene3D G3DSA:3.20.20.140 59 373 1.8E-128 T 31-10-2018 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 Gene3D G3DSA:3.30.360.20 183 275 2.2E-114 T 31-10-2018 IPR036553 RNA 3'-terminal phosphate cyclase, insert domain superfamily Y89_5192 a10404b00edbb1259110da68dda8ee77 341 Hamap MF_00200 RNA 3'-terminal phosphate cyclase [rtcA]. 5 338 38.761 T 31-10-2018 IPR017770 RNA 3'-terminal phosphate cyclase type 1 GO:0003963|GO:0006396 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 SUPERFAMILY SSF55205 271 331 9.15E-7 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 SUPERFAMILY SSF52913 184 278 3.92E-24 T 31-10-2018 IPR036553 RNA 3'-terminal phosphate cyclase, insert domain superfamily Y89_5192 a10404b00edbb1259110da68dda8ee77 341 Pfam PF01137 RNA 3'-terminal phosphate cyclase 12 324 2.4E-77 T 31-10-2018 IPR023797 RNA 3'-terminal phosphate cyclase domain Y89_5192 a10404b00edbb1259110da68dda8ee77 341 ProSitePatterns PS01287 RNA 3'-terminal phosphate cyclase signature. 156 166 - T 31-10-2018 IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site Y89_5192 a10404b00edbb1259110da68dda8ee77 341 TIGRFAM TIGR03399 RNA_3prim_cycl: RNA 3'-phosphate cyclase 6 324 1.5E-126 T 31-10-2018 IPR017770 RNA 3'-terminal phosphate cyclase type 1 GO:0003963|GO:0006396 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 PIRSF PIRSF005378 2 339 2.5E-97 T 31-10-2018 IPR000228 RNA 3'-terminal phosphate cyclase GO:0006396 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 Pfam PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain 183 272 1.3E-8 T 31-10-2018 IPR013791 RNA 3'-terminal phosphate cyclase, insert domain Y89_5192 a10404b00edbb1259110da68dda8ee77 341 SUPERFAMILY SSF55205 5 175 1.77E-58 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y89_5192 a10404b00edbb1259110da68dda8ee77 341 Gene3D G3DSA:3.65.10.20 8 324 2.2E-114 T 31-10-2018 IPR037136 RNA 3'-terminal phosphate cyclase domain superfamily Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Pfam PF00732 GMC oxidoreductase 5 297 4.3E-72 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 256 270 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Gene3D G3DSA:3.30.410.40 150 472 3.9E-163 T 31-10-2018 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 SUPERFAMILY SSF54373 292 475 1.47E-47 T 31-10-2018 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Gene3D G3DSA:3.50.50.60 5 529 3.9E-163 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Pfam PF05199 GMC oxidoreductase 389 525 5.1E-37 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Gene3D G3DSA:1.10.1220.110 96 149 3.9E-163 T 31-10-2018 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 SUPERFAMILY SSF51905 1 533 7.2E-79 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 Gene3D G3DSA:4.10.450.10 38 198 3.9E-163 T 31-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 PIRSF PIRSF000137 1 541 2.0E-133 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_2536 f9bfecd8f20c0643f7df5838be01cc61 556 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 8.9E-58 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF50447 151 299 1.79E-31 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF54980 302 387 3.2E-15 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.30.70.870 306 590 1.7E-129 T 31-10-2018 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF03144 Elongation factor Tu domain 2 219 289 9.6E-10 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 1.7E-286 T 31-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:2.40.30.10 199 299 2.2E-34 T 31-10-2018 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.40.50.300 1 198 7.3E-71 T 31-10-2018 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.1E-24 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 87 98 1.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 51 59 1.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 71 81 1.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 7 20 1.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 PRINTS PR00315 GTP-binding elongation factor signature 123 132 1.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF52540 3 219 3.85E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:2.40.50.250 483 599 1.7E-129 T 31-10-2018 Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Pfam PF00679 Elongation factor G C-terminus 397 477 1.5E-21 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 SUPERFAMILY SSF54980 398 512 1.82E-25 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_5788 b02d05907a991cc2e7dab4889effe0b5 605 Gene3D G3DSA:3.30.70.240 389 482 1.7E-129 T 31-10-2018 Y89_3856 c9ab80dabec896711f5be410668abafa 407 Gene3D G3DSA:1.25.40.10 181 271 5.3E-22 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3856 c9ab80dabec896711f5be410668abafa 407 Gene3D G3DSA:1.25.40.10 119 180 1.3E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3856 c9ab80dabec896711f5be410668abafa 407 SMART SM00028 150 183 0.49 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3856 c9ab80dabec896711f5be410668abafa 407 SMART SM00028 221 254 17.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3856 c9ab80dabec896711f5be410668abafa 407 SUPERFAMILY SSF48452 142 284 1.3E-13 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3856 c9ab80dabec896711f5be410668abafa 407 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 116 1.5E-30 T 31-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI Y89_4758 d75cc267031b0d99454994de0d85c50d 181 Pfam PF04542 Sigma-70 region 2 17 73 2.5E-4 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4758 d75cc267031b0d99454994de0d85c50d 181 Gene3D G3DSA:1.10.1740.10 1 73 5.2E-5 T 31-10-2018 Y89_4758 d75cc267031b0d99454994de0d85c50d 181 SUPERFAMILY SSF88946 2 72 7.06E-9 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4758 d75cc267031b0d99454994de0d85c50d 181 Gene3D G3DSA:1.10.10.10 92 172 2.8E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4758 d75cc267031b0d99454994de0d85c50d 181 SUPERFAMILY SSF88659 92 170 1.61E-11 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_4758 d75cc267031b0d99454994de0d85c50d 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 159 5.5E-18 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_4758 d75cc267031b0d99454994de0d85c50d 181 Pfam PF08281 Sigma-70, region 4 109 161 1.2E-13 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 SUPERFAMILY SSF89360 3 100 1.57E-19 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 Gene3D G3DSA:3.30.300.130 103 191 6.7E-23 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Y89_3480 67ab129867d0761b776a0d2b1f698782 194 SUPERFAMILY SSF117916 98 188 3.05E-26 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Y89_3480 67ab129867d0761b776a0d2b1f698782 194 Pfam PF01521 Iron-sulphur cluster biosynthesis 4 100 4.7E-10 T 31-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 3 194 42.281 T 31-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 121 180 3.0E-28 T 31-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 Gene3D G3DSA:2.60.300.12 2 101 3.5E-11 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 Pfam PF01106 NifU-like domain 114 180 2.3E-21 T 31-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Y89_3480 67ab129867d0761b776a0d2b1f698782 194 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 4 194 6.8E-96 T 31-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SMART SM01018 662 745 7.7E-40 T 31-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SUPERFAMILY SSF47644 657 744 3.66E-28 T 31-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Pfam PF02607 B12 binding domain 664 737 2.4E-24 T 31-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SUPERFAMILY SSF56507 909 1233 1.07E-126 T 31-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Pfam PF00809 Pterin binding enzyme 367 605 4.2E-56 T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SUPERFAMILY SSF52242 748 900 3.01E-44 T 31-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SUPERFAMILY SSF51717 363 636 1.83E-87 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Pfam PF02310 B12 binding domain 754 847 1.9E-19 T 31-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 SUPERFAMILY SSF82282 15 406 1.31E-116 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:3.40.50.280 750 902 3.4E-54 T 31-10-2018 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Pfam PF02574 Homocysteine S-methyltransferase 24 332 8.4E-79 T 31-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:1.10.1240.10 654 742 8.2E-40 T 31-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 TIGRFAM TIGR02082 metH: methionine synthase 20 1200 0.0 T 31-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:1.10.288.10 944 1100 2.4E-137 T 31-10-2018 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 PIRSF PIRSF000381 8 1203 0.0 T 31-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 946 1216 7.7E-123 T 31-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:3.20.20.330 8 345 8.1E-128 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:3.10.196.10 915 1231 2.4E-137 T 31-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_3484 872fe1c826d72ccdfb2d7d4c63d5b43c 1234 Gene3D G3DSA:3.20.20.20 347 649 6.8E-128 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 SUPERFAMILY SSF53850 88 287 5.58E-36 T 31-10-2018 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 Pfam PF03466 LysR substrate binding domain 88 287 2.3E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1439 d2cb47e183be5b9f8366289364beda80 306 Gene3D G3DSA:3.40.190.10 163 268 3.6E-76 T 31-10-2018 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.7E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 Gene3D G3DSA:3.40.190.10 89 289 3.6E-76 T 31-10-2018 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 SUPERFAMILY SSF46785 1 112 8.84E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1439 d2cb47e183be5b9f8366289364beda80 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1439 d2cb47e183be5b9f8366289364beda80 306 Gene3D G3DSA:1.10.10.10 1 88 1.2E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 SUPERFAMILY SSF54523 39 204 3.61E-46 T 31-10-2018 Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.1E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 Pfam PF11612 Type II secretion system (T2SS), protein J 57 197 5.3E-45 T 31-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 5 199 2.1E-92 T 31-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 5.8E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 Gene3D G3DSA:3.10.610.10 36 143 1.1E-31 T 31-10-2018 Y89_1921 03be4e2b30b320e67b41f90603fd61ab 237 SUPERFAMILY SSF54523 7 47 2.2E-5 T 31-10-2018 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 Gene3D G3DSA:3.40.50.1220 276 408 5.8E-37 T 31-10-2018 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 SMART SM00893 95 269 1.1E-5 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 Gene3D G3DSA:3.40.50.620 94 219 1.3E-14 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_6138 51b064d5e4a85415506c5209b064fbca 410 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 283 358 1.1E-23 T 31-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 SUPERFAMILY SSF52467 281 396 1.96E-33 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_6138 51b064d5e4a85415506c5209b064fbca 410 SUPERFAMILY SSF52402 95 219 1.26E-19 T 31-10-2018 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 PIRSF PIRSF000089 92 403 4.5E-69 T 31-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Y89_6138 51b064d5e4a85415506c5209b064fbca 410 Pfam PF01012 Electron transfer flavoprotein domain 101 244 1.0E-15 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 SUPERFAMILY SSF54675 12 114 7.06E-32 T 31-10-2018 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 PIRSF PIRSF006250 7 282 9.1E-110 T 31-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 279 4.1E-95 T 31-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 116 279 6.9E-57 T 31-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 25 113 2.3E-25 T 31-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 Gene3D G3DSA:3.90.1170.20 12 279 4.9E-114 T 31-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 Gene3D G3DSA:3.20.20.70 124 270 4.9E-114 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5010 802a954d2b7085ebb8cae99ac3e99d4d 282 SUPERFAMILY SSF51690 116 280 1.41E-60 T 31-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_4178 11bc2c1ac1f3055e977e590ad83e308e 109 Pfam PF03927 NapD protein 6 78 1.5E-25 T 31-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly Y89_4178 11bc2c1ac1f3055e977e590ad83e308e 109 Gene3D G3DSA:3.30.70.920 5 74 1.2E-22 T 31-10-2018 Y89_4178 11bc2c1ac1f3055e977e590ad83e308e 109 Hamap MF_02200 Chaperone NapD [napD]. 5 83 17.94 T 31-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly Y89_2913 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:3.40.50.300 4 221 3.1E-65 T 31-10-2018 Y89_2913 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:2.40.50.140 288 347 1.4E-31 T 31-10-2018 Y89_2913 f209834afdb5be0a4e703896101cef94 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2913 f209834afdb5be0a4e703896101cef94 370 Pfam PF00005 ABC transporter 20 161 3.9E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2913 f209834afdb5be0a4e703896101cef94 370 Gene3D G3DSA:2.40.50.940 222 356 1.4E-31 T 31-10-2018 Y89_2913 f209834afdb5be0a4e703896101cef94 370 SMART SM00382 28 211 1.2E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2913 f209834afdb5be0a4e703896101cef94 370 Pfam PF08402 TOBE domain 281 355 4.6E-11 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_2913 f209834afdb5be0a4e703896101cef94 370 SUPERFAMILY SSF50331 236 362 1.34E-27 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_2913 f209834afdb5be0a4e703896101cef94 370 SUPERFAMILY SSF52540 4 240 4.62E-84 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 SMART SM00382 40 227 3.9E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 Pfam PF12704 MacB-like periplasmic core domain 291 507 4.1E-37 T 31-10-2018 IPR025857 MacB-like periplasmic core domain Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 Pfam PF00005 ABC transporter 31 179 2.2E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 Gene3D G3DSA:3.40.50.300 8 277 3.9E-69 T 31-10-2018 Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 Pfam PF02687 FtsX-like permease family 570 656 1.4E-9 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y89_2809 3bf1b9fec50599d00fb3f7833fd6996e 663 SUPERFAMILY SSF52540 10 244 2.6E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 1.5E-33 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 Pfam PF01197 Ribosomal protein L31 1 65 1.0E-30 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 Gene3D G3DSA:2.30.170.50 1 70 5.8E-33 T 31-10-2018 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-21 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.0E-21 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.0E-21 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 SUPERFAMILY SSF143800 1 67 5.49E-28 T 31-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5721 2728aa6aa959f51dfa169f7dfbbf72b1 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.851 T 31-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 Gene3D G3DSA:3.40.190.10 105 211 6.2E-81 T 31-10-2018 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 PIRSF PIRSF004846 1 251 1.7E-53 T 31-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 Pfam PF13531 Bacterial extracellular solute-binding protein 27 250 1.6E-44 T 31-10-2018 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 Gene3D G3DSA:3.40.190.10 30 249 6.2E-81 T 31-10-2018 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 SUPERFAMILY SSF53850 25 250 2.88E-63 T 31-10-2018 Y89_3463 b2bf929c150206f40f2dda4c710a5a09 251 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 31 248 3.0E-77 T 31-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Y89_0356 be0548e784309c192ee31b627747bc80 217 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 1.6E-26 T 31-10-2018 Y89_0356 be0548e784309c192ee31b627747bc80 217 Gene3D G3DSA:1.20.1440.100 15 88 2.7E-74 T 31-10-2018 Y89_0356 be0548e784309c192ee31b627747bc80 217 SUPERFAMILY SSF56784 2 210 1.58E-34 T 31-10-2018 IPR036412 HAD-like superfamily Y89_0356 be0548e784309c192ee31b627747bc80 217 Gene3D G3DSA:3.40.50.1000 3 214 2.7E-74 T 31-10-2018 IPR023214 HAD superfamily Y89_0356 be0548e784309c192ee31b627747bc80 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 7.1E-40 T 31-10-2018 Y89_0356 be0548e784309c192ee31b627747bc80 217 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 202 7.0E-42 T 31-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y89_5774 78774963893ae3e3a61e2158eaa77eaf 340 Gene3D G3DSA:3.40.190.100 114 261 1.3E-44 T 31-10-2018 Y89_5774 78774963893ae3e3a61e2158eaa77eaf 340 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 32 318 1.2E-60 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_5774 78774963893ae3e3a61e2158eaa77eaf 340 Gene3D G3DSA:3.40.190.10 33 328 1.3E-44 T 31-10-2018 Y89_5774 78774963893ae3e3a61e2158eaa77eaf 340 SUPERFAMILY SSF53850 27 334 8.68E-77 T 31-10-2018 Y89_5850 fbeab04c439fd8b3ac278be0be22b7cb 181 SUPERFAMILY SSF51182 1 178 4.24E-80 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5850 fbeab04c439fd8b3ac278be0be22b7cb 181 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 176 9.6E-76 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y89_5850 fbeab04c439fd8b3ac278be0be22b7cb 181 Gene3D G3DSA:2.60.120.10 1 181 7.5E-78 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5850 fbeab04c439fd8b3ac278be0be22b7cb 181 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 177 9.6E-91 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y89_5850 fbeab04c439fd8b3ac278be0be22b7cb 181 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 181 7.0E-104 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 PIRSF PIRSF038971 3 387 1.9E-146 T 31-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 Gene3D G3DSA:3.20.20.140 1 267 8.4E-13 T 31-10-2018 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 SUPERFAMILY SSF51338 3 385 7.44E-11 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 Gene3D G3DSA:2.30.40.10 313 387 4.6E-5 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 SUPERFAMILY SSF51556 54 353 8.85E-16 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 Pfam PF07969 Amidohydrolase family 179 387 3.1E-7 T 31-10-2018 IPR013108 Amidohydrolase 3 Y89_1635 86a8c777e8f49e583210282c7cc5ca06 387 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 6 387 2.4E-149 T 31-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 Pfam PF00005 ABC transporter 24 173 2.8E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 Pfam PF00005 ABC transporter 273 428 2.1E-17 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 Gene3D G3DSA:3.40.50.300 264 503 1.6E-40 T 31-10-2018 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 SUPERFAMILY SSF52540 271 488 5.13E-41 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 Gene3D G3DSA:3.40.50.300 6 244 6.3E-49 T 31-10-2018 Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 SMART SM00382 32 221 5.3E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 SMART SM00382 281 476 4.2E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3377 5ec0d237db21199a6f002d6b142ae7f4 510 SUPERFAMILY SSF52540 7 231 1.81E-49 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2278 d9d4bdb12db35ccadaa129c6f4b6b975 147 Pfam PF05232 Chlorhexidine efflux transporter 71 133 5.3E-23 T 31-10-2018 IPR007896 Chlorhexidine efflux transporter Y89_2278 d9d4bdb12db35ccadaa129c6f4b6b975 147 Pfam PF05232 Chlorhexidine efflux transporter 3 65 4.1E-17 T 31-10-2018 IPR007896 Chlorhexidine efflux transporter Y89_5901 117198d33f7b58181b12615da6820e33 142 Gene3D G3DSA:2.40.50.100 15 141 1.9E-47 T 31-10-2018 Y89_5901 117198d33f7b58181b12615da6820e33 142 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 16 140 7.2E-46 T 31-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y89_5901 117198d33f7b58181b12615da6820e33 142 Pfam PF01597 Glycine cleavage H-protein 21 138 1.7E-42 T 31-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y89_5901 117198d33f7b58181b12615da6820e33 142 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 18 139 39.116 T 31-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y89_5901 117198d33f7b58181b12615da6820e33 142 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 62 91 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_5901 117198d33f7b58181b12615da6820e33 142 SUPERFAMILY SSF51230 16 139 2.09E-40 T 31-10-2018 IPR011053 Single hybrid motif Y89_4594 77beb0ece776f0d1a5e083861cec6711 316 Pfam PF03888 MucB/RseB N-terminal domain 23 194 1.8E-55 T 31-10-2018 IPR033434 MucB/RseB, N-terminal Y89_4594 77beb0ece776f0d1a5e083861cec6711 316 Pfam PF17188 MucB/RseB C-terminal domain 210 309 9.5E-24 T 31-10-2018 IPR033436 MucB/RseB, C-terminal Y89_4594 77beb0ece776f0d1a5e083861cec6711 316 Gene3D G3DSA:3.30.200.100 210 314 1.3E-23 T 31-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily Y89_4594 77beb0ece776f0d1a5e083861cec6711 316 PIRSF PIRSF005427 1 315 2.1E-97 T 31-10-2018 IPR005588 MucB/RseB Y89_4594 77beb0ece776f0d1a5e083861cec6711 316 Gene3D G3DSA:2.50.20.10 21 198 7.5E-51 T 31-10-2018 Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 SMART SM00487 23 220 4.4E-59 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 SUPERFAMILY SSF52540 72 357 2.06E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Pfam PF03880 DbpA RNA binding domain 386 456 7.0E-24 T 31-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Gene3D G3DSA:3.40.50.300 2 210 3.1E-73 T 31-10-2018 Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Gene3D G3DSA:3.30.70.330 386 457 3.0E-20 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Gene3D G3DSA:3.40.50.300 211 367 1.7E-44 T 31-10-2018 Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Pfam PF00271 Helicase conserved C-terminal domain 230 337 9.4E-26 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 SMART SM00490 256 337 7.0E-28 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_0476 63724ae276ea9a45e9d1f9ad2f91b2d3 458 Pfam PF00270 DEAD/DEAH box helicase 28 195 2.5E-47 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 SUPERFAMILY SSF46785 4 115 8.56E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 Pfam PF03466 LysR substrate binding domain 93 298 8.0E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:1.10.10.10 1 87 1.3E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.8E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 SUPERFAMILY SSF53850 94 301 2.17E-40 T 31-10-2018 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.7E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.7E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.7E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:3.40.190.10 165 271 2.8E-78 T 31-10-2018 Y89_0225 5c8dde2b62b6fe521955efe33cd15971 306 Gene3D G3DSA:3.40.190.10 95 294 2.8E-78 T 31-10-2018 Y89_1703 27ed0d7a4b7695abe1f8414f12897926 200 Gene3D G3DSA:2.60.120.590 9 199 2.7E-65 T 31-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily Y89_1703 27ed0d7a4b7695abe1f8414f12897926 200 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 16 194 3.4E-34 T 31-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like Y89_1703 27ed0d7a4b7695abe1f8414f12897926 200 SUPERFAMILY SSF51197 8 198 1.79E-63 T 31-10-2018 Y89_2328 318e8721a3f12f74e1a925eef45912b4 265 Gene3D G3DSA:3.40.50.720 1 196 8.0E-47 T 31-10-2018 Y89_2328 318e8721a3f12f74e1a925eef45912b4 265 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 92 5.9E-14 T 31-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Y89_2328 318e8721a3f12f74e1a925eef45912b4 265 SUPERFAMILY SSF51735 4 197 6.9E-33 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6104 5305c3e21a4455b45a70215bb3160137 277 SUPERFAMILY SSF52540 28 264 8.28E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6104 5305c3e21a4455b45a70215bb3160137 277 Gene3D G3DSA:3.40.50.300 26 274 1.3E-61 T 31-10-2018 Y89_6104 5305c3e21a4455b45a70215bb3160137 277 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 32 277 2.3E-125 T 31-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Y89_6104 5305c3e21a4455b45a70215bb3160137 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6104 5305c3e21a4455b45a70215bb3160137 277 SMART SM00382 55 257 3.8E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6104 5305c3e21a4455b45a70215bb3160137 277 Pfam PF00005 ABC transporter 48 201 6.8E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Gene3D G3DSA:1.20.1110.10 252 385 8.2E-20 T 31-10-2018 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 375 381 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Gene3D G3DSA:1.20.1110.10 682 805 3.6E-8 T 31-10-2018 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Pfam PF00702 haloacid dehalogenase-like hydrolase 369 657 6.5E-20 T 31-10-2018 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Pfam PF00690 Cation transporter/ATPase, N-terminus 29 94 3.5E-14 T 31-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 SUPERFAMILY SSF56784 371 742 1.5E-37 T 31-10-2018 IPR036412 HAD-like superfamily Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 SMART SM00831 26 99 8.8E-17 T 31-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Gene3D G3DSA:3.40.50.1000 594 681 9.6E-22 T 31-10-2018 IPR023214 HAD superfamily Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Gene3D G3DSA:3.40.1110.10 386 554 2.4E-52 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 SUPERFAMILY SSF81660 368 551 2.01E-36 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Pfam PF00689 Cation transporting ATPase, C-terminus 726 893 1.5E-15 T 31-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 17 902 0.0 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 286 302 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 407 420 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 303 322 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 5.6E-89 T 31-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Gene3D G3DSA:2.70.150.10 125 251 9.2E-32 T 31-10-2018 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 Pfam PF00122 E1-E2 ATPase 147 353 3.8E-43 T 31-10-2018 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 392 7.6E-20 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 732 1.3E-28 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 SUPERFAMILY SSF81665 42 900 6.02E-99 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_5494 42f5f8e2d24822fc5b89e48d2141e78a 903 SUPERFAMILY SSF81653 161 273 2.35E-26 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Pfam PF13953 PapC C-terminal domain 780 843 3.9E-21 T 31-10-2018 IPR025949 PapC-like, C-terminal domain Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Gene3D G3DSA:3.10.20.410 33 157 2.1E-25 T 31-10-2018 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Gene3D G3DSA:2.60.40.3110 270 359 2.1E-30 T 31-10-2018 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Gene3D G3DSA:2.60.40.2070 778 870 6.8E-20 T 31-10-2018 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Pfam PF00577 Outer membrane usher protein 197 771 8.3E-143 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Pfam PF13954 PapC N-terminal domain 35 179 4.9E-40 T 31-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 Gene3D G3DSA:2.60.40.2610 686 776 2.9E-28 T 31-10-2018 Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 312 322 - T 31-10-2018 IPR018030 Fimbrial membrane usher, conserved site Y89_3150 980bd5af2dc19783a58be6f34d24fda5 872 SUPERFAMILY SSF141729 34 157 3.79E-28 T 31-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 Y89_0581 cdac6de043e59345a593755f4f10d693 392 Gene3D G3DSA:3.50.50.60 6 389 4.6E-128 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0581 cdac6de043e59345a593755f4f10d693 392 SUPERFAMILY SSF160996 190 336 2.09E-39 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.3E-5 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 3.3E-5 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 345 367 3.3E-5 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 Gene3D G3DSA:1.10.8.260 261 320 4.6E-128 T 31-10-2018 IPR023166 HI0933-like insert domain superfamily Y89_0581 cdac6de043e59345a593755f4f10d693 392 Gene3D G3DSA:2.40.30.10 188 337 4.6E-128 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 SUPERFAMILY SSF51905 4 391 4.53E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0581 cdac6de043e59345a593755f4f10d693 392 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 390 9.8E-127 T 31-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Y89_0581 cdac6de043e59345a593755f4f10d693 392 Pfam PF03486 HI0933-like protein 5 390 8.5E-151 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.2E-7 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 360 367 1.2E-7 T 31-10-2018 Y89_0581 cdac6de043e59345a593755f4f10d693 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.2E-7 T 31-10-2018 Y89_6180 3a1b5a61075e76d019801ea1552f09aa 464 Pfam PF01136 Peptidase family U32 80 337 9.8E-98 T 31-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y89_6180 3a1b5a61075e76d019801ea1552f09aa 464 ProSitePatterns PS01276 Peptidase family U32 signature. 166 184 - T 31-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y89_6180 3a1b5a61075e76d019801ea1552f09aa 464 Gene3D G3DSA:2.40.30.10 350 435 3.7E-10 T 31-10-2018 Y89_6180 3a1b5a61075e76d019801ea1552f09aa 464 Pfam PF16325 Peptidase family U32 C-terminal domain 354 435 7.0E-20 T 31-10-2018 IPR032525 Peptidase family U32, C-terminal Y89_6161 833a7386d93ea7578499f8fa67df4cc3 305 Gene3D G3DSA:2.70.98.10 2 298 5.9E-76 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y89_6161 833a7386d93ea7578499f8fa67df4cc3 305 SUPERFAMILY SSF74650 8 296 5.53E-69 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Y89_6161 833a7386d93ea7578499f8fa67df4cc3 305 PIRSF PIRSF016020 3 299 3.8E-50 T 31-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 Y89_6161 833a7386d93ea7578499f8fa67df4cc3 305 Pfam PF01263 Aldose 1-epimerase 23 298 2.1E-62 T 31-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Y89_6145 93007fe4361aea1400aa258f50cf810f 96 Pfam PF05164 Cell division protein ZapA 9 91 7.8E-13 T 31-10-2018 IPR007838 Cell division protein ZapA-like Y89_6145 93007fe4361aea1400aa258f50cf810f 96 Gene3D G3DSA:1.10.20.30 1 42 3.4E-5 T 31-10-2018 Y89_6145 93007fe4361aea1400aa258f50cf810f 96 SUPERFAMILY SSF102829 10 93 7.32E-16 T 31-10-2018 IPR036192 Cell division protein ZapA-like superfamily Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 365 383 - T 31-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 Gene3D G3DSA:2.150.10.10 265 477 1.2E-203 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 SMART SM00235 78 241 2.0E-29 T 31-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 170 230 1.7E-5 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 Pfam PF08548 Peptidase M10 serralysin C terminal 257 479 4.2E-82 T 31-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 PRINTS PR00313 NodO calcium binding signature 369 377 3.9E-12 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 PRINTS PR00313 NodO calcium binding signature 339 350 3.9E-12 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 PRINTS PR00313 NodO calcium binding signature 360 368 3.9E-12 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 PRINTS PR00313 NodO calcium binding signature 378 387 3.9E-12 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 SUPERFAMILY SSF51120 256 478 6.41E-48 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 SUPERFAMILY SSF55486 14 255 4.73E-71 T 31-10-2018 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 Gene3D G3DSA:3.40.390.10 32 264 1.2E-203 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Y89_4102 70a6d95b8d051d2a77ba114367ce6740 479 PIRSF PIRSF001205 1 479 2.9E-230 T 31-10-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 Y89_2488 6a52b3f42c65dda12539196d95006bf2 362 SUPERFAMILY SSF51679 14 350 2.36E-79 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2488 6a52b3f42c65dda12539196d95006bf2 362 Pfam PF00296 Luciferase-like monooxygenase 21 324 1.9E-75 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_2488 6a52b3f42c65dda12539196d95006bf2 362 Gene3D G3DSA:3.20.20.30 9 357 4.4E-105 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_3169 56f3b1ea9eb56bf85364259ee00e5921 247 SUPERFAMILY SSF88713 5 246 3.85E-94 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_3169 56f3b1ea9eb56bf85364259ee00e5921 247 Pfam PF03746 LamB/YcsF family 6 245 1.0E-96 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_3169 56f3b1ea9eb56bf85364259ee00e5921 247 Gene3D G3DSA:3.20.20.370 1 247 8.0E-101 T 31-10-2018 Y89_3169 56f3b1ea9eb56bf85364259ee00e5921 247 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 247 43.649 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_1197 8ff9a367569280c77e82280c1b4d6031 307 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 12 162 6.2E-15 T 31-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 Y89_1197 8ff9a367569280c77e82280c1b4d6031 307 SUPERFAMILY SSF53474 5 296 5.91E-50 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1197 8ff9a367569280c77e82280c1b4d6031 307 Gene3D G3DSA:3.40.50.1820 8 276 8.0E-80 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1197 8ff9a367569280c77e82280c1b4d6031 307 Gene3D G3DSA:1.10.10.800 138 223 8.0E-80 T 31-10-2018 Y89_3727 117c6b377cedb400487a41c8115a0082 541 SUPERFAMILY SSF58104 232 540 1.18E-76 T 31-10-2018 Y89_3727 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 7.3E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 7.3E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 7.3E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 7.3E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 507 1.0E-44 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 1.5E-23 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y89_3727 117c6b377cedb400487a41c8115a0082 541 SMART SM00304 212 264 2.1E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3727 117c6b377cedb400487a41c8115a0082 541 SMART SM00304 265 317 29.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3727 117c6b377cedb400487a41c8115a0082 541 SMART SM00283 279 540 6.3E-80 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3727 117c6b377cedb400487a41c8115a0082 541 Gene3D G3DSA:1.10.287.950 211 541 3.7E-76 T 31-10-2018 Y89_5776 a170810abb56561f1c869bcc18108523 250 SUPERFAMILY SSF46785 20 89 2.04E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5776 a170810abb56561f1c869bcc18108523 250 Pfam PF07702 UTRA domain 106 243 1.9E-36 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_5776 a170810abb56561f1c869bcc18108523 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 85 9.5E-20 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5776 a170810abb56561f1c869bcc18108523 250 Gene3D G3DSA:1.10.10.10 18 86 5.9E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5776 a170810abb56561f1c869bcc18108523 250 SMART SM00345 26 85 1.1E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5776 a170810abb56561f1c869bcc18108523 250 SMART SM00866 106 243 2.8E-36 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_5776 a170810abb56561f1c869bcc18108523 250 Gene3D G3DSA:3.40.1410.10 104 239 3.9E-37 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_5776 a170810abb56561f1c869bcc18108523 250 SUPERFAMILY SSF64288 73 248 2.2E-45 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_5776 a170810abb56561f1c869bcc18108523 250 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 21 249 1.6E-108 T 31-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 Y89_5776 a170810abb56561f1c869bcc18108523 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.0E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5776 a170810abb56561f1c869bcc18108523 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.0E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5990 5b4c220f15b7c94b6e617bd2db244452 132 SUPERFAMILY SSF54593 12 130 6.74E-21 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5990 5b4c220f15b7c94b6e617bd2db244452 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 126 1.5E-6 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_5990 5b4c220f15b7c94b6e617bd2db244452 132 Gene3D G3DSA:3.10.180.10 3 130 1.9E-30 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5181 3d4b6f937e6b2d962f925828b83181a5 162 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 162 92.22 T 31-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Y89_5181 3d4b6f937e6b2d962f925828b83181a5 162 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 160 4.5E-74 T 31-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Y89_5181 3d4b6f937e6b2d962f925828b83181a5 162 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 6.6E-35 T 31-10-2018 IPR005134 Uncharacterised protein family UPF0114 Y89_5883 114e2919388c21d8d8c6393d3e9e142c 166 Gene3D G3DSA:2.40.70.10 7 136 2.8E-35 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_5883 114e2919388c21d8d8c6393d3e9e142c 166 Pfam PF05618 Putative ATP-dependant zinc protease 9 146 3.5E-48 T 31-10-2018 Y89_5883 114e2919388c21d8d8c6393d3e9e142c 166 SUPERFAMILY SSF50630 9 143 4.12E-41 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_4803 5c72ff02cfcf994dfb93e68508cb4d1a 249 Pfam PF06271 RDD family 39 148 2.4E-20 T 31-10-2018 IPR010432 RDD Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Gene3D G3DSA:1.10.730.10 465 587 2.1E-30 T 31-10-2018 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Pfam PF00750 tRNA synthetases class I (R) 101 457 1.8E-125 T 31-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Pfam PF05746 DALR anticodon binding domain 471 587 1.8E-31 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 SMART SM01016 3 91 2.8E-38 T 31-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 SUPERFAMILY SSF55190 1 103 7.85E-24 T 31-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 SMART SM00836 471 587 8.8E-36 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 1 587 5.5E-167 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 SUPERFAMILY SSF52374 114 464 3.27E-88 T 31-10-2018 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Gene3D G3DSA:3.30.1360.70 2 110 1.0E-27 T 31-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 90 9.2E-25 T 31-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 587 26.626 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 SUPERFAMILY SSF47323 465 587 3.53E-33 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 Gene3D G3DSA:3.40.50.620 113 464 4.1E-107 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 158 171 5.7E-26 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 134 150 5.7E-26 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 119 134 5.7E-26 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 5.7E-26 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Y89_5723 2eb9b88e86d5827421cebf1d94398a50 587 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 127 138 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_2461 a9ffdc98ca470e2c315f42d12471ac5b 206 Pfam PF04356 Protein of unknown function (DUF489) 7 197 1.4E-70 T 31-10-2018 IPR007451 High frequency lysogenization protein HflD Y89_2461 a9ffdc98ca470e2c315f42d12471ac5b 206 SUPERFAMILY SSF101322 4 205 2.09E-73 T 31-10-2018 IPR035932 HflD-like superfamily Y89_2461 a9ffdc98ca470e2c315f42d12471ac5b 206 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 205 33.94 T 31-10-2018 IPR007451 High frequency lysogenization protein HflD Y89_2461 a9ffdc98ca470e2c315f42d12471ac5b 206 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 196 2.0E-93 T 31-10-2018 Y89_2461 a9ffdc98ca470e2c315f42d12471ac5b 206 Gene3D G3DSA:1.10.3890.10 2 205 3.3E-72 T 31-10-2018 IPR035932 HflD-like superfamily Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 SUPERFAMILY SSF90123 8 324 3.14E-45 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 Pfam PF00005 ABC transporter 349 496 6.1E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 Pfam PF00664 ABC transporter transmembrane region 28 283 7.7E-14 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 Gene3D G3DSA:1.20.1560.10 10 317 1.7E-36 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 Gene3D G3DSA:3.40.50.300 325 563 1.3E-67 T 31-10-2018 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 18 556 6.1E-231 T 31-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 SUPERFAMILY SSF52540 324 557 2.22E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1602 a1bb9c8c78179f706a3b57ced2399e47 596 SMART SM00382 358 543 2.3E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF55874 478 624 3.67E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.565.10 474 626 1.6E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF103190 80 204 1.67E-13 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 SMART SM00388 407 475 1.7E-5 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 PIRSF PIRSF036431 9 631 4.9E-206 T 31-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 SMART SM00387 514 624 1.6E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.450.20 60 303 1.7E-62 T 31-10-2018 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 622 3.5E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 SUPERFAMILY SSF47384 396 473 7.85E-9 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF00512 His Kinase A (phospho-acceptor) domain 409 472 4.8E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 581 5.9E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 584 602 5.9E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 608 621 5.9E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 567 5.9E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:3.30.450.20 73 193 1.7E-62 T 31-10-2018 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Gene3D G3DSA:1.10.287.130 383 470 8.5E-18 T 31-10-2018 Y89_4014 be8a3d8d61d17beec622f1afc7b7bf1e 633 Pfam PF02743 Cache domain 53 239 8.3E-20 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 Pfam PF00698 Acyl transferase domain 7 235 5.2E-40 T 31-10-2018 IPR014043 Acyl transferase Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 SUPERFAMILY SSF55048 129 198 3.01E-17 T 31-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 311 2.5E-34 T 31-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 5 290 6.9E-111 T 31-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 PIRSF PIRSF000446 2 311 6.2E-113 T 31-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 SUPERFAMILY SSF52151 5 299 4.01E-72 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 Gene3D G3DSA:3.40.366.10 7 285 1.1E-100 T 31-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Y89_2052 c5f681a5c7ad232e9f0e6f114f899590 312 Gene3D G3DSA:3.30.70.250 126 198 1.1E-100 T 31-10-2018 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 SUPERFAMILY SSF48484 197 685 1.14E-136 T 31-10-2018 IPR036226 Lipoxigenase, C-terminal domain superfamily Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 Gene3D G3DSA:3.10.450.60 250 373 3.5E-141 T 31-10-2018 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 PRINTS PR00087 Lipoxygenase signature 392 412 4.5E-8 T 31-10-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 PRINTS PR00087 Lipoxygenase signature 354 371 4.5E-8 T 31-10-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 PRINTS PR00087 Lipoxygenase signature 372 389 4.5E-8 T 31-10-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 Gene3D G3DSA:1.20.245.10 197 682 3.5E-141 T 31-10-2018 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 ProSitePatterns PS00081 Lipoxygenases iron-binding region signature 2. 399 409 - T 31-10-2018 IPR020834 Lipoxygenase, conserved site GO:0016702|GO:0046872|GO:0055114 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 ProSitePatterns PS00711 Lipoxygenases iron-binding region signature 1. 372 386 - T 31-10-2018 IPR020833 Lipoxygenase, iron binding site GO:0016702|GO:0046872|GO:0055114 Y89_4184 aa33da4eef783d773e17d27830b3fb37 685 Pfam PF00305 Lipoxygenase 226 667 5.0E-60 T 31-10-2018 IPR013819 Lipoxygenase, C-terminal GO:0016702|GO:0046872|GO:0055114 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 17 171 6.9E-30 T 31-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 SUPERFAMILY SSF47144 84 173 3.92E-23 T 31-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 4 172 22.047 T 31-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 89 164 3.5E-16 T 31-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 SMART SM00271 4 69 1.1E-7 T 31-10-2018 IPR001623 DnaJ domain Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 SUPERFAMILY SSF46565 6 77 6.02E-17 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 Gene3D G3DSA:1.10.287.110 2 76 6.1E-19 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 Gene3D G3DSA:1.20.1280.20 85 173 8.4E-22 T 31-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Y89_1215 d86db32bade4d3ae220a4ae78da5ac41 173 Pfam PF00226 DnaJ domain 19 73 5.5E-7 T 31-10-2018 IPR001623 DnaJ domain Y89_4540 1a402148b07d02a15ed807b842e09b59 141 SUPERFAMILY SSF54593 6 131 4.83E-25 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4540 1a402148b07d02a15ed807b842e09b59 141 Gene3D G3DSA:3.10.180.10 4 138 5.2E-38 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4540 1a402148b07d02a15ed807b842e09b59 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 129 5.4E-8 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4820 65cf3c4c57745d153a9e9dad811dab16 102 Pfam PF13467 Ribbon-helix-helix domain 16 83 2.9E-24 T 31-10-2018 IPR027373 Ribbon-helix-helix domain Y89_4820 65cf3c4c57745d153a9e9dad811dab16 102 Gene3D G3DSA:1.10.3990.20 8 100 5.5E-34 T 31-10-2018 IPR038268 Ribbon-helix-helix domain superfamily Y89_0967 6a0e01c16d31f1d82e0931db500a535c 169 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 16 168 81.337 T 31-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Y89_0967 6a0e01c16d31f1d82e0931db500a535c 169 Pfam PF03477 ATP cone domain 67 151 1.5E-13 T 31-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y89_0967 6a0e01c16d31f1d82e0931db500a535c 169 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 16 162 4.6E-72 T 31-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Y89_2293 3405891d050444e1b239802de7c0b14a 260 Gene3D G3DSA:3.90.230.10 1 256 2.7E-103 T 31-10-2018 Y89_2293 3405891d050444e1b239802de7c0b14a 260 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 1.5E-20 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 1.5E-20 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 1.5E-20 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 1.5E-20 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 Pfam PF00557 Metallopeptidase family M24 10 239 3.2E-51 T 31-10-2018 IPR000994 Peptidase M24 Y89_2293 3405891d050444e1b239802de7c0b14a 260 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 38.848 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_2293 3405891d050444e1b239802de7c0b14a 260 SUPERFAMILY SSF55920 1 252 5.63E-88 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like Y89_2293 3405891d050444e1b239802de7c0b14a 260 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 4.2E-94 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_4251 5f2b6cd3d3504aaa2bd349cbf5ab7187 268 Pfam PF02108 Flagellar assembly protein FliH 112 234 5.6E-34 T 31-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Y89_4251 5f2b6cd3d3504aaa2bd349cbf5ab7187 268 SUPERFAMILY SSF160527 141 240 1.11E-7 T 31-10-2018 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 58 342 33.21 T 31-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 Pfam PF17284 Spermidine synthase tetramerisation domain 69 110 3.8E-9 T 31-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 Gene3D G3DSA:2.30.140.10 53 109 2.0E-9 T 31-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 134 147 - T 31-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 SUPERFAMILY SSF53335 58 334 1.11E-68 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 Gene3D G3DSA:3.40.50.150 110 359 7.7E-73 T 31-10-2018 Y89_5386 6baecf65bee7c45f15e9a33c05b35e1a 375 Pfam PF01564 Spermine/spermidine synthase domain 114 287 1.3E-38 T 31-10-2018 Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 9.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 Gene3D G3DSA:3.40.50.720 1 253 1.6E-75 T 31-10-2018 Y89_3054 d722d5f007491c3ab15c0131e316f863 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 249 1.4E-54 T 31-10-2018 Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3054 d722d5f007491c3ab15c0131e316f863 255 SUPERFAMILY SSF51735 12 250 3.23E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4165 a6275b326c5bc829a7421d89c2f96a40 393 Gene3D G3DSA:3.30.1540.10 227 321 1.1E-115 T 31-10-2018 Y89_4165 a6275b326c5bc829a7421d89c2f96a40 393 Pfam PF02515 CoA-transferase family III 5 360 6.1E-101 T 31-10-2018 IPR003673 CoA-transferase family III GO:0003824 Y89_4165 a6275b326c5bc829a7421d89c2f96a40 393 SUPERFAMILY SSF89796 3 392 3.53E-124 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_4165 a6275b326c5bc829a7421d89c2f96a40 393 Gene3D G3DSA:3.40.50.10540 4 386 1.1E-115 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_1312 c0130f6230485be7250744c3770e5ed4 213 Gene3D G3DSA:1.10.10.10 144 213 1.5E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1312 c0130f6230485be7250744c3770e5ed4 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 1.8E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 1.8E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 1.8E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 SUPERFAMILY SSF46894 143 212 1.05E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 SMART SM00421 150 207 2.4E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 Gene3D G3DSA:3.40.50.2300 1 142 5.1E-29 T 31-10-2018 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 Pfam PF00072 Response regulator receiver domain 5 120 4.4E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 205 8.5E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 SUPERFAMILY SSF52172 1 127 2.56E-25 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1312 c0130f6230485be7250744c3770e5ed4 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1312 c0130f6230485be7250744c3770e5ed4 213 SMART SM00448 3 119 2.0E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF50249 2 63 5.71E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:1.10.150.20 67 140 1.7E-26 T 31-10-2018 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:2.40.50.140 1 66 4.2E-29 T 31-10-2018 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Pfam PF07499 RuvA, C-terminal domain 157 200 1.7E-15 T 31-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Pfam PF14520 Helix-hairpin-helix domain 72 130 4.3E-18 T 31-10-2018 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF46929 156 200 1.2E-10 T 31-10-2018 IPR036267 RuvA, C-terminal domain superfamily Y89_4389 4430d897f9d60e4532dc991a68933bff 201 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 199 3.2E-61 T 31-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Pfam PF01330 RuvA N terminal domain 2 62 1.7E-22 T 31-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 201 31.777 T 31-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 SMART SM00278 108 127 0.017 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 SMART SM00278 73 92 0.72 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 Gene3D G3DSA:1.10.8.10 154 201 1.5E-19 T 31-10-2018 Y89_4389 4430d897f9d60e4532dc991a68933bff 201 SUPERFAMILY SSF47781 66 137 2.54E-22 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 SUPERFAMILY SSF75620 12 355 1.23E-134 T 31-10-2018 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 Pfam PF00472 RF-1 domain 216 323 3.5E-42 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 Gene3D G3DSA:3.30.70.1660 113 344 1.8E-97 T 31-10-2018 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 Pfam PF03462 PCRF domain 13 205 2.5E-73 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 9.6E-167 T 31-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 41.408 T 31-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 SMART SM00937 65 180 9.7E-67 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 Y89_5276 6b157e243d4e8eb91bac7103e649cf7f 360 Gene3D G3DSA:3.30.160.20 212 299 1.8E-97 T 31-10-2018 Y89_0255 dd4365875528b88ed95b255b37a12890 288 SUPERFAMILY SSF46689 241 287 8.8E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0255 dd4365875528b88ed95b255b37a12890 288 Gene3D G3DSA:1.10.10.60 184 288 7.3E-25 T 31-10-2018 Y89_0255 dd4365875528b88ed95b255b37a12890 288 Pfam PF12833 Helix-turn-helix domain 208 286 8.4E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0255 dd4365875528b88ed95b255b37a12890 288 Pfam PF02311 AraC-like ligand binding domain 32 161 4.3E-8 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_0255 dd4365875528b88ed95b255b37a12890 288 SUPERFAMILY SSF51182 40 150 7.65E-12 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0255 dd4365875528b88ed95b255b37a12890 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 269 8.2E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0255 dd4365875528b88ed95b255b37a12890 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 269 285 8.2E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0255 dd4365875528b88ed95b255b37a12890 288 SMART SM00342 202 285 3.7E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0255 dd4365875528b88ed95b255b37a12890 288 Gene3D G3DSA:2.60.120.10 27 106 5.3E-8 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3047 e9d1e31c4474154e2a34d181c24b6de6 474 Gene3D G3DSA:3.40.309.10 249 439 8.4E-174 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_3047 e9d1e31c4474154e2a34d181c24b6de6 474 Pfam PF00171 Aldehyde dehydrogenase family 14 470 2.4E-159 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3047 e9d1e31c4474154e2a34d181c24b6de6 474 SUPERFAMILY SSF53720 2 472 1.7E-150 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_3047 e9d1e31c4474154e2a34d181c24b6de6 474 Gene3D G3DSA:3.40.605.10 21 464 8.4E-174 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_3047 e9d1e31c4474154e2a34d181c24b6de6 474 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 SUPERFAMILY SSF53850 20 348 3.23E-78 T 31-10-2018 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PIRSF PIRSF019574 4 352 9.0E-98 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 Pfam PF13416 Bacterial extracellular solute-binding protein 36 310 2.5E-27 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_0313 70f1ad2c0da8d91864761584534ed532 353 Gene3D G3DSA:3.40.190.10 126 346 7.2E-105 T 31-10-2018 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 117 133 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 84 97 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 147 161 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 170 189 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 296 322 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 207 226 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 251 270 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 1.1E-38 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0313 70f1ad2c0da8d91864761584534ed532 353 Gene3D G3DSA:3.40.190.10 23 320 7.2E-105 T 31-10-2018 Y89_2562 f2046ef3eca7d2f4560fc2f69bde1580 306 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 261 6.0E-7 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_2562 f2046ef3eca7d2f4560fc2f69bde1580 306 Gene3D G3DSA:3.10.180.10 135 293 5.9E-31 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2562 f2046ef3eca7d2f4560fc2f69bde1580 306 Gene3D G3DSA:3.10.180.10 1 130 2.2E-37 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2562 f2046ef3eca7d2f4560fc2f69bde1580 306 SUPERFAMILY SSF54593 1 263 1.98E-27 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1336 225d6706996735e0176149aa1408d404 738 Gene3D G3DSA:3.40.1110.10 442 562 7.1E-83 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00941 Cadmium-transporting ATPase signature 215 235 1.6E-10 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00941 Cadmium-transporting ATPase signature 296 312 1.6E-10 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00941 Cadmium-transporting ATPase signature 315 329 1.6E-10 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 Pfam PF00702 haloacid dehalogenase-like hydrolase 429 644 2.6E-41 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 Pfam PF00122 E1-E2 ATPase 231 410 1.9E-54 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 180 733 4.2E-175 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 433 439 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 Gene3D G3DSA:3.40.50.1000 412 683 7.1E-83 T 31-10-2018 IPR023214 HAD superfamily Y89_1336 225d6706996735e0176149aa1408d404 738 SUPERFAMILY SSF81653 233 330 2.48E-22 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 431 445 6.4E-21 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 280 294 6.4E-21 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 577 587 6.4E-21 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 630 649 6.4E-21 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 654 666 6.4E-21 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 SUPERFAMILY SSF55008 39 109 6.03E-10 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_1336 225d6706996735e0176149aa1408d404 738 SUPERFAMILY SSF56784 430 730 4.83E-52 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1336 225d6706996735e0176149aa1408d404 738 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 530 706 1.4E-38 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 203 456 6.5E-37 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_1336 225d6706996735e0176149aa1408d404 738 Gene3D G3DSA:2.70.150.20 219 334 3.0E-34 T 31-10-2018 Y89_1336 225d6706996735e0176149aa1408d404 738 SUPERFAMILY SSF81665 181 418 3.27E-14 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Gene3D G3DSA:3.30.450.20 247 366 3.5E-17 T 31-10-2018 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SMART SM00387 489 595 7.3E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 491 594 1.1E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SMART SM00091 258 323 1.2E-5 T 31-10-2018 IPR000014 PAS domain Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Gene3D G3DSA:3.30.565.10 448 595 8.5E-46 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SUPERFAMILY SSF47384 360 443 1.22E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 540 5.1E-19 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 581 594 5.1E-19 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 557 575 5.1E-19 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 554 5.1E-19 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB 42 158 6.4E-38 T 31-10-2018 IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SMART SM00388 375 443 1.1E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Pfam PF00512 His Kinase A (phospho-acceptor) domain 376 443 1.2E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Gene3D G3DSA:1.20.120.880 39 168 2.4E-70 T 31-10-2018 IPR038320 KinB, N-terminal domain superfamily Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Gene3D G3DSA:1.10.287.130 367 447 3.9E-17 T 31-10-2018 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Gene3D G3DSA:1.10.8.500 194 245 1.3E-6 T 31-10-2018 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SUPERFAMILY SSF55874 432 595 3.67E-46 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Pfam PF08448 PAS fold 264 370 8.9E-11 T 31-10-2018 IPR013656 PAS fold-4 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 373 9.9E-8 T 31-10-2018 IPR000014 PAS domain Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SUPERFAMILY SSF55785 246 367 1.68E-13 T 31-10-2018 IPR035965 PAS domain superfamily Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SMART SM00304 195 247 4.1E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 SUPERFAMILY SSF158472 195 245 3.79E-8 T 31-10-2018 Y89_6224 70f32d2d8f12ddb27272a36e2f3de32e 595 Pfam PF00672 HAMP domain 195 244 2.7E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 Gene3D G3DSA:3.30.365.10 34 607 2.6E-60 T 31-10-2018 Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 SUPERFAMILY SSF56003 264 942 7.2E-123 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 SUPERFAMILY SSF54665 52 174 3.0E-11 T 31-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 Gene3D G3DSA:3.30.365.10 760 942 4.5E-40 T 31-10-2018 Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 265 602 1.3E-52 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_5230 e5c408b7d0b7575df1419fd02a514f58 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 690 881 1.6E-16 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_2040 7b60f349e2edc62aff1b7b793a8b2503 61 Pfam PF03966 Trm112p-like protein 2 41 4.1E-10 T 31-10-2018 IPR005651 Trm112-like Y89_2040 7b60f349e2edc62aff1b7b793a8b2503 61 Gene3D G3DSA:2.20.25.10 8 61 3.4E-24 T 31-10-2018 Y89_2040 7b60f349e2edc62aff1b7b793a8b2503 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.286 T 31-10-2018 IPR038053 Uncharacterised protein family UPF0434 Y89_2040 7b60f349e2edc62aff1b7b793a8b2503 61 SUPERFAMILY SSF158997 1 54 1.05E-20 T 31-10-2018 Y89_5590 e1ef486465ae82017fe70a44f2dab472 275 Gene3D G3DSA:3.40.50.620 1 275 8.2E-86 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5590 e1ef486465ae82017fe70a44f2dab472 275 Pfam PF02540 NAD synthase 28 272 8.4E-65 T 31-10-2018 IPR022310 NAD/GMP synthase Y89_5590 e1ef486465ae82017fe70a44f2dab472 275 SUPERFAMILY SSF52402 20 272 3.45E-77 T 31-10-2018 Y89_5590 e1ef486465ae82017fe70a44f2dab472 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 23 275 50.743 T 31-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 Y89_5590 e1ef486465ae82017fe70a44f2dab472 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 27 273 1.0E-67 T 31-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Y89_0337 c34935781370e886adff50597ecdfa01 464 Gene3D G3DSA:3.30.70.2190 217 333 2.2E-23 T 31-10-2018 Y89_0337 c34935781370e886adff50597ecdfa01 464 Gene3D G3DSA:3.30.465.10 95 215 1.1E-38 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_0337 c34935781370e886adff50597ecdfa01 464 SUPERFAMILY SSF55103 222 463 1.54E-60 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_0337 c34935781370e886adff50597ecdfa01 464 Gene3D G3DSA:1.10.45.10 422 462 9.1E-17 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_0337 c34935781370e886adff50597ecdfa01 464 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 461 8.3E-66 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y89_0337 c34935781370e886adff50597ecdfa01 464 Gene3D G3DSA:3.30.70.2740 336 421 4.2E-28 T 31-10-2018 Y89_0337 c34935781370e886adff50597ecdfa01 464 Pfam PF01565 FAD binding domain 41 179 6.9E-37 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_0337 c34935781370e886adff50597ecdfa01 464 Gene3D G3DSA:3.30.43.10 1 92 7.0E-25 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Y89_0337 c34935781370e886adff50597ecdfa01 464 SUPERFAMILY SSF56176 4 217 9.81E-65 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_2291 fd5993183d1ca45a8d5ac6a9890dad36 237 SUPERFAMILY SSF54060 23 223 6.36E-83 T 31-10-2018 Y89_2291 fd5993183d1ca45a8d5ac6a9890dad36 237 Pfam PF04231 Endonuclease I 25 221 9.8E-38 T 31-10-2018 IPR007346 Endonuclease I GO:0004518 Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 Gene3D G3DSA:3.10.129.10 34 281 1.7E-65 T 31-10-2018 Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 SUPERFAMILY SSF54637 174 260 2.01E-18 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 Pfam PF01575 MaoC like domain 180 254 1.8E-12 T 31-10-2018 IPR002539 MaoC-like dehydratase domain Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 PRINTS PR01483 Fatty acid synthase signature 181 203 6.8E-5 T 31-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 PRINTS PR01483 Fatty acid synthase signature 203 224 6.8E-5 T 31-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y89_5401 5c601ff996317c6ffb6d328f273a2777 285 SUPERFAMILY SSF54637 43 153 4.47E-6 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5616 71d511986a50cf83d581035caa51df89 633 SUPERFAMILY SSF54211 195 334 8.34E-41 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5616 71d511986a50cf83d581035caa51df89 633 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 31-10-2018 IPR014762 DNA mismatch repair, conserved site Y89_5616 71d511986a50cf83d581035caa51df89 633 SUPERFAMILY SSF55874 5 206 1.83E-54 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5616 71d511986a50cf83d581035caa51df89 633 Gene3D G3DSA:3.30.230.10 221 333 3.6E-39 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5616 71d511986a50cf83d581035caa51df89 633 SMART SM00853 446 589 4.9E-57 T 31-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Y89_5616 71d511986a50cf83d581035caa51df89 633 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 5 629 29.84 T 31-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Y89_5616 71d511986a50cf83d581035caa51df89 633 Pfam PF08676 MutL C terminal dimerisation domain 442 589 2.0E-51 T 31-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Y89_5616 71d511986a50cf83d581035caa51df89 633 SUPERFAMILY SSF118116 442 631 2.62E-62 T 31-10-2018 IPR037198 MutL, C-terminal domain superfamily Y89_5616 71d511986a50cf83d581035caa51df89 633 Gene3D G3DSA:3.30.565.10 6 220 1.4E-69 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5616 71d511986a50cf83d581035caa51df89 633 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 6 314 3.3E-100 T 31-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 Y89_5616 71d511986a50cf83d581035caa51df89 633 SMART SM01340 216 334 8.4E-63 T 31-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Y89_5616 71d511986a50cf83d581035caa51df89 633 Gene3D G3DSA:3.30.1370.100 489 584 5.1E-58 T 31-10-2018 Y89_5616 71d511986a50cf83d581035caa51df89 633 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 126 7.1E-9 T 31-10-2018 Y89_5616 71d511986a50cf83d581035caa51df89 633 Gene3D G3DSA:2.30.42.20 448 626 5.1E-58 T 31-10-2018 Y89_5616 71d511986a50cf83d581035caa51df89 633 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 333 1.4E-40 T 31-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Y89_2277 c85e9e793ff00086a009a2d82f123802 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.4E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2277 c85e9e793ff00086a009a2d82f123802 295 SUPERFAMILY SSF46785 5 88 1.84E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2277 c85e9e793ff00086a009a2d82f123802 295 SUPERFAMILY SSF53850 89 293 2.17E-26 T 31-10-2018 Y89_2277 c85e9e793ff00086a009a2d82f123802 295 Gene3D G3DSA:3.40.190.290 104 292 2.4E-23 T 31-10-2018 Y89_2277 c85e9e793ff00086a009a2d82f123802 295 Gene3D G3DSA:1.10.10.10 1 86 3.5E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2277 c85e9e793ff00086a009a2d82f123802 295 Pfam PF03466 LysR substrate binding domain 88 292 1.0E-25 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Pfam PF01627 Hpt domain 11 101 1.3E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Gene3D G3DSA:1.20.120.160 3 133 1.2E-24 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Gene3D G3DSA:3.40.50.12740 645 768 4.3E-33 T 31-10-2018 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 465 3.4E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 484 3.4E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 3.4E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SUPERFAMILY SSF47226 8 118 3.14E-24 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SUPERFAMILY SSF52172 644 764 4.7E-31 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SMART SM00387 344 487 9.9E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SUPERFAMILY SSF55874 303 485 3.41E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Pfam PF01584 CheW-like domain 493 621 1.4E-18 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Gene3D G3DSA:2.40.50.180 510 573 6.0E-27 T 31-10-2018 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Gene3D G3DSA:2.30.30.40 487 614 6.0E-27 T 31-10-2018 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SMART SM00448 646 760 4.4E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Pfam PF00072 Response regulator receiver domain 648 759 1.5E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SMART SM00260 479 618 3.0E-11 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SUPERFAMILY SSF50341 486 618 5.89E-25 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 SMART SM00073 8 105 3.4E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 486 7.0E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1322 f13707e660abdcbafa1c866c421d92fe 769 Gene3D G3DSA:3.30.565.10 298 486 1.9E-51 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3925 b0581fee97fbeeff6177a8fa3e2cfb7d 203 SMART SM01144 2 187 1.1E-65 T 31-10-2018 IPR005636 DTW Y89_3925 b0581fee97fbeeff6177a8fa3e2cfb7d 203 Pfam PF03942 DTW domain 5 182 1.4E-48 T 31-10-2018 IPR005636 DTW Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 639 2.7E-238 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 629 642 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 3.8E-65 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 Pfam PF01578 Cytochrome C assembly protein 89 296 7.2E-56 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.6E-97 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_3859 67e62be752845e8f0a430f67eb3e2fa9 657 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 636 5.0E-128 T 31-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Y89_1266 98fd1691803168cca5d90ff96900f552 570 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 398 415 - T 31-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y89_1266 98fd1691803168cca5d90ff96900f552 570 Gene3D G3DSA:3.30.1360.60 381 461 3.2E-22 T 31-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Y89_1266 98fd1691803168cca5d90ff96900f552 570 Gene3D G3DSA:3.30.1360.60 490 570 3.1E-10 T 31-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Y89_1266 98fd1691803168cca5d90ff96900f552 570 SUPERFAMILY SSF55604 494 567 1.57E-8 T 31-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Y89_1266 98fd1691803168cca5d90ff96900f552 570 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 7 457 2.4E-176 T 31-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 Y89_1266 98fd1691803168cca5d90ff96900f552 570 Pfam PF02378 Phosphotransferase system, EIIC 14 303 2.8E-72 T 31-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Y89_1266 98fd1691803168cca5d90ff96900f552 570 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 360 444 8.1E-15 T 31-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Y89_1266 98fd1691803168cca5d90ff96900f552 570 SUPERFAMILY SSF55604 385 459 3.4E-16 T 31-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Y89_1266 98fd1691803168cca5d90ff96900f552 570 Pfam PF00367 phosphotransferase system, EIIB 496 527 1.2E-4 T 31-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y89_1266 98fd1691803168cca5d90ff96900f552 570 Pfam PF00367 phosphotransferase system, EIIB 390 418 9.0E-9 T 31-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 SUPERFAMILY SSF46689 235 285 8.96E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 Pfam PF12833 Helix-turn-helix domain 204 279 5.2E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 Pfam PF06719 AraC-type transcriptional regulator N-terminus 20 169 2.8E-39 T 31-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 Gene3D G3DSA:1.10.10.60 179 286 1.1E-24 T 31-10-2018 Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 SMART SM00342 198 281 2.7E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3969 fe8621cf7e75b7224f9baadb52d6cc4c 303 SUPERFAMILY SSF46689 183 231 2.46E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0960 6e371f12f10eaa8c8b5b55c45e38016a 421 Pfam PF12704 MacB-like periplasmic core domain 19 261 1.1E-12 T 31-10-2018 IPR025857 MacB-like periplasmic core domain Y89_0960 6e371f12f10eaa8c8b5b55c45e38016a 421 Pfam PF02687 FtsX-like permease family 319 412 1.3E-13 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y89_2410 ad2603a215e7e70400923cc14765ec62 575 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 388 402 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_2410 ad2603a215e7e70400923cc14765ec62 575 SUPERFAMILY SSF52540 177 573 4.75E-96 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2410 ad2603a215e7e70400923cc14765ec62 575 Gene3D G3DSA:3.40.50.300 296 575 1.7E-107 T 31-10-2018 Y89_2410 ad2603a215e7e70400923cc14765ec62 575 SUPERFAMILY SSF160246 15 157 3.66E-20 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_2410 ad2603a215e7e70400923cc14765ec62 575 Pfam PF00437 Type II/IV secretion system protein 195 460 1.1E-80 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_2410 ad2603a215e7e70400923cc14765ec62 575 SMART SM00382 321 442 1.2E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2410 ad2603a215e7e70400923cc14765ec62 575 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 52 158 1.9E-11 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal Y89_2410 ad2603a215e7e70400923cc14765ec62 575 Gene3D G3DSA:3.30.450.90 163 292 6.1E-46 T 31-10-2018 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.90.190.20 330 484 9.7E-55 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 479 35.031 T 31-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Pfam PF01225 Mur ligase family, catalytic domain 18 94 6.1E-12 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y89_4906 da32671baca46154d92bd53fed7cb036 487 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 17 479 2.2E-155 T 31-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Y89_4906 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF63418 11 95 6.28E-21 T 31-10-2018 IPR035911 MurE/MurF, N-terminal Y89_4906 da32671baca46154d92bd53fed7cb036 487 Pfam PF08245 Mur ligase middle domain 106 306 2.3E-51 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.40.1190.10 97 329 5.6E-80 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4906 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF53623 97 326 6.41E-77 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Gene3D G3DSA:3.40.1390.10 3 96 5.5E-23 T 31-10-2018 Y89_4906 da32671baca46154d92bd53fed7cb036 487 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 412 4.8E-22 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Y89_4906 da32671baca46154d92bd53fed7cb036 487 SUPERFAMILY SSF53244 329 480 5.95E-47 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_2290 722c37681123e4c405adbe8a9b303d65 172 SUPERFAMILY SSF50199 24 165 3.01E-16 T 31-10-2018 Y89_2290 722c37681123e4c405adbe8a9b303d65 172 SMART SM00318 24 160 2.0E-4 T 31-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Y89_2290 722c37681123e4c405adbe8a9b303d65 172 Gene3D G3DSA:2.40.50.90 16 166 1.3E-15 T 31-10-2018 IPR035437 SNase-like, OB-fold superfamily Y89_2290 722c37681123e4c405adbe8a9b303d65 172 Pfam PF00565 Staphylococcal nuclease homologue 61 159 5.9E-7 T 31-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Y89_0132 37501c03dab04487391f9cd8361561d9 244 SMART SM00895 89 212 5.5E-16 T 31-10-2018 IPR011711 GntR, C-terminal Y89_0132 37501c03dab04487391f9cd8361561d9 244 SUPERFAMILY SSF48008 87 217 1.7E-21 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0132 37501c03dab04487391f9cd8361561d9 244 Gene3D G3DSA:1.10.10.10 3 81 3.9E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0132 37501c03dab04487391f9cd8361561d9 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 70 3.9E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0132 37501c03dab04487391f9cd8361561d9 244 Pfam PF07729 FCD domain 89 210 7.9E-17 T 31-10-2018 IPR011711 GntR, C-terminal Y89_0132 37501c03dab04487391f9cd8361561d9 244 Gene3D G3DSA:1.20.120.530 82 219 4.8E-21 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0132 37501c03dab04487391f9cd8361561d9 244 SUPERFAMILY SSF46785 16 88 5.55E-9 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 SUPERFAMILY SSF53850 82 285 4.89E-34 T 31-10-2018 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 Gene3D G3DSA:3.40.190.290 86 290 1.8E-32 T 31-10-2018 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 SUPERFAMILY SSF46785 3 105 6.96E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 61 6.4E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 3.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 3.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 3.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 Gene3D G3DSA:1.10.10.10 1 85 4.0E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4541 f23f165b2a8798de98b69b17a73cfdd2 294 Pfam PF03466 LysR substrate binding domain 81 283 2.5E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6228 810dac3a7fe294d9c8fd1163761250c9 292 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 38 264 1.6E-11 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_6228 810dac3a7fe294d9c8fd1163761250c9 292 Gene3D G3DSA:3.60.10.10 34 277 6.0E-36 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_6228 810dac3a7fe294d9c8fd1163761250c9 292 SUPERFAMILY SSF56219 28 277 1.23E-33 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_0998 60721cfc527b5a3edc9219e57027090c 153 Gene3D G3DSA:3.40.630.30 1 141 1.2E-37 T 31-10-2018 Y89_0998 60721cfc527b5a3edc9219e57027090c 153 SUPERFAMILY SSF55729 1 146 1.51E-37 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0998 60721cfc527b5a3edc9219e57027090c 153 Pfam PF00583 Acetyltransferase (GNAT) family 32 135 1.2E-13 T 31-10-2018 IPR000182 GNAT domain Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 SUPERFAMILY SSF51717 3 269 3.14E-67 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 Pfam PF00809 Pterin binding enzyme 9 252 2.7E-69 T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 8 23 - T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 Gene3D G3DSA:3.20.20.20 1 274 4.7E-68 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 8 266 5.1E-82 T 31-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Y89_4701 3e5e6add9941991f3d9fff1a53d37dd3 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 42 55 - T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_0775 11101dbfa1b79ca4a696cbadbf89c886 116 SUPERFAMILY SSF53137 4 114 3.71E-52 T 31-10-2018 Y89_0775 11101dbfa1b79ca4a696cbadbf89c886 116 Gene3D G3DSA:3.30.420.100 3 116 7.6E-43 T 31-10-2018 Y89_0775 11101dbfa1b79ca4a696cbadbf89c886 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 2.9E-42 T 31-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0775 11101dbfa1b79ca4a696cbadbf89c886 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 4 116 1.1E-42 T 31-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0775 11101dbfa1b79ca4a696cbadbf89c886 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 27.195 T 31-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 SUPERFAMILY SSF160544 245 352 8.89E-41 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 2.9E-35 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 2.9E-35 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 2.9E-35 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 2.9E-35 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 2.9E-35 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 Gene3D G3DSA:3.40.1690.10 219 359 1.0E-55 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 354 7.8E-125 T 31-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 Y89_3890 e9eed82a3d7ba86e31884a27c9b320b9 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 3.9E-126 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_6227 3b44a11f3db57a4359ef986ce3aa26ea 671 SUPERFAMILY SSF55073 516 669 2.04E-48 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_6227 3b44a11f3db57a4359ef986ce3aa26ea 671 Pfam PF00990 Diguanylate cyclase, GGDEF domain 511 667 1.0E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_6227 3b44a11f3db57a4359ef986ce3aa26ea 671 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 509 670 6.9E-48 T 31-10-2018 IPR000160 GGDEF domain Y89_6227 3b44a11f3db57a4359ef986ce3aa26ea 671 Gene3D G3DSA:3.30.70.270 505 671 3.4E-58 T 31-10-2018 Y89_6227 3b44a11f3db57a4359ef986ce3aa26ea 671 SMART SM00267 501 671 1.7E-56 T 31-10-2018 IPR000160 GGDEF domain Y89_1136 e4ba4d3af2b595a13c763b8ff12e7d7d 240 SUPERFAMILY SSF161098 37 221 4.32E-33 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1136 e4ba4d3af2b595a13c763b8ff12e7d7d 240 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 230 7.8E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1136 e4ba4d3af2b595a13c763b8ff12e7d7d 240 Gene3D G3DSA:1.10.3720.10 38 232 3.7E-26 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 Gene3D G3DSA:3.30.70.20 452 546 9.5E-38 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF54373 212 307 2.86E-37 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 447 548 1.9E-50 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 Gene3D G3DSA:3.50.50.60 7 387 8.2E-199 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 1.7E-7 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 195 9.4E-7 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 9.4E-7 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 Gene3D G3DSA:3.30.9.90 79 451 8.2E-199 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF54862 451 551 9.11E-29 T 31-10-2018 Y89_2067 6088bd3454162d8714711ae6cae2ee06 551 SUPERFAMILY SSF51905 5 449 5.19E-58 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF04055 Radical SAM superfamily 145 322 7.6E-27 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Gene3D G3DSA:3.80.30.20 137 379 1.2E-70 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 SMART SM00729 139 365 2.6E-51 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 SUPERFAMILY SSF102114 109 370 3.53E-53 T 31-10-2018 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 7 437 6.7E-104 T 31-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 436 2.0E-178 T 31-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Gene3D G3DSA:2.40.50.140 380 440 2.9E-23 T 31-10-2018 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 6 439 61.878 T 31-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF01938 TRAM domain 377 440 1.5E-5 T 31-10-2018 IPR002792 TRAM domain Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Gene3D G3DSA:3.40.50.12160 7 127 7.1E-29 T 31-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 143 163 - T 31-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y89_4443 95434972f74fc1c699aff7f0a4c35f89 440 Pfam PF00919 Uncharacterized protein family UPF0004 7 98 9.4E-21 T 31-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 SUPERFAMILY SSF88946 18 94 2.12E-12 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 Pfam PF08281 Sigma-70, region 4 118 168 1.7E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 SUPERFAMILY SSF88659 103 173 6.73E-13 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 Pfam PF04542 Sigma-70 region 2 20 83 8.8E-12 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 Gene3D G3DSA:1.10.1740.10 7 86 2.0E-8 T 31-10-2018 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 169 8.7E-21 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2773 0d2a8aae127d748a808fb62c44ca2e2c 187 Gene3D G3DSA:1.10.10.10 100 176 1.3E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 Pfam PF13175 AAA ATPase domain 7 51 9.2E-11 T 31-10-2018 Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 Gene3D G3DSA:3.40.50.300 167 351 4.7E-9 T 31-10-2018 Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 PIRSF PIRSF029347 5 139 1.3E-15 T 31-10-2018 IPR014555 RecF-like Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 PIRSF PIRSF029347 162 366 5.2E-20 T 31-10-2018 IPR014555 RecF-like Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 SUPERFAMILY SSF52540 6 331 9.0E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 Gene3D G3DSA:3.40.50.300 6 128 2.6E-12 T 31-10-2018 Y89_0140 d2495c5259d748f313b8f2b4614a414a 402 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 240 330 3.1E-18 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0013 f1df839f341404e7cbaf87d47a266b10 568 SUPERFAMILY SSF46626 322 568 6.12E-15 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5647 8c77c390895472920fc47594c8aaf098 536 SUPERFAMILY SSF52518 6 182 5.89E-53 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5647 8c77c390895472920fc47594c8aaf098 536 SUPERFAMILY SSF52518 363 534 3.75E-42 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5647 8c77c390895472920fc47594c8aaf098 536 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 327 3.7E-26 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_5647 8c77c390895472920fc47594c8aaf098 536 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 176 1.8E-54 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_5647 8c77c390895472920fc47594c8aaf098 536 Gene3D G3DSA:3.40.50.970 361 535 6.6E-40 T 31-10-2018 Y89_5647 8c77c390895472920fc47594c8aaf098 536 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 420 439 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_5647 8c77c390895472920fc47594c8aaf098 536 SUPERFAMILY SSF52467 161 354 9.05E-38 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_5647 8c77c390895472920fc47594c8aaf098 536 Gene3D G3DSA:3.40.50.1220 191 354 4.0E-40 T 31-10-2018 Y89_5647 8c77c390895472920fc47594c8aaf098 536 Gene3D G3DSA:3.40.50.970 1 189 7.9E-64 T 31-10-2018 Y89_5647 8c77c390895472920fc47594c8aaf098 536 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 391 529 9.1E-28 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 31-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 SUPERFAMILY SSF53178 5 191 1.57E-67 T 31-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 31-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 190 3.3E-62 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 189 7.8E-52 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 34.945 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Y89_5283 9bdb13d2d4f8b63348e9de38646de5aa 194 Gene3D G3DSA:3.40.50.1470 1 194 9.2E-74 T 31-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 SUPERFAMILY SSF53474 8 300 8.85E-44 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 Gene3D G3DSA:3.40.50.1820 9 302 2.1E-41 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 401 412 4.1E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 455 463 4.1E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 475 494 4.1E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 462 490 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 Pfam PF00106 short chain dehydrogenase 326 516 2.3E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 Pfam PF00561 alpha/beta hydrolase fold 37 121 7.4E-17 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 Gene3D G3DSA:3.40.50.720 315 581 1.2E-69 T 31-10-2018 Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 SUPERFAMILY SSF51735 321 587 2.56E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 475 494 1.0E-20 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 496 513 1.0E-20 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 449 465 1.0E-20 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 327 344 1.0E-20 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1685 7a99b938724a9f8507b4df6f1dc420db 592 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 401 412 1.0E-20 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Pfam PF03952 Enolase, N-terminal domain 4 134 3.1E-58 T 31-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 367 384 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 338 352 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PRINTS PR00148 Enolase signature 315 326 1.2E-44 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SMART SM01193 4 134 2.0E-92 T 31-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SUPERFAMILY SSF51604 143 427 3.14E-129 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 31-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SMART SM01192 143 429 1.2E-221 T 31-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 1.7E-205 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 PIRSF PIRSF001400 1 429 1.2E-192 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 SUPERFAMILY SSF54826 3 138 1.69E-56 T 31-10-2018 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Gene3D G3DSA:3.30.390.10 1 127 2.9E-54 T 31-10-2018 IPR029017 Enolase-like, N-terminal Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Hamap MF_00318 Enolase [eno]. 2 415 44.578 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 426 1.9E-137 T 31-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_1391 f8037c3f3a86fdfb4f6e6b4ae5c16036 429 Gene3D G3DSA:3.20.20.120 128 429 4.2E-136 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 107 125 - T 31-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 SUPERFAMILY SSF51419 75 352 1.23E-67 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:3.20.20.10 76 355 3.8E-224 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PIRSF PIRSF001336 1 636 2.9E-250 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 12 636 41.846 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 SUPERFAMILY SSF50621 459 567 1.81E-6 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 468 489 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 546 567 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 153 168 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 179 200 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 493 518 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 203 225 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 99 113 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 75 90 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01180 Arginine decarboxylase signature 330 347 5.1E-69 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 282 297 - T 31-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 100 350 1.5E-43 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:1.20.58.930 372 464 3.8E-224 T 31-10-2018 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 130 142 2.4E-16 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 2.4E-16 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 125 2.4E-16 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 246 259 2.4E-16 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 546 559 2.4E-16 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 Gene3D G3DSA:2.40.37.10 23 570 3.8E-224 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5508 2b3b664b3ddbaa450286e18ab7433d74 636 TIGRFAM TIGR01273 speA: arginine decarboxylase 14 636 3.9E-276 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Y89_5749 c3861ce16f4fe42fee4fd296d8649e69 861 SUPERFAMILY SSF53448 247 533 8.06E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5749 c3861ce16f4fe42fee4fd296d8649e69 861 Pfam PF00535 Glycosyl transferase family 2 249 431 1.6E-23 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_5749 c3861ce16f4fe42fee4fd296d8649e69 861 Gene3D G3DSA:3.90.550.10 245 471 3.3E-15 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5749 c3861ce16f4fe42fee4fd296d8649e69 861 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 72 748 52.273 T 31-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 Y89_0294 5ff4a52d448c6464782087b40d924800 171 Pfam PF06127 Protein of unknown function (DUF962) 1 143 1.4E-27 T 31-10-2018 IPR009305 Protein of unknown function DUF962 Y89_4380 0c90616d46490e30159ae587bb496446 215 SUPERFAMILY SSF102114 27 106 1.12E-14 T 31-10-2018 Y89_4380 0c90616d46490e30159ae587bb496446 215 Pfam PF13394 4Fe-4S single cluster domain 26 107 1.1E-10 T 31-10-2018 Y89_4380 0c90616d46490e30159ae587bb496446 215 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 5 212 35.977 T 31-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Y89_4380 0c90616d46490e30159ae587bb496446 215 Gene3D G3DSA:3.20.20.70 4 209 1.8E-36 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4380 0c90616d46490e30159ae587bb496446 215 PIRSF PIRSF000370 3 215 2.3E-67 T 31-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Y89_4380 0c90616d46490e30159ae587bb496446 215 Pfam PF04055 Radical SAM superfamily 28 163 1.8E-15 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_4380 0c90616d46490e30159ae587bb496446 215 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 5 215 2.9E-111 T 31-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Y89_5233 c0b3a32bbbbec427581b32fc2dbdd896 568 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 208 528 1.7E-21 T 31-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y89_5233 c0b3a32bbbbec427581b32fc2dbdd896 568 Pfam PF08479 POTRA domain, ShlB-type 71 146 2.9E-21 T 31-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y89_5233 c0b3a32bbbbec427581b32fc2dbdd896 568 Gene3D G3DSA:2.40.160.50 184 565 8.1E-70 T 31-10-2018 Y89_5233 c0b3a32bbbbec427581b32fc2dbdd896 568 Gene3D G3DSA:3.10.20.310 59 146 9.7E-18 T 31-10-2018 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 ProSitePatterns PS00622 LuxR-type HTH domain signature. 191 218 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 Gene3D G3DSA:3.30.450.80 1 172 4.6E-70 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 SMART SM00421 174 231 5.6E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 231 1.8E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 SUPERFAMILY SSF75516 9 160 2.62E-36 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 SUPERFAMILY SSF46894 170 237 2.69E-15 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 4.3E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 4.3E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 4.3E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 Pfam PF03472 Autoinducer binding domain 18 158 8.1E-37 T 31-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y89_3909 7991c7ecf42bb9643f2762431bcce511 239 Gene3D G3DSA:1.10.10.10 173 238 7.2E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 PRINTS PR00397 Sirohaem Fe-binding site signature 412 430 9.0E-5 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 PRINTS PR00397 Sirohaem Fe-binding site signature 458 476 9.0E-5 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 Gene3D G3DSA:3.30.413.10 410 557 1.9E-32 T 31-10-2018 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 SUPERFAMILY SSF56014 120 286 1.18E-46 T 31-10-2018 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 49 109 3.5E-18 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 347 398 4.4E-16 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 415 555 3.0E-12 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 SUPERFAMILY SSF55124 1 126 5.72E-31 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 SUPERFAMILY SSF55124 253 423 5.56E-28 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 7.6E-39 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_0892 3f6d4255e7b85478c8195aef42d3fc46 557 SUPERFAMILY SSF56014 409 554 2.49E-41 T 31-10-2018 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 Gene3D G3DSA:3.30.1460.10 1 116 6.0E-41 T 31-10-2018 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PIRSF PIRSF011271 1 116 2.9E-65 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 SUPERFAMILY SSF69635 5 115 6.67E-40 T 31-10-2018 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 Pfam PF05932 Tir chaperone protein (CesT) family 8 116 1.5E-25 T 31-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 30 51 5.9E-51 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 5 28 5.9E-51 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 60 76 5.9E-51 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 79 97 5.9E-51 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_1182 03f5e5c1d7417bfe948147d106a91893 116 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 97 115 5.9E-51 T 31-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 Y89_5138 44a690ee29ccacfa0cdf749210597f43 90 Gene3D G3DSA:1.10.8.1250 10 89 3.8E-15 T 31-10-2018 IPR038296 Antitoxin ParD superfamily Y89_5138 44a690ee29ccacfa0cdf749210597f43 90 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 62 1.7E-10 T 31-10-2018 IPR022789 Antitoxin ParD Y89_5138 44a690ee29ccacfa0cdf749210597f43 90 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 3 67 1.2E-16 T 31-10-2018 IPR022789 Antitoxin ParD Y89_5138 44a690ee29ccacfa0cdf749210597f43 90 SUPERFAMILY SSF47598 1 43 2.67E-11 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 391 486 1.7E-13 T 31-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 Gene3D G3DSA:3.50.50.60 16 376 3.0E-138 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 Gene3D G3DSA:1.10.8.870 402 471 3.3E-23 T 31-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 20 37 - T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 362 372 - T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 Pfam PF01266 FAD dependent oxidoreductase 16 369 2.2E-49 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 SUPERFAMILY SSF51905 15 306 3.08E-32 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 Gene3D G3DSA:3.30.9.10 93 330 3.0E-138 T 31-10-2018 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 44 56 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 357 369 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 89 101 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 323 329 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 15 27 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1442 46e5fd0c3a23b67462be4f3ee37886c8 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 28 38 2.3E-29 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 4.2E-73 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 Pfam PF02785 Biotin carboxylase C-terminal domain 339 445 6.7E-39 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 113 1.5E-41 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 SUPERFAMILY SSF56059 86 351 7.07E-68 T 31-10-2018 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 Gene3D G3DSA:3.30.470.130 1 450 2.3E-186 T 31-10-2018 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 SUPERFAMILY SSF52440 3 116 5.9E-44 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 SMART SM00878 339 445 7.1E-60 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_0516 d41bf8a9e5f9471fd698259840cb6dbb 458 SUPERFAMILY SSF51246 334 448 1.52E-39 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 SMART SM00965 97 148 1.2E-11 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 Gene3D G3DSA:2.170.130.10 172 297 9.2E-36 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 Pfam PF00593 TonB dependent receptor 455 987 1.1E-40 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 Pfam PF07715 TonB-dependent Receptor Plug Domain 178 281 3.6E-17 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 972 989 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 SUPERFAMILY SSF56935 161 989 2.07E-86 T 31-10-2018 Y89_5566 f7e3de5e257693462a84eb8be579e90c 989 Gene3D G3DSA:3.55.50.30 75 147 7.2E-23 T 31-10-2018 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 SUPERFAMILY SSF53850 100 311 3.44E-31 T 31-10-2018 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:3.40.190.10 178 279 1.6E-47 T 31-10-2018 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 Pfam PF03466 LysR substrate binding domain 99 306 5.0E-31 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2101 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 5.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 5.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 5.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:1.10.10.10 13 101 1.0E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2101 c92b710eae935c55ab7721278ce5d882 329 Gene3D G3DSA:3.40.190.10 104 296 1.6E-47 T 31-10-2018 Y89_2101 c92b710eae935c55ab7721278ce5d882 329 SUPERFAMILY SSF46785 12 122 1.75E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2101 c92b710eae935c55ab7721278ce5d882 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 5.9E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0475 86df30bb3756ff04ec9b3a5e82fd38e6 733 Pfam PF12805 FUSC-like inner membrane protein yccS 71 354 1.3E-114 T 31-10-2018 IPR032692 Integral membrane protein YccS, N-terminal Y89_0475 86df30bb3756ff04ec9b3a5e82fd38e6 733 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 14 715 3.1E-235 T 31-10-2018 IPR010019 Integral membrane protein, YccS Y89_0475 86df30bb3756ff04ec9b3a5e82fd38e6 733 Pfam PF13515 Fusaric acid resistance protein-like 412 529 2.1E-21 T 31-10-2018 Y89_0475 86df30bb3756ff04ec9b3a5e82fd38e6 733 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 717 0.0 T 31-10-2018 IPR010020 Integral membrane protein, YccS/YhfK Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SMART SM00304 320 372 3.2E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Gene3D G3DSA:1.10.287.130 321 379 2.6E-6 T 31-10-2018 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Pfam PF00989 PAS fold 373 483 9.3E-16 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Gene3D G3DSA:3.30.450.20 380 495 2.4E-23 T 31-10-2018 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SMART SM00091 372 438 6.3E-15 T 31-10-2018 IPR000014 PAS domain Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SUPERFAMILY SSF55073 502 657 1.26E-46 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SMART SM00086 444 486 8.1E-5 T 31-10-2018 IPR001610 PAC motif Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SUPERFAMILY SSF55785 359 484 4.51E-28 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SMART SM00267 486 657 1.9E-63 T 31-10-2018 IPR000160 GGDEF domain Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Pfam PF00672 HAMP domain 321 369 8.6E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 SUPERFAMILY SSF158472 321 369 6.93E-5 T 31-10-2018 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 369 493 3.3E-23 T 31-10-2018 IPR000014 PAS domain Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 495 653 3.0E-42 T 31-10-2018 IPR000160 GGDEF domain Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Pfam PF00990 Diguanylate cyclase, GGDEF domain 497 651 2.6E-45 T 31-10-2018 IPR000160 GGDEF domain Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Pfam PF05228 CHASE4 domain 63 225 3.9E-28 T 31-10-2018 IPR007892 CHASE4 Y89_4513 b992646bd7dfb04fddb762890a1f5a0d 661 Gene3D G3DSA:3.30.70.270 496 659 7.0E-57 T 31-10-2018 Y89_1379 04fa9fa48b6fd250740916f17a2eca1f 168 SMART SM00935 11 165 1.2E-37 T 31-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Y89_1379 04fa9fa48b6fd250740916f17a2eca1f 168 Pfam PF03938 Outer membrane protein (OmpH-like) 9 164 7.7E-25 T 31-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Y89_1379 04fa9fa48b6fd250740916f17a2eca1f 168 SUPERFAMILY SSF111384 22 165 9.55E-29 T 31-10-2018 Y89_1379 04fa9fa48b6fd250740916f17a2eca1f 168 Gene3D G3DSA:3.30.910.20 15 168 1.8E-23 T 31-10-2018 IPR024930 Skp domain superfamily Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 352 182.417 T 31-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 SMART SM00382 55 182 7.4E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 SUPERFAMILY SSF46785 261 334 1.47E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Gene3D G3DSA:3.40.50.300 22 185 6.5E-37 T 31-10-2018 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Gene3D G3DSA:1.10.8.60 186 259 1.3E-31 T 31-10-2018 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 254 337 2.0E-42 T 31-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 14 239 8.9E-117 T 31-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 330 1.2E-151 T 31-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 257 330 2.6E-33 T 31-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 SUPERFAMILY SSF52540 24 255 1.84E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4388 b2577e48b67d4ddc5b402a0b3c08c543 352 Gene3D G3DSA:1.10.10.10 261 338 3.4E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 SMART SM00421 142 199 5.5E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 199 3.7E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 SUPERFAMILY SSF52172 9 156 1.42E-33 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 Gene3D G3DSA:3.40.50.2300 2 134 7.1E-45 T 31-10-2018 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 4.2E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 4.2E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 4.2E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 Pfam PF00072 Response regulator receiver domain 9 118 3.1E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 SMART SM00448 7 118 5.7E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 SUPERFAMILY SSF46894 132 206 2.82E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0826 82934b8ce0c6baea63f976ae1807a245 214 Gene3D G3DSA:1.10.10.10 136 203 3.8E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0381 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 67 91 1.4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 129 164 1.8E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 200 216 0.02 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 94 128 9.1E-10 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 Pfam PF08238 Sel1 repeat 217 251 2.2E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 Gene3D G3DSA:1.25.40.10 14 195 4.9E-39 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0381 54197f24ddca5007244926346e3a4809 328 Gene3D G3DSA:1.25.40.10 196 280 1.0E-13 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0381 54197f24ddca5007244926346e3a4809 328 SUPERFAMILY SSF81901 196 259 1.44E-11 T 31-10-2018 Y89_0381 54197f24ddca5007244926346e3a4809 328 SMART SM00671 61 92 20.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 SMART SM00671 165 216 91.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 SMART SM00671 93 128 2.9E-10 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 SMART SM00671 217 252 2.8E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 SMART SM00671 129 164 1.7E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_0381 54197f24ddca5007244926346e3a4809 328 SUPERFAMILY SSF81901 52 177 2.49E-30 T 31-10-2018 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.3E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 Pfam PF03466 LysR substrate binding domain 91 292 2.2E-57 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:1.10.10.10 1 86 2.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 SUPERFAMILY SSF53850 91 296 6.83E-51 T 31-10-2018 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 SUPERFAMILY SSF46785 2 84 6.61E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:3.40.190.10 91 288 1.9E-49 T 31-10-2018 Y89_1611 e22205a348c2331b3d80aa45c4e00a97 308 Gene3D G3DSA:3.40.190.10 164 265 1.9E-49 T 31-10-2018 Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 SUPERFAMILY SSF54593 139 288 1.19E-17 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 SUPERFAMILY SSF54593 1 136 1.29E-21 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 162 261 4.4E-8 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 Gene3D G3DSA:3.10.180.10 1 130 3.3E-35 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 240 261 - T 31-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 Y89_2573 07e432e98cbae0fddb57271ba53dd57f 314 Gene3D G3DSA:3.10.180.10 135 296 2.0E-29 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3329 7cce59c82c8c0c2704be6ff5a47443e3 187 SUPERFAMILY SSF159275 5 187 6.28E-57 T 31-10-2018 Y89_3329 7cce59c82c8c0c2704be6ff5a47443e3 187 Pfam PF06475 Putative glycolipid-binding 17 186 6.7E-55 T 31-10-2018 IPR009467 Putative glycolipid-binding protein Y89_4024 31059cb02eca340eed150258727ac219 515 Gene3D G3DSA:3.40.50.1100 25 328 1.8E-134 T 31-10-2018 Y89_4024 31059cb02eca340eed150258727ac219 515 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 317 1.2E-81 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_4024 31059cb02eca340eed150258727ac219 515 SUPERFAMILY SSF53686 16 366 1.7E-103 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_4024 31059cb02eca340eed150258727ac219 515 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 16 513 4.1E-241 T 31-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_4024 31059cb02eca340eed150258727ac219 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 330 420 2.7E-23 T 31-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_4024 31059cb02eca340eed150258727ac219 515 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 430 513 2.7E-25 T 31-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_4024 31059cb02eca340eed150258727ac219 515 SUPERFAMILY SSF55021 421 513 2.75E-27 T 31-10-2018 Y89_4024 31059cb02eca340eed150258727ac219 515 Gene3D G3DSA:3.40.50.1100 61 157 1.8E-134 T 31-10-2018 Y89_4024 31059cb02eca340eed150258727ac219 515 Gene3D G3DSA:3.40.1020.10 339 515 6.5E-72 T 31-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_4024 31059cb02eca340eed150258727ac219 515 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 165 3.0E-22 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 Pfam PF04542 Sigma-70 region 2 15 80 9.1E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 Gene3D G3DSA:1.10.1740.10 4 77 4.2E-8 T 31-10-2018 Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 Gene3D G3DSA:1.10.10.10 90 168 1.1E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 SUPERFAMILY SSF88659 90 166 2.62E-15 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 SUPERFAMILY SSF88946 10 100 9.02E-15 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3411 0585ba6662f3ffdf151be4f52a1db0cc 168 Pfam PF08281 Sigma-70, region 4 112 163 2.5E-16 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 SUPERFAMILY SSF46689 251 299 1.97E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 Pfam PF12833 Helix-turn-helix domain 221 298 2.7E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 Pfam PF12852 Cupin 11 182 1.9E-30 T 31-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 2.0E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 2.0E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 Gene3D G3DSA:1.10.10.60 201 301 3.5E-25 T 31-10-2018 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 SUPERFAMILY SSF46689 201 246 1.97E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2922 19292a3ea69ed996a0a0b53fdc2d8513 301 SMART SM00342 215 297 3.8E-27 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3584 5ad5b85f83d629be6dbc933f6c199194 229 SUPERFAMILY SSF52096 3 224 2.39E-45 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3584 5ad5b85f83d629be6dbc933f6c199194 229 Gene3D G3DSA:3.90.226.10 1 229 1.1E-72 T 31-10-2018 Y89_3584 5ad5b85f83d629be6dbc933f6c199194 229 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 226 2.1E-32 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 Gene3D G3DSA:2.40.50.140 4 87 2.3E-37 T 31-10-2018 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 79 2.0E-35 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 83 25.574 T 31-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 79 1.7E-37 T 31-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 2.1E-13 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 2.1E-13 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 2.1E-13 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 SUPERFAMILY SSF50249 9 85 3.47E-33 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0768 808061b58de0b6b1035bd0d56932bf94 88 Pfam PF00366 Ribosomal protein S17 13 79 8.8E-34 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 Gene3D G3DSA:3.20.20.70 70 340 3.0E-108 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 SUPERFAMILY SSF102114 108 320 1.03E-13 T 31-10-2018 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 Gene3D G3DSA:1.10.150.530 8 69 1.6E-26 T 31-10-2018 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 PIRSF PIRSF006004 4 368 8.3E-153 T 31-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 5 359 4.2E-144 T 31-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 8 355 73.213 T 31-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Y89_1220 92c7d0c715be41bf84b02fd7d4e8a2cb 379 Pfam PF04055 Radical SAM superfamily 112 280 8.8E-16 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF53623 103 318 6.02E-53 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.40.1390.10 1 82 1.6E-32 T 31-10-2018 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.40.1190.10 83 318 1.0E-96 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF63418 5 98 7.06E-25 T 31-10-2018 IPR035911 MurE/MurF, N-terminal Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Gene3D G3DSA:3.90.190.20 319 451 3.0E-50 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF01225 Mur ligase family, catalytic domain 26 94 7.8E-10 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 391 2.3E-12 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 450 2.0E-148 T 31-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Pfam PF08245 Mur ligase middle domain 108 300 1.4E-47 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 SUPERFAMILY SSF53244 320 450 5.26E-34 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4905 77ec8ac86e144313731ee11d295a2ca2 458 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 451 33.894 T 31-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 Pfam PF03466 LysR substrate binding domain 95 295 1.4E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:1.10.10.10 1 89 7.2E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 SUPERFAMILY SSF53850 91 294 1.52E-43 T 31-10-2018 Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:3.40.190.10 91 293 1.2E-65 T 31-10-2018 Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 SUPERFAMILY SSF46785 4 85 9.46E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 3.8E-14 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4130 016d95e88eb7e2db3694144e990c0df2 297 Gene3D G3DSA:3.40.190.10 172 268 1.2E-65 T 31-10-2018 Y89_3049 e808226993619eed4e8871fc280ea138 319 PIRSF PIRSF000103 18 316 4.9E-76 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_3049 e808226993619eed4e8871fc280ea138 319 Gene3D G3DSA:3.40.50.720 19 181 1.2E-35 T 31-10-2018 Y89_3049 e808226993619eed4e8871fc280ea138 319 Gene3D G3DSA:1.10.1040.10 182 317 7.1E-48 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_3049 e808226993619eed4e8871fc280ea138 319 SUPERFAMILY SSF48179 196 308 5.55E-6 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3049 e808226993619eed4e8871fc280ea138 319 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 26 178 9.5E-17 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_3049 e808226993619eed4e8871fc280ea138 319 SUPERFAMILY SSF51735 26 178 1.45E-22 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4345 8d1e09a9c64e880042f4718a63f56f6c 252 SMART SM00849 11 162 1.1E-14 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4345 8d1e09a9c64e880042f4718a63f56f6c 252 Gene3D G3DSA:3.60.15.10 1 233 1.5E-40 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4345 8d1e09a9c64e880042f4718a63f56f6c 252 Pfam PF12706 Beta-lactamase superfamily domain 22 204 4.6E-23 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4345 8d1e09a9c64e880042f4718a63f56f6c 252 SUPERFAMILY SSF56281 1 222 1.1E-42 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Pfam PF03466 LysR substrate binding domain 89 291 2.5E-29 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 SUPERFAMILY SSF46785 5 84 1.68E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.0E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.0E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.0E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 SUPERFAMILY SSF53850 91 292 2.17E-29 T 31-10-2018 Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Gene3D G3DSA:1.10.10.10 1 85 4.3E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.4E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2143 1a6a6ed04a2ff7ac5e0e67f1c173cb06 296 Gene3D G3DSA:3.40.190.290 95 275 1.6E-17 T 31-10-2018 Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 PIRSF PIRSF019422 4 383 2.7E-118 T 31-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 Pfam PF06725 3D domain 303 375 1.2E-23 T 31-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 Pfam PF03562 MltA specific insert domain 55 280 4.2E-76 T 31-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 Gene3D G3DSA:2.40.240.50 125 286 8.2E-111 T 31-10-2018 Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 Gene3D G3DSA:2.40.40.10 47 377 8.2E-111 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 SUPERFAMILY SSF50685 41 380 3.07E-125 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_4131 ba8d837e8d6f2c4b2ea0b8816eec1cc8 385 SMART SM00925 126 281 1.4E-85 T 31-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Y89_6291 5d374c00c71e81be9f7cc8de8f7f5a29 169 Pfam PF01551 Peptidase family M23 50 137 1.2E-19 T 31-10-2018 IPR016047 Peptidase M23 Y89_6291 5d374c00c71e81be9f7cc8de8f7f5a29 169 SUPERFAMILY SSF51261 23 138 3.56E-27 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_6291 5d374c00c71e81be9f7cc8de8f7f5a29 169 Gene3D G3DSA:2.70.70.10 22 157 3.2E-28 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_3695 38cec694a4d87947444b811e6ff535c1 215 Gene3D G3DSA:3.40.1090.10 1 78 4.3E-9 T 31-10-2018 Y89_3695 38cec694a4d87947444b811e6ff535c1 215 SUPERFAMILY SSF52151 1 210 2.25E-14 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_5355 2699994ded963183c12247d4b1983706 304 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 5.3E-57 T 31-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Y89_5355 2699994ded963183c12247d4b1983706 304 SUPERFAMILY SSF88697 245 303 4.97E-14 T 31-10-2018 IPR015947 PUA-like superfamily Y89_5355 2699994ded963183c12247d4b1983706 304 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 1.7E-80 T 31-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5355 2699994ded963183c12247d4b1983706 304 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 242 3.1E-20 T 31-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Y89_5355 2699994ded963183c12247d4b1983706 304 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 302 19.341 T 31-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5355 2699994ded963183c12247d4b1983706 304 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 246 302 2.7E-20 T 31-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5355 2699994ded963183c12247d4b1983706 304 Gene3D G3DSA:2.30.130.10 244 304 1.2E-26 T 31-10-2018 IPR036974 PUA domain superfamily GO:0003723 Y89_5355 2699994ded963183c12247d4b1983706 304 SUPERFAMILY SSF55120 11 241 4.03E-84 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5355 2699994ded963183c12247d4b1983706 304 Gene3D G3DSA:3.30.2350.10 1 241 1.6E-93 T 31-10-2018 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 297 304 - T 31-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 304 461 1.2E-47 T 31-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 SUPERFAMILY SSF55347 299 462 2.44E-55 T 31-10-2018 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 SUPERFAMILY SSF51735 139 315 8.05E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 140 473 3.2E-111 T 31-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 Gene3D G3DSA:3.40.50.720 140 474 1.0E-114 T 31-10-2018 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 257 270 1.2E-18 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 320 336 1.2E-18 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 418 433 1.2E-18 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 376 393 1.2E-18 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 293 311 1.2E-18 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 139 249 1.9E-20 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 SMART SM00846 138 299 5.1E-53 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_2018 0efeb4a48ae49bd21d68d466869efdd2 488 Gene3D G3DSA:3.30.360.10 298 463 1.0E-114 T 31-10-2018 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 388 5.2E-124 T 31-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 Pfam PF01494 FAD binding domain 4 317 5.4E-17 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 Gene3D G3DSA:3.50.50.60 7 332 3.1E-97 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 5 388 4.7E-150 T 31-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.5E-11 T 31-10-2018 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.5E-11 T 31-10-2018 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.5E-11 T 31-10-2018 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 2.5E-11 T 31-10-2018 Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 SUPERFAMILY SSF51905 4 383 7.66E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5910 f3864f2df3dc93abf48205dfc1565bed 394 Gene3D G3DSA:3.30.9.50 82 270 3.1E-97 T 31-10-2018 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 SUPERFAMILY SSF52172 1 123 6.83E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 Gene3D G3DSA:1.10.10.10 134 228 2.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 SMART SM00448 2 112 5.1E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 SUPERFAMILY SSF46894 133 224 4.54E-21 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 1.3E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 Gene3D G3DSA:3.40.50.2300 1 121 5.5E-33 T 31-10-2018 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 SMART SM00862 148 224 4.4E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0484 fd71bdcf405927820c403377ffb26ac8 229 Pfam PF00072 Response regulator receiver domain 4 112 3.8E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 698 717 2.5E-54 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 590 606 2.5E-54 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 739 2.5E-54 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 371 2.5E-54 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 668 687 2.5E-54 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Gene3D G3DSA:2.30.130.40 3 113 2.3E-33 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 565 767 1.1E-97 T 31-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Gene3D G3DSA:3.30.230.10 580 767 4.0E-81 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 PIRSF PIRSF001174 1 770 0.0 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Gene3D G3DSA:1.20.58.1480 116 241 6.4E-44 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 SUPERFAMILY SSF54211 590 765 4.55E-58 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 SMART SM00464 6 198 3.1E-73 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 SMART SM00382 344 488 9.3E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Gene3D G3DSA:1.10.8.60 487 579 2.0E-31 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 TIGRFAM TIGR00763 lon: endopeptidase La 8 766 6.4E-302 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Gene3D G3DSA:3.40.50.300 309 486 7.5E-64 T 31-10-2018 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 197 9.3E-42 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 SUPERFAMILY SSF88697 6 197 8.45E-49 T 31-10-2018 IPR015947 PUA-like superfamily Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 SUPERFAMILY SSF52540 309 581 1.01E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 348 484 9.3E-19 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3526 33b7c4f9e04df3663627d1ab2d3866ec 798 Hamap MF_01973 Lon protease [lon]. 7 767 71.382 T 31-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 SUPERFAMILY SSF53850 88 294 1.61E-47 T 31-10-2018 Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 Pfam PF03466 LysR substrate binding domain 87 292 3.6E-48 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 Gene3D G3DSA:1.10.10.10 3 90 2.6E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 SUPERFAMILY SSF46785 4 111 2.4E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 Gene3D G3DSA:3.40.190.10 164 265 1.1E-66 T 31-10-2018 Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 Gene3D G3DSA:3.40.190.10 91 290 1.1E-66 T 31-10-2018 Y89_2644 4e9c7e8c4512c613e0272018785963a6 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PIRSF PIRSF002583 1 634 1.3E-217 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Gene3D G3DSA:3.30.230.80 235 407 1.9E-69 T 31-10-2018 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Pfam PF00183 Hsp90 protein 227 629 3.1E-132 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Gene3D G3DSA:3.30.565.10 1 229 1.5E-77 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Gene3D G3DSA:1.20.120.790 500 631 1.1E-42 T 31-10-2018 IPR037196 HSP90, C-terminal domain Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Gene3D G3DSA:3.40.50.11260 408 499 7.5E-34 T 31-10-2018 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 SMART SM00387 30 187 1.6E-13 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 185 3.5E-13 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 SUPERFAMILY SSF55874 8 216 1.51E-65 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 8 28 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 175 192 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 193 211 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 123 145 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 96 113 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 29 51 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 PRINTS PR00775 90kDa heat shock protein signature 78 95 3.2E-61 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 SUPERFAMILY SSF54211 236 491 2.12E-98 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 32.852 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 31-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 Y89_3739 5feaf6cf9389a162497eb30186e924cf 634 SUPERFAMILY SSF110942 518 630 4.05E-35 T 31-10-2018 IPR037196 HSP90, C-terminal domain Y89_0918 2585532a4dc0b4ded879188730a924a8 251 Pfam PF09836 Putative DNA-binding domain 7 93 2.0E-22 T 31-10-2018 IPR018640 Putative DNA-binding domain, bacteria Y89_0918 2585532a4dc0b4ded879188730a924a8 251 Gene3D G3DSA:1.10.150.690 33 120 1.8E-24 T 31-10-2018 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 Gene3D G3DSA:3.40.190.290 90 293 1.8E-53 T 31-10-2018 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 SUPERFAMILY SSF46785 3 109 5.26E-26 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 Pfam PF03466 LysR substrate binding domain 88 284 1.9E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 SUPERFAMILY SSF53850 90 292 5.02E-41 T 31-10-2018 Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 Gene3D G3DSA:1.10.10.10 1 88 2.2E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3221 f6a3c7f06a4c463f355c95cf11d677a4 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.5E-25 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF50249 49 125 1.77E-29 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00382 170 355 6.3E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Gene3D G3DSA:3.40.50.300 130 417 5.3E-135 T 31-10-2018 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 4.8E-15 T 31-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00959 5 47 9.0E-16 T 31-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.3E-219 T 31-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF68912 1 46 3.92E-11 T 31-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 3.7E-24 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 253.582 T 31-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.0E-32 T 31-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Gene3D G3DSA:2.40.50.140 48 123 1.1E-34 T 31-10-2018 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 Gene3D G3DSA:1.10.720.10 1 47 9.0E-21 T 31-10-2018 Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SUPERFAMILY SSF52540 90 371 3.24E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5927 397e54baea9a8d6f1559af43fbbe05c1 419 SMART SM00357 52 118 8.8E-20 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_3191 40b696930924797461a8e46bc8f42667 424 Pfam PF00355 Rieske [2Fe-2S] domain 37 121 1.1E-18 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 Gene3D G3DSA:2.102.10.10 37 161 6.1E-99 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 Gene3D G3DSA:3.90.380.10 15 409 6.1E-99 T 31-10-2018 Y89_3191 40b696930924797461a8e46bc8f42667 424 SUPERFAMILY SSF50022 8 150 2.88E-42 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 SUPERFAMILY SSF55961 155 414 1.26E-49 T 31-10-2018 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 22 47 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 178 200 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 137 163 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 52 67 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 73 93 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 94 114 5.5E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 157 410 6.6E-17 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_3191 40b696930924797461a8e46bc8f42667 424 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 80 103 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_0164 710640ede0309931adc8d35903be6896 795 SUPERFAMILY SSF56935 112 795 2.09E-125 T 31-10-2018 Y89_0164 710640ede0309931adc8d35903be6896 795 Pfam PF00593 TonB dependent receptor 318 793 3.3E-69 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0164 710640ede0309931adc8d35903be6896 795 Gene3D G3DSA:3.55.50.30 24 126 2.5E-21 T 31-10-2018 Y89_0164 710640ede0309931adc8d35903be6896 795 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 778 795 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_0164 710640ede0309931adc8d35903be6896 795 Gene3D G3DSA:2.40.170.20 259 795 2.3E-119 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0164 710640ede0309931adc8d35903be6896 795 Gene3D G3DSA:2.170.130.10 128 253 6.5E-30 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_0164 710640ede0309931adc8d35903be6896 795 Pfam PF07660 Secretin and TonB N terminus short domain 58 106 1.7E-7 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_0164 710640ede0309931adc8d35903be6896 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 145 242 3.4E-16 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0164 710640ede0309931adc8d35903be6896 795 SMART SM00965 56 107 1.4E-10 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_0164 710640ede0309931adc8d35903be6896 795 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 146 795 3.6E-109 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.4E-12 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SMART SM00345 13 71 5.4E-10 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SMART SM00895 81 207 0.0076 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Gene3D G3DSA:1.10.10.10 3 72 3.7E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Pfam PF07729 FCD domain 88 202 3.8E-10 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 Gene3D G3DSA:1.20.120.530 74 213 1.5E-11 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SUPERFAMILY SSF46785 5 75 2.57E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3812 4ef715ef2220a454c1d2aa5fe4fc5cb8 219 SUPERFAMILY SSF48008 78 215 3.66E-9 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_3289 17726026caa2b95d353270cbd69cc971 302 Gene3D G3DSA:3.40.50.80 142 244 1.0E-18 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_3289 17726026caa2b95d353270cbd69cc971 302 SUPERFAMILY SSF63380 6 128 5.67E-11 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_3289 17726026caa2b95d353270cbd69cc971 302 Pfam PF08021 Siderophore-interacting FAD-binding domain 13 129 1.0E-39 T 31-10-2018 IPR013113 FAD-binding 9, siderophore-interacting Y89_3289 17726026caa2b95d353270cbd69cc971 302 Pfam PF04954 Siderophore-interacting protein 146 298 5.3E-38 T 31-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain Y89_3289 17726026caa2b95d353270cbd69cc971 302 Gene3D G3DSA:3.40.50.80 245 302 4.4E-13 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_3289 17726026caa2b95d353270cbd69cc971 302 Gene3D G3DSA:2.40.30.10 1 129 6.3E-35 T 31-10-2018 Y89_3760 0e21edde1b76074976309f28d2540646 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 162 3.1E-44 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_3760 0e21edde1b76074976309f28d2540646 288 SUPERFAMILY SSF51735 3 165 1.0E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3760 0e21edde1b76074976309f28d2540646 288 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_3760 0e21edde1b76074976309f28d2540646 288 Gene3D G3DSA:1.10.1040.10 164 288 3.5E-38 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_3760 0e21edde1b76074976309f28d2540646 288 Gene3D G3DSA:3.40.50.720 1 163 5.9E-48 T 31-10-2018 Y89_3760 0e21edde1b76074976309f28d2540646 288 SUPERFAMILY SSF48179 164 287 1.36E-39 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3760 0e21edde1b76074976309f28d2540646 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 284 1.5E-34 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_3760 0e21edde1b76074976309f28d2540646 288 PIRSF PIRSF000103 1 288 1.1E-68 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 Gene3D G3DSA:3.30.1300.30 33 126 1.8E-37 T 31-10-2018 Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 Pfam PF02501 Type II secretion system (T2SS), protein I 40 125 1.2E-29 T 31-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 SUPERFAMILY SSF54523 38 124 5.49E-22 T 31-10-2018 Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 TIGRFAM TIGR01707 gspI: type II secretion system protein I 6 105 2.6E-45 T 31-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 7.1E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1920 60c64b33df5d64cf7b6ed800a3a94ef5 129 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 5.9E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_3466 0a3c3d6fde5530420fe87c01cde05f74 275 SUPERFAMILY SSF53335 13 249 1.07E-53 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3466 0a3c3d6fde5530420fe87c01cde05f74 275 PIRSF PIRSF028177 1 274 3.1E-97 T 31-10-2018 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 Y89_3466 0a3c3d6fde5530420fe87c01cde05f74 275 Gene3D G3DSA:3.40.50.150 7 246 3.2E-39 T 31-10-2018 Y89_3466 0a3c3d6fde5530420fe87c01cde05f74 275 Pfam PF04072 Leucine carboxyl methyltransferase 19 175 7.9E-19 T 31-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 5.3E-30 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 5.3E-30 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 5.3E-30 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.3E-30 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 5.3E-30 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 4.2E-70 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 Gene3D G3DSA:3.50.50.60 5 317 1.2E-115 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 SUPERFAMILY SSF55424 335 447 1.39E-35 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 Gene3D G3DSA:3.50.50.60 143 260 1.2E-115 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 Gene3D G3DSA:3.30.390.30 337 451 6.6E-44 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PIRSF PIRSF000350 1 444 3.3E-87 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 1.1E-34 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 1.8E-68 T 31-10-2018 Y89_3297 8fc1e2cf93ea7e326510827375aff97a 451 SUPERFAMILY SSF51905 1 356 5.61E-60 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6103 d2528b7e815ce705f5156b1b22207391 242 PIRSF PIRSF003107 8 229 8.5E-81 T 31-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Y89_6103 d2528b7e815ce705f5156b1b22207391 242 SUPERFAMILY SSF109755 13 234 9.31E-73 T 31-10-2018 Y89_6103 d2528b7e815ce705f5156b1b22207391 242 Pfam PF01895 PhoU domain 27 113 3.4E-22 T 31-10-2018 IPR026022 PhoU domain Y89_6103 d2528b7e815ce705f5156b1b22207391 242 Pfam PF01895 PhoU domain 131 214 1.7E-18 T 31-10-2018 IPR026022 PhoU domain Y89_6103 d2528b7e815ce705f5156b1b22207391 242 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 224 5.1E-80 T 31-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Y89_6103 d2528b7e815ce705f5156b1b22207391 242 Gene3D G3DSA:1.20.58.220 124 239 9.3E-35 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_6103 d2528b7e815ce705f5156b1b22207391 242 Gene3D G3DSA:1.20.58.220 1 123 2.8E-49 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_3795 183bfb13e0687f924952352a4dc5e115 182 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 8 177 35.233 T 31-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Y89_3795 183bfb13e0687f924952352a4dc5e115 182 Gene3D G3DSA:3.40.50.2020 4 178 1.2E-57 T 31-10-2018 Y89_3795 183bfb13e0687f924952352a4dc5e115 182 SUPERFAMILY SSF53271 5 177 6.03E-49 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_3795 183bfb13e0687f924952352a4dc5e115 182 Pfam PF00156 Phosphoribosyl transferase domain 48 157 1.4E-12 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_3795 183bfb13e0687f924952352a4dc5e115 182 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 8 175 1.1E-58 T 31-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Y89_5071 2b60cd07fb1ff627eddaeea5ce774b9a 575 SUPERFAMILY SSF110849 36 137 2.79E-11 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_5071 2b60cd07fb1ff627eddaeea5ce774b9a 575 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 27 288 3.3E-121 T 31-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Y89_5071 2b60cd07fb1ff627eddaeea5ce774b9a 575 SMART SM00470 36 134 0.0087 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_5071 2b60cd07fb1ff627eddaeea5ce774b9a 575 Pfam PF02195 ParB-like nuclease domain 39 124 1.6E-6 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_0174 ca54607b1f7740b39c29262533082461 444 Gene3D G3DSA:2.40.160.10 34 443 7.8E-174 T 31-10-2018 IPR023614 Porin domain superfamily Y89_0174 ca54607b1f7740b39c29262533082461 444 Pfam PF03573 outer membrane porin, OprD family 29 442 2.5E-152 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_0588 3847eba0a023d26aed7a4833affc60bb 52 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 31-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Y89_0588 3847eba0a023d26aed7a4833affc60bb 52 Pfam PF01679 Proteolipid membrane potential modulator 2 49 2.5E-22 T 31-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Y89_3543 43d6ed368d8b4b31f6ffef4fe7846ec9 287 Pfam PF00582 Universal stress protein family 133 272 1.0E-13 T 31-10-2018 IPR006016 UspA Y89_3543 43d6ed368d8b4b31f6ffef4fe7846ec9 287 SUPERFAMILY SSF52402 2 124 6.53E-15 T 31-10-2018 Y89_3543 43d6ed368d8b4b31f6ffef4fe7846ec9 287 Gene3D G3DSA:3.40.50.12370 1 287 8.5E-116 T 31-10-2018 Y89_3543 43d6ed368d8b4b31f6ffef4fe7846ec9 287 SUPERFAMILY SSF52402 133 276 1.34E-16 T 31-10-2018 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 SUPERFAMILY SSF52151 17 302 2.88E-61 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Pfam PF01103 Surface antigen 449 728 1.9E-9 T 31-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Gene3D G3DSA:2.40.160.50 420 728 3.9E-6 T 31-10-2018 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Gene3D G3DSA:3.40.1090.10 14 127 4.2E-31 T 31-10-2018 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Gene3D G3DSA:3.40.1090.10 132 269 1.8E-24 T 31-10-2018 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Pfam PF07244 Surface antigen variable number repeat 333 394 1.6E-5 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Gene3D G3DSA:3.10.20.310 328 402 3.0E-10 T 31-10-2018 Y89_1670 2916111fbc7b1713f5594621a2549d2f 728 Pfam PF01734 Patatin-like phospholipase 27 219 7.8E-28 T 31-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 SUPERFAMILY SSF88946 2 82 5.1E-13 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 SUPERFAMILY SSF88659 67 156 1.0E-15 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 Gene3D G3DSA:1.10.1740.10 1 68 5.3E-8 T 31-10-2018 Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 Gene3D G3DSA:1.10.10.10 76 156 3.4E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 152 3.6E-22 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 Pfam PF08281 Sigma-70, region 4 97 149 2.4E-15 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2812 21060cab9c3d1903bfe75aafe1328a0a 159 Pfam PF04542 Sigma-70 region 2 2 65 1.3E-9 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4978 3ca1b00085cc0faab6227ae4d4a0f4b3 549 Pfam PF08486 Stage II sporulation protein 317 374 9.9E-6 T 31-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Y89_4978 3ca1b00085cc0faab6227ae4d4a0f4b3 549 Pfam PF10062 Predicted secreted protein (DUF2300) 413 531 1.4E-43 T 31-10-2018 IPR018748 Domain of unknown function DUF2300, secreted Y89_4978 3ca1b00085cc0faab6227ae4d4a0f4b3 549 Pfam PF10062 Predicted secreted protein (DUF2300) 85 207 1.6E-38 T 31-10-2018 IPR018748 Domain of unknown function DUF2300, secreted Y89_0726 4edaac4f027dfded1d5b16dcaf0d68d1 140 SUPERFAMILY SSF82784 1 137 1.83E-41 T 31-10-2018 IPR036102 OsmC/Ohr superfamily Y89_0726 4edaac4f027dfded1d5b16dcaf0d68d1 140 Gene3D G3DSA:3.30.300.20 39 137 2.2E-30 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_0726 4edaac4f027dfded1d5b16dcaf0d68d1 140 Gene3D G3DSA:2.20.25.10 1 32 9.0E-14 T 31-10-2018 Y89_0726 4edaac4f027dfded1d5b16dcaf0d68d1 140 Pfam PF02566 OsmC-like protein 34 132 2.8E-19 T 31-10-2018 IPR003718 OsmC/Ohr family Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.40.50.880 9 206 8.9E-52 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 8.8E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 8.8E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 8.8E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 5.2E-36 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF00958 GMP synthase C terminal domain 433 524 9.1E-41 T 31-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Pfam PF02540 NAD synthase 219 291 3.3E-8 T 31-10-2018 IPR022310 NAD/GMP synthase Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.5E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.5E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.5E-5 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF52317 8 237 1.08E-53 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 204 7.2E-77 T 31-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.92 T 31-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 525 3.3E-149 T 31-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF54810 405 525 3.4E-49 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 5.1E-7 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 5.1E-7 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 5.1E-7 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.30.300.10 406 525 4.2E-50 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 SUPERFAMILY SSF52402 197 420 9.7E-59 T 31-10-2018 Y89_1258 0b835cbb9d133cf46ad9db9287652b9b 525 Gene3D G3DSA:3.40.50.620 209 405 5.8E-77 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3568 9ff999ea237c57e0856a52572a614814 532 SUPERFAMILY SSF56935 35 532 7.33E-60 T 31-10-2018 Y89_3568 9ff999ea237c57e0856a52572a614814 532 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 14 532 1.0E-150 T 31-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_3568 9ff999ea237c57e0856a52572a614814 532 Gene3D G3DSA:2.40.160.60 31 511 4.8E-69 T 31-10-2018 Y89_0470 4d9cd728755daac3b0f188308e08b76f 134 Gene3D G3DSA:3.10.129.10 1 126 1.4E-21 T 31-10-2018 Y89_0470 4d9cd728755daac3b0f188308e08b76f 134 SUPERFAMILY SSF54637 4 123 8.57E-24 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_0470 4d9cd728755daac3b0f188308e08b76f 134 Pfam PF03061 Thioesterase superfamily 17 90 3.7E-13 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_3633 8b970db150ffb5b89e62797058fed54b 123 Gene3D G3DSA:3.30.1460.10 1 123 8.0E-47 T 31-10-2018 Y89_3633 8b970db150ffb5b89e62797058fed54b 123 SUPERFAMILY SSF69635 2 121 3.45E-40 T 31-10-2018 Y89_3633 8b970db150ffb5b89e62797058fed54b 123 TIGRFAM TIGR02503 type_III_SycN: type III secretion chaperone SycN 4 122 2.1E-47 T 31-10-2018 IPR012673 Type III secretion system chaperone SycN GO:0009306 Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 Gene3D G3DSA:1.10.8.450 242 274 1.7E-113 T 31-10-2018 Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 313 2.8E-76 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 Pfam PF09084 NMT1/THI5 like 56 250 2.9E-16 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 SUPERFAMILY SSF53850 30 256 9.74E-55 T 31-10-2018 Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 Gene3D G3DSA:3.40.190.10 32 304 1.7E-113 T 31-10-2018 Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 SMART SM00062 31 247 3.9E-31 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1561 346244af48757cf1e7ec1dbfbd7c3fc4 323 Gene3D G3DSA:3.40.190.10 111 210 1.7E-113 T 31-10-2018 Y89_4715 4caaeb8bfb330ac2d4b1e9a52998a75d 302 Pfam PF13280 WYL domain 122 193 3.8E-10 T 31-10-2018 IPR026881 WYL domain Y89_4715 4caaeb8bfb330ac2d4b1e9a52998a75d 302 PIRSF PIRSF015558 2 289 3.4E-84 T 31-10-2018 IPR016634 WYL domain protein, s026 type Y89_6001 9de10368f50c5ea4b176c67096079b3d 101 Pfam PF12840 Helix-turn-helix domain 7 78 7.2E-11 T 31-10-2018 Y89_6001 9de10368f50c5ea4b176c67096079b3d 101 Gene3D G3DSA:1.10.10.10 2 101 2.2E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6001 9de10368f50c5ea4b176c67096079b3d 101 SMART SM00418 7 99 7.7E-8 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_6001 9de10368f50c5ea4b176c67096079b3d 101 SUPERFAMILY SSF46785 3 99 5.96E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 SUPERFAMILY SSF103473 6 387 1.19E-54 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 PRINTS PR01035 Tetracycline resistance protein signature 83 107 6.3E-9 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 PRINTS PR01035 Tetracycline resistance protein signature 52 71 6.3E-9 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 PRINTS PR01035 Tetracycline resistance protein signature 141 163 6.3E-9 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 PRINTS PR01035 Tetracycline resistance protein signature 248 268 6.3E-9 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 Gene3D G3DSA:1.20.1250.20 15 385 1.3E-47 T 31-10-2018 Y89_6288 2bf6ff6b39465f6d6ef98ea2561bd8a1 401 Pfam PF07690 Major Facilitator Superfamily 21 310 2.1E-35 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 ProSitePatterns PS00893 Nudix box signature. 175 196 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Hamap MF_00297 NADH pyrophosphatase [nudC]. 8 273 50.644 T 31-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 19 107 1.0E-11 T 31-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 109 140 1.5E-11 T 31-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Gene3D G3DSA:3.90.79.20 5 141 9.3E-26 T 31-10-2018 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 SUPERFAMILY SSF55811 8 112 2.23E-23 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 SUPERFAMILY SSF55811 94 260 1.33E-45 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Pfam PF00293 NUDIX domain 145 258 2.9E-22 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_3506 74cdbe97249da67a29a9234d57241b3b 278 Gene3D G3DSA:3.90.79.10 142 270 2.3E-42 T 31-10-2018 Y89_1624 c262e2ba9ae710c86af2bfb531827c04 108 SUPERFAMILY SSF47598 14 59 1.04E-13 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_1624 c262e2ba9ae710c86af2bfb531827c04 108 Gene3D G3DSA:1.10.1220.10 1 66 2.3E-35 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y89_1624 c262e2ba9ae710c86af2bfb531827c04 108 Pfam PF03869 Arc-like DNA binding domain 13 62 1.4E-28 T 31-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:4.10.860.10 626 669 4.1E-15 T 31-10-2018 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF02151 UvrB/uvrC motif 632 665 3.8E-9 T 31-10-2018 IPR001943 UVR domain GO:0005515 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF00271 Helicase conserved C-terminal domain 435 542 4.6E-17 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF52540 36 581 1.61E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 413 594 7.4E-51 T 31-10-2018 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF12344 Ultra-violet resistance protein B 550 592 2.1E-22 T 31-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 SMART SM00490 458 544 8.3E-19 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF46600 626 667 1.7E-11 T 31-10-2018 IPR036876 UVR domain superfamily Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 664 0.0 T 31-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 SUPERFAMILY SSF52540 2 413 9.98E-139 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 666 43.739 T 31-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Pfam PF04851 Type III restriction enzyme, res subunit 11 118 5.8E-9 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 264 412 4.3E-50 T 31-10-2018 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 Gene3D G3DSA:3.40.50.300 1 233 9.1E-74 T 31-10-2018 Y89_1881 0b2dcac1478da7b1b975d99c4835f401 670 SMART SM00487 8 424 3.8E-30 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_5410 d3ba9f5932055d8b7129f24a0eb05358 242 Gene3D G3DSA:3.30.460.10 17 189 9.4E-50 T 31-10-2018 Y89_5410 d3ba9f5932055d8b7129f24a0eb05358 242 Pfam PF04229 GrpB protein 22 182 4.8E-49 T 31-10-2018 IPR007344 GrpB/Dephospho-CoA kinase Y89_5410 d3ba9f5932055d8b7129f24a0eb05358 242 SUPERFAMILY SSF81301 24 186 4.25E-46 T 31-10-2018 Y89_3298 84797f0db772d3651a40f5f814a16b1b 140 Gene3D G3DSA:3.10.180.10 5 134 1.3E-23 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3298 84797f0db772d3651a40f5f814a16b1b 140 SUPERFAMILY SSF54593 5 130 3.62E-27 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3298 84797f0db772d3651a40f5f814a16b1b 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 3.9E-9 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM00116 213 262 7.2 T 31-10-2018 IPR000644 CBS domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM00116 277 325 1.2 T 31-10-2018 IPR000644 CBS domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF00571 CBS domain 216 261 3.7E-4 T 31-10-2018 IPR000644 CBS domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF00571 CBS domain 277 325 2.1E-7 T 31-10-2018 IPR000644 CBS domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 SMART SM01091 340 418 3.4E-18 T 31-10-2018 IPR005170 Transporter-associated domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Gene3D G3DSA:3.10.580.10 186 340 1.0E-44 T 31-10-2018 Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 SUPERFAMILY SSF54631 192 328 1.17E-28 T 31-10-2018 Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF01595 Domain of unknown function DUF21 12 165 3.5E-37 T 31-10-2018 IPR002550 CNNM, transmembrane domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Pfam PF03471 Transporter associated domain 341 414 9.8E-15 T 31-10-2018 IPR005170 Transporter-associated domain Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 SUPERFAMILY SSF56176 337 418 4.91E-18 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_1279 94c2dc956ca4548b96411b5a45fbd1c6 430 Gene3D G3DSA:3.30.465.10 341 415 8.1E-24 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_5739 fe6b4748ea4c43b9e966898fc0f13814 111 SUPERFAMILY SSF101386 3 96 6.32E-25 T 31-10-2018 Y89_5739 fe6b4748ea4c43b9e966898fc0f13814 111 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 2 92 21.011 T 31-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Y89_5739 fe6b4748ea4c43b9e966898fc0f13814 111 Gene3D G3DSA:1.10.287.1080 1 98 2.6E-29 T 31-10-2018 Y89_5739 fe6b4748ea4c43b9e966898fc0f13814 111 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 95 1.6E-17 T 31-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Y89_5739 fe6b4748ea4c43b9e966898fc0f13814 111 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 92 4.1E-29 T 31-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Y89_1257 9a682aef3e301f9476152cddaa253426 489 PIRSF PIRSF000130 1 489 1.5E-203 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y89_1257 9a682aef3e301f9476152cddaa253426 489 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 488 83.898 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y89_1257 9a682aef3e301f9476152cddaa253426 489 SMART SM01240 7 475 0.0 T 31-10-2018 Y89_1257 9a682aef3e301f9476152cddaa253426 489 SUPERFAMILY SSF51412 2 479 3.53E-127 T 31-10-2018 Y89_1257 9a682aef3e301f9476152cddaa253426 489 Pfam PF00571 CBS domain 95 139 3.4E-10 T 31-10-2018 IPR000644 CBS domain Y89_1257 9a682aef3e301f9476152cddaa253426 489 Pfam PF00571 CBS domain 148 200 1.3E-5 T 31-10-2018 IPR000644 CBS domain Y89_1257 9a682aef3e301f9476152cddaa253426 489 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 31-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Y89_1257 9a682aef3e301f9476152cddaa253426 489 SMART SM00116 157 205 6.7E-4 T 31-10-2018 IPR000644 CBS domain Y89_1257 9a682aef3e301f9476152cddaa253426 489 SMART SM00116 96 143 7.1E-11 T 31-10-2018 IPR000644 CBS domain Y89_1257 9a682aef3e301f9476152cddaa253426 489 SUPERFAMILY SSF54631 94 202 7.07E-26 T 31-10-2018 Y89_1257 9a682aef3e301f9476152cddaa253426 489 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 475 1.1E-164 T 31-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Y89_1257 9a682aef3e301f9476152cddaa253426 489 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 9.5E-191 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Y89_1257 9a682aef3e301f9476152cddaa253426 489 Gene3D G3DSA:3.20.20.70 1 488 1.7E-211 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2166 978f474017f24404fa05431907928cb8 201 SUPERFAMILY SSF52266 23 200 2.6E-48 T 31-10-2018 Y89_2166 978f474017f24404fa05431907928cb8 201 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 26 182 1.1E-23 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain Y89_2166 978f474017f24404fa05431907928cb8 201 Gene3D G3DSA:3.40.50.1110 22 201 6.6E-77 T 31-10-2018 IPR036514 SGNH hydrolase superfamily Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.30.42.60 379 474 4.3E-17 T 31-10-2018 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50156 252 358 4.05E-23 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.40.10.120 27 263 1.1E-86 T 31-10-2018 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13180 PDZ domain 385 466 5.5E-10 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13180 PDZ domain 271 360 3.5E-18 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 128 148 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 310 322 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 107 119 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 168 192 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 202 219 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 5.9E-53 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Gene3D G3DSA:2.30.42.10 265 373 2.0E-28 T 31-10-2018 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 SMART SM00228 384 463 3.7E-11 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 SMART SM00228 270 352 3.9E-15 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50494 6 279 2.58E-70 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 SUPERFAMILY SSF50156 385 472 4.86E-15 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 Pfam PF13365 Trypsin-like peptidase domain 98 231 4.8E-35 T 31-10-2018 Y89_4592 a3a90127e94a09ee89efb8ea18d07b85 474 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 28 470 2.7E-162 T 31-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 3.3E-15 T 31-10-2018 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 3.3E-15 T 31-10-2018 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 3.3E-15 T 31-10-2018 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.3E-15 T 31-10-2018 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 Gene3D G3DSA:3.30.9.30 40 273 5.0E-94 T 31-10-2018 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 SUPERFAMILY SSF51905 6 371 5.18E-60 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 Pfam PF01494 FAD binding domain 7 343 2.3E-24 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_1681 6a9eaf0f3a073a6c6fbe9f4a4ab60e39 388 Gene3D G3DSA:3.50.50.60 9 345 5.0E-94 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4690 98cfeeb2df4976cc29329d488f174381 337 Gene3D G3DSA:1.10.443.10 106 318 2.2E-67 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_4690 98cfeeb2df4976cc29329d488f174381 337 SUPERFAMILY SSF56349 16 316 1.41E-50 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_4690 98cfeeb2df4976cc29329d488f174381 337 Pfam PF00589 Phage integrase family 116 317 4.3E-64 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_4690 98cfeeb2df4976cc29329d488f174381 337 Gene3D G3DSA:1.10.150.130 13 100 7.6E-32 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_4690 98cfeeb2df4976cc29329d488f174381 337 TIGRFAM TIGR02249 integrase_gron: integron integrase 16 330 1.8E-153 T 31-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 Y89_4690 98cfeeb2df4976cc29329d488f174381 337 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 17 98 2.1E-24 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_5352 ed6cb0d3e417c58befec829429760ef5 114 SMART SM00749 50 113 7.1E-10 T 31-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y89_5352 ed6cb0d3e417c58befec829429760ef5 114 Pfam PF04972 BON domain 45 107 2.4E-18 T 31-10-2018 IPR007055 BON domain Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 9 58 2.6E-5 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Gene3D G3DSA:3.40.50.740 73 484 3.5E-100 T 31-10-2018 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Gene3D G3DSA:2.40.40.20 556 702 1.8E-25 T 31-10-2018 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Pfam PF00384 Molybdopterin oxidoreductase 65 482 1.8E-35 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Pfam PF01568 Molydopterin dinucleotide binding domain 576 694 1.1E-25 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Gene3D G3DSA:3.40.228.10 140 336 3.5E-100 T 31-10-2018 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 SMART SM00926 3 62 4.4E-9 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 SUPERFAMILY SSF53706 6 621 7.98E-128 T 31-10-2018 Y89_1493 713180a12fca30294dc67d4db72d42bd 702 Gene3D G3DSA:2.20.25.90 2 67 2.6E-10 T 31-10-2018 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Pfam PF00501 AMP-binding enzyme 82 519 2.8E-91 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 80 1.1E-21 T 31-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Gene3D G3DSA:3.30.300.30 515 644 1.5E-28 T 31-10-2018 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 642 54.0 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 258 269 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Gene3D G3DSA:3.40.50.12780 53 512 3.2E-110 T 31-10-2018 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 3.8E-24 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 640 0.0 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y89_5346 8d35c8dda48ef0e779b679a433dbb081 645 SUPERFAMILY SSF56801 11 637 2.09E-185 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 9.3E-32 T 31-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 378 7.8E-159 T 31-10-2018 IPR020823 Cell division protein FtsA Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.90.640.10 235 300 5.3E-128 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF14450 Cell division protein FtsA 11 193 2.6E-11 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.420.40 197 352 5.3E-128 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 PIRSF PIRSF003101 1 417 1.3E-161 T 31-10-2018 IPR020823 Cell division protein FtsA Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 SUPERFAMILY SSF53067 198 378 6.68E-52 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 SUPERFAMILY SSF53067 9 197 4.12E-63 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.1490.110 87 169 5.3E-128 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 417 31.729 T 31-10-2018 IPR020823 Cell division protein FtsA Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Gene3D G3DSA:3.30.420.40 13 371 5.3E-128 T 31-10-2018 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 SMART SM00842 10 196 7.4E-107 T 31-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Y89_4897 48e70e2a11407bbdc893c9d471f716c4 417 Pfam PF14450 Cell division protein FtsA 207 374 4.0E-26 T 31-10-2018 Y89_0300 f32c298990118010e9c90480e2c0a2c0 272 SUPERFAMILY SSF161098 15 267 1.7E-56 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0300 f32c298990118010e9c90480e2c0a2c0 272 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 8 270 2.6E-128 T 31-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 Y89_0300 f32c298990118010e9c90480e2c0a2c0 272 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 268 2.1E-93 T 31-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Y89_0300 f32c298990118010e9c90480e2c0a2c0 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 270 2.5E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0300 f32c298990118010e9c90480e2c0a2c0 272 Gene3D G3DSA:1.10.3720.10 13 271 4.9E-67 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Gene3D G3DSA:1.20.58.1490 1 94 5.3E-39 T 31-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 35 304 1.0E-79 T 31-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 2.2E-23 T 31-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 SUPERFAMILY SSF46626 215 304 1.72E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 SUPERFAMILY SSF46626 55 207 3.1E-29 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Gene3D G3DSA:1.10.760.10 186 278 8.3E-74 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Gene3D G3DSA:1.10.760.10 107 301 8.3E-74 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 131 205 1.2E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 220 298 1.8E-12 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3782 1bce36d9f697a37d10d72f9dd140f5d0 308 PIRSF PIRSF000006 1 305 6.0E-107 T 31-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 Gene3D G3DSA:3.20.20.140 52 434 6.3E-202 T 31-10-2018 Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 SUPERFAMILY SSF51338 359 436 2.27E-13 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 SUPERFAMILY SSF51556 50 374 5.3E-73 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 452 1.3E-217 T 31-10-2018 IPR010252 Formiminoglutamate deiminase Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 Gene3D G3DSA:2.30.40.10 13 432 6.3E-202 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5777 259bae5567b5bf46e61452deeb49ab30 453 Pfam PF01979 Amidohydrolase family 48 428 1.9E-36 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_6085 ffe24c214affeab2dbfc90d10437fe4a 130 Gene3D G3DSA:3.30.1050.10 10 124 7.9E-12 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_6085 ffe24c214affeab2dbfc90d10437fe4a 130 SUPERFAMILY SSF55718 11 116 4.71E-5 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 440 1.2E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF47384 210 290 1.43E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 3.3E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 3.3E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 438 3.3E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 3.3E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00304 171 226 6.1E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF00672 HAMP domain 172 222 3.2E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00387 332 441 5.8E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 Gene3D G3DSA:1.10.287.130 175 291 1.4E-26 T 31-10-2018 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 290 4.4E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF158472 172 225 3.14E-7 T 31-10-2018 Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 Gene3D G3DSA:3.30.565.10 294 438 3.5E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SUPERFAMILY SSF55874 281 439 6.42E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1809 82195e2cc3d87c518f7a31a447b72f76 445 SMART SM00388 227 291 9.6E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0136 b19694ac2978716d8727e919f36f309c 75 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 42 4.2E-12 T 31-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Y89_0136 b19694ac2978716d8727e919f36f309c 75 SUPERFAMILY SSF48092 16 72 4.32E-12 T 31-10-2018 IPR036535 STAT transcription factor, N-terminal domain superfamily Reactome: R-HSA-8854691 Y89_2070 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 1.5E-37 T 31-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_2070 3536b627110c00a26d72cebc04b77b8f 398 Gene3D G3DSA:3.40.50.720 1 398 1.1E-181 T 31-10-2018 Y89_2070 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 1.9E-107 T 31-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_2070 3536b627110c00a26d72cebc04b77b8f 398 Pfam PF07055 Enoyl reductase FAD binding domain 323 386 2.4E-29 T 31-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_2070 3536b627110c00a26d72cebc04b77b8f 398 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 392 54.776 T 31-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_5714 c2d5f77a7fc554dbda38a276d6770d0e 207 Gene3D G3DSA:1.10.287.540 66 102 4.6E-21 T 31-10-2018 Y89_5714 c2d5f77a7fc554dbda38a276d6770d0e 207 PIRSF PIRSF016482 1 206 1.0E-92 T 31-10-2018 IPR007445 Pilus assembly protein, PilO Y89_5714 c2d5f77a7fc554dbda38a276d6770d0e 207 Pfam PF04350 Pilus assembly protein, PilO 58 202 2.2E-56 T 31-10-2018 IPR007445 Pilus assembly protein, PilO Y89_5714 c2d5f77a7fc554dbda38a276d6770d0e 207 Gene3D G3DSA:3.30.70.60 103 207 6.3E-42 T 31-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Y89_4966 a4327c89924a6c7b886e4194abf1dae6 1276 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 10 1275 8.8E-293 T 31-10-2018 IPR011836 Conserved hypothetical protein CHP02099 Y89_4966 a4327c89924a6c7b886e4194abf1dae6 1276 Pfam PF13502 AsmA-like C-terminal region 1020 1265 4.8E-51 T 31-10-2018 IPR032712 AsmA-like, C-terminal Y89_4966 a4327c89924a6c7b886e4194abf1dae6 1276 Pfam PF13116 Protein of unknown function 513 799 9.3E-50 T 31-10-2018 IPR025263 Domain of unknown function DUF3971 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 7.9E-62 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 TIGRFAM TIGR00492 alr: alanine racemase 4 356 2.0E-104 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 6.4E-42 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 266 281 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 121 133 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 26 42 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 61 79 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 339 352 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 192 219 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 287 304 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 155 166 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 PRINTS PR00992 Alanine racemase signature 249 264 3.9E-63 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 31-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 Hamap MF_01201 Alanine racemase. 1 357 35.201 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 SUPERFAMILY SSF51419 8 234 1.83E-69 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 Gene3D G3DSA:2.40.37.10 8 352 3.0E-120 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 SUPERFAMILY SSF50621 227 357 4.19E-47 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 Gene3D G3DSA:3.20.20.10 10 217 3.0E-120 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5600 f697dca3a7c9a9b59ea1e58fdb76e258 358 SMART SM01005 233 357 2.3E-67 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_5650 bc559dc338c1d90c805c5e2b6f5bea58 263 Gene3D G3DSA:1.10.12.10 206 263 1.2E-16 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_5650 bc559dc338c1d90c805c5e2b6f5bea58 263 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_5650 bc559dc338c1d90c805c5e2b6f5bea58 263 SUPERFAMILY SSF52096 3 263 2.49E-76 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_5650 bc559dc338c1d90c805c5e2b6f5bea58 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 262 1.4E-50 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_5650 bc559dc338c1d90c805c5e2b6f5bea58 263 Gene3D G3DSA:3.90.226.10 4 205 2.2E-61 T 31-10-2018 Y89_3769 69e2cee741fe84cab3fe040b47dfa14e 465 SUPERFAMILY SSF51905 5 305 6.04E-38 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3769 69e2cee741fe84cab3fe040b47dfa14e 465 Pfam PF01266 FAD dependent oxidoreductase 30 393 1.6E-50 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3769 69e2cee741fe84cab3fe040b47dfa14e 465 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 5 464 3.8E-251 T 31-10-2018 IPR017715 Putative aminophosphonate oxidoreductase Y89_3769 69e2cee741fe84cab3fe040b47dfa14e 465 Gene3D G3DSA:3.50.50.60 30 394 8.5E-64 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3769 69e2cee741fe84cab3fe040b47dfa14e 465 Gene3D G3DSA:3.30.9.10 124 354 8.5E-64 T 31-10-2018 Y89_1363 1ee856bf134ad7d102a8258e65999fc8 117 Pfam PF03692 Putative zinc- or iron-chelating domain 20 81 4.3E-10 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y89_1363 1ee856bf134ad7d102a8258e65999fc8 117 PIRSF PIRSF029611 1 117 8.9E-71 T 31-10-2018 IPR016928 Uncharacterised conserved protein UCP029611 Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 8.2E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 SUPERFAMILY SSF46785 12 117 8.17E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 Gene3D G3DSA:1.10.10.10 8 92 3.7E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 Gene3D G3DSA:3.40.190.10 168 269 5.6E-67 T 31-10-2018 Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 Gene3D G3DSA:3.40.190.10 96 294 5.6E-67 T 31-10-2018 Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 Pfam PF03466 LysR substrate binding domain 93 298 1.5E-46 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2406 467e09c266e41d9b6d437d5442930fb9 309 SUPERFAMILY SSF53850 94 300 4.16E-46 T 31-10-2018 Y89_3492 98c9e377505fd3b416e7d01502f92fad 165 PIRSF PIRSF030820 1 165 2.2E-67 T 31-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y89_3492 98c9e377505fd3b416e7d01502f92fad 165 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 161 4.6E-46 T 31-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 PRINTS PR01274 Metalloprotease inhibitor signature 26 42 5.9E-17 T 31-10-2018 IPR022815 Protease inhibitor I38 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 PRINTS PR01274 Metalloprotease inhibitor signature 68 79 5.9E-17 T 31-10-2018 IPR022815 Protease inhibitor I38 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 PRINTS PR01274 Metalloprotease inhibitor signature 90 103 5.9E-17 T 31-10-2018 IPR022815 Protease inhibitor I38 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 PRINTS PR01274 Metalloprotease inhibitor signature 107 120 5.9E-17 T 31-10-2018 IPR022815 Protease inhibitor I38 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 Pfam PF02974 Protease inhibitor Inh 31 128 2.3E-22 T 31-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 SUPERFAMILY SSF50882 26 128 4.45E-26 T 31-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 Gene3D G3DSA:2.40.128.10 26 131 5.7E-37 T 31-10-2018 Y89_4101 7cbc929c3632e29aa272d8e72ba37ade 131 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 38 125 2.0E-34 T 31-10-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 Pfam PF01047 MarR family 40 97 1.8E-16 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 2.6E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 2.6E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 2.6E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 SMART SM00347 32 133 8.1E-18 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 SUPERFAMILY SSF46785 6 146 2.42E-30 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1548 43eb5ff7282b31e2f5972b53197866c1 157 Gene3D G3DSA:1.10.10.10 7 148 4.1E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0923 55775a799a6a8fc3858ba561814ee075 86 Gene3D G3DSA:2.30.140.50 19 85 5.8E-19 T 31-10-2018 Y89_0923 55775a799a6a8fc3858ba561814ee075 86 Pfam PF10976 Protein of unknown function (DUF2790) 11 83 1.1E-22 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_4359 b24bfafb49657fc9117197c6d9870095 348 Gene3D G3DSA:3.40.47.10 1 190 1.2E-64 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4359 b24bfafb49657fc9117197c6d9870095 348 Gene3D G3DSA:3.40.47.10 191 348 1.8E-42 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4359 b24bfafb49657fc9117197c6d9870095 348 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 253 341 7.4E-21 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_4359 b24bfafb49657fc9117197c6d9870095 348 SUPERFAMILY SSF53901 4 342 1.96E-41 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4359 b24bfafb49657fc9117197c6d9870095 348 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 124 200 1.8E-18 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 SUPERFAMILY SSF53474 111 369 3.32E-59 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 Gene3D G3DSA:2.40.50.100 1 101 3.7E-22 T 31-10-2018 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 Pfam PF00364 Biotin-requiring enzyme 6 76 2.8E-14 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 Gene3D G3DSA:3.40.50.1820 103 370 2.0E-64 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 Pfam PF00561 alpha/beta hydrolase fold 133 355 6.1E-25 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 158 173 8.3E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 215 8.3E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 229 8.3E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 PRINTS PR00111 Alpha/beta hydrolase fold signature 318 332 8.3E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0870 3877b6c9e374558c8d372ecbf7d8c259 370 SUPERFAMILY SSF51230 3 92 2.36E-21 T 31-10-2018 IPR011053 Single hybrid motif Y89_5225 72fea5225330694c80667cea40be6afa 374 PIRSF PIRSF037565 1 374 2.0E-143 T 31-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 Y89_5225 72fea5225330694c80667cea40be6afa 374 SUPERFAMILY SSF53335 199 356 2.48E-23 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5225 72fea5225330694c80667cea40be6afa 374 Gene3D G3DSA:3.40.50.150 8 183 8.5E-55 T 31-10-2018 Y89_5225 72fea5225330694c80667cea40be6afa 374 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 45.841 T 31-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 Y89_5225 72fea5225330694c80667cea40be6afa 374 SUPERFAMILY SSF53335 43 161 8.94E-5 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5225 72fea5225330694c80667cea40be6afa 374 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_5225 72fea5225330694c80667cea40be6afa 374 Gene3D G3DSA:3.40.50.150 188 374 2.9E-45 T 31-10-2018 Y89_5225 72fea5225330694c80667cea40be6afa 374 Pfam PF05175 Methyltransferase small domain 201 371 9.5E-51 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 31-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 PIRSF PIRSF002134 1 118 3.7E-44 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 Gene3D G3DSA:1.10.8.50 1 71 1.7E-29 T 31-10-2018 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 3.1E-33 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 SUPERFAMILY SSF46946 2 114 3.01E-48 T 31-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 Gene3D G3DSA:4.10.910.10 72 118 3.2E-27 T 31-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.5E-55 T 31-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0781 cd04fee333f03d42c7419d33aa6a7bd3 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.81 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF47336 1982 2056 1.7E-17 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF47336 949 1020 2.75E-17 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF52777 1045 1238 1.09E-25 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.300.30 847 946 5.5E-30 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1617 1628 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.559.30 1226 1468 9.7E-37 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.559.30 190 437 7.3E-41 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.300.30 1872 1977 6.9E-25 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 ProSitePatterns PS00455 Putative AMP-binding domain signature. 591 602 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00501 AMP-binding enzyme 451 852 1.1E-101 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00501 AMP-binding enzyme 1481 1877 1.2E-80 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF56801 1472 2001 3.4E-129 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF52777 9 167 5.0E-25 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF13193 AMP-binding enzyme C-terminal domain 860 933 2.9E-9 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00668 Condensation domain 7 430 4.9E-55 T 31-10-2018 IPR001242 Condensation domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00668 Condensation domain 1057 1458 1.0E-41 T 31-10-2018 IPR001242 Condensation domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.40.50.1820 2067 2346 7.8E-65 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF56801 413 969 2.62E-157 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.40.50.12780 1469 1871 1.6E-115 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00550 Phosphopantetheine attachment site 958 1020 3.0E-12 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00550 Phosphopantetheine attachment site 1992 2055 2.2E-12 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.559.10 1041 1224 1.9E-30 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:1.10.1200.10 1978 2062 9.0E-22 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:1.10.1200.10 947 1023 2.9E-23 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 ProSitePatterns PS00012 Phosphopantetheine attachment site. 980 995 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF52777 1227 1458 1.89E-35 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Pfam PF00975 Thioesterase domain 2078 2337 4.4E-32 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.40.50.12780 440 844 4.4E-140 T 31-10-2018 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 Gene3D G3DSA:3.30.559.10 12 189 2.2E-26 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 473 876 2.6E-135 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1502 1894 2.1E-108 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF53474 2056 2341 9.29E-62 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SMART SM00823 Phosphopantetheine attachment site 956 1024 0.0018 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SMART SM00823 Phosphopantetheine attachment site 1987 2059 3.6E-6 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_1682 9caf7312bd7c7b1e7980b085e567a3de 2352 SUPERFAMILY SSF52777 186 436 1.67E-36 T 31-10-2018 Y89_5712 668674303e60054d434fefafebed60cc 714 Gene3D G3DSA:2.60.40.3470 144 266 2.9E-32 T 31-10-2018 Y89_5712 668674303e60054d434fefafebed60cc 714 Pfam PF11741 AMIN domain 37 121 5.8E-7 T 31-10-2018 IPR021731 AMIN domain Y89_5712 668674303e60054d434fefafebed60cc 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 569 9.4E-19 T 31-10-2018 IPR001775 GspD/PilQ family Y89_5712 668674303e60054d434fefafebed60cc 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 693 707 9.4E-19 T 31-10-2018 IPR001775 GspD/PilQ family Y89_5712 668674303e60054d434fefafebed60cc 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 449 459 9.4E-19 T 31-10-2018 IPR001775 GspD/PilQ family Y89_5712 668674303e60054d434fefafebed60cc 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 670 688 9.4E-19 T 31-10-2018 IPR001775 GspD/PilQ family Y89_5712 668674303e60054d434fefafebed60cc 714 PRINTS PR00811 Bacterial general secretion pathway protein D signature 580 590 9.4E-19 T 31-10-2018 IPR001775 GspD/PilQ family Y89_5712 668674303e60054d434fefafebed60cc 714 Pfam PF03958 Bacterial type II/III secretion system short domain 381 449 2.8E-15 T 31-10-2018 IPR005644 NolW-like Y89_5712 668674303e60054d434fefafebed60cc 714 Pfam PF00263 Bacterial type II and III secretion system protein 549 705 4.3E-49 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_5712 668674303e60054d434fefafebed60cc 714 Gene3D G3DSA:3.30.1370.120 352 450 5.6E-23 T 31-10-2018 IPR038591 NolW-like superfamily Y89_5712 668674303e60054d434fefafebed60cc 714 SMART SM00965 306 354 1.4E-10 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_5712 668674303e60054d434fefafebed60cc 714 Pfam PF07660 Secretin and TonB N terminus short domain 307 353 1.6E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_5712 668674303e60054d434fefafebed60cc 714 Gene3D G3DSA:3.55.50.30 280 351 2.2E-10 T 31-10-2018 Y89_5712 668674303e60054d434fefafebed60cc 714 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 651 684 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y89_5712 668674303e60054d434fefafebed60cc 714 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 281 706 1.1E-160 T 31-10-2018 IPR013355 Type IV pilus secretin PilQ Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 175 193 1.9E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 140 155 1.9E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 PRINTS PR00050 Cold shock protein signature 160 169 1.9E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 SUPERFAMILY SSF50249 137 200 3.67E-22 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 Gene3D G3DSA:2.40.50.140 138 200 1.3E-25 T 31-10-2018 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 SMART SM00357 139 202 6.5E-25 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 Pfam PF00313 'Cold-shock' DNA-binding domain 139 200 1.6E-25 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4394 070ac70e6b60b40d5306f3185c1f66fd 204 ProSitePatterns PS00352 'Cold-shock' domain signature. 151 169 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.6E-63 T 31-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 Gene3D G3DSA:3.30.70.1150 83 163 7.5E-29 T 31-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 SUPERFAMILY SSF55021 79 162 2.29E-26 T 31-10-2018 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 Gene3D G3DSA:3.30.70.260 1 79 2.4E-33 T 31-10-2018 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 SUPERFAMILY SSF55021 1 75 2.45E-21 T 31-10-2018 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 2.0E-37 T 31-10-2018 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.7E-26 T 31-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y89_5307 ebd7ae86d63b19a944fad84811c3a8e3 163 Pfam PF13710 ACT domain 12 72 3.4E-15 T 31-10-2018 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 SUPERFAMILY SSF56655 9 268 6.94E-72 T 31-10-2018 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 5 257 38.468 T 31-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 Gene3D G3DSA:3.40.190.80 152 258 5.6E-31 T 31-10-2018 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 9 254 1.2E-84 T 31-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 31-10-2018 IPR020583 Inositol monophosphatase, metal-binding site Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 2.5E-10 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 2.5E-10 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 2.5E-10 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 2.5E-10 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 Pfam PF00459 Inositol monophosphatase family 10 244 1.1E-47 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_5861 1d18ba548a3c513af9c178c084b8c2c8 273 Gene3D G3DSA:3.30.540.10 7 151 1.1E-40 T 31-10-2018 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 123 206 1.7E-32 T 31-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 SUPERFAMILY SSF52794 2 97 6.93E-24 T 31-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 124 209 1.3E-17 T 31-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 2.2E-10 T 31-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 Gene3D G3DSA:3.40.50.2300 1 102 1.9E-19 T 31-10-2018 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 Pfam PF02378 Phosphotransferase system, EIIC 246 508 4.5E-18 T 31-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 Gene3D G3DSA:3.40.50.2300 113 221 1.8E-36 T 31-10-2018 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 SUPERFAMILY SSF52794 121 218 3.31E-34 T 31-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 Y89_1467 c8725f64fa90d0699fa76f1f28fcf02e 585 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 233 564 4.7E-133 T 31-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 Y89_5634 335d243333d6369eb030f750a84b0f42 754 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 745 0.0 T 31-10-2018 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Gene3D G3DSA:2.120.10.90 504 736 4.4E-11 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y89_5634 335d243333d6369eb030f750a84b0f42 754 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 34.134 T 31-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5634 335d243333d6369eb030f750a84b0f42 754 SMART SM00434 15 465 2.2E-229 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 643 0.0061 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 689 2.9E-5 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Gene3D G3DSA:3.90.199.10 36 487 1.2E-178 T 31-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Gene3D G3DSA:1.10.268.10 373 458 1.2E-178 T 31-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_5634 335d243333d6369eb030f750a84b0f42 754 SUPERFAMILY SSF101904 501 750 5.49E-53 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y89_5634 335d243333d6369eb030f750a84b0f42 754 Gene3D G3DSA:3.30.1360.40 242 335 1.2E-178 T 31-10-2018 Y89_5634 335d243333d6369eb030f750a84b0f42 754 SUPERFAMILY SSF56719 35 487 1.44E-155 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_5634 335d243333d6369eb030f750a84b0f42 754 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 472 1.5E-132 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_1218 27c568a6a4c043ae8a673f4938cd95c9 66 SUPERFAMILY SSF140319 2 64 4.18E-25 T 31-10-2018 IPR036762 IscX-like superfamily Y89_1218 27c568a6a4c043ae8a673f4938cd95c9 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 1.8E-30 T 31-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y89_1218 27c568a6a4c043ae8a673f4938cd95c9 66 PIRSF PIRSF039003 3 66 5.1E-33 T 31-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y89_1218 27c568a6a4c043ae8a673f4938cd95c9 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 5.5E-33 T 31-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 Y89_1218 27c568a6a4c043ae8a673f4938cd95c9 66 Gene3D G3DSA:1.10.10.600 1 66 8.5E-29 T 31-10-2018 IPR036762 IscX-like superfamily Y89_1418 3cc5ee2e82d95b21cf9aca9e47a67b12 297 SUPERFAMILY SSF161098 4 283 1.44E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1418 3cc5ee2e82d95b21cf9aca9e47a67b12 297 Gene3D G3DSA:1.10.3720.10 7 292 6.6E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1418 3cc5ee2e82d95b21cf9aca9e47a67b12 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 286 9.8E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 PIRSF PIRSF001235 12 421 2.9E-135 T 31-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 SUPERFAMILY SSF53187 6 415 1.59E-99 T 31-10-2018 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 Gene3D G3DSA:3.40.630.10 27 410 1.0E-152 T 31-10-2018 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 18 415 1.6E-136 T 31-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 SUPERFAMILY SSF55031 221 336 1.44E-29 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 Pfam PF01546 Peptidase family M20/M25/M40 88 414 8.6E-39 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 Gene3D G3DSA:3.30.70.360 221 335 1.0E-152 T 31-10-2018 Y89_0466 aca01cc2044225ec9b1e150c387f2d0f 427 Pfam PF07687 Peptidase dimerisation domain 220 321 2.1E-5 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_6189 e899fbea9fed988fb4c8cad9c67a99c8 375 Pfam PF13439 Glycosyltransferase Family 4 16 171 8.1E-9 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_6189 e899fbea9fed988fb4c8cad9c67a99c8 375 Pfam PF00534 Glycosyl transferases group 1 198 335 5.3E-26 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_6189 e899fbea9fed988fb4c8cad9c67a99c8 375 Gene3D G3DSA:3.40.50.2000 172 353 1.2E-52 T 31-10-2018 Y89_6189 e899fbea9fed988fb4c8cad9c67a99c8 375 SUPERFAMILY SSF53756 11 373 3.1E-66 T 31-10-2018 Y89_6189 e899fbea9fed988fb4c8cad9c67a99c8 375 Gene3D G3DSA:3.40.50.2000 102 369 1.2E-52 T 31-10-2018 Y89_4192 83a60988e7b2d9beef72dc1e883d907b 267 SUPERFAMILY SSF53335 1 249 8.28E-40 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4192 83a60988e7b2d9beef72dc1e883d907b 267 PIRSF PIRSF018249 1 267 1.2E-82 T 31-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 Y89_4192 83a60988e7b2d9beef72dc1e883d907b 267 Gene3D G3DSA:3.40.50.150 1 266 2.3E-69 T 31-10-2018 Y89_4192 83a60988e7b2d9beef72dc1e883d907b 267 Pfam PF13649 Methyltransferase domain 86 168 6.0E-11 T 31-10-2018 Y89_2776 278eb92d4945481f124a2f6967f5a395 170 SMART SM01040 18 104 3.7E-17 T 31-10-2018 IPR003497 BRO N-terminal domain Y89_2776 278eb92d4945481f124a2f6967f5a395 170 Pfam PF02498 BRO family, N-terminal domain 20 104 2.1E-9 T 31-10-2018 IPR003497 BRO N-terminal domain Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.1390.20 216 355 7.1E-18 T 31-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF07085 DRTGG domain 223 335 2.4E-31 T 31-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.50.300 1 215 5.0E-19 T 31-10-2018 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 PIRSF PIRSF006107 1 703 0.0 T 31-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF75138 220 343 3.92E-25 T 31-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 395 695 2.2E-125 T 31-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.50.10750 518 671 3.6E-130 T 31-10-2018 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Gene3D G3DSA:3.40.50.10950 386 698 3.6E-130 T 31-10-2018 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF13500 AAA domain 2 219 3.5E-33 T 31-10-2018 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF52540 1 229 1.13E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 Pfam PF01515 Phosphate acetyl/butaryl transferase 380 695 6.3E-118 T 31-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Y89_4525 70ac5c68293dd26f41dd2d453e084ecf 704 SUPERFAMILY SSF53659 381 698 1.27E-88 T 31-10-2018 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 SUPERFAMILY SSF55931 119 451 5.69E-104 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 253 268 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 SMART SM01230 117 372 7.0E-98 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 SUPERFAMILY SSF54368 9 112 7.59E-7 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 Gene3D G3DSA:3.30.590.10 120 454 2.4E-100 T 31-10-2018 Y89_3770 308234b4d0fac0cf7a77984b0f88d16c 454 Pfam PF00120 Glutamine synthetase, catalytic domain 118 450 8.2E-107 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_2075 5559bdc47d6a4b689c9b8795436c98fb 60 TIGRFAM TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed) 3 60 3.7E-25 T 31-10-2018 IPR012667 Cobalt transporter subunit CbtB, putative Y89_2075 5559bdc47d6a4b689c9b8795436c98fb 60 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 11 60 4.7E-23 T 31-10-2018 IPR012667 Cobalt transporter subunit CbtB, putative Y89_1536 fe7302cb7a818e1f5d3d617edb389d34 152 SUPERFAMILY SSF55811 9 132 9.21E-21 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_1536 fe7302cb7a818e1f5d3d617edb389d34 152 Pfam PF00293 NUDIX domain 10 119 1.7E-12 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_1536 fe7302cb7a818e1f5d3d617edb389d34 152 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_1536 fe7302cb7a818e1f5d3d617edb389d34 152 Gene3D G3DSA:3.90.79.10 2 148 2.9E-19 T 31-10-2018 Y89_1856 bf83d392757e9841c0f4ef471c59a4e0 349 SUPERFAMILY SSF160355 51 315 2.35E-57 T 31-10-2018 Y89_1856 bf83d392757e9841c0f4ef471c59a4e0 349 Pfam PF02706 Chain length determinant protein 13 107 2.2E-16 T 31-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Y89_1856 bf83d392757e9841c0f4ef471c59a4e0 349 Pfam PF13807 G-rich domain on putative tyrosine kinase 307 339 1.4E-6 T 31-10-2018 IPR032807 Tyrosine kinase, G-rich domain Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 6.7E-56 T 31-10-2018 Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.3E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 SUPERFAMILY SSF51735 9 250 6.55E-73 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 193 0.0012 T 31-10-2018 Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 Gene3D G3DSA:3.40.50.720 8 252 5.1E-73 T 31-10-2018 Y89_3502 cdafc8f1f42f25bc804aa61df2809122 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3084 97ad78731132317acd2c7d15b653625a 417 Gene3D G3DSA:3.50.50.60 6 388 1.1E-85 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3084 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF54373 261 348 1.11E-16 T 31-10-2018 Y89_3084 97ad78731132317acd2c7d15b653625a 417 Pfam PF01266 FAD dependent oxidoreductase 6 385 9.5E-68 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3084 97ad78731132317acd2c7d15b653625a 417 SUPERFAMILY SSF51905 4 411 1.42E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3084 97ad78731132317acd2c7d15b653625a 417 Gene3D G3DSA:3.30.9.10 126 347 1.1E-85 T 31-10-2018 Y89_5082 835e864542f83c9512bffca07e0d95f5 658 Pfam PF00271 Helicase conserved C-terminal domain 495 604 7.1E-13 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_5082 835e864542f83c9512bffca07e0d95f5 658 Pfam PF00176 SNF2 family N-terminal domain 267 469 4.2E-20 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_5082 835e864542f83c9512bffca07e0d95f5 658 Gene3D G3DSA:3.40.50.10810 227 463 5.6E-28 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_5082 835e864542f83c9512bffca07e0d95f5 658 SMART SM00490 521 604 1.5E-12 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_5082 835e864542f83c9512bffca07e0d95f5 658 SMART SM00487 247 415 2.2E-14 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_5082 835e864542f83c9512bffca07e0d95f5 658 Gene3D G3DSA:3.40.50.300 487 653 5.1E-44 T 31-10-2018 Y89_5082 835e864542f83c9512bffca07e0d95f5 658 SUPERFAMILY SSF52540 246 440 5.82E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5082 835e864542f83c9512bffca07e0d95f5 658 SUPERFAMILY SSF52540 346 643 3.08E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0051 462d77e0c0d83dbb8623d1646efba62c 92 SUPERFAMILY SSF143422 3 66 2.09E-11 T 31-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Y89_0051 462d77e0c0d83dbb8623d1646efba62c 92 Gene3D G3DSA:3.30.70.1290 1 88 1.9E-9 T 31-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Y89_0051 462d77e0c0d83dbb8623d1646efba62c 92 Pfam PF01797 Transposase IS200 like 11 67 1.3E-5 T 31-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 197 0.001 T 31-10-2018 Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 Gene3D G3DSA:3.40.50.720 2 263 1.1E-75 T 31-10-2018 Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.6E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 SUPERFAMILY SSF51735 13 254 1.85E-69 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2135 ca78baf00c36a38a7e34b2ea2b105932 292 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 253 6.7E-54 T 31-10-2018 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF09382 RQC domain 401 510 8.1E-36 T 31-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:1.10.10.10 333 515 5.9E-50 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF47819 527 602 3.05E-22 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00490 242 323 4.6E-25 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00487 14 210 6.8E-31 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00956 404 507 6.9E-47 T 31-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF16124 RecQ zinc-binding 335 396 1.4E-20 T 31-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 599 1.1E-245 T 31-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00270 DEAD/DEAH box helicase 21 180 4.0E-19 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00271 Helicase conserved C-terminal domain 219 322 4.5E-16 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF52540 200 444 4.57E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:3.40.50.300 1 200 1.2E-82 T 31-10-2018 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 455 7.6E-154 T 31-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:1.10.150.80 521 602 2.1E-23 T 31-10-2018 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Gene3D G3DSA:3.40.50.300 201 332 2.7E-38 T 31-10-2018 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SUPERFAMILY SSF52540 3 189 1.52E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 SMART SM00341 528 608 4.2E-20 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y89_1665 c859e8d1eb11a299fb0ef90815d56f3b 712 Pfam PF00570 HRDC domain 533 598 1.7E-22 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 SMART SM00100 25 146 1.4E-19 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 Pfam PF00325 Bacterial regulatory proteins, crp family 188 219 9.8E-17 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 SUPERFAMILY SSF51206 18 157 4.32E-31 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 204 219 9.9E-12 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 188 204 9.9E-12 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 Gene3D G3DSA:2.60.120.10 38 159 5.0E-46 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 SUPERFAMILY SSF46785 161 239 3.11E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 Pfam PF00027 Cyclic nucleotide-binding domain 45 129 4.6E-16 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 SMART SM00419 182 230 3.6E-16 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 ProSitePatterns PS00042 Crp-type HTH domain signature. 190 213 - T 31-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Y89_3794 cbf5001cdb797fd5836264fd1665a83d 244 Gene3D G3DSA:1.10.10.10 160 241 1.5E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:1.10.10.60 391 441 5.0E-13 T 31-10-2018 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:3.40.50.2300 2 136 1.3E-34 T 31-10-2018 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:1.10.8.60 317 382 5.1E-19 T 31-10-2018 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 SMART SM00382 166 328 6.1E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF52540 146 375 4.83E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF02954 Bacterial regulatory protein, Fis family 398 438 3.5E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Gene3D G3DSA:3.40.50.300 137 316 1.8E-62 T 31-10-2018 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF52172 3 191 5.83E-44 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF00158 Sigma-54 interaction domain 146 312 2.7E-66 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 SUPERFAMILY SSF46689 358 440 5.82E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 404 421 4.4E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 441 4.4E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 SMART SM00448 5 116 2.5E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4015 d98c965a1dfc4ba3fea59828aecb26e3 441 Pfam PF00072 Response regulator receiver domain 7 115 4.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:1.10.10.60 407 449 4.3E-8 T 31-10-2018 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 171 184 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF02954 Bacterial regulatory protein, Fis family 407 447 1.1E-9 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF00072 Response regulator receiver domain 11 119 4.1E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:3.40.50.300 141 317 2.2E-61 T 31-10-2018 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF52172 9 192 3.27E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:3.40.50.2300 1 140 2.4E-32 T 31-10-2018 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF46689 360 449 1.31E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Gene3D G3DSA:1.10.8.60 318 397 2.8E-25 T 31-10-2018 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 Pfam PF00158 Sigma-54 interaction domain 149 313 5.0E-63 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 SMART SM00448 9 120 2.4E-34 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 SMART SM00382 167 318 4.6E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6223 0f2591e24d6b1fe4e970175bc1886388 449 SUPERFAMILY SSF52540 150 388 1.23E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 Pfam PF03466 LysR substrate binding domain 88 293 8.1E-50 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 Gene3D G3DSA:3.40.190.290 92 294 3.5E-42 T 31-10-2018 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 Gene3D G3DSA:1.10.10.10 1 87 5.5E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 SUPERFAMILY SSF53850 91 295 4.49E-46 T 31-10-2018 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.3E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6120 8dce4e38610fa796ffb2c6d0c1fa85f6 297 SUPERFAMILY SSF46785 2 112 6.74E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6275 120e392e762526c916399787e73a029f 400 SUPERFAMILY SSF52540 3 310 1.27E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6275 120e392e762526c916399787e73a029f 400 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 256 373 1.6E-29 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_6275 120e392e762526c916399787e73a029f 400 Gene3D G3DSA:3.40.50.300 2 229 3.2E-71 T 31-10-2018 Y89_6275 120e392e762526c916399787e73a029f 400 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 210 2.9E-58 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y89_6275 120e392e762526c916399787e73a029f 400 SMART SM00833 256 373 2.3E-46 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 Gene3D G3DSA:3.40.50.2300 31 349 1.2E-118 T 31-10-2018 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 Gene3D G3DSA:3.40.50.2300 148 276 1.2E-118 T 31-10-2018 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 Pfam PF13458 Periplasmic binding protein 29 365 3.9E-67 T 31-10-2018 IPR028081 Leucine-binding protein domain Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 SUPERFAMILY SSF53822 28 366 4.97E-100 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 92 102 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4280 5d89991f061b8f004ee4ee17c3afab3a 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 89 3.8E-52 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_4384 d5a4ab75a30a15b174526ce6c82d5956 347 TIGRFAM TIGR02794 tolA_full: protein TolA 15 342 2.4E-61 T 31-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 Y89_4384 d5a4ab75a30a15b174526ce6c82d5956 347 Pfam PF13103 TonB C terminal 258 322 1.1E-11 T 31-10-2018 Y89_4384 d5a4ab75a30a15b174526ce6c82d5956 347 Gene3D G3DSA:3.30.1150.10 225 347 2.1E-36 T 31-10-2018 Y89_4384 d5a4ab75a30a15b174526ce6c82d5956 347 SUPERFAMILY SSF74653 229 344 3.24E-25 T 31-10-2018 Y89_4384 d5a4ab75a30a15b174526ce6c82d5956 347 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 266 341 5.7E-14 T 31-10-2018 IPR006260 TonB/TolA, C-terminal Y89_3114 91b2da156925c355e3121bb3198a17de 926 SUPERFAMILY SSF51445 4 818 1.95E-132 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3114 91b2da156925c355e3121bb3198a17de 926 Pfam PF00128 Alpha amylase, catalytic domain 25 94 5.4E-15 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3114 91b2da156925c355e3121bb3198a17de 926 Gene3D G3DSA:1.10.10.470 610 714 6.1E-17 T 31-10-2018 Y89_3114 91b2da156925c355e3121bb3198a17de 926 Gene3D G3DSA:3.30.1590.10 93 195 1.3E-19 T 31-10-2018 Y89_3114 91b2da156925c355e3121bb3198a17de 926 Gene3D G3DSA:3.20.20.80 2 92 3.3E-25 T 31-10-2018 Y89_3114 91b2da156925c355e3121bb3198a17de 926 SMART SM00642 12 506 2.2E-6 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3114 91b2da156925c355e3121bb3198a17de 926 Gene3D G3DSA:3.20.20.80 215 410 1.7E-35 T 31-10-2018 Y89_3114 91b2da156925c355e3121bb3198a17de 926 Gene3D G3DSA:3.20.20.80 715 821 6.7E-36 T 31-10-2018 Y89_3114 91b2da156925c355e3121bb3198a17de 926 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 918 3.6E-283 T 31-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 Y89_0445 8408a7e66db378749f056b80172fee00 189 SUPERFAMILY SSF81342 4 181 4.55E-42 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_0445 8408a7e66db378749f056b80172fee00 189 Pfam PF01292 Prokaryotic cytochrome b561 9 180 1.3E-31 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.40.50.720 14 312 3.5E-104 T 31-10-2018 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.30.70.260 328 408 3.1E-32 T 31-10-2018 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 1.9E-47 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF52283 7 136 3.4E-51 T 31-10-2018 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 1.5E-37 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 Gene3D G3DSA:3.40.50.720 109 297 3.5E-104 T 31-10-2018 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF51735 108 295 3.19E-52 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 SUPERFAMILY SSF55021 334 408 2.18E-16 T 31-10-2018 Y89_0336 9deeaffbb2ecd64557a13d509f548150 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 SUPERFAMILY SSF55681 71 260 7.46E-60 T 31-10-2018 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Pfam PF08279 HTH domain 2 54 5.6E-9 T 31-10-2018 IPR013196 Helix-turn-helix, type 11 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Gene3D G3DSA:3.30.930.10 65 261 3.2E-62 T 31-10-2018 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 SUPERFAMILY SSF50037 263 309 1.28E-6 T 31-10-2018 IPR008988 Transcriptional repressor, C-terminal Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 SUPERFAMILY SSF46785 3 55 4.62E-10 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 1 309 32.852 T 31-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Pfam PF03099 Biotin/lipoate A/B protein ligase family 89 201 2.8E-18 T 31-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 73 308 1.0E-56 T 31-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Gene3D G3DSA:2.30.30.100 264 312 2.8E-9 T 31-10-2018 Y89_0742 49cdc029bd6a2b08c93e31a5e5959fd6 312 Gene3D G3DSA:1.10.10.10 1 59 3.6E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4589 097852f94367db3e1550b8686897339d 125 Pfam PF16137 Domain of unknown function (DUF4845) 31 116 1.2E-23 T 31-10-2018 IPR032314 Protein of unknown function DUF4845 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 Pfam PF00710 Asparaginase, N-terminal 7 182 3.3E-46 T 31-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 Gene3D G3DSA:3.40.50.40 201 327 5.4E-32 T 31-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 SUPERFAMILY SSF53774 3 326 1.57E-87 T 31-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 31-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 86 96 - T 31-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 PIRSF PIRSF500176 3 324 1.1E-94 T 31-10-2018 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 SMART SM00870 6 315 5.3E-96 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 Gene3D G3DSA:3.40.50.1170 4 191 2.9E-53 T 31-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 PRINTS PR00139 Asparaginase/glutaminase family signature 85 103 1.7E-11 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 PRINTS PR00139 Asparaginase/glutaminase family signature 252 270 1.7E-11 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 1.7E-11 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_3001 35eb2f0a8803deb24c30ba0f55ee6368 328 PIRSF PIRSF001220 1 326 1.9E-83 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 419 9.5E-163 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 SUPERFAMILY SSF53901 3 261 1.15E-73 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 SMART SM00825 Beta-ketoacyl synthase 5 421 4.1E-13 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 SUPERFAMILY SSF53901 223 421 3.46E-64 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 Gene3D G3DSA:3.40.47.10 1 264 1.9E-84 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 PIRSF PIRSF000447 1 422 2.6E-161 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 377 2.5E-32 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 Gene3D G3DSA:3.40.47.10 270 422 3.9E-50 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 163 179 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site Y89_3981 4fed019f30deb8df9a4c30c4da04267f 422 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 256 2.8E-60 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 Gene3D G3DSA:1.10.10.60 158 263 7.9E-24 T 31-10-2018 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 SUPERFAMILY SSF46689 211 256 1.43E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 Pfam PF12833 Helix-turn-helix domain 180 256 8.6E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 Pfam PF02311 AraC-like ligand binding domain 21 99 6.6E-11 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 Gene3D G3DSA:2.60.120.10 2 95 4.2E-7 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 SMART SM00342 174 256 3.6E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 1.1E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 1.1E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4772 437e48f2c6cc6e64c9166cc3139f2c8c 267 SUPERFAMILY SSF51182 16 183 1.54E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_6316 04f27d0d35e93d61d90ec86fa1a041de 90 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 62 1.6E-10 T 31-10-2018 IPR022789 Antitoxin ParD Y89_6316 04f27d0d35e93d61d90ec86fa1a041de 90 Gene3D G3DSA:1.10.8.1250 10 89 4.2E-15 T 31-10-2018 IPR038296 Antitoxin ParD superfamily Y89_6316 04f27d0d35e93d61d90ec86fa1a041de 90 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 3 67 8.8E-17 T 31-10-2018 IPR022789 Antitoxin ParD Y89_6316 04f27d0d35e93d61d90ec86fa1a041de 90 SUPERFAMILY SSF47598 1 43 2.67E-11 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 Pfam PF09084 NMT1/THI5 like 62 243 1.1E-20 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 SMART SM00062 27 250 2.3E-4 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 Gene3D G3DSA:3.40.190.10 105 202 3.3E-53 T 31-10-2018 Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 SUPERFAMILY SSF53850 28 247 3.48E-46 T 31-10-2018 Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 326 3.4E-132 T 31-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 Gene3D G3DSA:3.40.190.10 28 237 3.3E-53 T 31-10-2018 Y89_1085 e1f980f5f19834b716aad0653ffe3e2a 337 Gene3D G3DSA:1.10.8.450 238 275 3.3E-53 T 31-10-2018 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 Gene3D G3DSA:3.10.310.10 117 247 2.9E-97 T 31-10-2018 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 PIRSF PIRSF016184 1 259 4.8E-60 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 SUPERFAMILY SSF54506 1 259 2.0E-86 T 31-10-2018 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 257 1.4E-42 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 Gene3D G3DSA:3.10.310.10 6 255 2.9E-97 T 31-10-2018 Y89_2262 d28483b94c6c4479d0b902b78eb8e317 259 Pfam PF02567 Phenazine biosynthesis-like protein 8 255 2.2E-62 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SMART SM00448 665 781 4.3E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SUPERFAMILY SSF47384 269 349 4.51E-23 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Gene3D G3DSA:1.20.1480.50 159 248 8.2E-7 T 31-10-2018 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Gene3D G3DSA:3.40.50.2300 659 785 4.0E-40 T 31-10-2018 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Gene3D G3DSA:1.20.120.160 805 912 6.8E-26 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Pfam PF01627 Hpt domain 826 907 5.3E-12 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SMART SM00073 817 913 1.1E-12 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 510 1.4E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4431 615d0d254d90f565416b1d4590602e66 925 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 36 167 3.5E-20 T 31-10-2018 IPR019247 Histidine kinase BarA, N-terminal Y89_4431 615d0d254d90f565416b1d4590602e66 925 Pfam PF00512 His Kinase A (phospho-acceptor) domain 284 348 5.9E-22 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SMART SM00304 191 243 1.4E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4431 615d0d254d90f565416b1d4590602e66 925 Pfam PF00072 Response regulator receiver domain 668 781 1.1E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SUPERFAMILY SSF158472 191 240 1.27E-5 T 31-10-2018 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SUPERFAMILY SSF52172 663 786 5.12E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4431 615d0d254d90f565416b1d4590602e66 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 5.0E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4431 615d0d254d90f565416b1d4590602e66 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 489 5.0E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4431 615d0d254d90f565416b1d4590602e66 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 5.0E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4431 615d0d254d90f565416b1d4590602e66 925 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 508 5.0E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SMART SM00387 395 511 3.4E-39 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4431 615d0d254d90f565416b1d4590602e66 925 Gene3D G3DSA:1.10.287.130 249 346 1.1E-30 T 31-10-2018 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SUPERFAMILY SSF47226 764 901 3.79E-22 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_4431 615d0d254d90f565416b1d4590602e66 925 SUPERFAMILY SSF55874 337 509 2.75E-46 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4431 615d0d254d90f565416b1d4590602e66 925 Gene3D G3DSA:3.30.565.10 347 514 1.4E-52 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4431 615d0d254d90f565416b1d4590602e66 925 SMART SM00388 283 348 4.0E-27 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1314 09102617ce660d1f345c287e37982cbf 231 Gene3D G3DSA:1.10.3680.10 104 230 2.2E-7 T 31-10-2018 IPR029024 TerB-like Y89_1314 09102617ce660d1f345c287e37982cbf 231 Pfam PF04391 Protein of unknown function (DUF533) 41 223 2.4E-66 T 31-10-2018 IPR007486 Inner membrane protein YebE Y89_1314 09102617ce660d1f345c287e37982cbf 231 SUPERFAMILY SSF158682 76 227 2.49E-22 T 31-10-2018 IPR029024 TerB-like Y89_4331 3a866d80e4929ea984caf6eb54a1ae6e 328 Pfam PF03060 Nitronate monooxygenase 6 311 2.7E-53 T 31-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Y89_4331 3a866d80e4929ea984caf6eb54a1ae6e 328 Gene3D G3DSA:3.20.20.70 1 328 4.9E-135 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4331 3a866d80e4929ea984caf6eb54a1ae6e 328 SUPERFAMILY SSF51412 5 318 9.03E-67 T 31-10-2018 Y89_4457 a1aabb92b61dcb1f91f54b4940de6de9 334 PIRSF PIRSF017617 1 334 2.3E-133 T 31-10-2018 IPR023603 Threonine aldolase Y89_4457 a1aabb92b61dcb1f91f54b4940de6de9 334 SUPERFAMILY SSF53383 4 332 2.89E-115 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4457 a1aabb92b61dcb1f91f54b4940de6de9 334 Gene3D G3DSA:3.40.640.10 1 246 7.9E-96 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4457 a1aabb92b61dcb1f91f54b4940de6de9 334 Pfam PF01212 Beta-eliminating lyase 5 283 1.6E-94 T 31-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Y89_4457 a1aabb92b61dcb1f91f54b4940de6de9 334 Gene3D G3DSA:3.90.1150.10 247 333 1.8E-28 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 Gene3D G3DSA:1.10.8.100 199 264 6.1E-26 T 31-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 39 66 - T 31-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 Gene3D G3DSA:3.40.50.150 1 198 3.3E-68 T 31-10-2018 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 SUPERFAMILY SSF53335 7 264 1.67E-79 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 Pfam PF00398 Ribosomal RNA adenine dimethylase 7 259 4.4E-64 T 31-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 7 262 57.816 T 31-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 7 261 1.9E-83 T 31-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Y89_0664 3db272a74fe50bc431bfed2d4ba68810 268 SMART SM00650 23 195 4.0E-88 T 31-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Y89_1586 e766a031d8b5f021a76cf60c0eb53172 456 Pfam PF07044 Protein of unknown function (DUF1329) 84 451 3.8E-153 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 101 133 0.04 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 187 218 180.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 317 348 220.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 142 173 3.7 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 238 269 14.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 SMART SM00564 62 93 0.0015 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 Gene3D G3DSA:2.130.10.10 16 380 6.0E-113 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_1226 514de07da0f16e93c832edbf1907d033 380 Pfam PF13360 PQQ-like domain 75 305 9.8E-51 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y89_1226 514de07da0f16e93c832edbf1907d033 380 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 5 377 7.0E-140 T 31-10-2018 IPR017687 Outer membrane protein assembly factor BamB Y89_1226 514de07da0f16e93c832edbf1907d033 380 SUPERFAMILY SSF50998 29 369 1.37E-77 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y89_1226 514de07da0f16e93c832edbf1907d033 380 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 379 39.532 T 31-10-2018 IPR017687 Outer membrane protein assembly factor BamB Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Gene3D G3DSA:2.40.50.100 174 241 1.3E-32 T 31-10-2018 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 15 103 5.9E-31 T 31-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Gene3D G3DSA:2.40.50.100 114 248 1.3E-32 T 31-10-2018 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 113 179 4.6E-16 T 31-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 SUPERFAMILY SSF50331 161 248 2.55E-10 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 PIRSF PIRSF005763 2 252 1.8E-83 T 31-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 79 2.1E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 SUPERFAMILY SSF50331 113 181 1.65E-16 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 SUPERFAMILY SSF46785 11 99 2.21E-26 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Gene3D G3DSA:1.10.10.10 4 103 7.2E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Pfam PF03459 TOBE domain 115 177 3.0E-16 T 31-10-2018 IPR005116 Transport-associated OB, type 1 Y89_0509 1c6a4c2137933ca9e50a65802b4a088e 252 Pfam PF03459 TOBE domain 186 247 1.5E-13 T 31-10-2018 IPR005116 Transport-associated OB, type 1 Y89_3723 01579ada7f45bc63d6f107f93cc2d338 309 Gene3D G3DSA:3.40.50.2300 133 305 3.6E-13 T 31-10-2018 Y89_2811 1b9e6368f69009e38998f56f58261747 331 Gene3D G3DSA:2.60.120.1440 116 249 1.9E-30 T 31-10-2018 Y89_2811 1b9e6368f69009e38998f56f58261747 331 Pfam PF04773 FecR protein 125 211 1.3E-20 T 31-10-2018 IPR006860 FecR protein Y89_2811 1b9e6368f69009e38998f56f58261747 331 Pfam PF16220 Domain of unknown function (DUF4880) 15 55 5.9E-14 T 31-10-2018 IPR032623 FecR, N-terminal Y89_2811 1b9e6368f69009e38998f56f58261747 331 PIRSF PIRSF018266 4 327 1.0E-89 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 SMART SM00090 2 234 5.3E-16 T 31-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 Gene3D G3DSA:1.10.510.10 132 282 6.6E-18 T 31-10-2018 Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 SUPERFAMILY SSF56112 18 225 1.8E-22 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 Pfam PF01163 RIO1 family 31 222 1.2E-47 T 31-10-2018 Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 31-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 Y89_5393 de2d06dbe9026273444e0edaed0ac32f 297 Gene3D G3DSA:3.30.200.20 16 126 7.4E-5 T 31-10-2018 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 577 596 1.0E-24 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 640 655 1.0E-24 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 611 624 1.0E-24 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 506 520 1.0E-24 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Gene3D G3DSA:3.40.120.10 657 775 3.3E-41 T 31-10-2018 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 780 857 2.6E-13 T 31-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 564 660 7.7E-28 T 31-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 418 547 1.3E-36 T 31-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Gene3D G3DSA:3.40.120.10 579 656 1.4E-36 T 31-10-2018 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 SUPERFAMILY SSF53738 561 662 9.81E-33 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Gene3D G3DSA:3.40.120.10 406 559 2.2E-63 T 31-10-2018 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 507 516 - T 31-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 SUPERFAMILY SSF53738 665 768 6.67E-33 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 SUPERFAMILY SSF53738 417 557 5.49E-39 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Gene3D G3DSA:3.30.310.50 776 868 1.2E-29 T 31-10-2018 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 SUPERFAMILY SSF55957 775 866 9.24E-26 T 31-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6060 9007241d695c45d6728b6e76a2fc3a43 868 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 665 769 5.9E-21 T 31-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Y89_6297 94409f5629df26021006a6f972a216d7 178 Gene3D G3DSA:1.10.520.20 2 107 5.7E-35 T 31-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 3.9E-49 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 19.687 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 3.7E-56 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 3.8E-24 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 3.8E-24 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 3.8E-24 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 3.8E-24 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 3.8E-24 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6297 94409f5629df26021006a6f972a216d7 178 SUPERFAMILY SSF47928 3 105 4.84E-25 T 31-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 604 29.748 T 31-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:3.40.1440.10 6 102 1.2E-29 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 539 9.1E-53 T 31-10-2018 IPR001162 UvrC family homology region Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF46600 190 243 3.27E-11 T 31-10-2018 IPR036876 UVR domain superfamily Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF01541 GIY-YIG catalytic domain 19 93 1.1E-9 T 31-10-2018 IPR000305 GIY-YIG endonuclease Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF47781 518 606 3.15E-24 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF14520 Helix-hairpin-helix domain 554 603 3.3E-12 T 31-10-2018 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:1.10.150.20 552 606 2.0E-24 T 31-10-2018 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SUPERFAMILY SSF82771 16 100 1.83E-21 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00278 553 572 0.61 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00278 585 604 0.59 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Pfam PF02151 UvrB/uvrC motif 214 234 6.7E-6 T 31-10-2018 IPR001943 UVR domain GO:0005515 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 SMART SM00465 17 98 1.4E-22 T 31-10-2018 IPR000305 GIY-YIG endonuclease Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 10 586 2.4E-186 T 31-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Y89_2503 e7ca09d4c346cbfa9531effcbf956395 608 Gene3D G3DSA:3.30.420.340 377 549 9.4E-51 T 31-10-2018 IPR038476 UvrC homology region 2 superfamily Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 SMART SM01011 4 138 2.6E-69 T 31-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 128 1.3E-36 T 31-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 Gene3D G3DSA:3.90.230.10 174 443 1.5E-101 T 31-10-2018 Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 Gene3D G3DSA:3.40.350.10 4 173 2.1E-56 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 SUPERFAMILY SSF55920 177 437 3.14E-86 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 Pfam PF00557 Metallopeptidase family M24 184 414 9.6E-65 T 31-10-2018 IPR000994 Peptidase M24 Y89_5911 d4ee2d180c1386a1a60933d03857e546 444 SUPERFAMILY SSF53092 4 176 1.41E-56 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Y89_3720 79ecd4a80c29b2a6a5c46ab7477fdd65 113 Pfam PF14333 Domain of unknown function (DUF4389) 8 83 2.6E-29 T 31-10-2018 IPR025498 Protein of unknown function DUF4389 Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 294 426 2.1E-37 T 31-10-2018 Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Pfam PF01261 Xylose isomerase-like TIM barrel 18 217 2.2E-37 T 31-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Gene3D G3DSA:3.10.180.10 438 631 1.5E-46 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Gene3D G3DSA:3.20.20.150 1 268 1.1E-72 T 31-10-2018 Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 441 565 6.6E-9 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 Gene3D G3DSA:3.10.180.10 290 437 4.1E-40 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 SUPERFAMILY SSF51658 1 270 5.39E-76 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_0249 ebf6749c0ae939c019993c04884bafe7 634 SUPERFAMILY SSF54593 292 621 4.18E-65 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 12 402 7.2E-86 T 31-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 Gene3D G3DSA:3.50.50.60 12 402 6.2E-68 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 33 409 1.9E-160 T 31-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 Gene3D G3DSA:1.10.8.260 279 334 6.2E-68 T 31-10-2018 IPR023166 HI0933-like insert domain superfamily Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 9.5E-5 T 31-10-2018 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 373 380 9.5E-5 T 31-10-2018 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 165 174 9.5E-5 T 31-10-2018 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 Pfam PF03486 HI0933-like protein 11 403 4.5E-111 T 31-10-2018 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 SUPERFAMILY SSF51905 12 408 8.17E-45 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 SUPERFAMILY SSF160996 210 350 6.54E-11 T 31-10-2018 Y89_1074 f7f9ca691c7d718d9147e283e4e0155d 413 Gene3D G3DSA:2.40.30.10 198 351 6.2E-68 T 31-10-2018 Y89_5114 4eb249a8b0e2c322f3fcc516c75fb503 743 SUPERFAMILY SSF52540 152 688 2.3E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5114 4eb249a8b0e2c322f3fcc516c75fb503 743 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 683 0.0 T 31-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 Y89_5114 4eb249a8b0e2c322f3fcc516c75fb503 743 Pfam PF12696 TraM recognition site of TraD and TraG 536 662 4.2E-11 T 31-10-2018 IPR032689 TraD/TraG, TraM recognition site Y89_5114 4eb249a8b0e2c322f3fcc516c75fb503 743 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 8 683 4.2E-252 T 31-10-2018 IPR022458 Conjugative coupling factor TraG/TraD Y89_5114 4eb249a8b0e2c322f3fcc516c75fb503 743 Gene3D G3DSA:3.40.50.300 451 688 8.5E-25 T 31-10-2018 Y89_6384 4eb249a8b0e2c322f3fcc516c75fb503 743 SUPERFAMILY SSF52540 152 688 2.3E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6384 4eb249a8b0e2c322f3fcc516c75fb503 743 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 683 0.0 T 31-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 Y89_6384 4eb249a8b0e2c322f3fcc516c75fb503 743 Pfam PF12696 TraM recognition site of TraD and TraG 536 662 4.2E-11 T 31-10-2018 IPR032689 TraD/TraG, TraM recognition site Y89_6384 4eb249a8b0e2c322f3fcc516c75fb503 743 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 8 683 4.2E-252 T 31-10-2018 IPR022458 Conjugative coupling factor TraG/TraD Y89_6384 4eb249a8b0e2c322f3fcc516c75fb503 743 Gene3D G3DSA:3.40.50.300 451 688 8.5E-25 T 31-10-2018 Y89_5235 73b71306645561c424f37be0cb4691fd 323 SUPERFAMILY SSF52283 17 141 5.48E-29 T 31-10-2018 Y89_5235 73b71306645561c424f37be0cb4691fd 323 Gene3D G3DSA:3.40.50.720 20 317 2.4E-110 T 31-10-2018 Y89_5235 73b71306645561c424f37be0cb4691fd 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 290 1.2E-51 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_5235 73b71306645561c424f37be0cb4691fd 323 Gene3D G3DSA:3.40.50.720 102 289 2.4E-110 T 31-10-2018 Y89_5235 73b71306645561c424f37be0cb4691fd 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_5235 73b71306645561c424f37be0cb4691fd 323 SUPERFAMILY SSF51735 106 291 4.16E-52 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5235 73b71306645561c424f37be0cb4691fd 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 20 320 3.6E-26 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 SUPERFAMILY SSF50494 107 330 1.01E-24 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 Gene3D G3DSA:2.40.10.10 225 322 4.5E-12 T 31-10-2018 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 Pfam PF13365 Trypsin-like peptidase domain 134 308 2.0E-17 T 31-10-2018 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 Pfam PF01223 DNA/RNA non-specific endonuclease 390 603 4.0E-51 T 31-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 SMART SM00477 397 604 1.2E-14 T 31-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 PRINTS PR00839 V8 serine protease family signature 282 298 9.4E-11 T 31-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 PRINTS PR00839 V8 serine protease family signature 134 151 9.4E-11 T 31-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 PRINTS PR00839 V8 serine protease family signature 300 312 9.4E-11 T 31-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 SUPERFAMILY SSF54060 386 601 2.41E-45 T 31-10-2018 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 SMART SM00892 396 604 4.5E-57 T 31-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 Gene3D G3DSA:2.40.10.10 134 224 4.5E-12 T 31-10-2018 Y89_4023 3f5d2e99b95507b37fbb49a6a069119f 642 Gene3D G3DSA:3.40.570.10 381 607 7.4E-39 T 31-10-2018 Y89_0066 61841e40a4f49f8cff558acf93d28826 306 SUPERFAMILY SSF46785 5 84 1.19E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0066 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:1.10.10.10 3 91 1.8E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0066 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:3.40.190.10 92 289 2.2E-67 T 31-10-2018 Y89_0066 61841e40a4f49f8cff558acf93d28826 306 SUPERFAMILY SSF53850 88 294 6.52E-52 T 31-10-2018 Y89_0066 61841e40a4f49f8cff558acf93d28826 306 Gene3D G3DSA:3.40.190.10 163 262 2.2E-67 T 31-10-2018 Y89_0066 61841e40a4f49f8cff558acf93d28826 306 Pfam PF03466 LysR substrate binding domain 88 291 4.9E-48 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0066 61841e40a4f49f8cff558acf93d28826 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.1E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3939 adf8a290f3899efb5fcea06495765853 363 Gene3D G3DSA:3.40.190.10 27 331 9.2E-133 T 31-10-2018 Y89_3939 adf8a290f3899efb5fcea06495765853 363 Gene3D G3DSA:3.40.190.10 130 356 9.2E-133 T 31-10-2018 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 175 194 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 152 166 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 29 45 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 212 231 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 262 281 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 101 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 86 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 307 333 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 66 4.5E-64 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 PIRSF PIRSF019574 2 363 2.5E-132 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3939 adf8a290f3899efb5fcea06495765853 363 SUPERFAMILY SSF53850 24 362 2.34E-99 T 31-10-2018 Y89_3939 adf8a290f3899efb5fcea06495765853 363 Pfam PF13416 Bacterial extracellular solute-binding protein 40 328 5.3E-31 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Gene3D G3DSA:1.20.140.10 231 409 5.6E-57 T 31-10-2018 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 248 385 1.9E-16 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 SUPERFAMILY SSF56645 28 230 1.09E-43 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 SUPERFAMILY SSF47203 241 386 2.74E-15 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 221 2.6E-8 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 PIRSF PIRSF016578 144 394 2.4E-23 T 31-10-2018 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 PIRSF PIRSF016578 6 93 8.0E-11 T 31-10-2018 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Gene3D G3DSA:1.10.540.10 17 130 1.3E-19 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Gene3D G3DSA:2.40.110.10 131 230 3.7E-30 T 31-10-2018 Y89_2930 f0c3dd589886f93cb9f38ab9d652357e 419 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 103 4.9E-6 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4089 238c4c6ed9ef0ec43c612e8588f02491 480 Pfam PF07690 Major Facilitator Superfamily 19 420 4.0E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4089 238c4c6ed9ef0ec43c612e8588f02491 480 SUPERFAMILY SSF103473 8 198 9.02E-40 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4089 238c4c6ed9ef0ec43c612e8588f02491 480 SUPERFAMILY SSF103473 213 469 6.93E-25 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4089 238c4c6ed9ef0ec43c612e8588f02491 480 Gene3D G3DSA:1.20.1720.10 15 227 4.3E-46 T 31-10-2018 Y89_4089 238c4c6ed9ef0ec43c612e8588f02491 480 Gene3D G3DSA:1.20.1250.20 274 471 1.8E-11 T 31-10-2018 Y89_2561 d261e060b3367fa9e5137dac5fae3443 527 Gene3D G3DSA:3.50.50.60 205 336 4.2E-13 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2561 d261e060b3367fa9e5137dac5fae3443 527 SUPERFAMILY SSF51905 1 515 2.02E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2561 d261e060b3367fa9e5137dac5fae3443 527 Pfam PF01593 Flavin containing amine oxidoreductase 16 513 3.4E-15 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y89_2561 d261e060b3367fa9e5137dac5fae3443 527 Gene3D G3DSA:3.50.50.60 1 197 1.3E-13 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1284 d0acd50c847c629539deb0382609f287 252 PIRSF PIRSF000386 5 250 1.7E-97 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y89_1284 d0acd50c847c629539deb0382609f287 252 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 27 225 1.7E-64 T 31-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y89_1284 d0acd50c847c629539deb0382609f287 252 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 5 234 7.9E-98 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y89_1284 d0acd50c847c629539deb0382609f287 252 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 252 114.841 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y89_1284 d0acd50c847c629539deb0382609f287 252 SUPERFAMILY SSF75217 5 249 3.4E-98 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_1284 d0acd50c847c629539deb0382609f287 252 Gene3D G3DSA:1.10.1270.20 171 252 1.5E-33 T 31-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Y89_1284 d0acd50c847c629539deb0382609f287 252 Gene3D G3DSA:3.40.1280.10 3 170 4.6E-66 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 Gene3D G3DSA:3.30.1130.10 51 181 6.9E-62 T 31-10-2018 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 37.02 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 SUPERFAMILY SSF55620 3 181 4.74E-79 T 31-10-2018 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 Pfam PF01227 GTP cyclohydrolase I 4 180 1.7E-76 T 31-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 4 181 3.6E-78 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 Gene3D G3DSA:1.10.286.10 1 50 7.5E-21 T 31-10-2018 Y89_3660 34e6fa3509af1020796fbc27caf66f39 181 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.6E-22 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 SUPERFAMILY SSF53850 91 290 2.29E-41 T 31-10-2018 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 Gene3D G3DSA:3.40.190.290 91 293 1.5E-49 T 31-10-2018 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 SUPERFAMILY SSF46785 1 84 1.18E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 Gene3D G3DSA:1.10.10.10 1 84 1.2E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3325 ea34b60d9ca0bad84a639785883b2cd1 306 Pfam PF03466 LysR substrate binding domain 91 289 4.0E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 Pfam PF02803 Thiolase, C-terminal domain 266 390 1.1E-47 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 7 391 9.6E-232 T 31-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 SUPERFAMILY SSF53901 4 262 8.52E-79 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 SUPERFAMILY SSF53901 266 390 2.88E-42 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 389 1.4E-134 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 Gene3D G3DSA:3.40.47.10 138 384 8.3E-154 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 Pfam PF00108 Thiolase, N-terminal domain 8 257 1.7E-84 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 PIRSF PIRSF000429 2 391 6.2E-132 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 5 391 60.012 T 31-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 Gene3D G3DSA:3.40.47.10 8 271 8.3E-154 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2006 e7b13bcb0468da4b05eaac77889bc3a4 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Gene3D G3DSA:2.180.10.10 813 1168 4.1E-33 T 31-10-2018 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Gene3D G3DSA:2.180.10.10 621 733 9.2E-6 T 31-10-2018 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1105 1168 1.1E-23 T 31-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF05593 RHS Repeat 636 671 4.8E-6 T 31-10-2018 IPR031325 RHS repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF05593 RHS Repeat 927 965 7.3E-5 T 31-10-2018 IPR031325 RHS repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF05593 RHS Repeat 489 524 8.9E-7 T 31-10-2018 IPR031325 RHS repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF05593 RHS Repeat 531 566 1.2E-6 T 31-10-2018 IPR031325 RHS repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF05593 RHS Repeat 595 630 3.1E-6 T 31-10-2018 IPR031325 RHS repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 SUPERFAMILY SSF69304 497 701 2.48E-5 T 31-10-2018 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Gene3D G3DSA:3.90.930.1 475 617 8.8E-6 T 31-10-2018 Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 PRINTS PR00394 RHS protein signature 1112 1132 3.0E-15 T 31-10-2018 IPR001826 RHS protein Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 PRINTS PR00394 RHS protein signature 1059 1079 3.0E-15 T 31-10-2018 IPR001826 RHS protein Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 PRINTS PR00394 RHS protein signature 1135 1154 3.0E-15 T 31-10-2018 IPR001826 RHS protein Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 367 399 7.5E-5 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 594 634 2.1E-7 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 531 570 5.6E-8 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 381 415 9.9E-5 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 489 528 1.9E-5 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 636 669 4.3E-7 T 31-10-2018 IPR006530 YD repeat Y89_2402 c8676104e3c94546aad7c112e4676b47 1317 Pfam PF03527 RHS protein 1065 1101 1.9E-14 T 31-10-2018 IPR001826 RHS protein Y89_5971 b1b719ec97155fae828361d8ba054766 389 Gene3D G3DSA:1.20.1250.20 1 376 1.6E-30 T 31-10-2018 Y89_5971 b1b719ec97155fae828361d8ba054766 389 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5971 b1b719ec97155fae828361d8ba054766 389 Pfam PF07690 Major Facilitator Superfamily 11 331 3.2E-16 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5971 b1b719ec97155fae828361d8ba054766 389 SUPERFAMILY SSF103473 5 381 1.29E-29 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 SMART SM00448 4 122 1.2E-9 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 SUPERFAMILY SSF52172 1 182 6.55E-21 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 SMART SM00052 139 384 2.7E-70 T 31-10-2018 IPR001633 EAL domain Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 SUPERFAMILY SSF141868 146 389 1.03E-72 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 Gene3D G3DSA:3.40.50.2300 1 139 6.0E-28 T 31-10-2018 Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 Pfam PF00563 EAL domain 146 379 1.2E-63 T 31-10-2018 IPR001633 EAL domain Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 Gene3D G3DSA:3.20.20.450 141 391 7.3E-83 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1076 4be8e675748b694d7dc4eaf2266c5d73 392 Pfam PF00072 Response regulator receiver domain 6 120 4.0E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0733 b757aaa09f11dc38795b3305faefaa29 322 Gene3D G3DSA:3.20.20.70 8 319 2.1E-70 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0733 b757aaa09f11dc38795b3305faefaa29 322 Pfam PF03060 Nitronate monooxygenase 89 303 1.1E-27 T 31-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Y89_0733 b757aaa09f11dc38795b3305faefaa29 322 SUPERFAMILY SSF51412 6 306 8.97E-59 T 31-10-2018 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 SMART SM00862 146 217 2.9E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 Gene3D G3DSA:3.40.50.2300 1 121 1.7E-35 T 31-10-2018 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 SMART SM00448 1 112 7.1E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 Gene3D G3DSA:1.10.10.10 123 220 3.5E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 SUPERFAMILY SSF52172 1 118 3.42E-36 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 SUPERFAMILY SSF46894 123 217 2.83E-25 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2431 10abdb2737a7e3547d6dbebb73c00631 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 216 3.7E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 ProSitePatterns PS01215 Mrp family signature. 206 222 - T 31-10-2018 IPR000808 Mrp, conserved site GO:0005524 Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 Gene3D G3DSA:3.30.300.130 2 91 9.5E-8 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 Pfam PF01883 Iron-sulfur cluster assembly protein 6 79 5.8E-16 T 31-10-2018 IPR002744 MIP18 family-like Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 Gene3D G3DSA:3.40.50.300 92 342 8.1E-85 T 31-10-2018 Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 SUPERFAMILY SSF117916 4 82 1.05E-14 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 343 36.457 T 31-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 342 6.9E-100 T 31-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Y89_1525 8c7d16f6a0192b115a98939d62e0d3fe 364 SUPERFAMILY SSF52540 89 327 8.55E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1333 f8e819f3cf6e7a64cc3d7889d6b5763f 173 Gene3D G3DSA:3.40.220.10 1 171 9.3E-70 T 31-10-2018 Y89_1333 f8e819f3cf6e7a64cc3d7889d6b5763f 173 SUPERFAMILY SSF52949 3 167 3.36E-62 T 31-10-2018 Y89_1333 f8e819f3cf6e7a64cc3d7889d6b5763f 173 Pfam PF01661 Macro domain 20 132 3.9E-43 T 31-10-2018 IPR002589 Macro domain Y89_1333 f8e819f3cf6e7a64cc3d7889d6b5763f 173 SMART SM00506 3 132 4.0E-50 T 31-10-2018 IPR002589 Macro domain Y89_2569 7733f54c343c7aa7361ba24baee54c7b 422 Gene3D G3DSA:1.20.1250.20 3 411 5.9E-44 T 31-10-2018 Y89_2569 7733f54c343c7aa7361ba24baee54c7b 422 SUPERFAMILY SSF103473 16 411 7.32E-51 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2569 7733f54c343c7aa7361ba24baee54c7b 422 Pfam PF07690 Major Facilitator Superfamily 31 257 2.6E-18 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 Pfam PF03054 tRNA methyl transferase 12 363 7.6E-137 T 31-10-2018 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 12 363 4.3E-139 T 31-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 Gene3D G3DSA:3.40.50.620 2 216 3.7E-93 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 SUPERFAMILY SSF52402 11 248 6.62E-57 T 31-10-2018 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 Gene3D G3DSA:2.40.30.10 286 370 2.2E-28 T 31-10-2018 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 Gene3D G3DSA:2.30.30.280 217 284 1.7E-26 T 31-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Y89_2462 1c3d17fc5b10c9779e799f1d9d6b993a 375 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 11 364 40.513 T 31-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 31-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 758 1.8E-55 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:3.40.50.300 344 544 1.3E-70 T 31-10-2018 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:3.40.50.300 550 762 2.5E-88 T 31-10-2018 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 842 2.9E-25 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 334 4.9E-12 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF81923 4 155 1.96E-38 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 5.5E-42 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 5.5E-42 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 5.5E-42 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 5.5E-42 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:1.10.8.60 764 854 1.5E-27 T 31-10-2018 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:3.40.50.300 149 342 2.0E-73 T 31-10-2018 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF52540 546 852 1.67E-81 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.2E-9 T 31-10-2018 IPR004176 Clp, N-terminal Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.1E-12 T 31-10-2018 IPR004176 Clp, N-terminal Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 Gene3D G3DSA:1.10.1780.10 1 148 5.0E-32 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SUPERFAMILY SSF52540 159 545 2.51E-98 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SMART SM00382 597 765 4.0E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SMART SM00382 198 343 2.1E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5148 9bd3b37841e722ae71996bd433ec927a 854 SMART SM01086 764 853 1.4E-36 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_2120 62fab197745f7905b4461fd413aaae0a 282 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 248 1.9E-17 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2120 62fab197745f7905b4461fd413aaae0a 282 SUPERFAMILY SSF53850 34 252 2.85E-31 T 31-10-2018 Y89_2120 62fab197745f7905b4461fd413aaae0a 282 Gene3D G3DSA:3.40.190.10 38 250 1.5E-21 T 31-10-2018 Y89_2120 62fab197745f7905b4461fd413aaae0a 282 SMART SM00062 31 262 0.0061 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2120 62fab197745f7905b4461fd413aaae0a 282 Gene3D G3DSA:3.40.190.10 121 217 1.5E-21 T 31-10-2018 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 263 339 1.5E-21 T 31-10-2018 IPR006260 TonB/TolA, C-terminal Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 Gene3D G3DSA:3.30.2420.10 256 334 1.1E-24 T 31-10-2018 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 297 314 1.9E-30 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 278 296 1.9E-30 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 170 180 1.9E-30 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 PRINTS PR01374 Gram-negative bacterial tonB protein signature 257 278 1.9E-30 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 SUPERFAMILY SSF74653 256 337 1.31E-24 T 31-10-2018 Y89_6271 3f4ebed0ff27bd8b4ffa051291cb3cef 343 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 262 338 4.2E-21 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 SUPERFAMILY SSF52540 6 242 1.47E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 Gene3D G3DSA:3.40.50.300 4 232 4.3E-60 T 31-10-2018 Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 270 349 6.1E-17 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 5 345 3.0E-174 T 31-10-2018 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 215 5.6E-59 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 SUPERFAMILY SSF90002 268 349 2.75E-19 T 31-10-2018 Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 SMART SM00833 258 349 9.5E-8 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_2076 b7045dba80bfe42f987eadbbcec832b5 350 Gene3D G3DSA:3.30.1220.10 234 348 2.0E-20 T 31-10-2018 IPR036627 CobW-like, C-terminal domain superfamily Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 SMART SM00729 13 216 7.8E-12 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 329 1.1E-111 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 184 312 3.2E-38 T 31-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 329 40.501 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF13353 4Fe-4S single cluster domain 20 108 7.0E-8 T 31-10-2018 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 SUPERFAMILY SSF102114 5 280 1.57E-74 T 31-10-2018 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 31-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 Pfam PF04055 Radical SAM superfamily 18 177 6.8E-30 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_1156 016fcd2c3fb6f303c1f15860b5e371cb 329 Gene3D G3DSA:3.20.20.70 2 328 3.9E-84 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 Pfam PF00202 Aminotransferase class-III 19 382 3.0E-79 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 SUPERFAMILY SSF53383 15 384 4.26E-101 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0552 38a99769524a01e0e8ed94f0060af355 393 PIRSF PIRSF000521 157 385 3.2E-27 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 PIRSF PIRSF000521 3 142 1.7E-5 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 Gene3D G3DSA:3.40.640.10 53 291 4.8E-113 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 210 247 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0552 38a99769524a01e0e8ed94f0060af355 393 Gene3D G3DSA:3.90.1150.10 20 375 4.8E-113 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5944 064f1c45b32b7742ef34f1ad90e092e8 160 Gene3D G3DSA:1.20.120.1370 1 153 1.7E-47 T 31-10-2018 IPR038309 Rsd/AlgQ superfamily Y89_5944 064f1c45b32b7742ef34f1ad90e092e8 160 PIRSF PIRSF016548 1 155 1.6E-68 T 31-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 Y89_5944 064f1c45b32b7742ef34f1ad90e092e8 160 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 145 6.0E-53 T 31-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 Y89_2097 944634fcd3b84aae49989bf8cab20294 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 20 122 1.4E-15 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_2097 944634fcd3b84aae49989bf8cab20294 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 207 1.9E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2097 944634fcd3b84aae49989bf8cab20294 237 Gene3D G3DSA:1.10.3720.10 9 229 3.3E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2097 944634fcd3b84aae49989bf8cab20294 237 SUPERFAMILY SSF161098 17 217 4.19E-37 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 Pfam PF00226 DnaJ domain 190 245 2.9E-8 T 31-10-2018 IPR001623 DnaJ domain Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 SUPERFAMILY SSF46565 130 244 3.79E-18 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 230 250 2.7E-6 T 31-10-2018 IPR001623 DnaJ domain Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 206 221 2.7E-6 T 31-10-2018 IPR001623 DnaJ domain Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 PRINTS PR00625 DnaJ domain signature 188 206 2.7E-6 T 31-10-2018 IPR001623 DnaJ domain Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 SUPERFAMILY SSF158682 21 175 2.22E-11 T 31-10-2018 IPR029024 TerB-like Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 Gene3D G3DSA:1.10.3680.10 51 176 1.1E-6 T 31-10-2018 IPR029024 TerB-like Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 SMART SM00271 185 250 2.3E-10 T 31-10-2018 IPR001623 DnaJ domain Y89_0672 6494e765d38196e4b0efa62ab8754b96 252 Gene3D G3DSA:1.10.287.110 177 250 1.2E-9 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_0270 303f625b303da74bf652cede743947c1 1019 Gene3D G3DSA:2.40.50.230 358 456 2.4E-41 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_0270 303f625b303da74bf652cede743947c1 1019 SUPERFAMILY SSF69279 197 365 2.72E-31 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 Gene3D G3DSA:3.30.1920.30 221 284 4.7E-79 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 SUPERFAMILY SSF69255 364 451 1.31E-33 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 475 581 5.6E-34 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain Y89_0270 303f625b303da74bf652cede743947c1 1019 Gene3D G3DSA:2.30.110.50 21 328 4.7E-79 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 493 3.1E-160 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_0270 303f625b303da74bf652cede743947c1 1019 SUPERFAMILY SSF69349 442 493 1.8E-9 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 615 758 1.0E-47 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal Y89_0270 303f625b303da74bf652cede743947c1 1019 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 19 502 2.2E-120 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_0270 303f625b303da74bf652cede743947c1 1019 Gene3D G3DSA:3.55.50.10 96 187 4.7E-79 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 Pfam PF05954 Phage late control gene D protein (GPD) 27 327 1.0E-74 T 31-10-2018 Y89_0270 303f625b303da74bf652cede743947c1 1019 SUPERFAMILY SSF69279 9 182 2.13E-47 T 31-10-2018 Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 Pfam PF14821 Threonine synthase N terminus 2 80 3.1E-28 T 31-10-2018 IPR029144 Threonine synthase, N-terminal Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.40.50.1100 96 431 1.4E-151 T 31-10-2018 Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.90.1380.10 1 86 1.6E-30 T 31-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 92 398 1.1E-24 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 Gene3D G3DSA:3.40.50.1100 108 444 1.4E-151 T 31-10-2018 Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 TIGRFAM TIGR00260 thrC: threonine synthase 67 423 4.0E-80 T 31-10-2018 IPR004450 Threonine synthase-like Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 SUPERFAMILY SSF53686 1 461 6.42E-165 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_1293 db58a4f9a26c969173e94e2adf940a41 469 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 314 53.856 T 31-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 SUPERFAMILY SSF51395 3 311 4.03E-69 T 31-10-2018 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 Gene3D G3DSA:1.20.225.30 247 317 3.2E-12 T 31-10-2018 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 Pfam PF01207 Dihydrouridine synthase (Dus) 5 248 1.9E-64 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 PIRSF PIRSF006621 1 319 4.1E-76 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 31-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_1890 89973845fe45e36b8b01cbaa37142cc1 319 Gene3D G3DSA:3.20.20.70 1 240 2.3E-74 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 28 194 1.4E-62 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 1.0E-12 T 31-10-2018 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 158 3.6E-5 T 31-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 PIRSF PIRSF016262 4 215 2.1E-57 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 Gene3D G3DSA:3.30.930.10 2 203 3.0E-60 T 31-10-2018 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 SUPERFAMILY SSF55681 6 204 2.57E-66 T 31-10-2018 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 Hamap MF_00013 Octanoyltransferase [lipB]. 4 205 37.338 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1027 1b70f9ba5b30266d5b24540a1af2b04c 217 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 31-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Pfam PF14863 Alkyl sulfatase dimerisation 381 519 3.0E-56 T 31-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Gene3D G3DSA:3.60.15.30 20 379 2.4E-165 T 31-10-2018 Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 SMART SM00849 122 344 5.1E-24 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 SUPERFAMILY SSF55718 531 652 1.01E-34 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Gene3D G3DSA:3.30.1050.10 521 658 3.5E-42 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Gene3D G3DSA:1.25.40.880 380 520 6.1E-59 T 31-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 SUPERFAMILY SSF56281 22 521 8.82E-154 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Pfam PF14864 Alkyl sulfatase C-terminal 529 652 1.4E-32 T 31-10-2018 IPR029229 Alkyl sulfatase, C-terminal Y89_4619 30708fd4a14f70a3de1bc404dbd4562d 658 Pfam PF00753 Metallo-beta-lactamase superfamily 118 344 1.1E-47 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.4E-13 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.4E-13 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.4E-13 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 Pfam PF00117 Glutamine amidotransferase class-I 4 191 1.6E-55 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 Gene3D G3DSA:3.40.50.880 1 193 3.3E-63 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 SUPERFAMILY SSF52317 1 192 1.34E-54 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 2.1E-87 T 31-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.0E-5 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.0E-5 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 47 56 2.3E-37 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 169 182 2.3E-37 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 99 107 2.3E-37 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 2 16 2.3E-37 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 119 131 2.3E-37 T 31-10-2018 Y89_0722 81f2e19f1672f5f9253ba0f6d55e9343 201 PRINTS PR00097 Anthranilate synthase component II signature 74 85 2.3E-37 T 31-10-2018 Y89_2688 22e885bd87c36e9d6da8485e406439d0 205 Pfam PF10077 Uncharacterized protein conserved in bacteria (DUF2314) 34 96 1.3E-6 T 31-10-2018 IPR018756 Domain of unknown function DUF2314 Y89_2688 22e885bd87c36e9d6da8485e406439d0 205 Pfam PF09951 Protein of unknown function (DUF2185) 115 198 3.3E-31 T 31-10-2018 IPR018689 Domain of unknown function DUF2185 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 27 128 1.6E-10 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 248 380 3.7E-19 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 Gene3D G3DSA:1.20.140.10 230 402 8.5E-57 T 31-10-2018 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 Gene3D G3DSA:1.10.540.10 22 130 8.3E-23 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 15 404 2.6E-196 T 31-10-2018 IPR023922 Sulphate-starvation-induced SfnB Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 Gene3D G3DSA:2.40.110.10 131 229 5.7E-30 T 31-10-2018 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 SUPERFAMILY SSF47203 233 399 1.06E-25 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 SUPERFAMILY SSF56645 27 229 2.75E-48 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2853 34e9a09a628bbf5f5986e2000b3782f9 405 PIRSF PIRSF016578 7 396 7.2E-30 T 31-10-2018 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 Gene3D G3DSA:3.20.140.10 1 398 2.3E-177 T 31-10-2018 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 171 397 9.1E-83 T 31-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 SUPERFAMILY SSF51690 122 396 3.2E-89 T 31-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 398 48.52 T 31-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 PIRSF PIRSF000484 1 385 8.5E-63 T 31-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 397 7.4E-150 T 31-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_4863 3e6dc9422f60ef92f92546339c42688f 398 SUPERFAMILY SSF54675 6 140 2.55E-42 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 5.1E-39 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 5.1E-39 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 5.1E-39 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 5.1E-39 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 31-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Y89_3746 25b3afda26f1b15efac299242e14f132 295 Gene3D G3DSA:3.40.50.720 1 123 1.1E-49 T 31-10-2018 Y89_3746 25b3afda26f1b15efac299242e14f132 295 SUPERFAMILY SSF51735 1 122 1.93E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3746 25b3afda26f1b15efac299242e14f132 295 Gene3D G3DSA:3.40.50.261 124 288 1.4E-76 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_3746 25b3afda26f1b15efac299242e14f132 295 PIRSF PIRSF001553 1 290 1.3E-133 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3746 25b3afda26f1b15efac299242e14f132 295 SUPERFAMILY SSF52210 123 289 1.16E-57 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_3746 25b3afda26f1b15efac299242e14f132 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 7.7E-145 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3746 25b3afda26f1b15efac299242e14f132 295 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 42.831 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_3746 25b3afda26f1b15efac299242e14f132 295 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 31-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Y89_3746 25b3afda26f1b15efac299242e14f132 295 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_3746 25b3afda26f1b15efac299242e14f132 295 SMART SM00881 4 100 1.5E-36 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_3746 25b3afda26f1b15efac299242e14f132 295 Pfam PF00549 CoA-ligase 151 270 6.1E-22 T 31-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 31-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 31-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.7E-47 T 31-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.4E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.4E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.4E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.4E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.12 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 Gene3D G3DSA:3.90.1170.10 1 137 1.2E-54 T 31-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.2E-60 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0766 eea4470f9113d11957d63cc6a572200f 137 SUPERFAMILY SSF54686 1 134 4.19E-53 T 31-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 13 1166 20.286 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 SUPERFAMILY SSF52540 389 826 4.67E-93 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Gene3D G3DSA:1.10.486.10 478 687 3.4E-192 T 31-10-2018 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Gene3D G3DSA:3.40.50.10930 16 331 7.1E-117 T 31-10-2018 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Gene3D G3DSA:3.40.50.300 362 830 3.4E-192 T 31-10-2018 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 SUPERFAMILY SSF52540 13 374 1.95E-103 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Gene3D G3DSA:1.10.10.160 100 215 7.1E-117 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 PIRSF PIRSF000980 13 1171 0.0 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 14 829 1.8E-286 T 31-10-2018 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 14 1128 0.0 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Y89_4769 d1b33fe9cbe03cde29b6b38ef62c4257 1171 SUPERFAMILY SSF52980 841 1163 4.61E-63 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 23 172 3.6E-38 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 191 340 5.8E-18 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 81 94 - T 31-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 9 345 27.142 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 SUPERFAMILY SSF55120 13 342 3.6E-95 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 Gene3D G3DSA:3.30.2340.10 172 304 5.4E-108 T 31-10-2018 Y89_1400 21d849d24ec0d234f34fee64c065dbc4 355 Gene3D G3DSA:3.30.2350.20 21 340 5.4E-108 T 31-10-2018 Y89_2915 618922e87eb2a5663a95ac49507998a2 310 Gene3D G3DSA:1.10.3720.10 66 308 5.7E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2915 618922e87eb2a5663a95ac49507998a2 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 306 6.6E-17 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2915 618922e87eb2a5663a95ac49507998a2 310 SUPERFAMILY SSF161098 70 295 1.7E-48 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 SUPERFAMILY SSF56935 50 742 1.31E-130 T 31-10-2018 Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 Pfam PF00593 TonB dependent receptor 273 740 4.3E-55 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 Gene3D G3DSA:2.170.130.10 38 183 1.2E-43 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 178 2.0E-29 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 Gene3D G3DSA:2.40.170.20 189 742 4.2E-203 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 725 742 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_4428 e6de53fc0047ab1376c6640dc5851361 742 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 742 1.7E-87 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_6220 bffef71379ca405015767e30450b610e 444 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y89_6220 bffef71379ca405015767e30450b610e 444 Pfam PF00375 Sodium:dicarboxylate symporter family 8 410 3.0E-119 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y89_6220 bffef71379ca405015767e30450b610e 444 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y89_6220 bffef71379ca405015767e30450b610e 444 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 427 42.692 T 31-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 154 176 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 202 221 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 PRINTS PR00173 Glutamate-aspartate symporter signature 364 384 4.2E-53 T 31-10-2018 Y89_6220 bffef71379ca405015767e30450b610e 444 Gene3D G3DSA:1.10.3860.10 2 423 3.9E-138 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_6220 bffef71379ca405015767e30450b610e 444 SUPERFAMILY SSF118215 8 411 6.8E-125 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_4964 a3630f1442726f9fecfa3794467981d0 480 Pfam PF01523 Putative modulator of DNA gyrase 38 330 2.8E-69 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y89_4964 a3630f1442726f9fecfa3794467981d0 480 PIRSF PIRSF004919 20 479 2.3E-140 T 31-10-2018 IPR025502 TldD Y89_4964 a3630f1442726f9fecfa3794467981d0 480 SUPERFAMILY SSF111283 26 478 1.28E-131 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Y89_4964 a3630f1442726f9fecfa3794467981d0 480 Gene3D G3DSA:3.30.2290.10 21 238 1.4E-19 T 31-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Y89_1058 dd489196d53138eeafbe766819b3b55f 169 Pfam PF13412 Winged helix-turn-helix DNA-binding 14 60 3.7E-23 T 31-10-2018 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 41 3.2E-19 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 41 60 3.2E-19 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 14 30 3.2E-19 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 Gene3D G3DSA:3.30.70.920 67 152 3.2E-27 T 31-10-2018 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 ProSitePatterns PS00519 AsnC-type HTH domain signature. 32 58 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y89_1058 dd489196d53138eeafbe766819b3b55f 169 SMART SM00344 14 124 2.0E-43 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_1058 dd489196d53138eeafbe766819b3b55f 169 Pfam PF01037 Lrp/AsnC ligand binding domain 80 155 1.9E-22 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_1058 dd489196d53138eeafbe766819b3b55f 169 Gene3D G3DSA:1.10.10.10 15 66 4.8E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1058 dd489196d53138eeafbe766819b3b55f 169 SUPERFAMILY SSF46785 5 132 3.13E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1401 7e8c75274b20cf78644806a1b57df0f9 249 SUPERFAMILY SSF64167 1 246 4.05E-80 T 31-10-2018 Y89_1401 7e8c75274b20cf78644806a1b57df0f9 249 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 2.8E-60 T 31-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y89_1401 7e8c75274b20cf78644806a1b57df0f9 249 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 248 38.027 T 31-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y89_1401 7e8c75274b20cf78644806a1b57df0f9 249 Gene3D G3DSA:3.40.1210.10 1 248 5.5E-85 T 31-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y89_1401 7e8c75274b20cf78644806a1b57df0f9 249 Pfam PF01975 Survival protein SurE 3 181 7.9E-55 T 31-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Y89_1479 185e1a98eab8ef662ae37f105eb1e1b2 520 PIRSF PIRSF500217 1 520 6.1E-164 T 31-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 Y89_1479 185e1a98eab8ef662ae37f105eb1e1b2 520 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 148 355 8.4E-27 T 31-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT Y89_1479 185e1a98eab8ef662ae37f105eb1e1b2 520 PIRSF PIRSF016636 1 446 6.4E-159 T 31-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB Y89_1479 185e1a98eab8ef662ae37f105eb1e1b2 520 PIRSF PIRSF016636 474 520 0.084 T 31-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB Y89_3549 b85ff5de006fb225cc577b1c61496313 403 TIGRFAM TIGR00886 2A0108: nitrite transporter 13 347 6.0E-100 T 31-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 Y89_3549 b85ff5de006fb225cc577b1c61496313 403 Gene3D G3DSA:1.20.1250.20 2 388 1.0E-83 T 31-10-2018 Y89_3549 b85ff5de006fb225cc577b1c61496313 403 Pfam PF07690 Major Facilitator Superfamily 23 348 5.8E-38 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3549 b85ff5de006fb225cc577b1c61496313 403 SUPERFAMILY SSF103473 6 390 1.22E-55 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 SUPERFAMILY SSF46785 9 142 2.55E-32 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 SMART SM00347 26 127 5.5E-23 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.3E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 6.3E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 6.3E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.3E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 Pfam PF12802 MarR family 31 91 1.1E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1668 ed3f30ea2fc14f7b8d451f59e7eb20e4 144 Gene3D G3DSA:1.10.10.10 1 144 9.0E-40 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2115 658429b415242f5014ba5114270a0b46 415 Gene3D G3DSA:3.40.50.150 230 405 2.0E-68 T 31-10-2018 Y89_2115 658429b415242f5014ba5114270a0b46 415 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 236 357 4.0E-35 T 31-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 Y89_2115 658429b415242f5014ba5114270a0b46 415 PIRSF PIRSF036428 7 407 1.5E-139 T 31-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 Y89_2115 658429b415242f5014ba5114270a0b46 415 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 13 198 6.5E-42 T 31-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 Y89_2115 658429b415242f5014ba5114270a0b46 415 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 11 188 8.1E-17 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_2115 658429b415242f5014ba5114270a0b46 415 Gene3D G3DSA:3.40.1010.10 10 109 6.8E-13 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_2115 658429b415242f5014ba5114270a0b46 415 SUPERFAMILY SSF53335 210 385 4.18E-30 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2115 658429b415242f5014ba5114270a0b46 415 SUPERFAMILY SSF53790 10 210 2.88E-36 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 Pfam PF01180 Dihydroorotate dehydrogenase 4 305 1.4E-27 T 31-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 Gene3D G3DSA:3.30.70.20 317 414 1.2E-23 T 31-10-2018 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_0462 532a4283a9c52c33331d9bab69702af4 424 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 4 319 7.5E-50 T 31-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 SUPERFAMILY SSF51395 1 319 9.33E-76 T 31-10-2018 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 Gene3D G3DSA:3.20.20.70 4 310 2.9E-99 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 SUPERFAMILY SSF54862 317 401 3.52E-13 T 31-10-2018 Y89_0462 532a4283a9c52c33331d9bab69702af4 424 Pfam PF14697 4Fe-4S dicluster domain 338 400 3.9E-22 T 31-10-2018 Y89_3934 e8a9c8b74375d89b6a021c2629da7c3e 242 Pfam PF00753 Metallo-beta-lactamase superfamily 29 220 5.7E-22 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3934 e8a9c8b74375d89b6a021c2629da7c3e 242 Gene3D G3DSA:3.60.15.10 3 237 6.9E-39 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3934 e8a9c8b74375d89b6a021c2629da7c3e 242 SMART SM00849 32 220 1.4E-32 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3934 e8a9c8b74375d89b6a021c2629da7c3e 242 SUPERFAMILY SSF56281 15 233 1.54E-42 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2837 dc24ed038600b86b5411070ba9c3c8f6 443 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 20 386 7.3E-34 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_2837 dc24ed038600b86b5411070ba9c3c8f6 443 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 7 412 2.1E-75 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 SUPERFAMILY SSF51182 7 281 1.85E-85 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 Gene3D G3DSA:2.60.120.10 18 279 7.0E-96 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 Gene3D G3DSA:2.60.120.10 144 253 7.0E-96 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 Pfam PF02678 Pirin 22 122 1.2E-37 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 PIRSF PIRSF006232 3 285 2.9E-97 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y89_1774 08774e98d416bf2b789f5d86d4484c2a 285 Pfam PF05726 Pirin C-terminal cupin domain 181 282 9.6E-33 T 31-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y89_1993 c2478f5563a59c42291df0760875b819 531 Pfam PF01565 FAD binding domain 88 215 4.8E-29 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_1993 c2478f5563a59c42291df0760875b819 531 Gene3D G3DSA:3.40.462.40 69 485 8.3E-141 T 31-10-2018 Y89_1993 c2478f5563a59c42291df0760875b819 531 SUPERFAMILY SSF56176 56 264 2.85E-42 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_1993 c2478f5563a59c42291df0760875b819 531 Pfam PF02913 FAD linked oxidases, C-terminal domain 266 526 1.6E-46 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y89_1993 c2478f5563a59c42291df0760875b819 531 SUPERFAMILY SSF55103 269 530 9.65E-37 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_1993 c2478f5563a59c42291df0760875b819 531 Gene3D G3DSA:3.30.465.40 58 264 8.3E-141 T 31-10-2018 Y89_5996 62b35feb97b8f67882c81c4a10302e74 275 Gene3D G3DSA:1.10.3720.10 78 274 2.0E-34 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5996 62b35feb97b8f67882c81c4a10302e74 275 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 33 274 1.2E-88 T 31-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 Y89_5996 62b35feb97b8f67882c81c4a10302e74 275 SUPERFAMILY SSF161098 80 264 3.01E-35 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5996 62b35feb97b8f67882c81c4a10302e74 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 274 1.3E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 19 227 8.3E-91 T 31-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:3.30.565.10 733 877 4.7E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SUPERFAMILY SSF55781 495 637 3.05E-5 T 31-10-2018 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 767 873 9.3E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Pfam PF00582 Universal stress protein family 248 358 4.3E-11 T 31-10-2018 IPR006016 UspA Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:1.10.287.130 644 717 8.7E-18 T 31-10-2018 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SUPERFAMILY SSF47384 646 719 1.9E-16 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:3.40.50.300 16 226 1.5E-96 T 31-10-2018 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SMART SM00388 650 718 1.2E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SMART SM00387 762 874 1.5E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SUPERFAMILY SSF55874 708 876 1.57E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:1.20.120.620 385 490 5.9E-23 T 31-10-2018 IPR038318 KdpD, transmembrane domain superfamily Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Pfam PF13493 Domain of unknown function (DUF4118) 390 494 2.3E-26 T 31-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:3.40.50.620 231 361 4.5E-14 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 SUPERFAMILY SSF52402 248 358 1.05E-13 T 31-10-2018 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Gene3D G3DSA:3.30.450.40 500 643 1.0E-24 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 PRINTS PR00344 Bacterial sensor protein C-terminal signature 833 851 8.1E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 813 8.1E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 PRINTS PR00344 Bacterial sensor protein C-terminal signature 858 871 8.1E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 PRINTS PR00344 Bacterial sensor protein C-terminal signature 817 827 8.1E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3699 659ed97f56fd6f053cde472fe6af9f90 885 Pfam PF00512 His Kinase A (phospho-acceptor) domain 651 718 4.0E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 Gene3D G3DSA:3.40.47.10 1 173 4.2E-67 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 322 2.7E-32 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 105 185 1.2E-24 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 Gene3D G3DSA:3.40.47.10 174 330 1.5E-53 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 322 63.647 T 31-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 322 4.8E-99 T 31-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1676 5c9370c1fd23f1ce52bf7198911d4a86 330 SUPERFAMILY SSF53901 8 323 1.83E-56 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4411 01b9c7502b996503e0a6b57c41545812 234 Gene3D G3DSA:3.40.50.300 1 164 8.9E-35 T 31-10-2018 Y89_4411 01b9c7502b996503e0a6b57c41545812 234 Gene3D G3DSA:1.10.8.60 168 233 1.2E-27 T 31-10-2018 Y89_4411 01b9c7502b996503e0a6b57c41545812 234 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 5 232 9.4E-90 T 31-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 Y89_4411 01b9c7502b996503e0a6b57c41545812 234 SUPERFAMILY SSF52540 14 213 9.68E-26 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4411 01b9c7502b996503e0a6b57c41545812 234 Pfam PF00308 Bacterial dnaA protein 14 212 8.7E-20 T 31-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Y89_1013 bd1bb94a39fcb7312c02836ddafa19e3 437 Pfam PF09335 SNARE associated Golgi protein 38 160 1.2E-18 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_1013 bd1bb94a39fcb7312c02836ddafa19e3 437 Pfam PF01569 PAP2 superfamily 285 397 5.0E-21 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_1013 bd1bb94a39fcb7312c02836ddafa19e3 437 SUPERFAMILY SSF48317 208 418 6.07E-45 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Y89_1013 bd1bb94a39fcb7312c02836ddafa19e3 437 Gene3D G3DSA:1.20.144.10 311 406 9.5E-23 T 31-10-2018 Y89_1013 bd1bb94a39fcb7312c02836ddafa19e3 437 SMART SM00014 281 391 5.4E-16 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 SUPERFAMILY SSF46785 6 94 5.16E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 Gene3D G3DSA:1.10.10.10 5 66 1.4E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 Gene3D G3DSA:1.20.120.530 76 216 3.3E-24 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 63 6.3E-12 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 SMART SM00895 75 212 3.0E-22 T 31-10-2018 IPR011711 GntR, C-terminal Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 Pfam PF07729 FCD domain 77 211 1.0E-17 T 31-10-2018 IPR011711 GntR, C-terminal Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 SUPERFAMILY SSF48008 71 214 1.7E-17 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_5576 512adfe37de5c913e876c2b51b63b3c9 237 SMART SM00345 8 65 3.3E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 2 20 1.4E-20 T 31-10-2018 IPR006015 Universal stress protein A Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 109 121 1.4E-20 T 31-10-2018 IPR006015 Universal stress protein A Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 PRINTS PR01438 Universal stress protein signature 127 149 1.4E-20 T 31-10-2018 IPR006015 Universal stress protein A Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 SUPERFAMILY SSF52402 1 150 3.89E-34 T 31-10-2018 Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 Gene3D G3DSA:3.40.50.620 1 149 7.5E-38 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1700 435bf2c8bd6046df6b5c8f11431d9c5b 151 Pfam PF00582 Universal stress protein family 1 149 1.3E-32 T 31-10-2018 IPR006016 UspA Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 Gene3D G3DSA:3.40.50.300 4 227 2.2E-70 T 31-10-2018 Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 SMART SM00382 35 223 1.8E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 Pfam PF00005 ABC transporter 26 174 8.6E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 3.4E-98 T 31-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 Y89_2033 1c745eb8e1c5aedfbd64aefdc8290a8f 227 SUPERFAMILY SSF52540 6 225 1.73E-69 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF54980 390 465 5.76E-18 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF03144 Elongation factor Tu domain 2 311 376 3.1E-10 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.9E-16 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 135 144 7.6E-12 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 13 26 7.6E-12 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 83 93 7.6E-12 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 99 110 7.6E-12 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 PRINTS PR00315 GTP-binding elongation factor signature 63 71 7.6E-12 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:3.40.50.300 19 272 1.5E-110 T 31-10-2018 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 526 8.5E-262 T 31-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF00009 Elongation factor Tu GTP binding domain 11 274 2.2E-46 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF52540 8 274 3.83E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 524 51.441 T 31-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:3.40.50.300 12 375 1.5E-110 T 31-10-2018 Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Gene3D G3DSA:3.30.70.3280 387 526 7.4E-52 T 31-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 SUPERFAMILY SSF50447 259 390 5.08E-30 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_1120 8b12186d5ac1500a2fdb3a153e39ab87 527 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 2.6E-45 T 31-10-2018 IPR032090 Peptide chain release factor 3, C-terminal Y89_3016 4266885b84adcedacf7b48884355efbc 367 Gene3D G3DSA:3.40.50.2000 1 190 7.6E-7 T 31-10-2018 Y89_3016 4266885b84adcedacf7b48884355efbc 367 Pfam PF13439 Glycosyltransferase Family 4 17 183 1.2E-9 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_3016 4266885b84adcedacf7b48884355efbc 367 Pfam PF13692 Glycosyl transferases group 1 204 308 3.0E-10 T 31-10-2018 Y89_3016 4266885b84adcedacf7b48884355efbc 367 SUPERFAMILY SSF53756 13 366 1.2E-43 T 31-10-2018 Y89_3016 4266885b84adcedacf7b48884355efbc 367 Gene3D G3DSA:3.40.50.2000 193 348 2.1E-19 T 31-10-2018 Y89_5051 353d80e0623b6a46209538a5aafe1620 541 Pfam PF08479 POTRA domain, ShlB-type 57 130 1.0E-21 T 31-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y89_5051 353d80e0623b6a46209538a5aafe1620 541 Gene3D G3DSA:2.40.160.50 161 540 3.0E-73 T 31-10-2018 Y89_5051 353d80e0623b6a46209538a5aafe1620 541 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 192 485 7.3E-26 T 31-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y89_5051 353d80e0623b6a46209538a5aafe1620 541 Gene3D G3DSA:3.10.20.310 40 130 9.2E-26 T 31-10-2018 Y89_0141 9de7c6b3bf0ac76d40811c1c3ebeed3c 38 Pfam PF01527 Transposase 3 37 1.4E-6 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_4304 8a0a22167c17646ade73e12f24b0da86 452 Pfam PF02447 GntP family permease 1 450 3.3E-96 T 31-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y89_2482 af7cf248c264793a1eff95529b3eab1a 119 Pfam PF02635 DsrE/DsrF-like family 4 118 2.0E-20 T 31-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y89_2482 af7cf248c264793a1eff95529b3eab1a 119 Gene3D G3DSA:3.40.1260.10 3 119 5.4E-35 T 31-10-2018 IPR027396 DsrEFH-like Y89_2482 af7cf248c264793a1eff95529b3eab1a 119 SUPERFAMILY SSF75169 4 118 5.72E-35 T 31-10-2018 IPR027396 DsrEFH-like Y89_2482 af7cf248c264793a1eff95529b3eab1a 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 118 2.1E-40 T 31-10-2018 IPR017462 Sulphur relay, TusC/DsrF Y89_1495 5c8ef765ad5c66bface3ed11e13b9779 383 Gene3D G3DSA:1.20.1250.20 10 193 1.7E-13 T 31-10-2018 Y89_1495 5c8ef765ad5c66bface3ed11e13b9779 383 SUPERFAMILY SSF103473 11 381 2.88E-39 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1495 5c8ef765ad5c66bface3ed11e13b9779 383 Gene3D G3DSA:1.20.1250.20 199 376 3.5E-21 T 31-10-2018 Y89_1495 5c8ef765ad5c66bface3ed11e13b9779 383 Pfam PF07690 Major Facilitator Superfamily 14 318 5.8E-18 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 Gene3D G3DSA:1.10.287.470 89 161 7.9E-68 T 31-10-2018 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 SUPERFAMILY SSF111369 47 274 8.63E-24 T 31-10-2018 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 Gene3D G3DSA:2.40.30.170 41 277 7.9E-68 T 31-10-2018 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 Gene3D G3DSA:2.40.50.100 55 201 7.9E-68 T 31-10-2018 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 264 4.0E-17 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 351 5.1E-74 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0170 f8abe741a0f998172d017d765b62ddd5 356 Gene3D G3DSA:2.40.420.20 34 349 7.9E-68 T 31-10-2018 Y89_3515 1e7654f2fba477385067e6905122e522 253 Gene3D G3DSA:3.40.50.150 23 192 1.7E-11 T 31-10-2018 Y89_3515 1e7654f2fba477385067e6905122e522 253 SUPERFAMILY SSF53335 90 178 1.44E-14 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3515 1e7654f2fba477385067e6905122e522 253 Pfam PF08241 Methyltransferase domain 82 131 1.8E-6 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Gene3D G3DSA:2.40.170.20 247 851 3.2E-90 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Pfam PF07660 Secretin and TonB N terminus short domain 55 104 8.4E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 SMART SM00965 55 105 1.0E-11 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 SUPERFAMILY SSF56935 109 849 3.66E-90 T 31-10-2018 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 130 849 5.6E-129 T 31-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 127 848 1.1E-107 T 31-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Gene3D G3DSA:2.170.130.10 130 246 4.3E-28 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Pfam PF07715 TonB-dependent Receptor Plug Domain 134 235 1.2E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Gene3D G3DSA:3.55.50.30 25 129 2.3E-25 T 31-10-2018 Y89_4048 16c3d9f4d760516d64b1eee6609ed25b 851 Pfam PF00593 TonB dependent receptor 339 848 1.9E-42 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 SUPERFAMILY SSF51735 112 267 5.09E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 31-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 Gene3D G3DSA:3.40.50.720 124 269 8.0E-128 T 31-10-2018 Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 Gene3D G3DSA:3.90.180.10 12 319 8.0E-128 T 31-10-2018 Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 8.8E-9 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 SUPERFAMILY SSF50129 8 142 1.31E-38 T 31-10-2018 IPR011032 GroES-like superfamily Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 SMART SM00829 11 323 1.3E-35 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_0029 96d58dcb922ef5690edf6116c83d4fb5 325 Pfam PF00107 Zinc-binding dehydrogenase 152 278 1.8E-26 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 Pfam PF07650 KH domain 215 290 9.8E-21 T 31-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 Hamap MF_00367 GTPase Era [era]. 12 302 36.249 T 31-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 Pfam PF01926 50S ribosome-binding GTPase 17 131 1.5E-23 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 17 37 2.3E-6 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 66 81 2.3E-6 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 Gene3D G3DSA:3.40.50.300 11 190 2.3E-51 T 31-10-2018 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 SUPERFAMILY SSF52540 17 210 1.26E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 Gene3D G3DSA:3.30.300.20 192 303 1.2E-41 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 SUPERFAMILY SSF54814 188 302 3.92E-42 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 TIGRFAM TIGR00436 era: GTP-binding protein Era 15 285 3.1E-100 T 31-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4587 ec5c945807d397ff8be230a0b025e6fb 305 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 175 1.9E-31 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_4470 73c909924871aaac24fb4ce6acdc0411 229 SUPERFAMILY SSF161098 9 206 5.76E-39 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4470 73c909924871aaac24fb4ce6acdc0411 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 6.8E-20 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4470 73c909924871aaac24fb4ce6acdc0411 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 2.3E-22 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4470 73c909924871aaac24fb4ce6acdc0411 229 Gene3D G3DSA:1.10.3720.10 1 223 3.8E-49 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 339 358 2.0E-36 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 2.0E-36 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 2.0E-36 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 176 200 2.0E-36 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 391 417 2.0E-36 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 497 4.7E-176 T 31-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2440 96ca0f02d4c39f85fd34a4eba74f756e 509 Pfam PF00361 Proton-conducting membrane transporter 134 433 2.9E-72 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_0268 ca88a35976ad8214b27271f2c8781786 718 Gene3D G3DSA:3.40.50.1820 147 370 1.3E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0268 ca88a35976ad8214b27271f2c8781786 718 Pfam PF11678 Protein of unknown function (DUF3274) 386 687 1.1E-102 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 Y89_0268 ca88a35976ad8214b27271f2c8781786 718 SUPERFAMILY SSF53474 181 278 1.6E-11 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 SUPERFAMILY SSF46894 199 260 7.82E-16 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 SMART SM00421 204 261 2.4E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 SUPERFAMILY SSF52172 9 160 3.13E-26 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 Gene3D G3DSA:3.40.50.2300 6 150 6.3E-24 T 31-10-2018 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 Gene3D G3DSA:1.10.10.10 196 269 1.3E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 SMART SM00448 9 124 1.4E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 Pfam PF00196 Bacterial regulatory proteins, luxR family 207 259 3.4E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 Pfam PF00072 Response regulator receiver domain 11 122 4.5E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 221 237 1.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 221 1.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4780 9de420c6c19a86c5dfe7bbc51834263a 275 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 237 249 1.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5903 c0463eb567c9dde88e6d81041e7f44a1 539 SUPERFAMILY SSF161098 280 531 1.96E-34 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5903 c0463eb567c9dde88e6d81041e7f44a1 539 Gene3D G3DSA:1.10.3720.10 280 537 1.5E-30 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5903 c0463eb567c9dde88e6d81041e7f44a1 539 SUPERFAMILY SSF161098 8 252 5.45E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5903 c0463eb567c9dde88e6d81041e7f44a1 539 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 253 8.2E-16 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5903 c0463eb567c9dde88e6d81041e7f44a1 539 Gene3D G3DSA:1.10.3720.10 9 263 1.3E-54 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 PIRSF PIRSF002155 1 227 5.2E-75 T 31-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 31-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 Pfam PF00687 Ribosomal protein L1p/L10e family 34 220 9.1E-49 T 31-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 SUPERFAMILY SSF56808 6 225 6.93E-79 T 31-10-2018 IPR023674 Ribosomal protein L1-like Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 Gene3D G3DSA:3.30.190.20 21 225 2.7E-75 T 31-10-2018 Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.7E-102 T 31-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 Gene3D G3DSA:3.40.50.790 68 159 2.7E-75 T 31-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Y89_0749 0a2ff9556c282ff99118ee66c0bdfec5 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.014 T 31-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 SUPERFAMILY SSF53335 85 277 1.9E-55 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 SMART SM00138 19 280 6.9E-92 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 Gene3D G3DSA:3.40.50.150 84 280 2.1E-63 T 31-10-2018 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PIRSF PIRSF000410 3 280 6.7E-94 T 31-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 Gene3D G3DSA:1.10.155.10 10 83 6.9E-22 T 31-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 Pfam PF03705 CheR methyltransferase, all-alpha domain 20 72 1.3E-15 T 31-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 41 54 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 78 90 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 PRINTS PR00996 Glutamate methyltransferase family signature 114 134 8.6E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 SUPERFAMILY SSF47757 12 84 1.57E-18 T 31-10-2018 Y89_0187 d816126c95ef563ff9b74e8cb14be25f 280 Pfam PF01739 CheR methyltransferase, SAM binding domain 85 276 3.9E-55 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y89_3839 3f1cdebf6be7e0767164a82b52b05603 421 SUPERFAMILY SSF82544 4 418 1.16E-146 T 31-10-2018 Y89_3839 3f1cdebf6be7e0767164a82b52b05603 421 Gene3D G3DSA:3.40.1480.10 253 413 3.5E-133 T 31-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily Y89_3839 3f1cdebf6be7e0767164a82b52b05603 421 Gene3D G3DSA:3.40.50.10180 37 252 3.5E-133 T 31-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 Y89_3839 3f1cdebf6be7e0767164a82b52b05603 421 Pfam PF05161 MOFRL family 307 412 1.9E-35 T 31-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Y89_3839 3f1cdebf6be7e0767164a82b52b05603 421 Pfam PF13660 Domain of unknown function (DUF4147) 9 228 3.9E-79 T 31-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 Y89_1562 a773e670abe051054bee1690f59ce8d3 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 7.7E-85 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_1562 a773e670abe051054bee1690f59ce8d3 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 3 379 80.253 T 31-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y89_1562 a773e670abe051054bee1690f59ce8d3 382 Gene3D G3DSA:3.20.20.30 1 361 6.8E-153 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_1562 a773e670abe051054bee1690f59ce8d3 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 4.6E-192 T 31-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y89_1562 a773e670abe051054bee1690f59ce8d3 382 SUPERFAMILY SSF51679 3 349 1.06E-96 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_4467 bee4633a6800a4b8c341bd954915e949 254 SMART SM00382 28 225 3.2E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4467 bee4633a6800a4b8c341bd954915e949 254 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4467 bee4633a6800a4b8c341bd954915e949 254 SUPERFAMILY SSF52540 4 248 1.89E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4467 bee4633a6800a4b8c341bd954915e949 254 Gene3D G3DSA:3.40.50.300 2 254 8.4E-77 T 31-10-2018 Y89_4467 bee4633a6800a4b8c341bd954915e949 254 Pfam PF00005 ABC transporter 19 178 5.4E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4467 bee4633a6800a4b8c341bd954915e949 254 PIRSF PIRSF039085 1 254 1.5E-116 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_3818 3fd86c64ac22b7b68002004116af678c 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 85 4.3E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3818 3fd86c64ac22b7b68002004116af678c 259 SMART SM00895 95 218 8.8E-21 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3818 3fd86c64ac22b7b68002004116af678c 259 Pfam PF07729 FCD domain 95 217 5.3E-23 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3818 3fd86c64ac22b7b68002004116af678c 259 SUPERFAMILY SSF46785 22 89 1.21E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3818 3fd86c64ac22b7b68002004116af678c 259 SUPERFAMILY SSF48008 91 219 8.11E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_3818 3fd86c64ac22b7b68002004116af678c 259 Gene3D G3DSA:1.20.120.530 89 228 8.2E-25 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_3818 3fd86c64ac22b7b68002004116af678c 259 SMART SM00345 27 85 7.6E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3818 3fd86c64ac22b7b68002004116af678c 259 Gene3D G3DSA:1.10.10.10 9 86 3.8E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 108 1.9E-30 T 31-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 Gene3D G3DSA:3.10.20.30 1 104 2.4E-33 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 SUPERFAMILY SSF46548 105 232 2.27E-38 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 6 227 3.9E-84 T 31-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 SUPERFAMILY SSF54292 2 104 3.3E-26 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 Gene3D G3DSA:1.10.1060.10 105 235 2.9E-56 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_3751 6ae7f5bc8a7f913dc65b62672520ab51 235 Pfam PF13534 4Fe-4S dicluster domain 145 218 4.3E-9 T 31-10-2018 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 Gene3D G3DSA:3.40.30.10 25 184 2.7E-43 T 31-10-2018 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 PRINTS PR01011 Glutathione peroxidase family signature 142 151 2.9E-9 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 PRINTS PR01011 Glutathione peroxidase family signature 47 64 2.9E-9 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 PRINTS PR01011 Glutathione peroxidase family signature 82 98 2.9E-9 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 49 64 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 PIRSF PIRSF000303 1 184 3.8E-56 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 SUPERFAMILY SSF52833 34 180 2.32E-42 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4063 0f1df2cd200684dbc79c94598ad87fe5 184 Pfam PF00255 Glutathione peroxidase 39 134 1.7E-22 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 254 386 4.1E-22 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 126 1.0E-9 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Gene3D G3DSA:1.10.540.10 28 133 1.1E-22 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Gene3D G3DSA:1.20.140.10 235 409 5.5E-53 T 31-10-2018 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 21 411 1.8E-198 T 31-10-2018 IPR023922 Sulphate-starvation-induced SfnB Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 PIRSF PIRSF016578 14 406 9.9E-36 T 31-10-2018 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 145 227 3.8E-9 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 Gene3D G3DSA:2.40.110.10 136 234 1.5E-29 T 31-10-2018 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 SUPERFAMILY SSF56645 33 235 1.7E-47 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2929 9e9b7d7d0399b4d52a2d26191d81962d 411 SUPERFAMILY SSF47203 237 410 9.99E-23 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_1613 65a10c61680cfabb33666718e97219fa 178 SUPERFAMILY SSF160387 66 172 3.66E-32 T 31-10-2018 Y89_1613 65a10c61680cfabb33666718e97219fa 178 Pfam PF05573 NosL 19 163 3.3E-51 T 31-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL Y89_1613 65a10c61680cfabb33666718e97219fa 178 Gene3D G3DSA:3.30.70.2060 66 117 6.3E-7 T 31-10-2018 Y89_1613 65a10c61680cfabb33666718e97219fa 178 Gene3D G3DSA:3.30.70.2050 118 175 3.8E-10 T 31-10-2018 Y89_2315 88c0758d3810f36223ad709087ce9656 690 Pfam PF02195 ParB-like nuclease domain 36 130 2.4E-12 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_2315 88c0758d3810f36223ad709087ce9656 690 Gene3D G3DSA:1.10.10.2830 118 218 7.0E-13 T 31-10-2018 Y89_2315 88c0758d3810f36223ad709087ce9656 690 SUPERFAMILY SSF109709 125 228 2.09E-19 T 31-10-2018 Y89_2315 88c0758d3810f36223ad709087ce9656 690 SUPERFAMILY SSF110849 33 165 8.02E-14 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_2315 88c0758d3810f36223ad709087ce9656 690 SMART SM00470 34 131 2.0E-16 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_2315 88c0758d3810f36223ad709087ce9656 690 Gene3D G3DSA:3.90.1530.30 51 116 1.7E-9 T 31-10-2018 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 Pfam PF02416 mttA/Hcf106 family 4 49 4.3E-8 T 31-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 8.7E-19 T 31-10-2018 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 8.7E-19 T 31-10-2018 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 8.7E-19 T 31-10-2018 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 116 16.967 T 31-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Y89_5741 031afb42dd71c80ae7419acb5ac73615 141 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 76 2.8E-24 T 31-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Y89_3317 3ac4c83e1790ad4ca75652c85588bc7b 450 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_3317 3ac4c83e1790ad4ca75652c85588bc7b 450 SUPERFAMILY SSF103473 10 433 4.97E-79 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3317 3ac4c83e1790ad4ca75652c85588bc7b 450 Pfam PF07690 Major Facilitator Superfamily 29 396 1.8E-50 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3317 3ac4c83e1790ad4ca75652c85588bc7b 450 Gene3D G3DSA:1.20.1250.20 18 430 1.5E-68 T 31-10-2018 Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Pfam PF03445 Putative nucleotidyltransferase DUF294 290 420 7.1E-42 T 31-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Pfam PF00571 CBS domain 156 199 0.0072 T 31-10-2018 IPR000644 CBS domain Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Pfam PF00571 CBS domain 222 263 0.0022 T 31-10-2018 IPR000644 CBS domain Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Gene3D G3DSA:3.10.580.10 151 273 4.5E-13 T 31-10-2018 Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Gene3D G3DSA:2.60.120.10 5 138 4.2E-13 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 SUPERFAMILY SSF54631 153 264 1.09E-14 T 31-10-2018 Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Pfam PF00027 Cyclic nucleotide-binding domain 31 111 4.6E-9 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 SMART SM00100 11 127 2.8E-5 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 SUPERFAMILY SSF51206 9 135 9.95E-20 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_1781 bda39ae24f77e924e6827ef21a6fe5c5 599 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 458 594 7.9E-39 T 31-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding Y89_3069 bceaeb26cfad61b1f898ce3017a174ff 441 Pfam PF07690 Major Facilitator Superfamily 35 397 6.8E-49 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3069 bceaeb26cfad61b1f898ce3017a174ff 441 Gene3D G3DSA:1.20.1250.20 244 439 8.3E-25 T 31-10-2018 Y89_3069 bceaeb26cfad61b1f898ce3017a174ff 441 SUPERFAMILY SSF103473 13 432 4.32E-70 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3069 bceaeb26cfad61b1f898ce3017a174ff 441 Gene3D G3DSA:1.20.1250.20 21 215 3.9E-46 T 31-10-2018 Y89_1564 57e4232105ca1cf6258a1b5c476c3e13 274 SMART SM00382 45 219 5.3E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1564 57e4232105ca1cf6258a1b5c476c3e13 274 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1564 57e4232105ca1cf6258a1b5c476c3e13 274 SUPERFAMILY SSF52540 21 222 1.93E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1564 57e4232105ca1cf6258a1b5c476c3e13 274 Gene3D G3DSA:3.40.50.300 21 248 3.5E-62 T 31-10-2018 Y89_1564 57e4232105ca1cf6258a1b5c476c3e13 274 Pfam PF00005 ABC transporter 36 169 4.7E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 SUPERFAMILY SSF55961 166 465 1.31E-56 T 31-10-2018 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 SUPERFAMILY SSF50022 18 162 4.19E-40 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 Pfam PF00355 Rieske [2Fe-2S] domain 48 132 2.5E-16 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 Gene3D G3DSA:3.90.380.10 31 463 1.6E-131 T 31-10-2018 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 Gene3D G3DSA:2.102.10.10 48 173 1.6E-131 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 190 212 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 33 58 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 84 104 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 105 125 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 149 175 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 63 78 3.2E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 91 114 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_2565 a321de54c5c6d27a3551bb8140c9a53f 465 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 169 410 5.5E-14 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Pfam PF01751 Toprim domain 412 521 1.5E-12 T 31-10-2018 IPR006171 TOPRIM domain Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 SMART SM00387 26 172 8.6E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 SMART SM00433 33 623 3.4E-208 T 31-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 623 0.0 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 ProSitePatterns PS00177 DNA topoisomerase II signature. 415 423 - T 31-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 191 212 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 148 163 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 310 325 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 361 386 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 447 468 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 536 558 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 337 360 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 468 480 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 237 260 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 293 309 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 583 597 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 502 518 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR01098 Topoisomerase IV subunit B signature 173 190 1.3E-116 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 SUPERFAMILY SSF55874 4 214 1.69E-68 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 619 6.2E-24 T 31-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Gene3D G3DSA:3.30.230.10 215 388 1.1E-53 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 413 427 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 265 278 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 561 577 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 496 513 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 30 45 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 108 122 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 516 528 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 65 78 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 PRINTS PR00418 DNA topoisomerase II family signature 478 494 9.6E-59 T 31-10-2018 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 627 46.824 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Gene3D G3DSA:3.40.50.670 389 622 1.3E-85 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Pfam PF00204 DNA gyrase B 217 384 1.4E-38 T 31-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Gene3D G3DSA:3.30.565.10 1 214 2.5E-77 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 SUPERFAMILY SSF56719 387 620 8.63E-76 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 170 4.0E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5637 f8a3c2e65cc39fb679529e20343a771a 629 SUPERFAMILY SSF54211 216 381 6.83E-45 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_1398 541ce12aff20802c81ae862c5a2f63bd 283 SUPERFAMILY SSF53474 5 282 3.06E-94 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1398 541ce12aff20802c81ae862c5a2f63bd 283 Gene3D G3DSA:3.40.50.1820 5 282 1.1E-94 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1398 541ce12aff20802c81ae862c5a2f63bd 283 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 281 2.6E-127 T 31-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 Y89_1398 541ce12aff20802c81ae862c5a2f63bd 283 Pfam PF00756 Putative esterase 25 275 4.8E-63 T 31-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 Y89_2430 10140b77b9d2c9248c2e272bb6bd33b5 104 Pfam PF03413 Peptidase propeptide and YPEB domain 43 101 1.6E-10 T 31-10-2018 IPR025711 PepSY domain Y89_2430 10140b77b9d2c9248c2e272bb6bd33b5 104 Gene3D G3DSA:3.10.450.40 34 104 5.0E-10 T 31-10-2018 Y89_3599 ae7e733a70583be5d24fb8082fa9ce14 273 Gene3D G3DSA:1.10.760.10 153 268 3.6E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3599 ae7e733a70583be5d24fb8082fa9ce14 273 Pfam PF00034 Cytochrome c 181 264 6.2E-10 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3599 ae7e733a70583be5d24fb8082fa9ce14 273 SUPERFAMILY SSF46626 162 269 1.1E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5779 48d9560c22e92146cd41baf711d5f199 85 Pfam PF04355 SmpA / OmlA family 22 47 6.2E-6 T 31-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 Gene3D G3DSA:3.40.50.300 1 79 3.4E-8 T 31-10-2018 Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 Gene3D G3DSA:3.40.50.300 227 372 1.2E-8 T 31-10-2018 Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 SUPERFAMILY SSF52540 1 350 1.08E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 23 54 1.6E-6 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 242 348 2.9E-17 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_4571 2de98edb6c2abd64b7d718cd5b58aa7f 387 PIRSF PIRSF029347 1 387 1.4E-171 T 31-10-2018 IPR014555 RecF-like Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 SUPERFAMILY SSF50715 341 552 4.6E-69 T 31-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:2.40.240.10 349 465 5.8E-87 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:3.40.50.620 29 249 1.6E-103 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 553 54.019 T 31-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 341 532 7.0E-58 T 31-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:3.90.800.10 102 210 1.6E-103 T 31-10-2018 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 30 553 5.2E-229 T 31-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:2.40.240.10 341 550 5.8E-87 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 SUPERFAMILY SSF52374 28 347 8.16E-98 T 31-10-2018 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 321 1.1E-108 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 Gene3D G3DSA:1.10.1160.10 262 340 2.5E-33 T 31-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 57 2.7E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 74 2.7E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 44 2.7E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_3538 6b37727e2fd43fca14b0acfe3a2152bd 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 221 2.7E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 Gene3D G3DSA:1.20.5.570 455 488 1.3E-14 T 31-10-2018 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 2.6E-174 T 31-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 4.3E-171 T 31-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 SUPERFAMILY SSF143968 323 487 2.35E-66 T 31-10-2018 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 SUPERFAMILY SSF50475 3 322 3.92E-126 T 31-10-2018 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.005 T 31-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y89_5925 7ec53ed78a1dce8ffd9bff4e4e3ede01 488 Gene3D G3DSA:3.40.1670.10 337 454 2.0E-52 T 31-10-2018 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 Pfam PF00072 Response regulator receiver domain 4 115 1.1E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 SUPERFAMILY SSF52172 1 128 5.98E-31 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 SMART SM00448 2 114 4.5E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 Gene3D G3DSA:1.10.10.10 139 207 1.5E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 SMART SM00421 145 202 6.3E-20 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 Gene3D G3DSA:3.40.50.2300 2 128 1.5E-31 T 31-10-2018 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 SUPERFAMILY SSF46894 137 208 7.14E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1075 8677c3161a83fe9bcae9e734e4252cbf 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 4.6E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4784 f3778d931b71521c7932581762bbcd87 303 Pfam PF00482 Type II secretion system (T2SS), protein F 159 287 3.1E-15 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_5984 21042d612e15e663019a2eff0015b4de 329 Gene3D G3DSA:3.40.50.720 129 273 4.0E-91 T 31-10-2018 Y89_5984 21042d612e15e663019a2eff0015b4de 329 SMART SM00829 11 327 7.8E-34 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_5984 21042d612e15e663019a2eff0015b4de 329 Gene3D G3DSA:3.90.180.10 11 327 4.0E-91 T 31-10-2018 Y89_5984 21042d612e15e663019a2eff0015b4de 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 89 6.5E-9 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_5984 21042d612e15e663019a2eff0015b4de 329 SUPERFAMILY SSF50129 3 151 4.4E-35 T 31-10-2018 IPR011032 GroES-like superfamily Y89_5984 21042d612e15e663019a2eff0015b4de 329 SUPERFAMILY SSF51735 117 279 1.79E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5984 21042d612e15e663019a2eff0015b4de 329 Pfam PF00107 Zinc-binding dehydrogenase 158 282 3.0E-23 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 13 95 5.9E-30 T 31-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 Pfam PF00120 Glutamine synthetase, catalytic domain 102 466 9.5E-139 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 SUPERFAMILY SSF54368 7 100 1.96E-33 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 SUPERFAMILY SSF55931 102 468 1.96E-136 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 Gene3D G3DSA:3.30.590.10 105 456 3.9E-146 T 31-10-2018 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 31-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 Gene3D G3DSA:3.10.20.70 4 104 6.1E-37 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 3.9E-204 T 31-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 SMART SM01230 102 379 7.5E-147 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5790 ae42b588c2bd3f01596a2cc992f2531e 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 31-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_1084 24098f556570d89eb96780f73a63ab73 306 SUPERFAMILY SSF56645 13 197 1.83E-14 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1084 24098f556570d89eb96780f73a63ab73 306 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 93 3.2E-4 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_1084 24098f556570d89eb96780f73a63ab73 306 Gene3D G3DSA:1.10.540.10 6 98 3.9E-12 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 Gene3D G3DSA:3.40.30.10 1 160 6.3E-59 T 31-10-2018 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 PIRSF PIRSF000303 1 160 1.9E-60 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 Pfam PF00255 Glutathione peroxidase 4 110 3.9E-38 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 121 130 2.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 2.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 2.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y89_4522 331d11dac7fddef80b58f05229102e4f 160 SUPERFAMILY SSF52833 4 159 7.97E-57 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4151 192172f69608d0f6b6c8dcf076e3919a 205 SUPERFAMILY SSF52499 4 200 4.06E-53 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_4151 192172f69608d0f6b6c8dcf076e3919a 205 Gene3D G3DSA:3.40.50.850 1 205 5.5E-59 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_4151 192172f69608d0f6b6c8dcf076e3919a 205 Pfam PF00857 Isochorismatase family 14 164 5.1E-22 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_0489 b4f94cabe6dd994d2fce2e6393e42301 316 Gene3D G3DSA:2.130.10.10 144 315 2.0E-22 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_0489 b4f94cabe6dd994d2fce2e6393e42301 316 SUPERFAMILY SSF101898 31 274 9.94E-32 T 31-10-2018 Y89_0489 b4f94cabe6dd994d2fce2e6393e42301 316 PIRSF PIRSF026412 1 316 6.8E-123 T 31-10-2018 IPR011217 Streptogramin lyase GO:0000287|GO:0016835|GO:0017001|GO:0046677 Y89_0489 b4f94cabe6dd994d2fce2e6393e42301 316 Gene3D G3DSA:2.130.10.10 16 141 1.1E-18 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 SMART SM00342 228 314 3.6E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 SUPERFAMILY SSF46689 215 262 6.45E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 265 310 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 Pfam PF12833 Helix-turn-helix domain 234 316 2.1E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 SUPERFAMILY SSF51215 75 177 1.44E-6 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 Pfam PF14525 AraC-binding-like domain 25 192 6.3E-26 T 31-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y89_2673 f4144e10be78808fc8eb80150a48c48f 318 Gene3D G3DSA:1.10.10.60 213 318 6.0E-31 T 31-10-2018 Y89_5810 9c8b9575cbb7925b7c3f906d50873e52 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 250 3.4E-18 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5810 9c8b9575cbb7925b7c3f906d50873e52 250 SUPERFAMILY SSF53850 30 250 7.29E-35 T 31-10-2018 Y89_5810 9c8b9575cbb7925b7c3f906d50873e52 250 Gene3D G3DSA:3.40.190.10 119 210 1.1E-24 T 31-10-2018 Y89_5810 9c8b9575cbb7925b7c3f906d50873e52 250 Gene3D G3DSA:3.40.190.10 34 248 1.1E-24 T 31-10-2018 Y89_4898 f889acbf6b86213a0f3d0ea2afcd3efd 287 Gene3D G3DSA:3.10.20.310 76 145 3.8E-20 T 31-10-2018 Y89_4898 f889acbf6b86213a0f3d0ea2afcd3efd 287 Gene3D G3DSA:3.40.50.11690 146 276 3.7E-42 T 31-10-2018 Y89_4898 f889acbf6b86213a0f3d0ea2afcd3efd 287 Pfam PF08478 POTRA domain, FtsQ-type 77 145 8.2E-18 T 31-10-2018 IPR013685 POTRA domain, FtsQ-type Y89_4898 f889acbf6b86213a0f3d0ea2afcd3efd 287 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 46 270 25.096 T 31-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 Y89_4898 f889acbf6b86213a0f3d0ea2afcd3efd 287 Pfam PF03799 Cell division protein FtsQ 149 262 8.0E-23 T 31-10-2018 IPR005548 Cell division protein FtsQ/DivIB Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 Gene3D G3DSA:3.40.50.150 64 253 5.5E-47 T 31-10-2018 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 Pfam PF01739 CheR methyltransferase, SAM binding domain 66 240 3.4E-36 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 SUPERFAMILY SSF48452 330 415 1.82E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 SMART SM00138 3 259 1.3E-37 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 PRINTS PR00996 Glutamate methyltransferase family signature 130 146 2.3E-23 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 PRINTS PR00996 Glutamate methyltransferase family signature 58 70 2.3E-23 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 PRINTS PR00996 Glutamate methyltransferase family signature 218 241 2.3E-23 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 PRINTS PR00996 Glutamate methyltransferase family signature 97 117 2.3E-23 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 PRINTS PR00996 Glutamate methyltransferase family signature 199 213 2.3E-23 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 SUPERFAMILY SSF53335 65 253 1.17E-42 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1320 1f2c93c5b88da3a8cc12201d1026e816 422 Gene3D G3DSA:1.25.40.10 314 418 1.4E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1723 98665c0af046f3b8fe234718243b8861 156 Pfam PF00857 Isochorismatase family 62 151 6.7E-10 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_1723 98665c0af046f3b8fe234718243b8861 156 Gene3D G3DSA:3.40.50.850 1 156 4.9E-16 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1723 98665c0af046f3b8fe234718243b8861 156 SUPERFAMILY SSF52499 1 154 6.8E-21 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 Gene3D G3DSA:1.10.10.10 1 82 2.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 Gene3D G3DSA:3.40.190.10 92 290 7.0E-46 T 31-10-2018 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.6E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.6E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.6E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 SUPERFAMILY SSF46785 2 112 1.2E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.7E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 Gene3D G3DSA:3.40.190.10 163 268 7.0E-46 T 31-10-2018 Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 Pfam PF03466 LysR substrate binding domain 89 295 7.2E-46 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0513 aa16922a6e3b7bbbcf217f6e0371a4de 305 SUPERFAMILY SSF53850 90 295 7.06E-41 T 31-10-2018 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 174 192 1.7E-27 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 265 292 1.7E-27 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 128 146 1.7E-27 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00149 Fumarate lyase superfamily signature 311 327 1.7E-27 T 31-10-2018 IPR000362 Fumarate lyase family Y89_4960 f7f9519411539de56ac61298c59fa69b 458 SUPERFAMILY SSF48557 3 454 9.42E-132 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.10.40.30 402 453 2.0E-21 T 31-10-2018 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Pfam PF10415 Fumarase C C-terminus 402 454 5.7E-20 T 31-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 456 78.574 T 31-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 127 149 3.4E-5 T 31-10-2018 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 169 189 3.4E-5 T 31-10-2018 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 327 3.4E-5 T 31-10-2018 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.10.275.10 5 132 2.1E-47 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_4960 f7f9519411539de56ac61298c59fa69b 458 ProSitePatterns PS00163 Fumarate lyases signature. 311 320 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Pfam PF00206 Lyase 12 336 4.2E-86 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_4960 f7f9519411539de56ac61298c59fa69b 458 Gene3D G3DSA:1.20.200.10 133 400 7.8E-96 T 31-10-2018 Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 7.2E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 Gene3D G3DSA:1.10.10.10 1 88 2.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 SUPERFAMILY SSF46785 3 109 5.05E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 SUPERFAMILY SSF53850 86 281 1.11E-36 T 31-10-2018 Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 Gene3D G3DSA:3.40.190.290 89 283 1.1E-30 T 31-10-2018 Y89_4725 c5ee4c21a0a72d64b1c3c95522b48bf6 284 Pfam PF03466 LysR substrate binding domain 85 281 1.3E-42 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1422 97f2eabbbc87fc447916a662505090eb 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 3.8E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 Pfam PF00072 Response regulator receiver domain 6 120 8.0E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 SMART SM00421 150 207 1.1E-23 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 4.5E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 4.5E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 4.5E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 Gene3D G3DSA:3.40.50.12740 5 212 1.2E-51 T 31-10-2018 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 SMART SM00448 4 119 2.2E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1422 97f2eabbbc87fc447916a662505090eb 217 SUPERFAMILY SSF52172 3 180 5.69E-26 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 371 207.87 T 31-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 Gene3D G3DSA:3.90.1150.10 11 354 9.0E-112 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 9 362 6.8E-168 T 31-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 5 364 2.6E-184 T 31-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 PIRSF PIRSF000524 1 370 5.2E-62 T 31-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 Gene3D G3DSA:3.40.640.10 19 263 9.0E-112 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 Pfam PF00266 Aminotransferase class-V 37 304 1.3E-19 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_4040 30030b6fac1cbb03c58f9cda83016c5c 371 SUPERFAMILY SSF53383 8 367 6.53E-84 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Gene3D G3DSA:3.40.50.300 167 359 5.1E-62 T 31-10-2018 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 220 332 2.7E-10 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 311 323 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Gene3D G3DSA:3.40.50.300 565 778 1.1E-63 T 31-10-2018 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 SMART SM00382 612 754 5.1E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2829 c393821169b4d06dbb9544b6463304e2 849 SMART SM00382 215 360 1.0E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Gene3D G3DSA:3.40.50.300 361 559 1.0E-48 T 31-10-2018 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Gene3D G3DSA:1.10.1780.10 1 156 7.0E-39 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 781 848 1.7E-5 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_2829 c393821169b4d06dbb9544b6463304e2 849 SUPERFAMILY SSF81923 10 131 5.23E-19 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 8.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 661 679 8.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 690 708 8.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 723 737 8.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 4.2E-36 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 10 849 0.0 T 31-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y89_2829 c393821169b4d06dbb9544b6463304e2 849 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 21 71 2.2E-10 T 31-10-2018 IPR004176 Clp, N-terminal Y89_2829 c393821169b4d06dbb9544b6463304e2 849 SUPERFAMILY SSF52540 561 838 1.01E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2829 c393821169b4d06dbb9544b6463304e2 849 SUPERFAMILY SSF52540 176 535 4.91E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 SUPERFAMILY SSF53633 8 298 1.19E-98 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 Gene3D G3DSA:3.40.1160.10 2 301 1.1E-105 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 2.9E-78 T 31-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 Pfam PF00696 Amino acid kinase family 28 274 7.7E-44 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 PIRSF PIRSF000728 13 297 2.5E-111 T 31-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 Hamap MF_00082 Acetylglutamate kinase [argB]. 27 290 52.208 T 31-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 2.7E-8 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 2.7E-8 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_6061 0565399fdd6a16dabdfefb209db00a2c 301 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 2.7E-8 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 428 2.2E-54 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 297 330 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Gene3D G3DSA:3.30.950.10 333 465 9.5E-51 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 217 452 3.5E-96 T 31-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Gene3D G3DSA:3.40.50.720 1 112 2.0E-32 T 31-10-2018 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Pfam PF14824 Sirohaem biosynthesis protein central 119 144 2.2E-7 T 31-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Pfam PF10414 Sirohaem synthase dimerisation region 151 207 5.1E-22 T 31-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Gene3D G3DSA:3.40.1010.10 215 332 1.2E-47 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 54.726 T 31-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 6.6E-89 T 31-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Gene3D G3DSA:3.30.160.110 113 148 9.3E-19 T 31-10-2018 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 SUPERFAMILY SSF75615 114 210 2.62E-28 T 31-10-2018 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Pfam PF13241 Putative NAD(P)-binding 6 115 5.2E-28 T 31-10-2018 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 SUPERFAMILY SSF51735 1 113 1.07E-27 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 Gene3D G3DSA:1.10.8.210 149 210 5.2E-9 T 31-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 PIRSF PIRSF036426 1 465 4.2E-210 T 31-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2477 d3f535e7ca76afc5f91d82976ef84e33 465 SUPERFAMILY SSF53790 214 459 3.27E-84 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 Gene3D G3DSA:3.40.190.290 95 292 9.7E-11 T 31-10-2018 Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 SUPERFAMILY SSF53850 91 297 1.59E-25 T 31-10-2018 Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.0E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 Pfam PF03466 LysR substrate binding domain 90 293 5.1E-26 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 Gene3D G3DSA:1.10.10.10 3 87 3.4E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0500 09b9f5934212464fb7e586b0ba29b03a 316 SUPERFAMILY SSF46785 5 88 3.0E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0311 591ee3aba32d0d994c122ff495812d6e 292 Gene3D G3DSA:3.60.110.10 1 290 4.2E-110 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_0311 591ee3aba32d0d994c122ff495812d6e 292 SUPERFAMILY SSF56317 3 283 8.76E-84 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_0311 591ee3aba32d0d994c122ff495812d6e 292 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 5 282 1.8E-147 T 31-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 Y89_0311 591ee3aba32d0d994c122ff495812d6e 292 Pfam PF00795 Carbon-nitrogen hydrolase 6 266 4.5E-53 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 Pfam PF00593 TonB dependent receptor 247 728 7.6E-62 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 Gene3D G3DSA:2.40.170.20 183 732 4.5E-129 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 SUPERFAMILY SSF56935 35 732 9.68E-132 T 31-10-2018 Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 Gene3D G3DSA:2.170.130.10 53 182 6.2E-40 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 732 1.5E-110 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 715 732 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_4028 042e92ff3bfe2ce09746f8f4f28067b7 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 169 9.7E-19 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3621 fb518457d3b184bef043e397efb96d6a 137 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 21 113 1.2E-11 T 31-10-2018 IPR039366 YscW/ExsB Y89_3621 fb518457d3b184bef043e397efb96d6a 137 Gene3D G3DSA:2.60.40.2990 13 137 3.5E-57 T 31-10-2018 Y89_3621 fb518457d3b184bef043e397efb96d6a 137 TIGRFAM TIGR02567 YscW: type III secretion system chaperone YscW 2 125 1.2E-52 T 31-10-2018 IPR013400 Type III secretion system chaperone, YscW Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 4 478 3.1E-159 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 SUPERFAMILY SSF52935 327 479 5.76E-36 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 Pfam PF02887 Pyruvate kinase, alpha/beta domain 361 476 1.9E-26 T 31-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 Gene3D G3DSA:2.40.33.10 72 170 3.6E-159 T 31-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 Gene3D G3DSA:3.20.20.60 4 339 3.6E-159 T 31-10-2018 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 SUPERFAMILY SSF50800 72 165 4.36E-25 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 SUPERFAMILY SSF51621 2 343 6.98E-92 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 298 316 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 273 297 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 221 247 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 248 272 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 61 77 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 317 333 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 PRINTS PR01050 Pyruvate kinase family signature 188 202 3.8E-49 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 Gene3D G3DSA:3.40.1380.20 340 474 3.6E-159 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 ProSitePatterns PS00110 Pyruvate kinase active site signature. 216 228 - T 31-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_4814 919a9cf9a3785767ba82579f139f7c48 483 Pfam PF00224 Pyruvate kinase, barrel domain 4 342 2.0E-122 T 31-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Pfam PF13086 AAA domain 952 1042 8.3E-7 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 SUPERFAMILY SSF56112 158 360 1.26E-30 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 SMART SM00220 129 355 7.7E-9 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Gene3D G3DSA:1.10.510.10 115 395 3.3E-28 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Pfam PF13195 Protein of unknown function (DUF4011) 741 831 3.8E-9 T 31-10-2018 IPR025103 Protein of unknown function DUF4011 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Gene3D G3DSA:3.40.50.300 1439 1701 3.8E-10 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Gene3D G3DSA:3.40.50.300 902 1120 2.3E-18 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Pfam PF13087 AAA domain 1722 1916 4.5E-22 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Pfam PF00069 Protein kinase domain 160 351 2.3E-18 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 Gene3D G3DSA:3.40.50.300 1732 1928 3.1E-30 T 31-10-2018 Y89_2358 f32f2d805925123e92f909b9a6978e21 2098 SUPERFAMILY SSF52540 952 1952 1.06E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 370 6.0E-130 T 31-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 SMART SM00359 281 364 3.2E-16 T 31-10-2018 IPR002478 PUA domain GO:0003723 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 Pfam PF01472 PUA domain 281 354 9.8E-23 T 31-10-2018 IPR002478 PUA domain GO:0003723 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 Gene3D G3DSA:2.30.130.10 270 372 3.5E-33 T 31-10-2018 IPR036974 PUA domain superfamily GO:0003723 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 SUPERFAMILY SSF53633 9 261 6.41E-69 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PIRSF PIRSF000729 4 372 1.1E-129 T 31-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 5.2E-52 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 5.2E-52 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 5.2E-52 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 5.2E-52 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 5.2E-52 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 SUPERFAMILY SSF88697 280 371 1.6E-24 T 31-10-2018 IPR015947 PUA-like superfamily Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 263 37.347 T 31-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 31-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 Gene3D G3DSA:3.40.1160.10 1 269 4.2E-90 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5172 1409803a3405e07fa3f066efc2ae5149 372 Pfam PF00696 Amino acid kinase family 10 238 5.5E-47 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_1006 9c215baddf377790e4cc84e52cf902f1 97 Pfam PF07119 Protein of unknown function (DUF1375) 10 83 4.2E-24 T 31-10-2018 IPR010780 Protein of unknown function DUF1375 Y89_5785 91aa46a7f56c8751f2fbef844cd2bb4b 1201 Pfam PF10101 Predicted membrane protein (DUF2339) 786 1188 1.7E-44 T 31-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane Y89_5785 91aa46a7f56c8751f2fbef844cd2bb4b 1201 Pfam PF10101 Predicted membrane protein (DUF2339) 178 533 2.8E-105 T 31-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 219 8.2E-65 T 31-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 221 33.609 T 31-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 Gene3D G3DSA:3.30.70.260 129 200 6.8E-82 T 31-10-2018 Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 53 217 1.0E-57 T 31-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 SUPERFAMILY SSF100950 1 150 2.7E-42 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 Gene3D G3DSA:3.40.50.1360 7 217 6.8E-82 T 31-10-2018 Y89_0350 6b6ff7c984edea64a1ee43e09081cef4 223 SUPERFAMILY SSF75445 131 202 7.98E-24 T 31-10-2018 Y89_5319 a10a2ccd33de1b405cbcfc333623cf85 327 Pfam PF01032 FecCD transport family 2 324 1.7E-89 T 31-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Y89_5319 a10a2ccd33de1b405cbcfc333623cf85 327 SUPERFAMILY SSF81345 2 324 7.06E-81 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_5319 a10a2ccd33de1b405cbcfc333623cf85 327 Gene3D G3DSA:1.10.3470.10 1 327 1.5E-104 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_6121 c4f1196b34de60fc12b9278059010877 355 Pfam PF03601 Conserved hypothetical protein 698 21 335 1.0E-115 T 31-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 Y89_6121 c4f1196b34de60fc12b9278059010877 355 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 19 350 2.1E-115 T 31-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 SMART SM00388 233 299 9.6E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 SMART SM00304 179 232 2.2E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 SMART SM00387 342 453 2.1E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 447 1.8E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 1 449 2.4E-178 T 31-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 SUPERFAMILY SSF55874 288 445 6.02E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 1.3E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 1.3E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 1.3E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 Gene3D G3DSA:1.10.287.130 183 300 2.1E-24 T 31-10-2018 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 Gene3D G3DSA:3.30.565.10 304 454 9.1E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 299 2.2E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3901 cbb1ad78bfca716e58166ced22b81da3 471 SUPERFAMILY SSF47384 216 300 1.96E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 2.0E-27 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Gene3D G3DSA:2.40.110.10 120 231 7.7E-45 T 31-10-2018 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 9.4E-48 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 SUPERFAMILY SSF56645 1 240 2.88E-81 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 SUPERFAMILY SSF47203 226 379 6.6E-58 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Gene3D G3DSA:1.20.140.10 232 381 5.9E-53 T 31-10-2018 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 4.9E-30 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 PIRSF PIRSF016578 3 381 7.3E-22 T 31-10-2018 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 Gene3D G3DSA:1.10.540.10 1 118 1.2E-37 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4613 16076fbbdf2dbc141f434050c291c154 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 PIRSF PIRSF000105 2 300 5.4E-82 T 31-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 SUPERFAMILY SSF48179 189 291 2.38E-32 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 Gene3D G3DSA:1.10.1040.10 193 299 1.4E-33 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 SUPERFAMILY SSF51735 6 189 4.98E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2589 2a1a4899ac83fc133db00d3299069861 301 Gene3D G3DSA:3.40.50.720 2 192 3.7E-61 T 31-10-2018 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 187 4.6E-58 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2589 2a1a4899ac83fc133db00d3299069861 301 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 192 285 3.3E-28 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_4667 847b4a831ae3a8935ca5e956056a628f 119 Pfam PF11190 Protein of unknown function (DUF2976) 32 118 1.3E-32 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_4667 847b4a831ae3a8935ca5e956056a628f 119 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 16 119 1.3E-44 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_0086 fdfa4acfd0c6928b633e2e38f831e5c4 226 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 5 139 1.3E-47 T 31-10-2018 IPR017748 T6S-associated protein TagF Y89_0086 fdfa4acfd0c6928b633e2e38f831e5c4 226 Gene3D G3DSA:3.40.1730.10 1 226 4.9E-94 T 31-10-2018 IPR038225 T6S-associated protein TagF superfamily Y89_0086 fdfa4acfd0c6928b633e2e38f831e5c4 226 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 5 139 5.9E-49 T 31-10-2018 IPR017748 T6S-associated protein TagF Y89_0086 fdfa4acfd0c6928b633e2e38f831e5c4 226 PIRSF PIRSF029287 1 219 1.3E-98 T 31-10-2018 IPR017748 T6S-associated protein TagF Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 2.7E-5 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 2.7E-5 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 Pfam PF00455 DeoR C terminal sensor domain 79 233 5.0E-44 T 31-10-2018 IPR014036 DeoR C-terminal sensor domain Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 SUPERFAMILY SSF100950 77 234 2.51E-31 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 SMART SM00420 10 62 9.0E-14 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 SMART SM01134 73 234 7.0E-60 T 31-10-2018 Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 Gene3D G3DSA:1.10.10.10 2 56 1.6E-6 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 Pfam PF08220 DeoR-like helix-turn-helix domain 10 61 9.6E-15 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 SUPERFAMILY SSF46785 8 65 2.02E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6290 265ffd9b205d47193023bec0aab0f50f 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 10 44 - T 31-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 666 836 6.28E-10 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1430 40 802 4.4E-298 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1320 135 326 4.4E-298 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 40 133 6.02E-24 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.2090.10 706 794 4.4E-298 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:1.20.1640.10 504 1010 4.4E-298 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82714 183 266 3.27E-14 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82866 290 490 2.22E-48 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.0E-78 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.2090.10 179 269 4.4E-298 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 556 653 3.4E-16 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82714 708 791 3.14E-18 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82693 136 324 1.07E-24 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Pfam PF00873 AcrB/AcrD/AcrF family 6 1013 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 SUPERFAMILY SSF82866 816 1015 3.79E-44 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1440 654 852 4.4E-298 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:1.20.1640.10 10 503 4.4E-298 T 31-10-2018 Y89_2664 e21399d570b5bde3f4a55ed53515ffc6 1043 Gene3D G3DSA:3.30.70.1430 558 653 4.4E-298 T 31-10-2018 Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.300 485 744 2.8E-24 T 31-10-2018 Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.10810 65 162 3.9E-10 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.10810 291 444 3.5E-7 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 Pfam PF04851 Type III restriction enzyme, res subunit 61 136 7.5E-7 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 SMART SM00487 57 410 2.9E-8 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 Pfam PF00271 Helicase conserved C-terminal domain 573 685 2.4E-4 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 SUPERFAMILY SSF52540 342 725 1.79E-27 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6377 5e0e91d2b67db8f2479af3e17c93f0d3 749 SUPERFAMILY SSF52540 56 394 4.79E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.300 485 744 2.8E-24 T 31-10-2018 Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.10810 65 162 3.9E-10 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 Gene3D G3DSA:3.40.50.10810 291 444 3.5E-7 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 Pfam PF04851 Type III restriction enzyme, res subunit 61 136 7.5E-7 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 SMART SM00487 57 410 2.9E-8 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 Pfam PF00271 Helicase conserved C-terminal domain 573 685 2.4E-4 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 SUPERFAMILY SSF52540 342 725 1.79E-27 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5107 5e0e91d2b67db8f2479af3e17c93f0d3 749 SUPERFAMILY SSF52540 56 394 4.79E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 Pfam PF03466 LysR substrate binding domain 93 296 7.4E-32 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:3.40.190.10 171 267 6.6E-61 T 31-10-2018 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:1.10.10.10 1 89 4.5E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 Gene3D G3DSA:3.40.190.10 92 291 6.6E-61 T 31-10-2018 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.9E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 SUPERFAMILY SSF53850 90 295 7.6E-50 T 31-10-2018 Y89_2639 d853f3452c1fbca8f6a7548a145eaddd 310 SUPERFAMILY SSF46785 2 82 4.03E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 SUPERFAMILY SSF48295 410 512 6.28E-37 T 31-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 512 1.8E-187 T 31-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 SMART SM00382 211 420 2.3E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF11638 DnaA N-terminal domain 4 63 6.4E-21 T 31-10-2018 IPR024633 DnaA N-terminal domain Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 SUPERFAMILY SSF52540 180 390 2.21E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 SMART SM00760 422 491 9.1E-44 T 31-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF00308 Bacterial dnaA protein 179 396 9.5E-100 T 31-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 ProSitePatterns PS01008 DnaA protein signature. 472 491 - T 31-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 513 34.157 T 31-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 423 491 9.3E-32 T 31-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:1.10.1750.10 421 514 1.7E-37 T 31-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:3.30.300.180 2 104 7.2E-29 T 31-10-2018 IPR038454 DnaA, N-terminal domain superfamily Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 258 1.8E-52 T 31-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 232 1.8E-52 T 31-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 290 1.8E-52 T 31-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 472 491 1.8E-52 T 31-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 310 337 1.8E-52 T 31-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:1.10.8.60 345 415 1.1E-23 T 31-10-2018 Y89_0001 87a53b7e3ab3c9efc5c08392ae3c894f 514 Gene3D G3DSA:3.40.50.300 162 343 5.0E-49 T 31-10-2018 Y89_3265 685f348ecffe6fbfbebbfe8bcfa24c1b 388 SUPERFAMILY SSF52540 135 348 6.52E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3265 685f348ecffe6fbfbebbfe8bcfa24c1b 388 Gene3D G3DSA:3.40.50.300 131 297 2.0E-7 T 31-10-2018 Y89_3265 685f348ecffe6fbfbebbfe8bcfa24c1b 388 Pfam PF13401 AAA domain 147 283 3.1E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1423 b7176690f0941b834b72189f317e8eb0 123 Gene3D G3DSA:1.10.3830.10 7 123 1.2E-36 T 31-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y89_1423 b7176690f0941b834b72189f317e8eb0 123 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 74 85 - T 31-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y89_1423 b7176690f0941b834b72189f317e8eb0 123 Pfam PF01219 Prokaryotic diacylglycerol kinase 20 121 2.6E-32 T 31-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 31-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 SUPERFAMILY SSF47781 18 90 1.04E-8 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 SUPERFAMILY SSF102712 121 197 1.83E-5 T 31-10-2018 Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 Gene3D G3DSA:3.40.140.10 100 224 2.4E-41 T 31-10-2018 Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 Pfam PF04002 RadC-like JAB domain 104 222 4.2E-43 T 31-10-2018 IPR025657 RadC-like JAB domain Y89_6057 24581ec7a8d0038bb40341c79ac17967 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 7.4E-74 T 31-10-2018 IPR001405 Uncharacterised protein family UPF0758 Y89_2202 488ae7ada4275fe691eca6a98c9ce5c6 106 Pfam PF11747 Killing trait 11 77 3.1E-27 T 31-10-2018 IPR021070 Killing trait, RebB Y89_5573 2eb80002916ce1b8321cc8b9110cc13d 444 SUPERFAMILY SSF103473 4 435 1.44E-74 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5573 2eb80002916ce1b8321cc8b9110cc13d 444 ProSitePatterns PS00216 Sugar transport proteins signature 1. 75 90 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5573 2eb80002916ce1b8321cc8b9110cc13d 444 ProSitePatterns PS00217 Sugar transport proteins signature 2. 117 142 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5573 2eb80002916ce1b8321cc8b9110cc13d 444 Pfam PF07690 Major Facilitator Superfamily 33 315 1.7E-35 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5573 2eb80002916ce1b8321cc8b9110cc13d 444 Gene3D G3DSA:1.20.1250.20 16 429 5.2E-63 T 31-10-2018 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 SUPERFAMILY SSF48179 180 331 1.55E-49 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 322 35.44 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 Gene3D G3DSA:3.40.50.720 1 187 9.3E-60 T 31-10-2018 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 160 2.6E-51 T 31-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PIRSF PIRSF000114 1 332 1.6E-107 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 SUPERFAMILY SSF51735 7 178 2.12E-49 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 1.2E-38 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 320 5.9E-47 T 31-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 188 209 - T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Y89_3721 851c2c239906aafea80fc66d20dd21be 340 Gene3D G3DSA:1.10.1040.10 189 334 7.6E-48 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 91 1.5E-7 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 Gene3D G3DSA:3.90.180.10 22 336 2.1E-106 T 31-10-2018 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 SMART SM00829 13 336 4.4E-11 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 152 173 - T 31-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 SUPERFAMILY SSF51735 119 289 8.23E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 Gene3D G3DSA:3.40.50.720 130 275 2.1E-106 T 31-10-2018 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 SUPERFAMILY SSF50129 9 147 3.8E-35 T 31-10-2018 IPR011032 GroES-like superfamily Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 339 2.6E-171 T 31-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 Y89_6007 a132adbdb76005e84ea7c1b3afac0db1 339 Pfam PF13602 Zinc-binding dehydrogenase 196 336 3.8E-21 T 31-10-2018 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 Gene3D G3DSA:2.60.300.12 11 116 1.7E-34 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 SUPERFAMILY SSF89360 5 102 1.22E-31 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 13 115 8.0E-38 T 31-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 111 3.1E-19 T 31-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 31-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Y89_0738 89a293d9c9240aa1227f6e9246fb2872 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 36.764 T 31-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 SUPERFAMILY SSF46785 10 115 2.96E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 Gene3D G3DSA:3.40.190.10 169 271 9.4E-51 T 31-10-2018 Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 Gene3D G3DSA:1.10.10.10 5 89 1.1E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 Pfam PF03466 LysR substrate binding domain 92 301 1.6E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 2.9E-13 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 Gene3D G3DSA:3.40.190.10 94 298 9.4E-51 T 31-10-2018 Y89_2173 79190f356e87edf5ff7a5b69163e1723 318 SUPERFAMILY SSF53850 93 302 5.61E-36 T 31-10-2018 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 163 175 2.2E-9 T 31-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 150 162 2.2E-9 T 31-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 2.2E-9 T 31-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 Pfam PF00355 Rieske [2Fe-2S] domain 114 178 2.4E-10 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 Gene3D G3DSA:2.102.10.10 43 191 2.4E-48 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 2 40 5.4E-12 T 31-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 SUPERFAMILY SSF50022 30 190 1.52E-44 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_4920 2a5a290983f41318407d5891d4572cfc 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 191 2.5E-73 T 31-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Y89_1498 4753120b7a07a97bcafd8db12c3c6536 200 SUPERFAMILY SSF52833 3 194 1.25E-66 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1498 4753120b7a07a97bcafd8db12c3c6536 200 Gene3D G3DSA:3.40.30.10 1 197 8.7E-74 T 31-10-2018 Y89_1498 4753120b7a07a97bcafd8db12c3c6536 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 193 2.9E-14 T 31-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_1498 4753120b7a07a97bcafd8db12c3c6536 200 Pfam PF00578 AhpC/TSA family 5 139 4.0E-33 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_1498 4753120b7a07a97bcafd8db12c3c6536 200 PIRSF PIRSF000239 1 199 3.0E-59 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_6133 2a3f12c524d6363472282d902c22bfee 156 SUPERFAMILY SSF54427 4 156 2.12E-80 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_6133 2a3f12c524d6363472282d902c22bfee 156 Pfam PF07080 Protein of unknown function (DUF1348) 9 138 1.3E-67 T 31-10-2018 IPR009783 Protein of unknown function DUF1348 Y89_6133 2a3f12c524d6363472282d902c22bfee 156 Gene3D G3DSA:3.10.450.50 12 156 8.5E-77 T 31-10-2018 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 Gene3D G3DSA:3.90.79.10 1 135 5.0E-43 T 31-10-2018 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 PRINTS PR00502 NUDIX hydrolase family signature 32 46 7.5E-7 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 PRINTS PR00502 NUDIX hydrolase family signature 46 61 7.5E-7 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 SUPERFAMILY SSF55811 4 128 8.39E-31 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_2263 f83ba39f51bc5feaa6d5c5ad4f650dad 136 Pfam PF00293 NUDIX domain 5 120 3.8E-21 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 Gene3D G3DSA:1.10.40.50 275 339 1.8E-21 T 31-10-2018 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 Gene3D G3DSA:3.40.50.300 102 273 2.0E-51 T 31-10-2018 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 45 338 36.188 T 31-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 SUPERFAMILY SSF52540 113 334 3.09E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 Gene3D G3DSA:2.40.50.140 40 99 2.2E-22 T 31-10-2018 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 Pfam PF03193 RsgA GTPase 100 273 8.5E-53 T 31-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 SUPERFAMILY SSF50249 45 103 6.17E-5 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5622 86c9695ab4e5ad9f0406b6ebe6065f97 339 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 78 330 1.3E-75 T 31-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 120 275 7.1E-20 T 31-10-2018 IPR000160 GGDEF domain Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 SMART SM00052 292 538 7.1E-110 T 31-10-2018 IPR001633 EAL domain Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 Gene3D G3DSA:3.30.70.270 118 294 1.1E-41 T 31-10-2018 Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 SMART SM00267 113 282 9.8E-39 T 31-10-2018 IPR000160 GGDEF domain Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 Pfam PF00990 Diguanylate cyclase, GGDEF domain 124 274 5.1E-32 T 31-10-2018 IPR000160 GGDEF domain Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 Gene3D G3DSA:3.20.20.450 295 544 4.4E-98 T 31-10-2018 IPR035919 EAL domain superfamily Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 Pfam PF00563 EAL domain 298 533 2.4E-73 T 31-10-2018 IPR001633 EAL domain Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 SUPERFAMILY SSF141868 298 543 1.18E-87 T 31-10-2018 IPR035919 EAL domain superfamily Y89_6033 2b5f3ac96193cb62ec75c46efc310d57 558 SUPERFAMILY SSF55073 129 284 1.65E-36 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 SUPERFAMILY SSF53659 1 324 6.17E-98 T 31-10-2018 Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 Gene3D G3DSA:3.40.718.10 1 324 5.9E-116 T 31-10-2018 Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 Pfam PF02504 Fatty acid synthesis protein 1 315 7.5E-93 T 31-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 323 8.9E-97 T 31-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 326 140.607 T 31-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y89_2051 39cc81e8e60bdcd790f016f114b22e89 326 PIRSF PIRSF002465 1 325 1.2E-117 T 31-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Y89_0936 a338b9397cd6efddca103086158226b4 461 Gene3D G3DSA:3.40.640.10 93 351 1.3E-114 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0936 a338b9397cd6efddca103086158226b4 461 SUPERFAMILY SSF53383 45 455 1.21E-77 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0936 a338b9397cd6efddca103086158226b4 461 Gene3D G3DSA:3.90.1150.10 27 440 1.3E-114 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0936 a338b9397cd6efddca103086158226b4 461 Pfam PF00202 Aminotransferase class-III 53 435 3.5E-41 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_1348 857800701ddeb1e142a67ac626581305 212 Gene3D G3DSA:1.10.10.60 12 67 3.2E-20 T 31-10-2018 Y89_1348 857800701ddeb1e142a67ac626581305 212 SUPERFAMILY SSF46689 12 92 1.5E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1348 857800701ddeb1e142a67ac626581305 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 1.4E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1348 857800701ddeb1e142a67ac626581305 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.6E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1348 857800701ddeb1e142a67ac626581305 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.6E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1348 857800701ddeb1e142a67ac626581305 212 Gene3D G3DSA:1.10.357.10 76 211 2.0E-35 T 31-10-2018 Y89_1348 857800701ddeb1e142a67ac626581305 212 SUPERFAMILY SSF48498 91 202 8.16E-11 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_1348 857800701ddeb1e142a67ac626581305 212 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 207 3.3E-12 T 31-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 31-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 SMART SM00882 8 219 8.0E-92 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 SUPERFAMILY SSF100950 5 226 7.85E-89 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 Pfam PF01144 Coenzyme A transferase 11 218 5.9E-78 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 Gene3D G3DSA:3.40.1080.10 2 228 2.3E-97 T 31-10-2018 Y89_3324 1d2a035d6cd13d55e87f564b6696fe88 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 218 1.0E-76 T 31-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 Pfam PF00171 Aldehyde dehydrogenase family 32 491 3.7E-174 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 SUPERFAMILY SSF53720 13 493 1.83E-170 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 Gene3D G3DSA:3.40.309.10 271 460 2.2E-188 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 Gene3D G3DSA:3.40.605.10 31 489 2.2E-188 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0951 a82b86e3ea520e1d325c160410be5e3f 495 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_1149 17dd19809e082cd70ea3709b5daa1fd4 431 Gene3D G3DSA:1.20.1250.20 2 186 2.6E-48 T 31-10-2018 Y89_1149 17dd19809e082cd70ea3709b5daa1fd4 431 Gene3D G3DSA:1.20.1250.20 196 416 5.5E-52 T 31-10-2018 Y89_1149 17dd19809e082cd70ea3709b5daa1fd4 431 SUPERFAMILY SSF103473 5 412 4.19E-65 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1149 17dd19809e082cd70ea3709b5daa1fd4 431 Pfam PF07690 Major Facilitator Superfamily 17 368 9.4E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 639 45.677 T 31-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Gene3D G3DSA:2.70.20.10 190 457 5.3E-106 T 31-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 SUPERFAMILY SSF56712 1 598 1.1E-137 T 31-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Gene3D G3DSA:3.40.50.140 1 140 8.5E-37 T 31-10-2018 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 SMART SM00493 1 111 5.9E-13 T 31-10-2018 IPR006171 TOPRIM domain Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 364 380 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 474 488 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 168 186 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 85 98 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Pfam PF01751 Toprim domain 3 119 2.2E-19 T 31-10-2018 IPR006171 TOPRIM domain Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 SMART SM00436 110 198 3.7E-20 T 31-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Gene3D G3DSA:1.10.460.10 142 552 5.3E-106 T 31-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 SMART SM00437 251 511 2.7E-68 T 31-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Gene3D G3DSA:1.10.290.10 259 378 5.3E-106 T 31-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 Pfam PF01131 DNA topoisomerase 138 547 4.1E-93 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 622 3.9E-138 T 31-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y89_5079 ee8fb5e7879c869c6a2d9f2113c1bac9 639 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 288 302 - T 31-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y89_1070 37b93541ce5bf7add333a58ee8ed5b43 193 SUPERFAMILY SSF52499 10 191 1.7E-51 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1070 37b93541ce5bf7add333a58ee8ed5b43 193 Pfam PF00857 Isochorismatase family 14 185 5.7E-35 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_1070 37b93541ce5bf7add333a58ee8ed5b43 193 Gene3D G3DSA:3.40.50.850 5 192 1.3E-57 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1160 17d96a92eeb3e46fae65674c384cb9dd 210 Pfam PF08348 YheO-like PAS domain 9 114 2.9E-27 T 31-10-2018 IPR013559 YheO-like Y89_1160 17d96a92eeb3e46fae65674c384cb9dd 210 Pfam PF13309 HTH domain 142 203 1.9E-16 T 31-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain Y89_1160 17d96a92eeb3e46fae65674c384cb9dd 210 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 9 110 3.0E-54 T 31-10-2018 IPR013559 YheO-like Y89_2226 4b919760995c30ed243fa33bb46be96e 247 SUPERFAMILY SSF56784 11 236 2.35E-28 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 Gene3D G3DSA:3.40.50.720 1 256 1.6E-85 T 31-10-2018 Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.7E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.7E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 255 4.3E-54 T 31-10-2018 Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1622 eff25e44257e7d9571b2348aa6b8fcc2 256 SUPERFAMILY SSF51735 4 256 7.23E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SUPERFAMILY SSF55874 303 471 4.85E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SUPERFAMILY SSF52172 497 657 6.22E-32 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SUPERFAMILY SSF55785 99 225 3.49E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SMART SM00387 360 475 2.1E-37 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Gene3D G3DSA:1.10.287.130 237 313 6.9E-21 T 31-10-2018 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 1.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 1.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 1.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 1.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SMART SM00073 636 736 4.1E-4 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SMART SM00388 247 313 3.6E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SMART SM00448 498 614 8.4E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SUPERFAMILY SSF47384 230 314 1.12E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 473 2.7E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Pfam PF00072 Response regulator receiver domain 500 614 6.1E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 313 5.6E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Pfam PF01627 Hpt domain 647 730 1.9E-12 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Pfam PF08448 PAS fold 119 229 6.6E-9 T 31-10-2018 IPR013656 PAS fold-4 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Gene3D G3DSA:3.40.50.2300 483 617 4.1E-31 T 31-10-2018 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Gene3D G3DSA:3.30.565.10 314 476 2.3E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Gene3D G3DSA:3.30.450.20 125 236 7.4E-13 T 31-10-2018 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 Gene3D G3DSA:1.20.120.160 628 740 4.1E-17 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1975 97a9f98eafe8ef94d070ab0e470aaa06 741 SUPERFAMILY SSF47226 625 736 6.92E-19 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 SUPERFAMILY SSF52540 199 588 4.86E-98 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 69 167 1.9E-15 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 Gene3D G3DSA:3.30.450.90 186 313 6.0E-42 T 31-10-2018 Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 Pfam PF00437 Type II/IV secretion system protein 220 480 2.8E-76 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 SUPERFAMILY SSF160246 16 160 9.15E-12 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 SMART SM00382 341 464 1.3E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 408 422 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_5897 370b962e6003c2de75ba61b0c19a555b 594 Gene3D G3DSA:3.40.50.300 317 594 2.1E-103 T 31-10-2018 Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 SUPERFAMILY SSF52540 16 267 7.33E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 SMART SM00382 44 242 2.3E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 PIRSF PIRSF037116 7 271 2.9E-144 T 31-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 Pfam PF00005 ABC transporter 36 192 2.5E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 18 269 2.2E-117 T 31-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK Y89_1633 4410b03a1b0c58ebe74983d7e8e7e0fe 271 Gene3D G3DSA:3.40.50.300 18 271 3.3E-67 T 31-10-2018 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 SUPERFAMILY SSF143800 1 81 6.28E-22 T 31-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.7E-15 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 45 60 6.7E-15 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 PRINTS PR01249 Ribosomal protein L31 signature 60 78 6.7E-15 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.5E-15 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 Gene3D G3DSA:2.30.170.50 1 83 1.4E-21 T 31-10-2018 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 27.111 T 31-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1425 b01a8fdd049f36c87ad00075923c2d5c 87 Pfam PF01197 Ribosomal protein L31 1 79 5.7E-25 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_2100 1ff473ffba05651418d92b7a67091077 389 SUPERFAMILY SSF55031 186 293 3.53E-29 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_2100 1ff473ffba05651418d92b7a67091077 389 SUPERFAMILY SSF53187 6 388 4.4E-90 T 31-10-2018 Y89_2100 1ff473ffba05651418d92b7a67091077 389 PIRSF PIRSF005962 3 389 6.5E-126 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 Y89_2100 1ff473ffba05651418d92b7a67091077 389 Pfam PF07687 Peptidase dimerisation domain 187 280 2.5E-8 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_2100 1ff473ffba05651418d92b7a67091077 389 Gene3D G3DSA:3.40.630.10 17 373 1.8E-135 T 31-10-2018 Y89_2100 1ff473ffba05651418d92b7a67091077 389 Gene3D G3DSA:3.30.70.360 183 297 1.8E-135 T 31-10-2018 Y89_2100 1ff473ffba05651418d92b7a67091077 389 Pfam PF01546 Peptidase family M20/M25/M40 75 385 6.7E-35 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_2100 1ff473ffba05651418d92b7a67091077 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 376 9.7E-108 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 Y89_5680 806938d5a64d72c7530c73628df9e804 244 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 154 166 - T 31-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Y89_5680 806938d5a64d72c7530c73628df9e804 244 SUPERFAMILY SSF56112 35 181 1.64E-18 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5680 806938d5a64d72c7530c73628df9e804 244 Gene3D G3DSA:1.10.510.10 36 177 8.2E-7 T 31-10-2018 Y89_5680 806938d5a64d72c7530c73628df9e804 244 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 42 211 1.4E-17 T 31-10-2018 Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 Gene3D G3DSA:2.170.130.10 145 272 2.7E-48 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 SMART SM00965 75 126 3.3E-5 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 134 891 5.6E-249 T 31-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 Gene3D G3DSA:2.40.170.20 273 891 4.4E-146 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 Pfam PF00593 TonB dependent receptor 378 889 6.1E-50 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 128 891 5.8E-201 T 31-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 Pfam PF07715 TonB-dependent Receptor Plug Domain 150 257 5.6E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 Gene3D G3DSA:3.55.50.30 43 143 8.4E-23 T 31-10-2018 Y89_1600 87a71e577fd509e408b66ce8f4110cf0 891 SUPERFAMILY SSF56935 138 891 2.75E-89 T 31-10-2018 Y89_0437 85daa44effdcf00b543a89248fe74de9 343 SUPERFAMILY SSF52738 149 332 1.2E-45 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_0437 85daa44effdcf00b543a89248fe74de9 343 Gene3D G3DSA:3.40.50.180 145 332 7.1E-45 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_0437 85daa44effdcf00b543a89248fe74de9 343 Pfam PF01339 CheB methylesterase 153 328 1.4E-39 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_0437 85daa44effdcf00b543a89248fe74de9 343 PIRSF PIRSF000876 4 337 4.5E-65 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_0437 85daa44effdcf00b543a89248fe74de9 343 SUPERFAMILY SSF52172 4 61 3.56E-5 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2582 73ce2d8c904485b6e5868e0c6afac147 191 SUPERFAMILY SSF54427 11 191 1.88E-43 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2582 73ce2d8c904485b6e5868e0c6afac147 191 Pfam PF00866 Ring hydroxylating beta subunit 39 182 1.2E-39 T 31-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 Y89_2582 73ce2d8c904485b6e5868e0c6afac147 191 Gene3D G3DSA:3.10.450.50 8 191 9.5E-56 T 31-10-2018 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.30.470.20 87 433 7.9E-156 T 31-10-2018 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.40.50.20 1 85 1.2E-36 T 31-10-2018 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF52440 1 113 1.87E-46 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 SMART SM01209 114 292 0.007 T 31-10-2018 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 SMART SM00878 336 441 1.6E-63 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 1.6E-228 T 31-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF56059 83 346 3.01E-69 T 31-10-2018 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.3E-38 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 SUPERFAMILY SSF51246 331 444 3.92E-42 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Gene3D G3DSA:3.30.1490.20 131 203 7.9E-156 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.3E-87 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_5518 ede04ff4cf4dcbe747c14149e941e370 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-44 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_4742 ac4c5263ff547347a91fe072315ede4c 544 Gene3D G3DSA:3.10.20.310 37 122 5.9E-13 T 31-10-2018 Y89_4742 ac4c5263ff547347a91fe072315ede4c 544 Pfam PF08479 POTRA domain, ShlB-type 48 121 5.8E-18 T 31-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y89_4742 ac4c5263ff547347a91fe072315ede4c 544 Gene3D G3DSA:2.40.160.50 155 544 6.8E-69 T 31-10-2018 Y89_4742 ac4c5263ff547347a91fe072315ede4c 544 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 184 506 1.6E-21 T 31-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 481 2.8E-279 T 31-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 Gene3D G3DSA:3.40.309.10 250 450 2.2E-142 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 SUPERFAMILY SSF53720 3 483 2.09E-145 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 Pfam PF00171 Aldehyde dehydrogenase family 18 477 1.2E-136 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_1456 ab33f6b8e41196b5c02fbc8a9be7f9cc 497 Gene3D G3DSA:3.40.605.10 25 458 2.2E-142 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 SUPERFAMILY SSF54523 34 140 1.62E-26 T 31-10-2018 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 3.1E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 141 1.1E-57 T 31-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.5E-11 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 1.5E-11 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 Pfam PF08334 Type II secretion system (T2SS), protein G 31 139 3.4E-33 T 31-10-2018 IPR013545 Type II secretion system protein G Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 Gene3D G3DSA:3.30.700.10 31 140 4.8E-29 T 31-10-2018 Y89_2412 9c22b1c61f6ee760b81ec34d88301139 144 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 2.7E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 3.2E-16 T 31-10-2018 Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 SMART SM00344 1 107 1.7E-32 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 SUPERFAMILY SSF46785 1 60 3.38E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 Gene3D G3DSA:1.10.10.10 2 51 2.9E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 Pfam PF01037 Lrp/AsnC ligand binding domain 68 134 3.7E-12 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 SUPERFAMILY SSF54909 63 136 8.04E-14 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_5397 7ced6e8c1996517e633dd182cd8b56a5 155 Gene3D G3DSA:3.30.70.920 52 136 1.2E-20 T 31-10-2018 Y89_2055 4883180ec932cd69996ef994017c587d 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 1.1E-60 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y89_2055 4883180ec932cd69996ef994017c587d 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 2.1E-41 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y89_2055 4883180ec932cd69996ef994017c587d 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site Y89_2055 4883180ec932cd69996ef994017c587d 414 SUPERFAMILY SSF53901 4 252 5.32E-78 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2055 4883180ec932cd69996ef994017c587d 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 410 4.5E-198 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y89_2055 4883180ec932cd69996ef994017c587d 414 SMART SM00825 Beta-ketoacyl synthase 6 414 3.2E-16 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y89_2055 4883180ec932cd69996ef994017c587d 414 PIRSF PIRSF000447 1 414 6.5E-192 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Y89_2055 4883180ec932cd69996ef994017c587d 414 Gene3D G3DSA:3.40.47.10 1 255 7.7E-90 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2055 4883180ec932cd69996ef994017c587d 414 SUPERFAMILY SSF53901 215 412 1.5E-75 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2055 4883180ec932cd69996ef994017c587d 414 Gene3D G3DSA:3.40.47.10 261 414 2.4E-58 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3210 385008098bdd83473dcf814444cad6b5 614 SUPERFAMILY SSF49503 460 608 9.32E-36 T 31-10-2018 IPR008972 Cupredoxin Y89_3210 385008098bdd83473dcf814444cad6b5 614 Pfam PF07732 Multicopper oxidase 52 162 2.0E-40 T 31-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Y89_3210 385008098bdd83473dcf814444cad6b5 614 Gene3D G3DSA:2.60.40.420 486 613 2.8E-30 T 31-10-2018 IPR008972 Cupredoxin Y89_3210 385008098bdd83473dcf814444cad6b5 614 ProSitePatterns PS00079 Multicopper oxidases signature 1. 586 606 - T 31-10-2018 IPR033138 Multicopper oxidases, conserved site Y89_3210 385008098bdd83473dcf814444cad6b5 614 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 31 4.1E-5 T 31-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y89_3210 385008098bdd83473dcf814444cad6b5 614 SUPERFAMILY SSF49503 46 184 4.6E-39 T 31-10-2018 IPR008972 Cupredoxin Y89_3210 385008098bdd83473dcf814444cad6b5 614 Pfam PF07731 Multicopper oxidase 498 611 3.1E-25 T 31-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Y89_3210 385008098bdd83473dcf814444cad6b5 614 Gene3D G3DSA:2.60.40.420 166 370 5.7E-42 T 31-10-2018 IPR008972 Cupredoxin Y89_3210 385008098bdd83473dcf814444cad6b5 614 Pfam PF00394 Multicopper oxidase 171 346 5.6E-32 T 31-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 Y89_3210 385008098bdd83473dcf814444cad6b5 614 SUPERFAMILY SSF49503 165 380 1.16E-56 T 31-10-2018 IPR008972 Cupredoxin Y89_3210 385008098bdd83473dcf814444cad6b5 614 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 3 608 2.0E-298 T 31-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 Y89_3210 385008098bdd83473dcf814444cad6b5 614 ProSitePatterns PS00080 Multicopper oxidases signature 2. 591 602 - T 31-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Y89_3210 385008098bdd83473dcf814444cad6b5 614 Gene3D G3DSA:2.60.40.420 42 160 4.8E-38 T 31-10-2018 IPR008972 Cupredoxin Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Pfam PF03471 Transporter associated domain 495 569 1.8E-9 T 31-10-2018 IPR005170 Transporter-associated domain Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Pfam PF02080 TrkA-C domain 418 483 2.3E-11 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Gene3D G3DSA:1.20.1530.20 7 390 3.0E-20 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 SUPERFAMILY SSF56176 497 569 2.02E-7 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Gene3D G3DSA:3.30.465.10 498 570 1.3E-5 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 SUPERFAMILY SSF116726 411 483 3.53E-11 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 574 51.516 T 31-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Gene3D G3DSA:3.30.70.1450 409 484 1.3E-11 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 Pfam PF00999 Sodium/hydrogen exchanger family 15 386 1.2E-56 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_5693 a9b2f12ce281c776ac32a486b60056af 580 SMART SM01091 492 571 5.8E-11 T 31-10-2018 IPR005170 Transporter-associated domain Y89_3604 ebe2826659a37eac8a0228a9f14d4988 232 SUPERFAMILY SSF52317 3 193 2.85E-46 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3604 ebe2826659a37eac8a0228a9f14d4988 232 Gene3D G3DSA:3.40.50.880 1 232 8.9E-66 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3604 ebe2826659a37eac8a0228a9f14d4988 232 Pfam PF00117 Glutamine amidotransferase class-I 22 178 5.8E-17 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_3088 d2dbdd4845b6bcf2a567dad0d92bd195 378 SUPERFAMILY SSF81298 26 378 1.12E-138 T 31-10-2018 IPR035099 Anthrax toxin, edema factor, C-terminal KEGG: 00230+4.6.1.1 Y89_3088 d2dbdd4845b6bcf2a567dad0d92bd195 378 Pfam PF03497 Anthrax toxin LF subunit 40 203 1.5E-67 T 31-10-2018 IPR005165 Anthrax toxin, edema factor, central GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 Y89_3088 d2dbdd4845b6bcf2a567dad0d92bd195 378 Gene3D G3DSA:3.90.1760.10 67 211 6.2E-43 T 31-10-2018 IPR037017 Anthrax toxin, edema factor, central domain superfamily GO:0005576|GO:0008294|GO:0009405 KEGG: 00230+4.6.1.1 Y89_3601 b7a8c7f0eea29799bf0c6ea43daffd87 266 SUPERFAMILY SSF54001 51 258 1.08E-47 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_3601 b7a8c7f0eea29799bf0c6ea43daffd87 266 SMART SM00460 153 215 8.0E-16 T 31-10-2018 IPR002931 Transglutaminase-like Y89_3601 b7a8c7f0eea29799bf0c6ea43daffd87 266 Gene3D G3DSA:3.10.620.30 71 244 5.2E-46 T 31-10-2018 Y89_3601 b7a8c7f0eea29799bf0c6ea43daffd87 266 Pfam PF01841 Transglutaminase-like superfamily 111 212 1.2E-21 T 31-10-2018 IPR002931 Transglutaminase-like Y89_3601 b7a8c7f0eea29799bf0c6ea43daffd87 266 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 7.5E-20 T 31-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Y89_4328 f61f95a40b3f860f35de4637d96c4e06 497 Gene3D G3DSA:3.40.605.10 22 474 7.7E-137 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_4328 f61f95a40b3f860f35de4637d96c4e06 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_4328 f61f95a40b3f860f35de4637d96c4e06 497 Gene3D G3DSA:3.40.309.10 256 449 7.7E-137 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_4328 f61f95a40b3f860f35de4637d96c4e06 497 SUPERFAMILY SSF53720 18 484 2.23E-130 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4328 f61f95a40b3f860f35de4637d96c4e06 497 Pfam PF00171 Aldehyde dehydrogenase family 19 479 4.6E-127 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3944 0430004676f20246f360cacdc627a0f3 651 Gene3D G3DSA:3.40.50.300 110 270 2.6E-18 T 31-10-2018 Y89_3944 0430004676f20246f360cacdc627a0f3 651 SUPERFAMILY SSF52540 113 634 1.61E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3944 0430004676f20246f360cacdc627a0f3 651 Gene3D G3DSA:3.40.50.300 465 647 2.3E-13 T 31-10-2018 Y89_3944 0430004676f20246f360cacdc627a0f3 651 Pfam PF00580 UvrD/REP helicase N-terminal domain 117 450 1.7E-25 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y89_3944 0430004676f20246f360cacdc627a0f3 651 Gene3D G3DSA:3.40.50.300 331 461 3.3E-18 T 31-10-2018 Y89_0877 78380a9e82475794e6f19d05e1cff507 296 SUPERFAMILY SSF46785 3 103 4.15E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0877 78380a9e82475794e6f19d05e1cff507 296 Gene3D G3DSA:1.10.10.10 3 89 3.1E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0877 78380a9e82475794e6f19d05e1cff507 296 SUPERFAMILY SSF53850 92 294 4.89E-34 T 31-10-2018 Y89_0877 78380a9e82475794e6f19d05e1cff507 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 5.7E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0877 78380a9e82475794e6f19d05e1cff507 296 Gene3D G3DSA:3.40.190.290 94 290 1.5E-45 T 31-10-2018 Y89_0877 78380a9e82475794e6f19d05e1cff507 296 Pfam PF03466 LysR substrate binding domain 92 292 5.8E-35 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 5.9E-41 T 31-10-2018 Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 Gene3D G3DSA:1.20.1440.100 15 88 6.5E-72 T 31-10-2018 Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 5.1E-36 T 31-10-2018 Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 4.4E-51 T 31-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 Gene3D G3DSA:3.40.50.1000 3 214 6.5E-72 T 31-10-2018 IPR023214 HAD superfamily Y89_4209 92dccb3025d4f480ea352fc44f6b79d2 217 SUPERFAMILY SSF56784 2 205 9.55E-30 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 Gene3D G3DSA:3.30.950.10 113 233 8.8E-41 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 6 277 2.0E-90 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 5 226 36.409 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 Gene3D G3DSA:3.40.1010.10 1 112 5.1E-42 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 PIRSF PIRSF005917 1 281 7.4E-101 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 SUPERFAMILY SSF53790 4 224 9.16E-80 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 83 94 - T 31-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 Y89_4911 60303237d8a2e302dc479a39d63b58d9 282 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 205 1.5E-28 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Gene3D G3DSA:3.30.450.20 6 118 1.7E-9 T 31-10-2018 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Pfam PF02954 Bacterial regulatory protein, Fis family 426 463 2.9E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 SUPERFAMILY SSF46689 369 468 1.9E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 SUPERFAMILY SSF52540 158 397 4.37E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 SMART SM00382 178 323 9.4E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 1.4E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 1.4E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Pfam PF08448 PAS fold 26 116 4.6E-7 T 31-10-2018 IPR013656 PAS fold-4 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Gene3D G3DSA:1.10.10.60 419 471 3.6E-14 T 31-10-2018 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Gene3D G3DSA:1.10.8.60 330 403 9.9E-17 T 31-10-2018 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Pfam PF00158 Sigma-54 interaction domain 159 326 2.6E-63 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 369 378 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 SUPERFAMILY SSF55785 11 116 2.44E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 182 195 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 245 260 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 SMART SM00091 19 86 0.0065 T 31-10-2018 IPR000014 PAS domain Y89_3318 f47113e41c4fd804e3b3b0326d9cd05f 481 Gene3D G3DSA:3.40.50.300 143 329 9.5E-64 T 31-10-2018 Y89_2861 349365adafa0c5898da86a342bf856d2 207 Pfam PF11363 Protein of unknown function (DUF3164) 12 205 1.4E-81 T 31-10-2018 IPR021505 Bacteriophage B3, Orf6 Y89_1752 b5ff0fd159a49744877b8336b8f5c622 248 Gene3D G3DSA:3.40.190.10 108 203 3.0E-19 T 31-10-2018 Y89_1752 b5ff0fd159a49744877b8336b8f5c622 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 239 4.0E-15 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1752 b5ff0fd159a49744877b8336b8f5c622 248 SUPERFAMILY SSF53850 19 240 3.8E-30 T 31-10-2018 Y89_1752 b5ff0fd159a49744877b8336b8f5c622 248 Gene3D G3DSA:3.40.190.10 43 238 3.0E-19 T 31-10-2018 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 SMART SM00382 31 213 2.2E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1489 573a632998da21258f0e4c8af79fc30a 360 Gene3D G3DSA:2.40.50.940 226 346 2.3E-7 T 31-10-2018 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 SUPERFAMILY SSF52540 7 242 6.69E-75 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1489 573a632998da21258f0e4c8af79fc30a 360 Gene3D G3DSA:3.40.50.300 3 225 2.0E-61 T 31-10-2018 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 Gene3D G3DSA:2.40.50.140 283 337 2.3E-7 T 31-10-2018 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 Pfam PF08402 TOBE domain 276 345 1.8E-10 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1489 573a632998da21258f0e4c8af79fc30a 360 SUPERFAMILY SSF50331 250 345 7.82E-12 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_1489 573a632998da21258f0e4c8af79fc30a 360 Pfam PF00005 ABC transporter 23 164 3.9E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 Pfam PF07690 Major Facilitator Superfamily 20 410 2.3E-48 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 417 4.4E-78 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 Gene3D G3DSA:1.20.1720.10 16 223 5.0E-49 T 31-10-2018 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 1.5E-5 T 31-10-2018 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 1.5E-5 T 31-10-2018 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.5E-5 T 31-10-2018 Y89_0479 c05998734a8d4c819971c5fae68fab74 477 SUPERFAMILY SSF103473 4 467 2.22E-62 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0479 c05998734a8d4c819971c5fae68fab74 477 Gene3D G3DSA:1.20.1250.20 264 460 4.1E-15 T 31-10-2018 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 312 1.1E-60 T 31-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 4.4E-34 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 4.4E-34 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 4.4E-34 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 4.4E-34 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 4.4E-34 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 PIRSF PIRSF000149 1 334 5.0E-135 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 Gene3D G3DSA:3.30.360.10 153 314 4.8E-143 T 31-10-2018 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 31-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 9.2E-127 T 31-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 105 6.0E-38 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 Gene3D G3DSA:3.40.50.720 4 324 4.8E-143 T 31-10-2018 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 SMART SM00846 3 154 3.3E-94 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 SUPERFAMILY SSF55347 154 313 1.19E-66 T 31-10-2018 Y89_1821 14bac58cdff514ae9d6463a5724eb9fa 334 SUPERFAMILY SSF51735 1 182 1.5E-62 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3881 b6ef464c6645d2314651130f239d1934 753 Pfam PF01627 Hpt domain 8 100 8.3E-18 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Gene3D G3DSA:1.10.287.560 367 427 5.4E-19 T 31-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 368 427 5.2E-14 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SUPERFAMILY SSF47384 368 428 5.89E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Gene3D G3DSA:1.20.120.160 2 140 2.3E-39 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SUPERFAMILY SSF50341 614 746 5.36E-32 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SMART SM00387 472 615 1.0E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3881 b6ef464c6645d2314651130f239d1934 753 SUPERFAMILY SSF47226 6 128 3.14E-33 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SMART SM01231 367 427 9.7E-19 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Pfam PF01584 CheW-like domain 621 748 2.2E-24 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_3881 b6ef464c6645d2314651130f239d1934 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 4.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3881 b6ef464c6645d2314651130f239d1934 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 575 593 4.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3881 b6ef464c6645d2314651130f239d1934 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 599 612 4.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3881 b6ef464c6645d2314651130f239d1934 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 531 4.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SMART SM00073 6 103 3.0E-19 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Gene3D G3DSA:2.30.30.40 615 742 2.0E-37 T 31-10-2018 Y89_3881 b6ef464c6645d2314651130f239d1934 753 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 614 3.4E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3881 b6ef464c6645d2314651130f239d1934 753 Gene3D G3DSA:2.40.50.180 638 701 2.0E-37 T 31-10-2018 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SMART SM00260 607 746 8.6E-43 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_3881 b6ef464c6645d2314651130f239d1934 753 SUPERFAMILY SSF55874 430 613 7.47E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3881 b6ef464c6645d2314651130f239d1934 753 Gene3D G3DSA:3.30.565.10 428 614 1.7E-55 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5751 0600544a46d945bedbf6bc71fa562d17 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 33.925 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y89_5751 0600544a46d945bedbf6bc71fa562d17 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 3.0E-52 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y89_5751 0600544a46d945bedbf6bc71fa562d17 145 Gene3D G3DSA:3.50.80.10 1 145 4.2E-53 T 31-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Y89_5751 0600544a46d945bedbf6bc71fa562d17 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 7.8E-52 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Y89_5751 0600544a46d945bedbf6bc71fa562d17 145 SUPERFAMILY SSF69500 1 144 2.75E-54 T 31-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Y89_4093 ea51db2b033c99b3794e61319516422e 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 112 1.6E-26 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4093 ea51db2b033c99b3794e61319516422e 221 SUPERFAMILY SSF161098 17 204 2.35E-37 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4093 ea51db2b033c99b3794e61319516422e 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 211 1.5E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4093 ea51db2b033c99b3794e61319516422e 221 Gene3D G3DSA:1.10.3720.10 4 219 3.1E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5814 e4cdcf0619649f97c20d4f4dd01b4e92 86 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 11 84 2.8E-27 T 31-10-2018 IPR018680 Protein of unknown function DUF2164 Y89_2445 e01916b27c466b8a9d40dbe88b481452 331 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 212 225 - T 31-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2445 e01916b27c466b8a9d40dbe88b481452 331 Pfam PF00146 NADH dehydrogenase 17 322 7.0E-115 T 31-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2445 e01916b27c466b8a9d40dbe88b481452 331 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 329 23.413 T 31-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_5039 2e61a131381258f9a2636caad9665ed5 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 225 240 1.5E-26 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y89_5039 2e61a131381258f9a2636caad9665ed5 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 202 212 1.5E-26 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y89_5039 2e61a131381258f9a2636caad9665ed5 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 145 162 1.5E-26 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y89_5039 2e61a131381258f9a2636caad9665ed5 290 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 213 224 1.5E-26 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Y89_5039 2e61a131381258f9a2636caad9665ed5 290 Pfam PF01478 Type IV leader peptidase family 137 245 1.8E-24 T 31-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Y89_5039 2e61a131381258f9a2636caad9665ed5 290 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 20 126 1.9E-33 T 31-10-2018 IPR010627 Peptidase A24A, N-terminal Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 608 624 1.9E-5 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 412 1.9E-5 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 SUPERFAMILY SSF51395 4 370 5.64E-98 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 SUPERFAMILY SSF51905 380 683 5.83E-33 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.40.50.720 392 679 3.6E-65 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 343 1.1E-62 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 392 643 1.7E-10 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.50.50.60 487 616 3.6E-65 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 Gene3D G3DSA:3.20.20.70 1 380 9.2E-107 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 392 414 3.9E-7 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 609 623 3.9E-7 T 31-10-2018 Y89_6136 5dadc8624938596b6aab60cf4f740a37 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 660 667 3.9E-7 T 31-10-2018 Y89_0272 8e4d2879de4c113d8f4b31af42470f81 591 Gene3D G3DSA:3.40.50.300 201 416 2.3E-15 T 31-10-2018 Y89_0272 8e4d2879de4c113d8f4b31af42470f81 591 Pfam PF04851 Type III restriction enzyme, res subunit 13 184 3.7E-21 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Y89_0272 8e4d2879de4c113d8f4b31af42470f81 591 SUPERFAMILY SSF52540 39 380 1.94E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0272 8e4d2879de4c113d8f4b31af42470f81 591 SMART SM00487 11 208 0.0013 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_0272 8e4d2879de4c113d8f4b31af42470f81 591 Gene3D G3DSA:3.40.50.300 4 200 5.2E-19 T 31-10-2018 Y89_0903 684fc83e131d938f3e853843a9a66494 268 Gene3D G3DSA:3.90.1200.10 98 268 5.1E-61 T 31-10-2018 Y89_0903 684fc83e131d938f3e853843a9a66494 268 Pfam PF01636 Phosphotransferase enzyme family 29 259 4.7E-35 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_0903 684fc83e131d938f3e853843a9a66494 268 PIRSF PIRSF000706 3 268 4.0E-98 T 31-10-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 Y89_0903 684fc83e131d938f3e853843a9a66494 268 SUPERFAMILY SSF56112 14 267 3.06E-54 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0903 684fc83e131d938f3e853843a9a66494 268 Gene3D G3DSA:3.30.200.20 3 96 1.0E-30 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 SMART SM00471 41 153 6.0E-8 T 31-10-2018 IPR003607 HD/PDEase domain Y89_6076 a5040bc72332d751d79564b8946a21be 701 Pfam PF13328 HD domain 26 175 1.1E-51 T 31-10-2018 IPR003607 HD/PDEase domain Y89_6076 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:1.10.3210.10 4 190 6.9E-75 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.10.20.30 381 454 2.3E-30 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_6076 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF55021 624 699 1.93E-7 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF81301 181 392 1.36E-61 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF81271 375 447 1.72E-22 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y89_6076 a5040bc72332d751d79564b8946a21be 701 SMART SM00954 235 345 1.2E-64 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 Y89_6076 a5040bc72332d751d79564b8946a21be 701 Pfam PF13291 ACT domain 622 698 1.5E-15 T 31-10-2018 IPR002912 ACT domain Y89_6076 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.30.70.260 622 701 9.6E-14 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 3.1E-37 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 Y89_6076 a5040bc72332d751d79564b8946a21be 701 SUPERFAMILY SSF109604 6 191 1.44E-70 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 Pfam PF02824 TGS domain 388 447 3.8E-19 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y89_6076 a5040bc72332d751d79564b8946a21be 701 Gene3D G3DSA:3.30.460.10 193 325 2.4E-49 T 31-10-2018 Y89_6076 a5040bc72332d751d79564b8946a21be 701 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 697 4.8E-245 T 31-10-2018 IPR004811 RelA/SpoT family GO:0015969 Y89_2934 5174a07e7468b83eaac064c22f7bc159 173 Pfam PF13671 AAA domain 9 139 2.3E-10 T 31-10-2018 Y89_2934 5174a07e7468b83eaac064c22f7bc159 173 Gene3D G3DSA:3.40.50.300 5 171 1.8E-54 T 31-10-2018 Y89_2934 5174a07e7468b83eaac064c22f7bc159 173 SUPERFAMILY SSF52540 7 167 1.75E-25 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2934 5174a07e7468b83eaac064c22f7bc159 173 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 8 168 1.5E-65 T 31-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 Y89_5133 91ce38b9e7965772b087a355c5c98c98 312 Pfam PF06834 TraU protein 33 300 5.0E-67 T 31-10-2018 IPR009649 TraU Y89_5133 91ce38b9e7965772b087a355c5c98c98 312 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 26 310 4.2E-131 T 31-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 Y89_5558 97003fa3ec092189b51c086e41751509 366 SUPERFAMILY SSF54292 265 365 3.41E-18 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_5558 97003fa3ec092189b51c086e41751509 366 Gene3D G3DSA:3.10.20.30 277 366 6.0E-13 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_5558 97003fa3ec092189b51c086e41751509 366 SUPERFAMILY SSF63380 40 142 4.48E-19 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_5558 97003fa3ec092189b51c086e41751509 366 SUPERFAMILY SSF52343 146 270 1.05E-23 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5558 97003fa3ec092189b51c086e41751509 366 Gene3D G3DSA:3.40.50.80 144 276 2.1E-19 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5558 97003fa3ec092189b51c086e41751509 366 Pfam PF00970 Oxidoreductase FAD-binding domain 75 141 1.1E-5 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_5558 97003fa3ec092189b51c086e41751509 366 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 318 326 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_5558 97003fa3ec092189b51c086e41751509 366 Pfam PF00175 Oxidoreductase NAD-binding domain 151 254 1.8E-9 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_5558 97003fa3ec092189b51c086e41751509 366 Gene3D G3DSA:2.40.30.10 40 138 3.6E-17 T 31-10-2018 Y89_5558 97003fa3ec092189b51c086e41751509 366 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 291 339 1.1E-4 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_4968 186b550de5a0be2015a33e4785959d4c 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 186 3.5E-53 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_4968 186b550de5a0be2015a33e4785959d4c 201 Hamap MF_00528 Septum formation protein Maf [maf]. 3 192 33.669 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_4968 186b550de5a0be2015a33e4785959d4c 201 Pfam PF02545 Maf-like protein 4 187 4.5E-54 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_4968 186b550de5a0be2015a33e4785959d4c 201 Gene3D G3DSA:3.90.950.10 3 191 1.5E-65 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_4968 186b550de5a0be2015a33e4785959d4c 201 PIRSF PIRSF006305 1 194 1.4E-49 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 Y89_4968 186b550de5a0be2015a33e4785959d4c 201 SUPERFAMILY SSF52972 2 187 3.66E-59 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Pfam PF16657 Maltogenic Amylase, C-terminal domain 475 556 2.4E-27 T 31-10-2018 IPR032091 Maltogenic Amylase, C-terminal Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 14 559 2.1E-284 T 31-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SMART SM00642 23 427 7.6E-103 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:3.90.400.10 113 183 2.0E-217 T 31-10-2018 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF56112 724 1041 7.55E-17 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:3.20.20.80 14 469 2.0E-217 T 31-10-2018 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF51445 12 472 2.11E-129 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 576 1090 2.9E-162 T 31-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:3.90.1200.10 808 1099 8.1E-58 T 31-10-2018 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Gene3D G3DSA:2.60.40.1180 475 569 8.3E-36 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 SUPERFAMILY SSF51011 477 558 2.72E-17 T 31-10-2018 Y89_3124 a9e71cf6ebf10874eff300ce7d0ea68e 1100 Pfam PF00128 Alpha amylase, catalytic domain 38 396 3.1E-69 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 100 180 4.6E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 86 184 6.1E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 186 4.1E-34 T 31-10-2018 Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 SUPERFAMILY SSF56784 3 217 2.97E-61 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 6 212 2.9E-52 T 31-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 Gene3D G3DSA:3.40.50.1000 6 206 2.8E-57 T 31-10-2018 IPR023214 HAD superfamily Y89_1844 b17d979e9be3f2c1000c7ed927fb10e1 223 Gene3D G3DSA:1.10.150.240 18 84 2.8E-57 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Pfam PF00072 Response regulator receiver domain 665 776 1.7E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SMART SM00448 663 776 4.1E-41 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Pfam PF00512 His Kinase A (phospho-acceptor) domain 306 370 1.1E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SUPERFAMILY SSF52172 662 781 3.98E-42 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SMART SM00387 416 527 8.2E-40 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SUPERFAMILY SSF52172 542 645 1.46E-6 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SUPERFAMILY SSF55874 359 528 2.36E-48 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 1.3E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 1.3E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 1.3E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 1.3E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 526 1.3E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Gene3D G3DSA:3.30.565.10 369 527 1.3E-48 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SMART SM00388 305 370 2.2E-22 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Gene3D G3DSA:3.40.50.12740 661 782 2.4E-44 T 31-10-2018 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 SUPERFAMILY SSF47384 290 371 1.04E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2197 d907e17e237b8f6d8397ed8e4c66118c 786 Gene3D G3DSA:1.10.287.130 270 368 1.0E-24 T 31-10-2018 Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 PIRSF PIRSF009283 1 357 5.6E-121 T 31-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 Gene3D G3DSA:3.10.180.10 7 161 1.6E-45 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 SUPERFAMILY SSF54593 8 344 2.54E-80 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 17 356 3.0E-124 T 31-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 166 277 2.1E-16 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 Gene3D G3DSA:3.10.180.10 162 357 1.1E-68 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4494 91f22af95170051a29bfe568fa4d35c7 357 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 10 149 2.1E-51 T 31-10-2018 Y89_3403 e5227fc96aee651643ad6ad0802c2fa3 232 SUPERFAMILY SSF102114 18 196 3.4E-21 T 31-10-2018 Y89_3403 e5227fc96aee651643ad6ad0802c2fa3 232 Pfam PF04055 Radical SAM superfamily 27 170 3.3E-15 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_3403 e5227fc96aee651643ad6ad0802c2fa3 232 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 7 194 9.1E-72 T 31-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Y89_3403 e5227fc96aee651643ad6ad0802c2fa3 232 Pfam PF13353 4Fe-4S single cluster domain 19 95 9.9E-9 T 31-10-2018 Y89_3403 e5227fc96aee651643ad6ad0802c2fa3 232 Gene3D G3DSA:3.20.20.70 4 199 6.1E-33 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0934 b07eac8379ab74f3ba9e07ad222a75c0 96 PIRSF PIRSF028291 1 96 4.0E-43 T 31-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 Y89_0934 b07eac8379ab74f3ba9e07ad222a75c0 96 Gene3D G3DSA:3.30.310.50 1 96 6.6E-37 T 31-10-2018 Y89_0934 b07eac8379ab74f3ba9e07ad222a75c0 96 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 6 92 1.5E-29 T 31-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 243 1.5E-24 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 SUPERFAMILY SSF53067 116 245 3.45E-31 T 31-10-2018 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 Gene3D G3DSA:3.30.420.40 5 241 1.3E-85 T 31-10-2018 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 Pfam PF03309 Type III pantothenate kinase 2 200 1.2E-45 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 Gene3D G3DSA:3.30.420.490 117 234 1.3E-85 T 31-10-2018 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 248 18.594 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Y89_0743 50b75d105a933f8b117c4b60fd6b6f99 248 SUPERFAMILY SSF53067 1 113 6.09E-27 T 31-10-2018 Y89_3681 5543d5e228d7c4ca33bb947908cf6f50 158 SMART SM00347 31 131 9.0E-12 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3681 5543d5e228d7c4ca33bb947908cf6f50 158 SUPERFAMILY SSF46785 6 143 1.08E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3681 5543d5e228d7c4ca33bb947908cf6f50 158 Pfam PF12802 MarR family 37 94 8.7E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3681 5543d5e228d7c4ca33bb947908cf6f50 158 Gene3D G3DSA:1.10.10.10 1 142 2.2E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1568 d243245aec86c699a165b8d264972dab 123 Gene3D G3DSA:3.30.1130.10 6 123 4.7E-43 T 31-10-2018 Y89_1568 d243245aec86c699a165b8d264972dab 123 SUPERFAMILY SSF55620 7 120 2.48E-30 T 31-10-2018 Y89_1568 d243245aec86c699a165b8d264972dab 123 SMART SM00905 11 121 1.1E-32 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_1568 d243245aec86c699a165b8d264972dab 123 TIGRFAM TIGR00526 folB_dom: FolB domain 8 119 1.5E-31 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_1568 d243245aec86c699a165b8d264972dab 123 Pfam PF02152 Dihydroneopterin aldolase 11 119 2.1E-25 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_6239 f39b2fc03d9319e97053cf254b469b03 167 Pfam PF01475 Ferric uptake regulator family 35 154 1.3E-11 T 31-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Y89_6239 f39b2fc03d9319e97053cf254b469b03 167 Gene3D G3DSA:1.10.10.10 17 105 1.2E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6239 f39b2fc03d9319e97053cf254b469b03 167 Gene3D G3DSA:3.30.1490.190 106 166 1.4E-14 T 31-10-2018 Y89_6239 f39b2fc03d9319e97053cf254b469b03 167 SUPERFAMILY SSF46785 29 159 4.25E-29 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0083 55a3ef2d43ca38bbdba8b87bd290866e 239 Gene3D G3DSA:3.40.50.300 11 225 9.6E-47 T 31-10-2018 Y89_0083 55a3ef2d43ca38bbdba8b87bd290866e 239 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0083 55a3ef2d43ca38bbdba8b87bd290866e 239 Pfam PF00005 ABC transporter 26 176 9.8E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0083 55a3ef2d43ca38bbdba8b87bd290866e 239 SUPERFAMILY SSF52540 26 212 1.43E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0083 55a3ef2d43ca38bbdba8b87bd290866e 239 SMART SM00382 30 225 4.6E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 7.1E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:1.10.10.10 1 86 1.8E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 SUPERFAMILY SSF46785 1 112 6.01E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 Pfam PF03466 LysR substrate binding domain 89 264 9.5E-39 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 SUPERFAMILY SSF53850 90 321 7.7E-42 T 31-10-2018 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:3.40.190.10 167 267 2.3E-98 T 31-10-2018 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3578 3538cf533c1251bdad3bcc2232f03a2b 324 Gene3D G3DSA:3.40.190.10 92 303 2.3E-98 T 31-10-2018 Y89_2242 c7f2a1efe64f2bdc6b67235951e4da80 531 Gene3D G3DSA:1.10.287.950 202 531 9.2E-67 T 31-10-2018 Y89_2242 c7f2a1efe64f2bdc6b67235951e4da80 531 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 52 142 2.1E-15 T 31-10-2018 IPR029095 NarX-like, N-terminal Y89_2242 c7f2a1efe64f2bdc6b67235951e4da80 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 497 1.1E-43 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2242 c7f2a1efe64f2bdc6b67235951e4da80 531 SUPERFAMILY SSF58104 230 530 4.71E-70 T 31-10-2018 Y89_2242 c7f2a1efe64f2bdc6b67235951e4da80 531 SMART SM00283 266 530 1.1E-70 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 SUPERFAMILY SSF46785 5 87 1.03E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 SUPERFAMILY SSF53850 92 293 3.98E-27 T 31-10-2018 Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Pfam PF03466 LysR substrate binding domain 92 290 1.1E-25 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Gene3D G3DSA:1.10.10.10 1 87 7.1E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1790 4c41bf983e8dc9617c02dfbcf9f0b87d 309 Gene3D G3DSA:3.40.190.290 97 292 7.4E-17 T 31-10-2018 Y89_3603 6a347d3a75ba49253b3c5cd3955eaec2 470 Gene3D G3DSA:3.40.50.11290 207 305 1.2E-43 T 31-10-2018 Y89_3603 6a347d3a75ba49253b3c5cd3955eaec2 470 Pfam PF14403 Circularly permuted ATP-grasp type 2 72 446 3.0E-165 T 31-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 Y89_3603 6a347d3a75ba49253b3c5cd3955eaec2 470 PIRSF PIRSF005522 1 470 4.6E-231 T 31-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 Y89_3603 6a347d3a75ba49253b3c5cd3955eaec2 470 Gene3D G3DSA:3.30.1490.270 342 402 1.7E-25 T 31-10-2018 Y89_3603 6a347d3a75ba49253b3c5cd3955eaec2 470 SUPERFAMILY SSF56059 15 461 5.55E-63 T 31-10-2018 Y89_0112 5f485122e457b7a7ead8c421dd93d1e5 410 TIGRFAM TIGR02270 TIGR02270: conserved hypothetical protein 3 408 1.1E-171 T 31-10-2018 IPR011959 Conserved hypothetical protein CHP02270 Y89_0112 5f485122e457b7a7ead8c421dd93d1e5 410 Gene3D G3DSA:1.25.10.10 99 232 3.6E-9 T 31-10-2018 IPR011989 Armadillo-like helical Y89_0112 5f485122e457b7a7ead8c421dd93d1e5 410 Pfam PF13646 HEAT repeats 149 217 1.7E-7 T 31-10-2018 Y89_0112 5f485122e457b7a7ead8c421dd93d1e5 410 SUPERFAMILY SSF48371 89 310 5.38E-11 T 31-10-2018 IPR016024 Armadillo-type fold Y89_5780 8c4af83850f5f41cdeaa0db6f76c98aa 200 SUPERFAMILY SSF48452 3 196 9.48E-56 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5780 8c4af83850f5f41cdeaa0db6f76c98aa 200 Gene3D G3DSA:1.20.58.320 2 89 2.3E-18 T 31-10-2018 Y89_5780 8c4af83850f5f41cdeaa0db6f76c98aa 200 Gene3D G3DSA:1.25.40.10 90 200 2.0E-32 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5780 8c4af83850f5f41cdeaa0db6f76c98aa 200 Pfam PF06041 Bacterial protein of unknown function (DUF924) 9 197 1.8E-57 T 31-10-2018 IPR010323 Protein of unknown function DUF924 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 321 583 1.0E-27 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 40 167 2.3E-22 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 599 673 3.2E-14 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 SMART SM01008 204 290 1.1E-20 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Gene3D G3DSA:3.30.365.10 342 433 1.3E-43 T 31-10-2018 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Gene3D G3DSA:3.90.1170.50 188 289 1.5E-12 T 31-10-2018 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 PIRSF PIRSF036389 1 742 2.0E-248 T 31-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Gene3D G3DSA:3.30.365.10 38 175 2.8E-35 T 31-10-2018 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Gene3D G3DSA:3.30.365.10 321 550 1.3E-43 T 31-10-2018 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 SUPERFAMILY SSF56003 320 744 2.68E-116 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 Gene3D G3DSA:3.30.365.10 594 747 3.4E-42 T 31-10-2018 Y89_3734 72256735ccfc673cf5d9e8a7701b02f0 748 SUPERFAMILY SSF56003 6 235 9.16E-39 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 SUPERFAMILY SSF51735 5 258 3.29E-61 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 Gene3D G3DSA:3.40.50.720 3 268 1.9E-66 T 31-10-2018 Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 176 0.0092 T 31-10-2018 Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.1E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.1E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.1E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1735 fef2379fe989a36c1d6e63983bd99d02 270 Pfam PF00106 short chain dehydrogenase 5 190 1.9E-49 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1371 ae0903f137882651625603424ba94a71 289 Gene3D G3DSA:3.30.479.20 148 266 2.3E-42 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 1.1E-95 T 31-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 Hamap MF_00050 Elongation factor Ts [tsf]. 1 284 72.278 T 31-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 Gene3D G3DSA:3.30.479.20 57 143 1.4E-21 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 Gene3D G3DSA:1.10.286.20 184 232 2.3E-42 T 31-10-2018 Y89_1371 ae0903f137882651625603424ba94a71 289 SUPERFAMILY SSF54713 143 284 8.37E-49 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 SUPERFAMILY SSF46934 3 56 2.35E-16 T 31-10-2018 IPR009060 UBA-like superfamily GO:0005515 Y89_1371 ae0903f137882651625603424ba94a71 289 SUPERFAMILY SSF54713 56 141 6.21E-14 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 31-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 Pfam PF00889 Elongation factor TS 73 267 1.4E-58 T 31-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 31-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_1371 ae0903f137882651625603424ba94a71 289 Gene3D G3DSA:1.10.8.10 1 56 8.3E-24 T 31-10-2018 Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 Pfam PF00482 Type II secretion system (T2SS), protein F 273 395 1.6E-28 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 Pfam PF00482 Type II secretion system (T2SS), protein F 71 193 1.4E-31 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 Gene3D G3DSA:1.20.81.30 256 367 3.0E-25 T 31-10-2018 Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 403 3.1E-173 T 31-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 7.0E-29 T 31-10-2018 IPR003004 GspF/PilC family Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 7.0E-29 T 31-10-2018 IPR003004 GspF/PilC family Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 7.0E-29 T 31-10-2018 IPR003004 GspF/PilC family Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 7.0E-29 T 31-10-2018 IPR003004 GspF/PilC family Y89_4746 1fc67b63d5b2b86faaa7823594d46813 404 Gene3D G3DSA:1.20.81.30 55 172 2.3E-28 T 31-10-2018 Y89_0628 a40299c3c4ede4849bb06e231d8ce5e6 153 Pfam PF05926 Phage head completion protein (GPL) 15 153 2.7E-38 T 31-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SUPERFAMILY SSF50249 224 658 2.86E-146 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Pfam PF00773 RNB domain 264 597 8.8E-110 T 31-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 79 741 2.0E-228 T 31-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Gene3D G3DSA:2.40.50.140 662 771 4.1E-19 T 31-10-2018 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SUPERFAMILY SSF50249 142 239 6.43E-18 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Gene3D G3DSA:2.40.50.140 81 152 1.1E-17 T 31-10-2018 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 742 2.4E-261 T 31-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SMART SM00955 264 598 3.9E-187 T 31-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Pfam PF08461 Ribonuclease R winged-helix domain 27 81 4.6E-8 T 31-10-2018 IPR013668 Ribonuclease R winged-helix domain Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SMART SM00316 659 742 3.9E-11 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Hamap MF_01895 Ribonuclease R [rnr]. 42 742 57.11 T 31-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SUPERFAMILY SSF50249 661 741 2.46E-20 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Pfam PF08206 Ribonuclease B OB domain 91 148 5.9E-22 T 31-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SUPERFAMILY SSF50249 71 151 1.5E-17 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 ProSitePatterns PS01175 Ribonuclease II family signature. 565 589 - T 31-10-2018 IPR022966 Ribonuclease II/R, conserved site Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 Pfam PF00575 S1 RNA binding domain 659 740 6.9E-11 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_5607 240a7e3c4b28dfaaa5e81694498ed62c 904 SMART SM00357 90 149 5.1E-12 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_5354 31be409f61215d3456c3847c96991c27 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 8.0E-40 T 31-10-2018 Y89_5354 31be409f61215d3456c3847c96991c27 89 Gene3D G3DSA:1.10.287.10 2 89 2.7E-34 T 31-10-2018 Y89_5354 31be409f61215d3456c3847c96991c27 89 SUPERFAMILY SSF47060 3 89 2.68E-34 T 31-10-2018 IPR009068 S15/NS1, RNA-binding Y89_5354 31be409f61215d3456c3847c96991c27 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5354 31be409f61215d3456c3847c96991c27 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 1.2E-37 T 31-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5354 31be409f61215d3456c3847c96991c27 89 Pfam PF00312 Ribosomal protein S15 8 88 5.5E-36 T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5354 31be409f61215d3456c3847c96991c27 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 20.97 T 31-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5354 31be409f61215d3456c3847c96991c27 89 SMART SM01387 8 88 5.2E-50 T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 SUPERFAMILY SSF46689 67 131 2.78E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 ProSitePatterns PS01043 Transposases, IS30 family, signature. 397 413 - T 31-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 Pfam PF00665 Integrase core domain 290 410 6.0E-8 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 SUPERFAMILY SSF53098 288 455 1.67E-23 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 Pfam PF13936 Helix-turn-helix domain 76 119 3.0E-18 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain Y89_0601 71b90d710e8174caf567d2e1c8284f2f 465 Gene3D G3DSA:3.30.420.10 289 463 3.8E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 SMART SM00836 581 684 0.0029 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 Pfam PF05746 DALR anticodon binding domain 578 672 1.2E-6 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 SUPERFAMILY SSF109604 335 486 2.04E-17 T 31-10-2018 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 546 1.2E-205 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 684 25.418 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 242 257 2.6E-35 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 314 330 2.6E-35 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 390 409 2.6E-35 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 51 63 2.6E-35 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 2.6E-35 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0014 8bc7fd815745ff40f6c11be2528ae22b 685 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 2 684 4.1E-245 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 339 1.0E-57 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 SUPERFAMILY SSF51395 2 368 1.23E-94 T 31-10-2018 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 385 614 1.4E-10 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 SUPERFAMILY SSF51905 363 648 3.5E-30 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 Gene3D G3DSA:3.50.50.60 481 605 3.9E-69 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 Gene3D G3DSA:3.40.50.720 386 641 3.9E-69 T 31-10-2018 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 Gene3D G3DSA:3.20.20.70 1 381 2.3E-107 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 487 1.8E-7 T 31-10-2018 Y89_5657 63d784c9d5740b4dffbc9f3a88d043b4 648 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 387 406 1.8E-7 T 31-10-2018 Y89_0375 3bea9bf6bf68cec503f249458148cede 398 Gene3D G3DSA:3.40.50.150 183 395 3.2E-68 T 31-10-2018 Y89_0375 3bea9bf6bf68cec503f249458148cede 398 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 171 344 8.3E-19 T 31-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y89_0375 3bea9bf6bf68cec503f249458148cede 398 SUPERFAMILY SSF53335 85 391 2.3E-73 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0375 3bea9bf6bf68cec503f249458148cede 398 Gene3D G3DSA:3.30.750.80 79 181 1.1E-29 T 31-10-2018 Y89_0375 3bea9bf6bf68cec503f249458148cede 398 SUPERFAMILY SSF88697 4 75 3.73E-9 T 31-10-2018 IPR015947 PUA-like superfamily Y89_0375 3bea9bf6bf68cec503f249458148cede 398 Gene3D G3DSA:2.30.130.10 5 75 3.6E-14 T 31-10-2018 IPR036974 PUA domain superfamily GO:0003723 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 Pfam PF07238 PilZ domain 16 115 2.1E-11 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 Gene3D G3DSA:2.40.50.100 262 292 3.0E-7 T 31-10-2018 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 Gene3D G3DSA:2.40.30.170 293 371 3.0E-7 T 31-10-2018 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 Gene3D G3DSA:2.40.10.220 14 124 1.2E-44 T 31-10-2018 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 SUPERFAMILY SSF141371 10 124 2.35E-10 T 31-10-2018 Y89_1485 e20c377eebe10d3af09bd6c494a64ae8 389 Pfam PF13437 HlyD family secretion protein 262 357 4.5E-10 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 1.5E-20 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.5E-20 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 1.5E-20 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 1.5E-20 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 1.5E-20 T 31-10-2018 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 SUPERFAMILY SSF51905 6 364 1.81E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 Pfam PF01494 FAD binding domain 6 348 7.1E-34 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 Gene3D G3DSA:3.50.50.60 7 343 3.1E-120 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0832 c0bac28cf17177dc950dff93e355bcb4 398 Gene3D G3DSA:3.30.9.50 48 272 3.1E-120 T 31-10-2018 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 SUPERFAMILY SSF53383 41 401 2.7E-123 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 20 400 8.6E-205 T 31-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 21 401 55.072 T 31-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 Gene3D G3DSA:3.40.640.10 16 266 2.7E-91 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 PIRSF PIRSF001434 7 403 1.2E-134 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 20 400 1.5E-144 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 Gene3D G3DSA:3.90.1150.10 270 403 4.0E-52 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1912 8fbbaf8a65853fdd7dca178c5a6109e6 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 211 225 - T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.40.50.300 193 379 1.9E-57 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SMART SM00091 82 148 9.6E-9 T 31-10-2018 IPR000014 PAS domain Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:1.10.8.60 383 455 1.6E-20 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.30.70.260 1 83 1.3E-24 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF46689 459 514 1.48E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 421 430 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 469 515 1.7E-21 T 31-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF01842 ACT domain 3 64 1.9E-8 T 31-10-2018 IPR002912 ACT domain Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF52540 207 449 4.9E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SMART SM00382 227 372 1.2E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 231 244 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF00158 Sigma-54 interaction domain 208 374 1.7E-58 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:1.10.10.60 461 516 1.3E-20 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Gene3D G3DSA:3.30.450.20 84 191 5.2E-23 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF55021 2 72 2.33E-9 T 31-10-2018 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 Pfam PF00989 PAS fold 83 140 1.5E-6 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_4486 d8778b5dafb59de1d5bcca8931238f78 519 SUPERFAMILY SSF55785 84 142 3.66E-9 T 31-10-2018 IPR035965 PAS domain superfamily Y89_1518 4a680e966d172778f030a7f909303712 774 SUPERFAMILY SSF142019 87 294 3.66E-56 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1518 4a680e966d172778f030a7f909303712 774 Pfam PF13183 4Fe-4S dicluster domain 367 422 3.9E-8 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_1518 4a680e966d172778f030a7f909303712 774 Gene3D G3DSA:3.30.70.20 364 485 4.0E-11 T 31-10-2018 Y89_1518 4a680e966d172778f030a7f909303712 774 Pfam PF10531 SLBB domain 290 337 9.2E-8 T 31-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1518 4a680e966d172778f030a7f909303712 774 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 131 275 4.6E-48 T 31-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1518 4a680e966d172778f030a7f909303712 774 Gene3D G3DSA:3.40.50.11540 136 283 7.4E-13 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1518 4a680e966d172778f030a7f909303712 774 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 758 192.261 T 31-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Y89_1518 4a680e966d172778f030a7f909303712 774 Pfam PF13375 RnfC Barrel sandwich hybrid domain 6 106 4.7E-32 T 31-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Y89_1518 4a680e966d172778f030a7f909303712 774 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 408 419 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_1518 4a680e966d172778f030a7f909303712 774 SUPERFAMILY SSF46548 324 437 1.05E-17 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_1518 4a680e966d172778f030a7f909303712 774 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 4 438 1.3E-192 T 31-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 SUPERFAMILY SSF47648 1 67 2.88E-21 T 31-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 7 338 4.0E-121 T 31-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 38.441 T 31-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 64 4.0E-19 T 31-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 Gene3D G3DSA:3.40.1030.10 73 347 3.7E-100 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 Gene3D G3DSA:1.20.970.10 1 70 8.4E-28 T 31-10-2018 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 SUPERFAMILY SSF52418 75 340 1.57E-87 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_0723 7c0bb481fd65a00b1a42ebd420899cac 349 Pfam PF00591 Glycosyl transferase family, a/b domain 75 329 9.5E-102 T 31-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_0831 dc793f79fc85783fed4bd85135724be8 334 PRINTS PR00682 Isopenicillin N synthase signature 29 46 5.7E-14 T 31-10-2018 Y89_0831 dc793f79fc85783fed4bd85135724be8 334 PRINTS PR00682 Isopenicillin N synthase signature 236 262 5.7E-14 T 31-10-2018 Y89_0831 dc793f79fc85783fed4bd85135724be8 334 PRINTS PR00682 Isopenicillin N synthase signature 201 222 5.7E-14 T 31-10-2018 Y89_0831 dc793f79fc85783fed4bd85135724be8 334 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 6 129 2.4E-31 T 31-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain Y89_0831 dc793f79fc85783fed4bd85135724be8 334 Gene3D G3DSA:2.60.120.330 1 326 2.8E-95 T 31-10-2018 IPR027443 Isopenicillin N synthase-like Y89_0831 dc793f79fc85783fed4bd85135724be8 334 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 181 276 2.5E-23 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y89_0831 dc793f79fc85783fed4bd85135724be8 334 SUPERFAMILY SSF51197 4 290 1.72E-89 T 31-10-2018 Y89_2093 b045ea49b97b6733988ee15a151036ff 204 PIRSF PIRSF006324 1 203 3.9E-45 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_2093 b045ea49b97b6733988ee15a151036ff 204 Pfam PF01810 LysE type translocator 14 200 9.0E-30 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 SUPERFAMILY SSF54523 45 147 2.09E-34 T 31-10-2018 Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 Pfam PF08334 Type II secretion system (T2SS), protein G 41 147 3.7E-40 T 31-10-2018 IPR013545 Type II secretion system protein G Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 39 1.1E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 Gene3D G3DSA:3.30.700.10 41 147 9.3E-37 T 31-10-2018 Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 18 43 3.1E-16 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 54 72 3.1E-16 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 38 1.8E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4752 535e5c93fac504cf8b1ebbad95d742a0 149 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 148 4.6E-55 T 31-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y89_3434 5cd974247938799d3863d42fb2678fb4 207 Gene3D G3DSA:1.20.1050.10 84 202 4.5E-44 T 31-10-2018 Y89_3434 5cd974247938799d3863d42fb2678fb4 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 7.0E-15 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3434 5cd974247938799d3863d42fb2678fb4 207 SUPERFAMILY SSF47616 80 200 5.57E-28 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_3434 5cd974247938799d3863d42fb2678fb4 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 111 196 6.0E-6 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3434 5cd974247938799d3863d42fb2678fb4 207 Gene3D G3DSA:3.40.30.10 1 83 7.2E-33 T 31-10-2018 Y89_3434 5cd974247938799d3863d42fb2678fb4 207 SUPERFAMILY SSF52833 1 85 1.88E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 SUPERFAMILY SSF55031 174 279 1.09E-21 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 100 137 - T 31-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 Gene3D G3DSA:3.40.630.10 11 368 3.0E-106 T 31-10-2018 Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 Pfam PF01546 Peptidase family M20/M25/M40 66 378 6.1E-37 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 Pfam PF07687 Peptidase dimerisation domain 171 280 3.2E-25 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 6 377 1.4E-123 T 31-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 SUPERFAMILY SSF53187 5 379 5.71E-61 T 31-10-2018 Y89_6128 7a3e51ac572cd116a0862026f25c0bf9 384 Gene3D G3DSA:3.30.70.360 174 291 3.0E-106 T 31-10-2018 Y89_2152 d36e99e0e58f0fc577e7392c721e26a8 525 Gene3D G3DSA:3.30.70.270 348 523 4.2E-58 T 31-10-2018 Y89_2152 d36e99e0e58f0fc577e7392c721e26a8 525 SMART SM00267 350 523 4.3E-63 T 31-10-2018 IPR000160 GGDEF domain Y89_2152 d36e99e0e58f0fc577e7392c721e26a8 525 Pfam PF00990 Diguanylate cyclase, GGDEF domain 361 519 3.3E-47 T 31-10-2018 IPR000160 GGDEF domain Y89_2152 d36e99e0e58f0fc577e7392c721e26a8 525 SUPERFAMILY SSF55073 366 522 5.18E-49 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_2152 d36e99e0e58f0fc577e7392c721e26a8 525 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 359 522 3.4E-52 T 31-10-2018 IPR000160 GGDEF domain Y89_0078 b896da09e0ed331c49a8d53b17fc00d8 91 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 80 1.2E-36 T 31-10-2018 IPR012658 Conserved hypothetical protein CHP02443 Y89_0078 b896da09e0ed331c49a8d53b17fc00d8 91 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 5 54 2.4E-25 T 31-10-2018 IPR012658 Conserved hypothetical protein CHP02443 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 Pfam PF00108 Thiolase, N-terminal domain 5 265 4.1E-61 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 Gene3D G3DSA:3.40.47.10 6 281 8.7E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 Pfam PF02803 Thiolase, C-terminal domain 276 399 1.4E-42 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 Gene3D G3DSA:3.40.47.10 140 397 8.7E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 PIRSF PIRSF000429 1 401 1.2E-121 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 SUPERFAMILY SSF53901 3 274 6.57E-66 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 SUPERFAMILY SSF53901 276 399 1.43E-41 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 3.7E-121 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1437 6a2a8b9a7df357b8fdabd27558f41da8 401 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Pfam PF00005 ABC transporter 22 178 1.3E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 SMART SM00382 303 494 1.5E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 SMART SM00382 30 228 2.0E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 496 527 1.8E-6 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 255 2.2E-4 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 SUPERFAMILY SSF52540 270 516 6.71E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 ProSitePatterns PS00211 ABC transporters family signature. 417 431 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 SUPERFAMILY SSF52540 4 254 4.79E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Gene3D G3DSA:3.40.50.300 267 532 7.8E-85 T 31-10-2018 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Gene3D G3DSA:3.40.50.300 3 266 1.0E-85 T 31-10-2018 Y89_3214 2f3b663664b81fce52dc337a1c961ee2 536 Pfam PF00005 ABC transporter 295 445 5.2E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4857 4782a3d3b48ab8160ead0ec53b9f56fb 446 Gene3D G3DSA:1.20.1420.20 30 429 9.8E-83 T 31-10-2018 IPR038352 Imelysin-like domain superfamily Y89_4857 4782a3d3b48ab8160ead0ec53b9f56fb 446 Pfam PF09375 Imelysin 67 423 3.9E-97 T 31-10-2018 IPR018976 Imelysin-like domain Y89_2792 67e1b46424ff8a8b3483940483dbedb2 251 Gene3D G3DSA:3.40.50.300 12 247 6.5E-45 T 31-10-2018 Y89_2792 67e1b46424ff8a8b3483940483dbedb2 251 Pfam PF00005 ABC transporter 31 171 1.2E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2792 67e1b46424ff8a8b3483940483dbedb2 251 SMART SM00382 40 226 8.6E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2792 67e1b46424ff8a8b3483940483dbedb2 251 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2792 67e1b46424ff8a8b3483940483dbedb2 251 SUPERFAMILY SSF52540 9 218 4.87E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 167 185 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 3 15 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 111 133 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 79 98 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 185 202 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 62 79 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 Gene3D G3DSA:3.40.50.850 1 207 8.0E-88 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 SUPERFAMILY SSF52499 3 207 6.67E-62 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 Pfam PF00857 Isochorismatase family 33 204 3.5E-35 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_0809 9a0c0fd485c1dae168d87bc25b177f75 207 PIRSF PIRSF001111 2 207 7.2E-94 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 167 185 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 3 15 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 111 133 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 79 98 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 185 202 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PRINTS PR01398 Isochorismatase signature 62 79 4.1E-58 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 Gene3D G3DSA:3.40.50.850 1 207 8.0E-88 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 SUPERFAMILY SSF52499 3 207 6.67E-62 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 Pfam PF00857 Isochorismatase family 33 204 3.5E-35 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_3422 9a0c0fd485c1dae168d87bc25b177f75 207 PIRSF PIRSF001111 2 207 7.2E-94 T 31-10-2018 IPR016291 Isochorismatase GO:0008908 Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Gene3D G3DSA:3.30.70.270 419 599 7.8E-59 T 31-10-2018 Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SMART SM00091 303 371 7.2E-7 T 31-10-2018 IPR000014 PAS domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SMART SM00052 595 837 3.0E-106 T 31-10-2018 IPR001633 EAL domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 300 420 4.0E-14 T 31-10-2018 IPR000014 PAS domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SUPERFAMILY SSF55073 430 585 7.22E-49 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SUPERFAMILY SSF55785 291 412 6.28E-16 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Pfam PF05228 CHASE4 domain 59 219 1.5E-18 T 31-10-2018 IPR007892 CHASE4 Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 421 582 6.5E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Pfam PF00990 Diguanylate cyclase, GGDEF domain 426 581 1.3E-48 T 31-10-2018 IPR000160 GGDEF domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Pfam PF00563 EAL domain 602 832 7.0E-67 T 31-10-2018 IPR001633 EAL domain Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Gene3D G3DSA:3.20.20.450 600 846 1.8E-92 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SUPERFAMILY SSF141868 600 844 5.1E-85 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 Gene3D G3DSA:3.30.450.20 289 412 1.8E-15 T 31-10-2018 Y89_3203 7e8c02baaba3659a00d4d196b39a9f63 864 SMART SM00267 414 585 1.8E-63 T 31-10-2018 IPR000160 GGDEF domain Y89_0373 fc83a4ca9910cbd9e371c34f70303f53 461 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 25 448 1.3E-121 T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_0373 fc83a4ca9910cbd9e371c34f70303f53 461 Pfam PF00860 Permease family 29 420 2.4E-94 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_0373 fc83a4ca9910cbd9e371c34f70303f53 461 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 368 388 - T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_0373 fc83a4ca9910cbd9e371c34f70303f53 461 TIGRFAM TIGR03173 pbuX: xanthine permease 33 452 4.0E-128 T 31-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 Gene3D G3DSA:3.30.2010.10 56 141 1.3E-6 T 31-10-2018 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 Pfam PF01435 Peptidase family M48 67 250 5.0E-32 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 Pfam PF14559 Tetratricopeptide repeat 281 336 3.9E-6 T 31-10-2018 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 3 475 36.751 T 31-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 SUPERFAMILY SSF48452 284 447 2.67E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4352 a7164cc8db2817771ad3444e1a09d72c 477 Gene3D G3DSA:1.25.40.10 249 471 1.4E-14 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52518 52 460 6.59E-140 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 2 880 0.0 T 31-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.970 465 698 1.3E-111 T 31-10-2018 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52922 694 880 1.17E-63 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.920 699 881 5.1E-79 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 SUPERFAMILY SSF52518 466 693 2.94E-97 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 123 287 4.2E-8 T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 Gene3D G3DSA:3.40.50.970 51 464 7.4E-131 T 31-10-2018 Y89_5687 f06b8e008d9f7d67ad4bbcde6468126f 882 PIRSF PIRSF000156 1 882 0.0 T 31-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 Gene3D G3DSA:2.30.42.10 253 338 4.0E-11 T 31-10-2018 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 221 576 3.6E-96 T 31-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 SUPERFAMILY SSF52096 199 560 2.15E-69 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 Pfam PF03572 Peptidase family S41 381 554 3.7E-51 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 SUPERFAMILY SSF50156 255 339 4.03E-9 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 SMART SM00245 347 556 3.1E-56 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 Gene3D G3DSA:3.90.226.10 346 573 8.1E-64 T 31-10-2018 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 560 700 6.5E-37 T 31-10-2018 IPR020992 Tail specific protease, C-terminal Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 257 337 1.1E-9 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_1757 77165261dd9ef9bf1fe25567c0762b18 709 SMART SM00228 264 341 6.7E-5 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 SUPERFAMILY SSF89447 1 119 1.26E-35 T 31-10-2018 IPR037914 SpoVT-AbrB domain superfamily Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 Gene3D G3DSA:2.40.330.20 1 122 2.5E-35 T 31-10-2018 IPR038619 MraZ superfamily Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 119 4.2E-37 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 134 47.909 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 Pfam PF02381 MraZ protein, putative antitoxin-like 2 58 7.2E-8 T 31-10-2018 IPR020603 MraZ domain Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 Pfam PF02381 MraZ protein, putative antitoxin-like 61 115 3.3E-15 T 31-10-2018 IPR020603 MraZ domain Y89_4910 03ac36b5b8b72b6deb97dab4d973e72a 134 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 115 8.0E-54 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 PIRSF PIRSF037375 2 646 1.8E-220 T 31-10-2018 IPR017186 Lipase, autotransporter EstA Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 32 325 8.3E-14 T 31-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 Gene3D G3DSA:3.40.50.1110 19 338 3.6E-133 T 31-10-2018 IPR036514 SGNH hydrolase superfamily Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 SUPERFAMILY SSF103515 349 646 8.11E-47 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 Gene3D G3DSA:2.40.128.130 339 646 1.5E-83 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 Pfam PF03797 Autotransporter beta-domain 374 626 1.9E-47 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 SMART SM00869 370 636 8.8E-36 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 SUPERFAMILY SSF52266 30 330 1.53E-15 T 31-10-2018 Y89_5783 1b6b6a1a7f87e85ee2017bec4f13b6bf 646 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 32 43 - T 31-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SMART SM00490 262 343 1.8E-31 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SUPERFAMILY SSF52540 78 360 5.48E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Gene3D G3DSA:3.40.50.300 222 420 1.1E-49 T 31-10-2018 Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 SMART SM00487 24 225 3.4E-54 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Pfam PF00271 Helicase conserved C-terminal domain 238 343 1.4E-28 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Pfam PF00270 DEAD/DEAH box helicase 29 192 2.0E-46 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_1540 4e6e01b735dd1ec6fe1a73f4a21ce984 446 Gene3D G3DSA:3.40.50.300 2 221 3.5E-70 T 31-10-2018 Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Gene3D G3DSA:2.160.20.110 855 1006 4.3E-6 T 31-10-2018 Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Gene3D G3DSA:2.160.20.110 507 689 4.5E-14 T 31-10-2018 Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Gene3D G3DSA:2.160.20.110 756 854 1.8E-5 T 31-10-2018 Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 SMART SM00912 51 166 4.2E-45 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 88 162 1.3E-27 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 22 1.2E-8 T 31-10-2018 IPR024973 ESPR domain Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Pfam PF07581 The GLUG motif 718 741 5.5E-5 T 31-10-2018 IPR011493 GLUG Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Pfam PF07581 The GLUG motif 647 677 0.0025 T 31-10-2018 IPR011493 GLUG Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Gene3D G3DSA:2.160.20.10 54 408 1.3E-74 T 31-10-2018 IPR012334 Pectin lyase fold Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 SUPERFAMILY SSF51126 45 343 3.45E-43 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_0942 e881a9c8c7f45cadf9288da39f07983a 1018 Pfam PF05860 haemagglutination activity domain 53 165 5.3E-27 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_3994 dfb290a91045cbf40965e1c3594048e3 89 SUPERFAMILY SSF54285 4 89 1.57E-15 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y89_3994 dfb290a91045cbf40965e1c3594048e3 89 Gene3D G3DSA:3.10.20.30 3 89 5.1E-17 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_3994 dfb290a91045cbf40965e1c3594048e3 89 Pfam PF02597 ThiS family 22 89 3.9E-7 T 31-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Y89_0389 ec0c21d7f1c9a05a6a841c68bb670351 136 SUPERFAMILY SSF55729 12 119 5.32E-16 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0389 ec0c21d7f1c9a05a6a841c68bb670351 136 Gene3D G3DSA:3.40.630.30 10 128 8.2E-17 T 31-10-2018 Y89_0389 ec0c21d7f1c9a05a6a841c68bb670351 136 Pfam PF00583 Acetyltransferase (GNAT) family 40 119 3.2E-7 T 31-10-2018 IPR000182 GNAT domain Y89_0812 71aec11231bb4f3cf77a4bafbddbac18 162 SUPERFAMILY SSF54427 20 149 6.18E-25 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_0812 71aec11231bb4f3cf77a4bafbddbac18 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 17 162 2.0E-83 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_0812 71aec11231bb4f3cf77a4bafbddbac18 162 Pfam PF03284 Phenazine biosynthesis protein A/B 14 162 1.5E-85 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_0812 71aec11231bb4f3cf77a4bafbddbac18 162 Gene3D G3DSA:3.10.450.50 12 152 1.0E-44 T 31-10-2018 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 Pfam PF12833 Helix-turn-helix domain 170 246 1.1E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 SUPERFAMILY SSF46689 201 247 3.09E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 242 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 246 7.4E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 230 7.4E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 Gene3D G3DSA:1.10.10.60 148 252 3.1E-21 T 31-10-2018 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 Pfam PF02311 AraC-like ligand binding domain 18 79 6.4E-7 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 SMART SM00342 164 246 3.7E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2713 08eb2908aca0587ad472c8a4524935b6 254 SUPERFAMILY SSF51182 20 212 9.78E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 625 37.77 T 31-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 SMART SM00382 186 325 6.4E-26 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 SUPERFAMILY SSF140990 404 606 2.35E-77 T 31-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:1.20.58.760 399 601 2.3E-75 T 31-10-2018 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:3.40.50.300 139 324 5.7E-70 T 31-10-2018 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:2.40.50.920 22 100 2.2E-15 T 31-10-2018 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Gene3D G3DSA:1.10.8.60 325 398 2.8E-27 T 31-10-2018 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 99 596 2.4E-239 T 31-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF06480 FtsH Extracellular 5 91 1.2E-12 T 31-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 31-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 SUPERFAMILY SSF52540 145 393 7.98E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF01434 Peptidase family M41 384 595 1.0E-81 T 31-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Y89_5363 df0cdcf7573af69298f2bab61f0be212 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 322 9.8E-46 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3294 3271dee226a769b19d9c482c099f9532 157 SUPERFAMILY SSF46785 5 93 4.01E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3294 3271dee226a769b19d9c482c099f9532 157 Gene3D G3DSA:3.30.70.920 58 142 7.6E-25 T 31-10-2018 Y89_3294 3271dee226a769b19d9c482c099f9532 157 Gene3D G3DSA:1.10.10.10 6 57 3.3E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3294 3271dee226a769b19d9c482c099f9532 157 SMART SM00344 5 114 3.7E-38 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_3294 3271dee226a769b19d9c482c099f9532 157 SUPERFAMILY SSF54909 65 154 3.08E-21 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3294 3271dee226a769b19d9c482c099f9532 157 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 5.2E-21 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_3294 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3294 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3294 3271dee226a769b19d9c482c099f9532 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.0E-13 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3294 3271dee226a769b19d9c482c099f9532 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y89_3294 3271dee226a769b19d9c482c099f9532 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 6.6E-19 T 31-10-2018 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SMART SM00387 288 399 8.5E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Gene3D G3DSA:3.40.50.2300 416 531 1.1E-14 T 31-10-2018 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Gene3D G3DSA:3.30.565.10 249 398 7.8E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SMART SM00388 179 244 1.3E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 289 394 1.7E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Gene3D G3DSA:1.10.287.130 160 242 1.0E-14 T 31-10-2018 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 244 2.0E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SUPERFAMILY SSF47384 163 245 1.04E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SMART SM00448 419 526 2.5E-4 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 Pfam PF00072 Response regulator receiver domain 421 526 3.0E-7 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SUPERFAMILY SSF55874 234 394 3.01E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.6E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 1.6E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.6E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3953 0ba42feff30356ef8ab00bbeb4bb1539 540 SUPERFAMILY SSF52172 417 532 1.85E-15 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 8.8E-40 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 SUPERFAMILY SSF53901 3 268 5.26E-81 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 5.2E-128 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 SUPERFAMILY SSF53901 269 390 2.98E-40 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 Gene3D G3DSA:3.40.47.10 5 274 2.3E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 2.7E-88 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 PIRSF PIRSF000429 1 391 2.1E-113 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1098 0b3364580d05541f0aa66b4b87c2b5c6 391 Gene3D G3DSA:3.40.47.10 126 387 2.3E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 Pfam PF01471 Putative peptidoglycan binding domain 339 393 6.3E-11 T 31-10-2018 IPR002477 Peptidoglycan binding-like Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 25 319 9.7E-111 T 31-10-2018 IPR011970 Lytic murein transglycosylase Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 SUPERFAMILY SSF47090 324 393 3.14E-14 T 31-10-2018 IPR036365 PGBD-like superfamily Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 SUPERFAMILY SSF53955 10 322 8.81E-99 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 Gene3D G3DSA:1.10.530.10 67 315 2.2E-80 T 31-10-2018 Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 Pfam PF13406 Transglycosylase SLT domain 25 316 6.3E-104 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 Gene3D G3DSA:1.10.101.10 331 398 3.3E-10 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Y89_4182 5fd699c71645a31b8930f10d2e32c266 398 Gene3D G3DSA:1.10.8.350 34 200 2.2E-80 T 31-10-2018 Y89_2884 5d0484f5988d192ecd1d3e492be0e6fe 567 Gene3D G3DSA:3.30.420.240 339 520 5.8E-6 T 31-10-2018 Y89_2884 5d0484f5988d192ecd1d3e492be0e6fe 567 PIRSF PIRSF007056 20 556 4.0E-227 T 31-10-2018 IPR012036 Bacteriophage Mu, Gp28 Y89_2884 5d0484f5988d192ecd1d3e492be0e6fe 567 Gene3D G3DSA:3.40.50.300 47 234 1.5E-30 T 31-10-2018 Y89_5941 221e900e26040134f33aae0e34ca02df 159 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 4 113 7.5E-30 T 31-10-2018 IPR012659 Conserved hypothetical protein CHP02444 Y89_5941 221e900e26040134f33aae0e34ca02df 159 Pfam PF09523 Protein of unknown function (DUF2390) 5 110 1.6E-32 T 31-10-2018 IPR012659 Conserved hypothetical protein CHP02444 Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 Pfam PF12848 ABC transporter 216 300 5.8E-21 T 31-10-2018 IPR032781 ABC-transporter extension domain Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 Pfam PF00005 ABC transporter 10 176 7.0E-18 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 SMART SM00382 336 503 9.2E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 SMART SM00382 18 237 2.4E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 SUPERFAMILY SSF52540 289 518 1.98E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 Gene3D G3DSA:3.40.50.300 274 519 2.1E-55 T 31-10-2018 Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 Pfam PF00005 ABC transporter 328 457 1.3E-20 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 Gene3D G3DSA:3.40.50.300 2 272 1.3E-54 T 31-10-2018 Y89_3360 2ee1b2a0fc3321c24f7ad6a170a09c75 521 SUPERFAMILY SSF52540 3 229 4.17E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3508 7380332c16d8d6fb5bf29ec0e58a40c2 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 270 4.0E-46 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_3508 7380332c16d8d6fb5bf29ec0e58a40c2 270 Gene3D G3DSA:3.90.226.10 1 212 7.2E-68 T 31-10-2018 Y89_3508 7380332c16d8d6fb5bf29ec0e58a40c2 270 SUPERFAMILY SSF52096 3 269 5.15E-79 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3508 7380332c16d8d6fb5bf29ec0e58a40c2 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 111 131 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_3508 7380332c16d8d6fb5bf29ec0e58a40c2 270 Gene3D G3DSA:1.10.12.10 213 270 1.0E-25 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF13616 PPIC-type PPIASE domain 282 385 1.8E-28 T 31-10-2018 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Hamap MF_01183 Chaperone SurA [surA]. 12 430 33.027 T 31-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:3.10.50.40 285 423 3.8E-44 T 31-10-2018 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF54534 285 387 5.76E-34 T 31-10-2018 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF00639 PPIC-type PPIASE domain 184 276 6.6E-19 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF54534 177 281 9.81E-26 T 31-10-2018 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Pfam PF09312 SurA N-terminal domain 30 147 6.5E-46 T 31-10-2018 IPR015391 SurA N-terminal Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:1.10.4030.30 31 284 5.3E-75 T 31-10-2018 Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 SUPERFAMILY SSF109998 30 206 1.28E-44 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily Y89_0666 a1c3ef147d8db149c24b84c4057ee411 430 Gene3D G3DSA:3.10.50.40 177 279 5.3E-75 T 31-10-2018 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Gene3D G3DSA:1.10.760.10 296 419 6.5E-31 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 SUPERFAMILY SSF46626 434 539 3.67E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 SUPERFAMILY SSF46626 311 416 4.5E-20 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Pfam PF00034 Cytochrome c 563 651 1.3E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Pfam PF00034 Cytochrome c 34 132 2.0E-4 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 SUPERFAMILY SSF46626 180 290 2.55E-14 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Gene3D G3DSA:1.10.760.10 550 673 7.2E-42 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 SUPERFAMILY SSF46626 552 659 6.63E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Gene3D G3DSA:1.10.760.10 420 549 1.2E-36 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Gene3D G3DSA:1.10.760.10 8 137 6.8E-11 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Gene3D G3DSA:1.10.760.10 172 285 2.0E-6 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 SUPERFAMILY SSF46626 24 156 2.52E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5178 afa86017619a5612f5d7c05ea86a89fa 675 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 311 392 1.1E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 SUPERFAMILY SSF141986 158 304 3.01E-32 T 31-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 Gene3D G3DSA:3.50.30.60 171 307 9.1E-43 T 31-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 Pfam PF02016 LD-carboxypeptidase 18 299 3.4E-61 T 31-10-2018 IPR003507 Peptidase family S66 Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 PIRSF PIRSF028757 13 307 2.1E-86 T 31-10-2018 IPR003507 Peptidase family S66 Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 Gene3D G3DSA:3.40.50.10740 1 170 2.0E-69 T 31-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal Y89_5885 9cd80f1848b74fd3ed7273abbb4b4d37 307 SUPERFAMILY SSF52317 14 143 1.37E-37 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_6028 5ab71dfa47a1323cf45ca07b7590d23a 154 SUPERFAMILY SSF52540 27 150 6.07E-7 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6028 5ab71dfa47a1323cf45ca07b7590d23a 154 Pfam PF01078 Magnesium chelatase, subunit ChlI 1 47 5.7E-17 T 31-10-2018 IPR000523 Magnesium chelatase ChlI domain Y89_6028 5ab71dfa47a1323cf45ca07b7590d23a 154 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 59 149 9.0E-27 T 31-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain Y89_6028 5ab71dfa47a1323cf45ca07b7590d23a 154 Gene3D G3DSA:3.40.50.300 1 154 3.7E-15 T 31-10-2018 Y89_0757 dd971f6437737517386859d1c18ee849 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 59.678 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0757 dd971f6437737517386859d1c18ee849 397 SUPERFAMILY SSF52540 6 222 4.15E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0757 dd971f6437737517386859d1c18ee849 397 SUPERFAMILY SSF50465 301 396 3.74E-36 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y89_0757 dd971f6437737517386859d1c18ee849 397 Gene3D G3DSA:3.40.50.300 1 206 6.5E-72 T 31-10-2018 Y89_0757 dd971f6437737517386859d1c18ee849 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 204 2.6E-57 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 1.1E-33 T 31-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Y89_0757 dd971f6437737517386859d1c18ee849 397 Pfam PF03144 Elongation factor Tu domain 2 228 296 1.2E-15 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 397 1.7E-226 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0757 dd971f6437737517386859d1c18ee849 397 Gene3D G3DSA:2.40.30.10 209 337 2.2E-53 T 31-10-2018 Y89_0757 dd971f6437737517386859d1c18ee849 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0757 dd971f6437737517386859d1c18ee849 397 SUPERFAMILY SSF50447 208 304 1.56E-29 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_0757 dd971f6437737517386859d1c18ee849 397 Gene3D G3DSA:2.40.30.10 341 396 1.2E-29 T 31-10-2018 Y89_0757 dd971f6437737517386859d1c18ee849 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_0757 dd971f6437737517386859d1c18ee849 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 3.1E-14 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_4072 920b98bfefbd93ec8ac43db06043541c 173 Gene3D G3DSA:3.40.50.300 3 169 1.7E-55 T 31-10-2018 Y89_4072 920b98bfefbd93ec8ac43db06043541c 173 PIRSF PIRSF006135 1 171 7.0E-52 T 31-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Y89_4072 920b98bfefbd93ec8ac43db06043541c 173 SUPERFAMILY SSF52540 4 169 1.97E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4072 920b98bfefbd93ec8ac43db06043541c 173 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 167 3.8E-59 T 31-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Y89_2774 9f004d8c8c8c077d7f16b8f599325cf4 254 Gene3D G3DSA:3.40.50.1820 6 233 8.5E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2774 9f004d8c8c8c077d7f16b8f599325cf4 254 SUPERFAMILY SSF53474 8 232 2.24E-41 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2774 9f004d8c8c8c077d7f16b8f599325cf4 254 Pfam PF00975 Thioesterase domain 8 230 2.7E-53 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_1601 c4a090a3e276c9090f045ca7addcd625 205 SUPERFAMILY SSF54621 2 176 1.19E-63 T 31-10-2018 IPR036912 Haem-binding HasA superfamily Y89_1601 c4a090a3e276c9090f045ca7addcd625 205 Pfam PF06438 Heme-binding protein A (HasA) 1 205 2.7E-77 T 31-10-2018 IPR010495 Haem-binding HasA Y89_1601 c4a090a3e276c9090f045ca7addcd625 205 PIRSF PIRSF019876 1 205 2.7E-93 T 31-10-2018 IPR010495 Haem-binding HasA Y89_1601 c4a090a3e276c9090f045ca7addcd625 205 Gene3D G3DSA:3.30.1500.10 1 184 1.2E-79 T 31-10-2018 IPR036912 Haem-binding HasA superfamily Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 SUPERFAMILY SSF52540 343 678 9.3E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 35 701 1.2E-221 T 31-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Gene3D G3DSA:3.40.50.300 164 419 9.7E-70 T 31-10-2018 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Pfam PF13538 UvrD-like helicase C-terminal domain 629 676 8.2E-15 T 31-10-2018 IPR027785 UvrD-like helicase C-terminal domain Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 43 699 49.0 T 31-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 SUPERFAMILY SSF52540 37 424 1.67E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Gene3D G3DSA:1.10.10.1020 28 163 8.1E-21 T 31-10-2018 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Gene3D G3DSA:3.40.50.300 429 558 3.4E-20 T 31-10-2018 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Gene3D G3DSA:3.40.50.300 559 690 9.1E-22 T 31-10-2018 Y89_4767 4cff9e66f07abfcf6f63eab189272e59 721 Pfam PF13604 AAA domain 213 380 8.7E-30 T 31-10-2018 Y89_0196 4eb48551409260add400f6c7f1ac40ad 279 Pfam PF00005 ABC transporter 34 172 1.5E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0196 4eb48551409260add400f6c7f1ac40ad 279 Gene3D G3DSA:3.40.50.300 11 254 3.3E-65 T 31-10-2018 Y89_0196 4eb48551409260add400f6c7f1ac40ad 279 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0196 4eb48551409260add400f6c7f1ac40ad 279 SMART SM00382 42 223 2.5E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0196 4eb48551409260add400f6c7f1ac40ad 279 SUPERFAMILY SSF52540 14 253 6.23E-69 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5004 1e4004ebee9b33387b05ecd195666270 141 SUPERFAMILY SSF54593 5 134 2.89E-24 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5004 1e4004ebee9b33387b05ecd195666270 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 124 1.0E-5 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_5004 1e4004ebee9b33387b05ecd195666270 141 Gene3D G3DSA:3.10.180.10 4 141 2.0E-50 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 SUPERFAMILY SSF46785 1 111 9.25E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.2E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.2E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.2E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 Gene3D G3DSA:3.40.190.290 92 298 4.7E-27 T 31-10-2018 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 Pfam PF03466 LysR substrate binding domain 87 292 4.0E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.7E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 SUPERFAMILY SSF53850 89 296 1.52E-28 T 31-10-2018 Y89_5757 745c8dda17cd7bb020c3cb7a76bc9bb0 302 Gene3D G3DSA:1.10.10.10 1 91 2.7E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4717 f519ceebd4874a63f53c79f6d9d9c4e4 343 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 125 248 5.4E-28 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_4717 f519ceebd4874a63f53c79f6d9d9c4e4 343 SMART SM00382 121 253 1.1E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4717 f519ceebd4874a63f53c79f6d9d9c4e4 343 Gene3D G3DSA:3.40.50.300 76 269 1.7E-43 T 31-10-2018 Y89_4717 f519ceebd4874a63f53c79f6d9d9c4e4 343 SUPERFAMILY SSF52540 79 320 1.83E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 214 255 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 Pfam PF12833 Helix-turn-helix domain 183 260 2.3E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 SUPERFAMILY SSF51182 32 186 9.78E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 Gene3D G3DSA:1.10.10.60 161 266 4.0E-17 T 31-10-2018 Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 Gene3D G3DSA:2.60.120.10 7 100 2.8E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 SMART SM00342 177 259 4.6E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4124 fcd87624cecd2fde25c72e0167dc1e2f 268 SUPERFAMILY SSF46689 216 261 1.57E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3572 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:1.25.40.10 464 830 2.3E-26 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3572 c71003476007ca9bb3167de227114ea4 907 SUPERFAMILY SSF52540 30 260 1.03E-10 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3572 c71003476007ca9bb3167de227114ea4 907 ProSitePatterns PS00622 LuxR-type HTH domain signature. 858 885 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 SUPERFAMILY SSF46894 840 904 1.26E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 844 858 4.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 874 886 4.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 858 874 4.1E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 Pfam PF13191 AAA ATPase domain 38 169 4.1E-10 T 31-10-2018 Y89_3572 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:1.10.10.10 834 906 1.9E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3572 c71003476007ca9bb3167de227114ea4 907 Gene3D G3DSA:3.40.50.300 32 182 8.8E-6 T 31-10-2018 Y89_3572 c71003476007ca9bb3167de227114ea4 907 SMART SM00421 841 898 2.7E-23 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3572 c71003476007ca9bb3167de227114ea4 907 Pfam PF00196 Bacterial regulatory proteins, luxR family 845 895 5.3E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 SUPERFAMILY SSF55620 22 136 1.67E-35 T 31-10-2018 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 Gene3D G3DSA:3.30.1130.10 13 137 9.5E-41 T 31-10-2018 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 23 135 1.1E-24 T 31-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 Pfam PF02152 Dihydroneopterin aldolase 25 134 9.3E-32 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 SMART SM00905 25 135 1.2E-50 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_0654 f7f1c81fce928b435ac4c5cce9bfbb9f 138 TIGRFAM TIGR00526 folB_dom: FolB domain 23 136 1.7E-31 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 130 212 2.2E-22 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Pfam PF00128 Alpha amylase, catalytic domain 280 351 6.6E-9 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:2.60.40.10 9 225 7.3E-69 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3123 22833174f22d587057c47ed6634c59ad 732 SMART SM00642 256 624 7.6E-7 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:3.20.20.80 230 627 3.7E-164 T 31-10-2018 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Gene3D G3DSA:2.60.40.1180 629 731 5.0E-33 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta Y89_3123 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF51445 185 621 2.64E-116 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3123 22833174f22d587057c47ed6634c59ad 732 PIRSF PIRSF000463 12 732 6.9E-281 T 31-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Y89_3123 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF81296 21 119 1.54E-15 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_3123 22833174f22d587057c47ed6634c59ad 732 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 106 731 44.598 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Y89_3123 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF51011 630 730 2.64E-29 T 31-10-2018 Y89_3123 22833174f22d587057c47ed6634c59ad 732 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 114 729 4.7E-274 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Y89_3123 22833174f22d587057c47ed6634c59ad 732 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 633 729 3.4E-21 T 31-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Y89_3123 22833174f22d587057c47ed6634c59ad 732 SUPERFAMILY SSF81296 143 200 5.6E-10 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 Gene3D G3DSA:3.40.50.620 1 186 2.8E-61 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 SUPERFAMILY SSF52374 17 178 1.86E-31 T 31-10-2018 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 SUPERFAMILY SSF82114 174 306 1.46E-43 T 31-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 SMART SM00904 183 307 8.6E-60 T 31-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 PIRSF PIRSF004491 1 310 8.2E-104 T 31-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 Pfam PF06574 FAD synthetase 16 167 3.0E-54 T 31-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 Gene3D G3DSA:2.40.30.30 188 309 3.7E-40 T 31-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 305 3.6E-97 T 31-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Y89_5168 d53e395b18bab12071633bb9ab2eed5b 312 Pfam PF01687 Riboflavin kinase 184 305 4.2E-36 T 31-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 SUPERFAMILY SSF52540 3 187 3.59E-7 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 SMART SM00421 793 850 5.9E-27 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 Gene3D G3DSA:1.25.40.10 417 774 2.2E-24 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 Gene3D G3DSA:3.40.50.300 3 136 9.5E-6 T 31-10-2018 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 Pfam PF00196 Bacterial regulatory proteins, luxR family 796 850 3.5E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 Gene3D G3DSA:1.10.10.10 786 856 6.9E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 810 826 4.2E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 826 838 4.2E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 796 810 4.2E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 SUPERFAMILY SSF46894 789 855 7.48E-21 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3573 bed6136ffc3818dd44645769d024f4c1 856 ProSitePatterns PS00622 LuxR-type HTH domain signature. 810 837 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5645 c83dee9ff949caf6c91cd03453db1bdc 234 SUPERFAMILY SSF52218 1 227 2.44E-69 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_5645 c83dee9ff949caf6c91cd03453db1bdc 234 Gene3D G3DSA:3.40.50.360 1 232 6.9E-78 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_5645 c83dee9ff949caf6c91cd03453db1bdc 234 Pfam PF02525 Flavodoxin-like fold 1 207 2.8E-54 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_2692 a8d0c5c42ed5cb688441ecb72f6edd87 408 Pfam PF07690 Major Facilitator Superfamily 40 357 1.2E-27 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2692 a8d0c5c42ed5cb688441ecb72f6edd87 408 SUPERFAMILY SSF103473 21 401 5.75E-46 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2692 a8d0c5c42ed5cb688441ecb72f6edd87 408 Gene3D G3DSA:1.20.1250.20 18 204 1.4E-11 T 31-10-2018 Y89_2692 a8d0c5c42ed5cb688441ecb72f6edd87 408 Gene3D G3DSA:1.20.1250.20 208 397 5.0E-22 T 31-10-2018 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 SUPERFAMILY SSF53474 5 294 1.91E-49 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 Gene3D G3DSA:3.40.50.1820 1 292 2.5E-67 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 PRINTS PR00412 Epoxide hydrolase signature 270 292 2.2E-16 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 PRINTS PR00412 Epoxide hydrolase signature 236 252 2.2E-16 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 PRINTS PR00412 Epoxide hydrolase signature 31 49 2.2E-16 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 PRINTS PR00412 Epoxide hydrolase signature 51 66 2.2E-16 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 PRINTS PR00412 Epoxide hydrolase signature 99 112 2.2E-16 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1030 0e8d091fe4cedcbb165eab2332d9ff23 296 Pfam PF00561 alpha/beta hydrolase fold 28 278 1.2E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2652 30721f750124d7f0e90f66ac9e21b397 449 SMART SM00195 302 435 3.7E-6 T 31-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 Y89_2652 30721f750124d7f0e90f66ac9e21b397 449 Gene3D G3DSA:3.90.190.10 290 433 3.4E-18 T 31-10-2018 IPR029021 Protein-tyrosine phosphatase-like Y89_2652 30721f750124d7f0e90f66ac9e21b397 449 SUPERFAMILY SSF52799 296 429 4.49E-19 T 31-10-2018 IPR029021 Protein-tyrosine phosphatase-like Y89_2652 30721f750124d7f0e90f66ac9e21b397 449 Pfam PF00782 Dual specificity phosphatase, catalytic domain 359 430 1.7E-8 T 31-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 SMART SM00861 599 792 1.3E-56 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:1.10.287.1150 88 170 1.1E-26 T 31-10-2018 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 SUPERFAMILY SSF52518 126 550 1.06E-87 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 PIRSF PIRSF000157 1 943 0.0 T 31-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 941 0.0 T 31-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.4E-17 T 31-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:3.40.50.11610 729 938 7.0E-171 T 31-10-2018 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF02779 Transketolase, pyrimidine binding domain 599 793 1.5E-65 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:3.40.50.12470 562 808 7.0E-171 T 31-10-2018 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 797 941 8.2E-55 T 31-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Gene3D G3DSA:3.40.50.970 172 535 4.5E-149 T 31-10-2018 Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 SUPERFAMILY SSF52518 582 799 5.72E-52 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3750 43860ba9ddd2b302e4b10398fd2c109f 943 Pfam PF00676 Dehydrogenase E1 component 220 525 4.3E-55 T 31-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 SUPERFAMILY SSF53850 93 295 1.01E-31 T 31-10-2018 Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 Gene3D G3DSA:1.10.10.10 1 86 5.9E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 Pfam PF03466 LysR substrate binding domain 104 295 1.8E-15 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 Gene3D G3DSA:3.40.190.10 168 267 2.3E-48 T 31-10-2018 Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 Gene3D G3DSA:3.40.190.10 93 291 2.3E-48 T 31-10-2018 Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 SUPERFAMILY SSF46785 2 83 1.36E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2187 4a4a902115ed608500fc2c9a3a83e41d 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.1E-14 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 1.2E-58 T 31-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 SUPERFAMILY SSF54292 4 106 1.39E-34 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 31-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 42 52 7.6E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 60 74 7.6E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 PRINTS PR00355 Adrenodoxin signature 83 91 7.6E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 5.4E-17 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_1217 0d83393a0151cdca5df4206f9281d85d 112 Gene3D G3DSA:3.10.20.30 1 111 2.1E-36 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:4.10.950.10 197 273 1.8E-35 T 31-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 1.7E-128 T 31-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 PIRSF PIRSF002158 12 273 1.6E-100 T 31-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 8.4E-56 T 31-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 SUPERFAMILY SSF50249 2 125 1.27E-47 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.1E-32 T 31-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 31-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 SMART SM01383 42 118 1.3E-43 T 31-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:2.30.30.30 118 196 2.5E-30 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Gene3D G3DSA:2.40.50.140 1 114 6.7E-49 T 31-10-2018 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.774 T 31-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 SMART SM01382 124 252 1.5E-90 T 31-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Y89_0762 3a8202fe29993bc194e7292d6f7d4d8e 273 SUPERFAMILY SSF50104 127 272 1.32E-60 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 Pfam PF00108 Thiolase, N-terminal domain 6 248 1.2E-59 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 Gene3D G3DSA:3.40.47.10 140 372 2.0E-132 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 SUPERFAMILY SSF53901 257 376 8.2E-43 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 Gene3D G3DSA:3.40.47.10 7 261 2.0E-132 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 88 106 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 376 8.4E-124 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 SUPERFAMILY SSF53901 5 253 6.26E-67 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 ProSitePatterns PS00737 Thiolases signature 2. 324 340 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 PIRSF PIRSF000429 1 379 3.7E-117 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2081 e785549f8716ea6529ec04f4a90e0e59 379 Pfam PF02803 Thiolase, C-terminal domain 257 376 6.6E-45 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 Pfam PF01230 HIT domain 18 115 4.2E-27 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 SUPERFAMILY SSF54197 6 142 1.32E-39 T 31-10-2018 IPR036265 HIT-like superfamily Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 Gene3D G3DSA:3.30.428.10 5 143 3.5E-40 T 31-10-2018 IPR036265 HIT-like superfamily Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 101 111 5.6E-18 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 12 28 5.6E-18 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_1717 2ecc86dc94577ffc865d48d3c2dc42c0 145 PRINTS PR00332 Histidine triad family signature 33 51 5.6E-18 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_5342 47c6aff6252669f9073a300921ffc100 266 Gene3D G3DSA:3.20.20.60 2 266 8.6E-105 T 31-10-2018 Y89_5342 47c6aff6252669f9073a300921ffc100 266 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 4 264 6.8E-100 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_5342 47c6aff6252669f9073a300921ffc100 266 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 1.2E-105 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_5342 47c6aff6252669f9073a300921ffc100 266 PIRSF PIRSF000388 2 266 1.5E-97 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_5342 47c6aff6252669f9073a300921ffc100 266 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 41.269 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_5342 47c6aff6252669f9073a300921ffc100 266 SUPERFAMILY SSF51621 4 264 1.94E-101 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_4840 7f75af223a6b8a1bc80ba226f649bd22 388 Pfam PF07690 Major Facilitator Superfamily 8 341 1.7E-38 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4840 7f75af223a6b8a1bc80ba226f649bd22 388 SUPERFAMILY SSF103473 5 375 4.71E-56 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4840 7f75af223a6b8a1bc80ba226f649bd22 388 Gene3D G3DSA:1.20.1250.20 2 374 3.0E-47 T 31-10-2018 Y89_6100 52604dca305dbac75b774167aaccccc8 446 Pfam PF03471 Transporter associated domain 372 444 8.9E-17 T 31-10-2018 IPR005170 Transporter-associated domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 Gene3D G3DSA:3.30.465.10 366 445 1.0E-14 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_6100 52604dca305dbac75b774167aaccccc8 446 SMART SM01091 368 446 2.7E-16 T 31-10-2018 IPR005170 Transporter-associated domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 SMART SM00116 305 353 0.1 T 31-10-2018 IPR000644 CBS domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 SMART SM00116 239 288 1.6E-7 T 31-10-2018 IPR000644 CBS domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 Pfam PF01595 Domain of unknown function DUF21 21 209 8.8E-51 T 31-10-2018 IPR002550 CNNM, transmembrane domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 SUPERFAMILY SSF56176 367 445 7.09E-15 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_6100 52604dca305dbac75b774167aaccccc8 446 Pfam PF00571 CBS domain 237 288 9.1E-8 T 31-10-2018 IPR000644 CBS domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 Pfam PF00571 CBS domain 304 353 7.8E-6 T 31-10-2018 IPR000644 CBS domain Y89_6100 52604dca305dbac75b774167aaccccc8 446 SUPERFAMILY SSF54631 224 363 2.4E-27 T 31-10-2018 Y89_6100 52604dca305dbac75b774167aaccccc8 446 Gene3D G3DSA:3.10.580.10 213 361 3.5E-34 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:2.40.50.100 48 81 4.0E-13 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Pfam PF13437 HlyD family secretion protein 216 319 2.2E-13 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:1.10.287.470 187 215 1.9E-15 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Pfam PF13533 Biotin-lipoyl like 50 96 2.2E-13 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 117 174 1.96E-6 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 43 123 3.4E-9 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:1.10.287.470 118 179 4.0E-9 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:2.40.50.100 216 250 1.9E-15 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:2.40.30.170 251 301 1.9E-15 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 SUPERFAMILY SSF111369 186 284 2.35E-6 T 31-10-2018 Y89_5920 42ee25905ab4a7d6ed26d28226e1e96e 357 Gene3D G3DSA:1.10.287.470 82 113 4.0E-13 T 31-10-2018 Y89_0728 902d81795222cec74c793babab6bf0b7 215 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 14 215 30.303 T 31-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Y89_0728 902d81795222cec74c793babab6bf0b7 215 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 212 9.2E-39 T 31-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Y89_0728 902d81795222cec74c793babab6bf0b7 215 SUPERFAMILY SSF47240 51 183 8.57E-18 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_0728 902d81795222cec74c793babab6bf0b7 215 Gene3D G3DSA:1.20.1260.10 46 200 2.2E-9 T 31-10-2018 IPR012347 Ferritin-like Y89_5486 088e8ee9c8a606b15ed5bedbb7301775 119 Pfam PF08765 Mor transcription activator family 11 110 1.3E-15 T 31-10-2018 IPR014875 Mor transcription activator Y89_5486 088e8ee9c8a606b15ed5bedbb7301775 119 SUPERFAMILY SSF46689 14 106 1.52E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5486 088e8ee9c8a606b15ed5bedbb7301775 119 Gene3D G3DSA:1.10.10.60 63 115 1.6E-7 T 31-10-2018 Y89_2856 088e8ee9c8a606b15ed5bedbb7301775 119 Pfam PF08765 Mor transcription activator family 11 110 1.3E-15 T 31-10-2018 IPR014875 Mor transcription activator Y89_2856 088e8ee9c8a606b15ed5bedbb7301775 119 SUPERFAMILY SSF46689 14 106 1.52E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2856 088e8ee9c8a606b15ed5bedbb7301775 119 Gene3D G3DSA:1.10.10.60 63 115 1.6E-7 T 31-10-2018 Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 Pfam PF00149 Calcineurin-like phosphoesterase 2 150 1.4E-13 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 SUPERFAMILY SSF56300 1 257 8.55E-58 T 31-10-2018 Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 Gene3D G3DSA:3.60.21.10 1 279 2.1E-79 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 272 49.983 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 259 1.7E-96 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y89_0662 4a1ffbb2d222ae871208faf3d903cedb 283 PIRSF PIRSF000903 1 276 5.8E-121 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Y89_1795 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF46689 199 249 1.7E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1795 840601bd7511eee4a915da504fc191f0 254 Gene3D G3DSA:2.60.120.10 11 75 1.5E-7 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1795 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF46689 152 196 9.68E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1795 840601bd7511eee4a915da504fc191f0 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 230 5.1E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1795 840601bd7511eee4a915da504fc191f0 254 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 246 5.1E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1795 840601bd7511eee4a915da504fc191f0 254 SUPERFAMILY SSF51182 17 130 1.06E-6 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1795 840601bd7511eee4a915da504fc191f0 254 Pfam PF12833 Helix-turn-helix domain 169 247 1.0E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1795 840601bd7511eee4a915da504fc191f0 254 Gene3D G3DSA:1.10.10.60 148 253 8.7E-29 T 31-10-2018 Y89_1795 840601bd7511eee4a915da504fc191f0 254 SMART SM00342 163 246 1.5E-28 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2121 624ee3c51d8fb9ae86d7c04c4a5cd939 114 Pfam PF14346 Domain of unknown function (DUF4398) 8 107 1.3E-23 T 31-10-2018 IPR025511 Domain of unknown function DUF4398 Y89_2121 624ee3c51d8fb9ae86d7c04c4a5cd939 114 Gene3D G3DSA:1.20.1270.390 17 114 1.4E-32 T 31-10-2018 Y89_5547 c03b58cfba07ef486f9beed267f57291 270 SMART SM00871 120 270 1.4E-33 T 31-10-2018 IPR010499 Bacterial transcription activator, effector binding Y89_5547 c03b58cfba07ef486f9beed267f57291 270 SUPERFAMILY SSF55136 120 269 1.05E-32 T 31-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Y89_5547 c03b58cfba07ef486f9beed267f57291 270 Gene3D G3DSA:1.10.1660.10 1 124 3.5E-28 T 31-10-2018 Y89_5547 c03b58cfba07ef486f9beed267f57291 270 SMART SM00422 2 72 4.8E-20 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5547 c03b58cfba07ef486f9beed267f57291 270 Pfam PF14526 Integron-associated effector binding protein 123 269 1.4E-37 T 31-10-2018 IPR029441 Integron-associated effector binding protein Y89_5547 c03b58cfba07ef486f9beed267f57291 270 SUPERFAMILY SSF46955 2 108 1.31E-25 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5547 c03b58cfba07ef486f9beed267f57291 270 Pfam PF13411 MerR HTH family regulatory protein 3 68 9.3E-16 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5547 c03b58cfba07ef486f9beed267f57291 270 Gene3D G3DSA:3.20.80.10 125 270 2.6E-37 T 31-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Y89_4094 cddef330a45c18554a1005396c00a2ca 214 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 212 4.1E-16 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4094 cddef330a45c18554a1005396c00a2ca 214 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 107 1.6E-14 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4094 cddef330a45c18554a1005396c00a2ca 214 Gene3D G3DSA:1.10.3720.10 7 214 1.1E-41 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4094 cddef330a45c18554a1005396c00a2ca 214 SUPERFAMILY SSF161098 14 198 2.09E-37 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4942 525c346d72a8e5b47a4f6e03a350fbe1 215 Pfam PF05494 MlaC protein 33 195 4.5E-43 T 31-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Y89_4942 525c346d72a8e5b47a4f6e03a350fbe1 215 Gene3D G3DSA:3.10.450.710 22 205 5.5E-64 T 31-10-2018 Y89_4942 525c346d72a8e5b47a4f6e03a350fbe1 215 PIRSF PIRSF004649 1 210 2.7E-59 T 31-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Y89_1446 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 PIRSF PIRSF006181 1 156 1.1E-53 T 31-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Y89_1446 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 SUPERFAMILY SSF55826 2 153 7.19E-41 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_1446 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 Gene3D G3DSA:3.90.960.10 1 156 2.8E-55 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_1446 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 Pfam PF04073 Aminoacyl-tRNA editing domain 32 142 4.9E-26 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_1446 0f43629194d0b9d2cfbe15d9d2c8d3c3 156 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 153 1.7E-54 T 31-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Y89_3090 300e30c9058240183c33abdc7fb4b551 184 SUPERFAMILY SSF52096 3 170 1.33E-29 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3090 300e30c9058240183c33abdc7fb4b551 184 Gene3D G3DSA:3.90.226.10 1 173 2.8E-30 T 31-10-2018 Y89_3090 300e30c9058240183c33abdc7fb4b551 184 Pfam PF00574 Clp protease 2 168 7.6E-15 T 31-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y89_0348 c81233783c5b5911862e7ab9651290b5 658 SMART SM00869 377 647 1.5E-37 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_0348 c81233783c5b5911862e7ab9651290b5 658 Gene3D G3DSA:2.40.128.130 341 658 1.2E-45 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_0348 c81233783c5b5911862e7ab9651290b5 658 SUPERFAMILY SSF103515 348 658 1.44E-36 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_0348 c81233783c5b5911862e7ab9651290b5 658 Pfam PF04389 Peptidase family M28 93 297 7.5E-28 T 31-10-2018 IPR007484 Peptidase M28 Y89_0348 c81233783c5b5911862e7ab9651290b5 658 SUPERFAMILY SSF53187 49 297 5.43E-41 T 31-10-2018 Y89_0348 c81233783c5b5911862e7ab9651290b5 658 Pfam PF03797 Autotransporter beta-domain 391 637 1.4E-41 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_0348 c81233783c5b5911862e7ab9651290b5 658 Gene3D G3DSA:3.40.630.10 42 326 3.5E-40 T 31-10-2018 Y89_0348 c81233783c5b5911862e7ab9651290b5 658 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 490 658 1.6E-14 T 31-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 Y89_3745 1a012eb5beea2b588738d0daca826245 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 9.2E-165 T 31-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y89_3745 1a012eb5beea2b588738d0daca826245 437 Pfam PF05525 Branched-chain amino acid transport protein 8 427 9.2E-161 T 31-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 SUPERFAMILY SSF51905 19 229 9.39E-37 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 22 41 3.3E-5 T 31-10-2018 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 181 199 3.3E-5 T 31-10-2018 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 Gene3D G3DSA:3.50.50.60 15 297 6.1E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 Gene3D G3DSA:3.50.50.60 320 428 3.7E-13 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 SUPERFAMILY SSF51905 182 418 2.11E-7 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 23 211 1.9E-27 T 31-10-2018 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 21 43 2.6E-9 T 31-10-2018 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 181 206 2.6E-9 T 31-10-2018 Y89_6131 a77679f1bba75e6d525108b3bd69d010 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 2.6E-9 T 31-10-2018 Y89_6240 3a65a7d41efec3c07f35217234d4d174 269 SUPERFAMILY SSF52540 4 214 2.5E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6240 3a65a7d41efec3c07f35217234d4d174 269 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6240 3a65a7d41efec3c07f35217234d4d174 269 SMART SM00382 30 199 2.8E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6240 3a65a7d41efec3c07f35217234d4d174 269 Gene3D G3DSA:3.40.50.300 1 228 4.9E-55 T 31-10-2018 Y89_6240 3a65a7d41efec3c07f35217234d4d174 269 Pfam PF00005 ABC transporter 21 149 1.1E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 Pfam PF17384 RimP C-terminal SH3 domain 86 151 1.6E-20 T 31-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 25.859 T 31-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 Gene3D G3DSA:3.30.300.70 1 80 3.4E-28 T 31-10-2018 IPR035956 RimP, N-terminal domain superfamily Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 SUPERFAMILY SSF75420 3 83 4.18E-27 T 31-10-2018 IPR035956 RimP, N-terminal domain superfamily Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 SUPERFAMILY SSF74942 84 151 1.02E-17 T 31-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily Y89_5359 5ee64c2c3e08d22c2eb9b9754d891288 152 Pfam PF02576 RimP N-terminal domain 11 83 1.8E-31 T 31-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Y89_4267 b30e976e7625f59311f2643f70e5716c 439 Gene3D G3DSA:1.20.1330.10 283 426 3.2E-12 T 31-10-2018 Y89_4267 b30e976e7625f59311f2643f70e5716c 439 Pfam PF00700 Bacterial flagellin C-terminal helical region 356 438 2.0E-6 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y89_4267 b30e976e7625f59311f2643f70e5716c 439 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 6.9E-21 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y89_4267 b30e976e7625f59311f2643f70e5716c 439 SUPERFAMILY SSF64518 1 438 3.14E-83 T 31-10-2018 Y89_4267 b30e976e7625f59311f2643f70e5716c 439 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 438 4.9E-136 T 31-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Y89_4267 b30e976e7625f59311f2643f70e5716c 439 Gene3D G3DSA:1.20.1330.10 40 219 7.5E-52 T 31-10-2018 Y89_4580 93b8568b92c492a9e085e4e853bcf1ea 134 Gene3D G3DSA:2.60.40.2020 38 134 9.4E-29 T 31-10-2018 IPR036331 Chagasin-like superfamily Y89_4580 93b8568b92c492a9e085e4e853bcf1ea 134 Pfam PF09394 Chagasin family peptidase inhibitor I42 41 130 4.3E-21 T 31-10-2018 IPR018990 Proteinase inhibitor I42, chagasin Y89_4580 93b8568b92c492a9e085e4e853bcf1ea 134 SUPERFAMILY SSF141066 30 133 1.09E-26 T 31-10-2018 IPR036331 Chagasin-like superfamily Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 Gene3D G3DSA:1.10.10.10 6 94 1.0E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.1E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 Gene3D G3DSA:3.40.190.10 162 255 1.8E-47 T 31-10-2018 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 Gene3D G3DSA:3.40.190.10 102 282 1.8E-47 T 31-10-2018 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 SUPERFAMILY SSF53850 92 291 3.57E-43 T 31-10-2018 Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 SUPERFAMILY SSF46785 7 113 4.61E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1179 93a35afa08d2c26b49d37b1c7d66e002 298 Pfam PF03466 LysR substrate binding domain 90 286 1.7E-39 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 SUPERFAMILY SSF75304 3 481 1.83E-171 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 Gene3D G3DSA:3.90.1300.10 1 484 6.9E-224 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 Pfam PF01425 Amidase 23 464 4.0E-161 T 31-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 ProSitePatterns PS00571 Amidases signature. 150 181 - T 31-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 473 8.6E-179 T 31-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4973 699077b6e631219d073b9ffdcd9876c8 484 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 10 475 94.316 T 31-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 Gene3D G3DSA:3.40.190.10 120 211 1.0E-63 T 31-10-2018 Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 Gene3D G3DSA:3.40.190.10 24 246 1.0E-63 T 31-10-2018 Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 SUPERFAMILY SSF53850 1 252 9.31E-69 T 31-10-2018 Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 251 6.7E-60 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 SMART SM00062 32 253 5.5E-63 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3075 1c906324b22d9eebebca43e3ac7ad353 268 SMART SM00079 32 252 0.0085 T 31-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Y89_6070 61ecc2e2d71d6dc55c508a0e12af242d 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 253 3.0E-58 T 31-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y89_6070 61ecc2e2d71d6dc55c508a0e12af242d 259 SUPERFAMILY SSF56219 1 254 2.49E-53 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_6070 61ecc2e2d71d6dc55c508a0e12af242d 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 233 2.2E-11 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_6070 61ecc2e2d71d6dc55c508a0e12af242d 259 Gene3D G3DSA:3.60.10.10 1 259 4.2E-66 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_3766 803cc07374402cd45f28d5aabf95a565 293 SUPERFAMILY SSF46785 3 99 1.43E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3766 803cc07374402cd45f28d5aabf95a565 293 Gene3D G3DSA:1.10.10.10 1 87 1.0E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3766 803cc07374402cd45f28d5aabf95a565 293 SUPERFAMILY SSF53850 92 289 3.09E-36 T 31-10-2018 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 4.6E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 Gene3D G3DSA:3.40.190.290 93 289 1.0E-35 T 31-10-2018 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 Pfam PF03466 LysR substrate binding domain 91 288 7.8E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3766 803cc07374402cd45f28d5aabf95a565 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.5E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.5E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.5E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3766 803cc07374402cd45f28d5aabf95a565 293 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 7 285 4.3E-121 T 31-10-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type Y89_3899 06eaa8e12853c0913c1ecfbd58f78c69 195 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 181 2.3E-32 T 31-10-2018 IPR011978 Uncharacterised protein family UPF0149 Y89_3899 06eaa8e12853c0913c1ecfbd58f78c69 195 Gene3D G3DSA:1.20.120.740 5 141 9.9E-6 T 31-10-2018 Y89_3899 06eaa8e12853c0913c1ecfbd58f78c69 195 SUPERFAMILY SSF101327 9 181 2.48E-19 T 31-10-2018 IPR036255 YgfB-like superfamily Y89_3899 06eaa8e12853c0913c1ecfbd58f78c69 195 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 7 179 8.6E-44 T 31-10-2018 IPR011978 Uncharacterised protein family UPF0149 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00149 Fumarate lyase superfamily signature 277 293 8.6E-24 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 8.6E-24 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 8.6E-24 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 8.6E-24 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1510 05ae3395853fed59e9868d7840f9545e 477 Pfam PF10397 Adenylosuccinate lyase C-terminus 367 442 1.4E-16 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 Pfam PF00206 Lyase 17 298 1.8E-41 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_1510 05ae3395853fed59e9868d7840f9545e 477 ProSitePatterns PS00163 Fumarate lyases signature. 277 286 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 SUPERFAMILY SSF48557 11 444 1.21E-115 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 Gene3D G3DSA:1.20.200.10 15 442 2.7E-146 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 15 444 9.0E-99 T 31-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00145 Argininosuccinate lyase family signature 277 293 2.4E-10 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 2.4E-10 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00145 Argininosuccinate lyase family signature 101 123 2.4E-10 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 PRINTS PR00145 Argininosuccinate lyase family signature 142 162 2.4E-10 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 Gene3D G3DSA:1.10.275.60 25 230 2.7E-146 T 31-10-2018 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 SMART SM00998 366 445 2.4E-25 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_1510 05ae3395853fed59e9868d7840f9545e 477 Gene3D G3DSA:1.10.40.30 364 433 2.7E-146 T 31-10-2018 Y89_3197 62081b9cd803b9f3906abbc42ca4e9a2 634 SUPERFAMILY SSF46626 356 421 7.09E-5 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3197 62081b9cd803b9f3906abbc42ca4e9a2 634 SUPERFAMILY SSF46626 354 634 3.83E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 SUPERFAMILY SSF46689 204 254 8.96E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 257 299 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 SUPERFAMILY SSF46689 256 301 4.21E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 Pfam PF06719 AraC-type transcriptional regulator N-terminus 41 191 1.1E-50 T 31-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 SMART SM00342 220 303 6.5E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 Pfam PF12833 Helix-turn-helix domain 226 300 1.1E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3276 3bc7ed4c1056ced662c659d5701e5e1f 310 Gene3D G3DSA:1.10.10.60 203 308 9.0E-28 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 Gene3D G3DSA:1.10.3210.10 311 501 2.7E-63 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 Gene3D G3DSA:3.30.420.150 117 296 4.8E-89 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 SUPERFAMILY SSF53067 12 134 1.07E-34 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 PIRSF PIRSF001267 2 501 1.4E-199 T 31-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 Gene3D G3DSA:3.30.420.40 13 304 4.8E-89 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 SUPERFAMILY SSF53067 138 312 1.04E-44 T 31-10-2018 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 12 307 3.2E-102 T 31-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 Pfam PF02541 Ppx/GppA phosphatase family 32 310 6.0E-77 T 31-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Y89_5929 1f07650229cdfaa0e6830621d1df8abc 501 SUPERFAMILY SSF109604 314 500 3.37E-50 T 31-10-2018 Y89_5976 4866becbc33a9acb30b96cbee01fd8ef 442 SUPERFAMILY SSF111352 29 421 1.96E-128 T 31-10-2018 Y89_5976 4866becbc33a9acb30b96cbee01fd8ef 442 TIGRFAM TIGR00836 amt: ammonium transporter 33 440 1.2E-143 T 31-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Y89_5976 4866becbc33a9acb30b96cbee01fd8ef 442 ProSitePatterns PS01219 Ammonium transporters signature. 198 223 - T 31-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Y89_5976 4866becbc33a9acb30b96cbee01fd8ef 442 Gene3D G3DSA:1.10.3430.10 19 442 5.7E-141 T 31-10-2018 IPR029020 Ammonium/urea transporter Y89_5976 4866becbc33a9acb30b96cbee01fd8ef 442 Pfam PF00909 Ammonium Transporter Family 35 440 1.3E-117 T 31-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y89_4128 6e7d6c5dbf4751d73cf8a870660e4377 208 Gene3D G3DSA:3.40.50.360 1 195 8.7E-51 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4128 6e7d6c5dbf4751d73cf8a870660e4377 208 SUPERFAMILY SSF52218 1 192 1.41E-50 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4128 6e7d6c5dbf4751d73cf8a870660e4377 208 Pfam PF02525 Flavodoxin-like fold 1 184 1.2E-43 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_2847 bc9cc31340627ef563a45376202fe2f9 384 Pfam PF03969 AFG1-like ATPase 11 293 6.1E-82 T 31-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y89_2847 bc9cc31340627ef563a45376202fe2f9 384 Pfam PF03969 AFG1-like ATPase 316 376 6.2E-14 T 31-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y89_2847 bc9cc31340627ef563a45376202fe2f9 384 Gene3D G3DSA:3.40.50.300 18 185 3.5E-18 T 31-10-2018 Y89_2847 bc9cc31340627ef563a45376202fe2f9 384 SUPERFAMILY SSF52540 47 179 1.13E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 47.077 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 7.5E-122 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 4.1E-109 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 SUPERFAMILY SSF54211 3 124 6.98E-43 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 SUPERFAMILY SSF54211 134 277 1.82E-52 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 Gene3D G3DSA:3.30.230.20 1 127 2.5E-51 T 31-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Y89_4895 4c5afba7d803b5dbd2d90ff6fdb78903 303 Gene3D G3DSA:3.30.1700.10 128 299 4.3E-71 T 31-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 SMART SM00062 28 241 0.0017 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 SUPERFAMILY SSF53850 33 256 8.65E-43 T 31-10-2018 Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 309 1.6E-65 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 Pfam PF09084 NMT1/THI5 like 66 242 8.6E-17 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 Gene3D G3DSA:3.40.190.10 30 300 1.1E-80 T 31-10-2018 Y89_2489 15acffe4cdb39a1b10578c0daacc2b95 314 Gene3D G3DSA:3.40.190.10 105 204 1.1E-80 T 31-10-2018 Y89_4245 7535d6219181a938e6320b36af334ae2 259 Gene3D G3DSA:2.60.120.10 19 118 4.8E-7 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4245 7535d6219181a938e6320b36af334ae2 259 SUPERFAMILY SSF51182 16 182 3.11E-13 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4245 7535d6219181a938e6320b36af334ae2 259 SUPERFAMILY SSF46689 210 255 1.51E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4245 7535d6219181a938e6320b36af334ae2 259 SMART SM00342 173 255 6.5E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4245 7535d6219181a938e6320b36af334ae2 259 Pfam PF02311 AraC-like ligand binding domain 19 143 2.7E-18 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_4245 7535d6219181a938e6320b36af334ae2 259 Pfam PF12833 Helix-turn-helix domain 181 256 1.3E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4245 7535d6219181a938e6320b36af334ae2 259 Gene3D G3DSA:1.10.10.60 157 258 4.7E-20 T 31-10-2018 Y89_4245 7535d6219181a938e6320b36af334ae2 259 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1389 9c609c5ee078836afc904ffc096c6562 542 SUPERFAMILY SSF52317 287 538 2.22E-88 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1389 9c609c5ee078836afc904ffc096c6562 542 Pfam PF06418 CTP synthase N-terminus 3 265 9.8E-125 T 31-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y89_1389 9c609c5ee078836afc904ffc096c6562 542 Pfam PF00117 Glutamine amidotransferase class-I 300 533 9.3E-59 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_1389 9c609c5ee078836afc904ffc096c6562 542 Gene3D G3DSA:3.40.50.300 1 284 2.1E-130 T 31-10-2018 Y89_1389 9c609c5ee078836afc904ffc096c6562 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 51.562 T 31-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y89_1389 9c609c5ee078836afc904ffc096c6562 542 Gene3D G3DSA:3.40.50.880 285 542 1.2E-104 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1389 9c609c5ee078836afc904ffc096c6562 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 5.5E-253 T 31-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Y89_1389 9c609c5ee078836afc904ffc096c6562 542 SUPERFAMILY SSF52540 1 267 1.52E-121 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4537 417bc12dd08061ad107d4e70e2a4d5a0 141 ProDom PD140749 ORF PHAGE PA0727 12 140 1.0E-58 T 31-10-2018 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 Pfam PF12833 Helix-turn-helix domain 219 298 1.4E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 Gene3D G3DSA:2.60.120.10 21 91 3.1E-6 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF46689 196 245 9.43E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 242 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 Pfam PF02311 AraC-like ligand binding domain 17 173 3.7E-37 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 SMART SM00342 213 296 5.6E-31 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 250 292 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 296 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 280 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF51182 27 81 9.49E-8 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 Gene3D G3DSA:1.10.10.60 195 302 3.3E-28 T 31-10-2018 Y89_0585 bb4823abfa8c211bcda4d3202a98ac80 303 SUPERFAMILY SSF46689 249 298 7.62E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.4E-29 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 Gene3D G3DSA:4.10.520.10 2 39 1.9E-7 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 Gene3D G3DSA:4.10.520.10 40 91 6.2E-27 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 SMART SM00411 1 91 7.5E-45 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.813 T 31-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Y89_1855 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 6.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 6.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 6.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 SUPERFAMILY SSF47729 1 92 3.68E-31 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y89_1855 582a77b41052061335656296b4908213 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 94 2.1E-54 T 31-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 31-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 Gene3D G3DSA:3.30.1140.32 108 208 8.5E-47 T 31-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 40.232 T 31-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 SUPERFAMILY SSF54821 108 206 9.94E-43 T 31-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 Gene3D G3DSA:3.30.300.20 18 107 1.3E-29 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 SUPERFAMILY SSF54814 2 106 7.85E-39 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.1E-99 T 31-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 SMART SM00322 60 125 3.0E-9 T 31-10-2018 IPR004087 K Homology domain GO:0003676 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 3.2E-42 T 31-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0765 397f374ffa27cc6b634f1a88a3a5d2aa 228 Pfam PF07650 KH domain 38 111 4.2E-22 T 31-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0433 4ee9ba721d1293396a13e430b5b1023b 178 SUPERFAMILY SSF50341 33 170 3.79E-28 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_0433 4ee9ba721d1293396a13e430b5b1023b 178 Pfam PF01584 CheW-like domain 38 169 7.0E-27 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0433 4ee9ba721d1293396a13e430b5b1023b 178 Gene3D G3DSA:2.30.30.40 39 157 2.8E-21 T 31-10-2018 Y89_0433 4ee9ba721d1293396a13e430b5b1023b 178 Gene3D G3DSA:2.40.50.180 55 121 2.8E-21 T 31-10-2018 Y89_0433 4ee9ba721d1293396a13e430b5b1023b 178 SMART SM00260 32 168 2.1E-29 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.70.1320 134 325 1.7E-284 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:1.20.1640.10 10 500 1.7E-284 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82693 42 130 7.67E-21 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.70.1440 648 842 1.7E-284 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82714 183 264 1.27E-17 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82866 295 489 2.35E-48 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82714 699 785 3.66E-19 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:1.20.1640.10 501 1000 1.7E-284 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.0E-71 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82866 783 1006 1.31E-43 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.2090.10 178 268 1.7E-284 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.70.1430 555 647 1.7E-284 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82693 137 323 1.02E-19 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 1.1E-269 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.2090.10 698 786 1.7E-284 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 SUPERFAMILY SSF82693 553 650 1.2E-15 T 31-10-2018 Y89_0815 529c7c6fdc7032d780618106d9a0e841 1029 Gene3D G3DSA:3.30.70.1430 40 794 1.7E-284 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82866 301 490 2.22E-36 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:1.20.1640.10 14 507 1.0E-254 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 3.0E-23 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.70.1430 562 660 1.0E-254 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82693 140 325 3.14E-17 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82714 714 800 2.75E-14 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82693 566 659 7.59E-5 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82866 796 1020 3.79E-47 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82693 42 136 1.83E-19 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:1.20.1640.10 508 1012 1.0E-254 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.70.1320 138 328 1.0E-254 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.70.1440 661 860 1.0E-254 T 31-10-2018 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 SUPERFAMILY SSF82714 187 267 1.7E-11 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Pfam PF00873 AcrB/AcrD/AcrF family 7 1013 3.8E-172 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.2090.10 181 270 1.0E-254 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.2090.10 712 800 1.0E-254 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_1350 117af71ef32de8bc80d8307ebcef397f 1025 Gene3D G3DSA:3.30.70.1430 42 808 1.0E-254 T 31-10-2018 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 SMART SM00382 342 512 7.8E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 SMART SM00382 28 227 4.8E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 SUPERFAMILY SSF52540 3 233 2.88E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 SUPERFAMILY SSF52540 306 528 1.24E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Pfam PF12848 ABC transporter 221 299 4.1E-10 T 31-10-2018 IPR032781 ABC-transporter extension domain Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Pfam PF00005 ABC transporter 334 467 7.0E-24 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Gene3D G3DSA:1.10.287.380 562 640 1.9E-22 T 31-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Pfam PF16326 ABC transporter C-terminal domain 571 639 8.4E-19 T 31-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Gene3D G3DSA:3.40.50.300 278 538 2.1E-66 T 31-10-2018 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Pfam PF00005 ABC transporter 19 182 2.6E-22 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2000 45f0b5f72e078f98b41dd7e4f25e8992 640 Gene3D G3DSA:3.40.50.300 3 276 3.6E-64 T 31-10-2018 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 Gene3D G3DSA:1.10.10.60 206 313 2.3E-26 T 31-10-2018 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 294 310 1.8E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 294 1.8E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 306 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 SUPERFAMILY SSF46689 262 312 2.24E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 Pfam PF12833 Helix-turn-helix domain 231 311 1.3E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 Pfam PF14525 AraC-binding-like domain 14 167 2.6E-10 T 31-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y89_0954 2f3c7df90e20f7d93fe3ef7e4db1ff73 316 SMART SM00342 225 310 1.5E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0518 36b1466dcb21ced443c6ecd808498dc9 325 SUPERFAMILY SSF50891 180 304 3.38E-9 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_0518 36b1466dcb21ced443c6ecd808498dc9 325 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 298 1.2E-82 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_0518 36b1466dcb21ced443c6ecd808498dc9 325 Gene3D G3DSA:2.40.100.10 177 324 3.4E-40 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_0518 36b1466dcb21ced443c6ecd808498dc9 325 SMART SM00797 24 312 1.9E-131 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_0518 36b1466dcb21ced443c6ecd808498dc9 325 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 320 1.9E-76 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:3.30.413.10 637 805 8.5E-35 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:1.10.10.1100 422 475 2.5E-9 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:3.50.50.60 110 246 5.7E-93 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 283 3.2E-58 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.8E-13 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 4.8E-13 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.8E-13 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.8E-13 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 471 7.7E-14 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 488 538 3.6E-15 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 SUPERFAMILY SSF55124 522 642 4.91E-25 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 798 5.6E-287 T 31-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00397 Sirohaem Fe-binding site signature 637 655 1.8E-7 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00397 Sirohaem Fe-binding site signature 680 698 1.8E-7 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:3.50.50.60 7 281 5.7E-93 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:3.30.390.30 318 398 2.5E-6 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 SUPERFAMILY SSF51905 2 306 7.07E-46 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 563 625 1.4E-14 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 680 696 - T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 SUPERFAMILY SSF56014 634 800 1.7E-50 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 8.9E-20 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.9E-20 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 8.9E-20 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 8.9E-20 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 8.9E-20 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 772 3.4E-27 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 Gene3D G3DSA:3.90.480.10 571 636 2.3E-5 T 31-10-2018 Y89_3551 b72f9f8ce8c84c5ede2bf8eeeafe5689 816 PIRSF PIRSF037149 1 815 0.0 T 31-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.661 T 31-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 Gene3D G3DSA:1.10.10.2720 73 143 1.0E-25 T 31-10-2018 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 31-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 SUPERFAMILY SSF46906 68 141 9.68E-24 T 31-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Y89_0748 289c47e462a79e6ce33182b3cb634261 143 SMART SM00649 9 141 5.8E-83 T 31-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 4.6E-23 T 31-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 SUPERFAMILY SSF54747 3 72 7.46E-30 T 31-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Y89_0748 289c47e462a79e6ce33182b3cb634261 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 72 5.0E-16 T 31-10-2018 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.6E-64 T 31-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0748 289c47e462a79e6ce33182b3cb634261 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 3.3E-29 T 31-10-2018 IPR020784 Ribosomal protein L11, N-terminal Y89_0748 289c47e462a79e6ce33182b3cb634261 143 Gene3D G3DSA:3.30.1550.10 2 72 4.0E-34 T 31-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Y89_5683 2240c08609251a5e477a6d7770200e76 355 SUPERFAMILY SSF53756 1 348 3.92E-84 T 31-10-2018 Y89_5683 2240c08609251a5e477a6d7770200e76 355 Gene3D G3DSA:3.40.50.2000 168 309 3.1E-48 T 31-10-2018 Y89_5683 2240c08609251a5e477a6d7770200e76 355 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 296 5.9E-114 T 31-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 Y89_5683 2240c08609251a5e477a6d7770200e76 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 314 5.3E-85 T 31-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 Y89_5683 2240c08609251a5e477a6d7770200e76 355 Gene3D G3DSA:3.40.50.2000 1 163 2.9E-59 T 31-10-2018 Y89_5083 c0c441fb41d9bbdd56e173193a5b4ccf 96 Pfam PF01381 Helix-turn-helix 47 90 3.6E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_5083 c0c441fb41d9bbdd56e173193a5b4ccf 96 SUPERFAMILY SSF47413 30 89 3.75E-10 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5083 c0c441fb41d9bbdd56e173193a5b4ccf 96 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 5 91 1.6E-35 T 31-10-2018 IPR014057 Uncharacterized protein HI1420 Y89_6351 c0c441fb41d9bbdd56e173193a5b4ccf 96 Pfam PF01381 Helix-turn-helix 47 90 3.6E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_6351 c0c441fb41d9bbdd56e173193a5b4ccf 96 SUPERFAMILY SSF47413 30 89 3.75E-10 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_6351 c0c441fb41d9bbdd56e173193a5b4ccf 96 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 5 91 1.6E-35 T 31-10-2018 IPR014057 Uncharacterized protein HI1420 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 15 123 4.5E-40 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 SUPERFAMILY SSF57716 93 131 2.71E-9 T 31-10-2018 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 126 4.2E-11 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 11 132 27.461 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 Gene3D G3DSA:1.20.120.910 1 134 1.0E-52 T 31-10-2018 Y89_6276 a7ccff6bd3f54687dda5acd52fa7f0f0 134 SUPERFAMILY SSF109635 1 92 3.92E-24 T 31-10-2018 IPR037187 DksA, N-terminal domain superfamily Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 SUPERFAMILY SSF64484 16 1363 0.0 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 2.4E-90 T 31-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 14 1387 19.056 T 31-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:1.10.1790.20 1135 1314 1.0E-61 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:1.10.132.30 641 790 1.3E-65 T 31-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 SMART SM00663 235 514 5.7E-185 T 31-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 948 1022 1.6E-26 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 2.5E-28 T 31-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 381 2.2E-7 T 31-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 1023 1126 4.8E-28 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:1.10.150.390 1316 1375 9.8E-28 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:1.10.40.90 374 416 6.5E-21 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 643 4.9E-30 T 31-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:1.10.274.100 490 640 5.9E-41 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 4.4E-20 T 31-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Gene3D G3DSA:2.40.50.100 1151 1215 1.0E-61 T 31-10-2018 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 31-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0753 f8ce6d5d0ac39ad4f1cb133c06301d79 1399 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1316 2.6E-77 T 31-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_5626 62a55a8ea15bef9153641305b15215f4 271 Gene3D G3DSA:3.40.250.10 146 271 1.7E-33 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5626 62a55a8ea15bef9153641305b15215f4 271 SUPERFAMILY SSF52821 145 270 2.62E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5626 62a55a8ea15bef9153641305b15215f4 271 Gene3D G3DSA:3.40.250.10 2 144 1.8E-36 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5626 62a55a8ea15bef9153641305b15215f4 271 Pfam PF00581 Rhodanese-like domain 151 263 1.3E-16 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5626 62a55a8ea15bef9153641305b15215f4 271 Pfam PF00581 Rhodanese-like domain 13 122 1.1E-13 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5626 62a55a8ea15bef9153641305b15215f4 271 SUPERFAMILY SSF52821 3 132 2.1E-31 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5626 62a55a8ea15bef9153641305b15215f4 271 SMART SM00450 11 126 4.9E-17 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5626 62a55a8ea15bef9153641305b15215f4 271 SMART SM00450 149 267 5.0E-22 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5626 62a55a8ea15bef9153641305b15215f4 271 ProSitePatterns PS00380 Rhodanese signature 1. 36 47 - T 31-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 Y89_5626 62a55a8ea15bef9153641305b15215f4 271 ProSitePatterns PS00683 Rhodanese C-terminal signature. 251 261 - T 31-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 Y89_5305 e41b080caf28c9fa1bbb5aca29a54b4b 271 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 50 210 2.3E-38 T 31-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Y89_5305 e41b080caf28c9fa1bbb5aca29a54b4b 271 Pfam PF01066 CDP-alcohol phosphatidyltransferase 43 106 5.7E-13 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_5305 e41b080caf28c9fa1bbb5aca29a54b4b 271 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 84 106 - T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_5305 e41b080caf28c9fa1bbb5aca29a54b4b 271 Gene3D G3DSA:1.20.120.1760 35 181 3.5E-14 T 31-10-2018 Y89_1429 579d419480b0da3e8f1c65861488df50 440 PIRSF PIRSF006060 1 435 6.5E-69 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_1429 579d419480b0da3e8f1c65861488df50 440 Pfam PF00324 Amino acid permease 13 361 1.9E-38 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_1429 579d419480b0da3e8f1c65861488df50 440 Gene3D G3DSA:1.20.1740.10 2 431 9.3E-76 T 31-10-2018 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF52540 140 384 2.01E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 SMART SM00448 5 116 5.5E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:3.40.50.2300 3 125 4.0E-37 T 31-10-2018 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF52172 5 186 4.84E-43 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:3.40.50.300 130 312 7.4E-67 T 31-10-2018 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:1.10.10.60 385 466 2.1E-25 T 31-10-2018 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 7 463 2.4E-243 T 31-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF02954 Bacterial regulatory protein, Fis family 423 463 4.7E-13 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Gene3D G3DSA:1.10.8.60 313 384 9.3E-19 T 31-10-2018 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 2.7E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 2.7E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF00158 Sigma-54 interaction domain 141 308 3.8E-71 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 Pfam PF00072 Response regulator receiver domain 7 115 1.4E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 SMART SM00382 161 304 7.8E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5796 52c6c342f610b5d2d564aea994e3b4ba 476 SUPERFAMILY SSF46689 381 465 6.27E-21 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0233 d35aff16f2c5c501e61c837a28b758e6 283 Pfam PF01144 Coenzyme A transferase 6 216 1.9E-24 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_0233 d35aff16f2c5c501e61c837a28b758e6 283 SMART SM00882 4 224 9.1E-47 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_0233 d35aff16f2c5c501e61c837a28b758e6 283 Gene3D G3DSA:3.30.30.40 118 154 8.2E-72 T 31-10-2018 Y89_0233 d35aff16f2c5c501e61c837a28b758e6 283 SUPERFAMILY SSF100950 4 277 8.37E-79 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_0233 d35aff16f2c5c501e61c837a28b758e6 283 Gene3D G3DSA:3.40.1080.10 4 280 8.2E-72 T 31-10-2018 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Gene3D G3DSA:3.20.20.70 483 1169 0.0 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 SUPERFAMILY SSF51395 445 1187 4.08E-250 T 31-10-2018 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Gene3D G3DSA:2.160.20.60 1195 1469 9.2E-101 T 31-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Pfam PF01493 GXGXG motif 1236 1422 3.7E-77 T 31-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 SUPERFAMILY SSF56235 15 432 5.58E-143 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Gene3D G3DSA:3.60.20.10 15 545 0.0 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Pfam PF01645 Conserved region in glutamate synthase 792 1155 1.2E-148 T 31-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Pfam PF04898 Glutamate synthase central domain 458 736 1.2E-100 T 31-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Gene3D G3DSA:3.20.20.70 433 791 0.0 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 SUPERFAMILY SSF69336 1212 1466 6.02E-87 T 31-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Y89_5708 34173b8f9539aa5be959c490d3baa901 1481 Pfam PF00310 Glutamine amidotransferases class-II 15 428 3.2E-173 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 431 1.6E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 SMART SM00304 168 221 1.3E-4 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 429 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 373 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 387 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 Pfam PF00672 HAMP domain 168 217 2.5E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 SMART SM00387 320 432 1.3E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 Gene3D G3DSA:3.30.565.10 284 432 3.9E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 SMART SM00388 222 282 5.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 Gene3D G3DSA:1.10.287.130 165 277 1.7E-22 T 31-10-2018 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 278 6.7E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 SUPERFAMILY SSF55874 284 431 2.49E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5886 d0430ba83b1c660afa5b54b31c262c3a 439 SUPERFAMILY SSF47384 206 279 5.1E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.903 T 31-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.6E-29 T 31-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 2.6E-28 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 Gene3D G3DSA:3.10.50.30 76 158 2.2E-30 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 SUPERFAMILY SSF46557 3 78 1.02E-27 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 SUPERFAMILY SSF54534 82 157 2.09E-24 T 31-10-2018 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 PIRSF PIRSF006092 1 158 1.3E-52 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 Gene3D G3DSA:1.10.287.180 1 75 2.9E-30 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Y89_5367 1a023b65d9a9021d5826c3be752dca2c 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 1.3E-57 T 31-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 1.9E-169 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 Hamap MF_00268 Protein RecA [recA]. 5 329 50.98 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 127 156 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 210 238 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 297 314 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 165 194 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 243 272 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 PRINTS PR00142 RecA protein signature 93 122 8.6E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 SUPERFAMILY SSF54752 269 324 8.24E-20 T 31-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 Gene3D G3DSA:3.40.50.300 26 267 1.1E-82 T 31-10-2018 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 SMART SM00382 57 228 9.7E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 SUPERFAMILY SSF52540 5 267 5.88E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 Pfam PF00154 recA bacterial DNA recombination protein 7 267 7.5E-144 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 Gene3D G3DSA:3.30.250.10 268 346 1.5E-24 T 31-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Y89_1409 4a2e2c874a32e8d29b02bf6bcd78e201 346 ProSitePatterns PS00321 recA signature. 213 221 - T 31-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Y89_5658 1e3688731b8492805ac252a3748461e9 199 Pfam PF07883 Cupin domain 127 193 5.0E-18 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_5658 1e3688731b8492805ac252a3748461e9 199 Gene3D G3DSA:2.60.120.10 108 198 3.9E-19 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5658 1e3688731b8492805ac252a3748461e9 199 Gene3D G3DSA:1.10.260.40 17 84 4.8E-17 T 31-10-2018 Y89_5658 1e3688731b8492805ac252a3748461e9 199 SUPERFAMILY SSF47413 18 81 3.38E-16 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5658 1e3688731b8492805ac252a3748461e9 199 SMART SM00530 23 78 7.0E-12 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_5658 1e3688731b8492805ac252a3748461e9 199 SUPERFAMILY SSF51182 86 197 1.92E-27 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5658 1e3688731b8492805ac252a3748461e9 199 Pfam PF01381 Helix-turn-helix 24 78 4.4E-11 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3081 bd26dd098c6ded762b7438063f16ff13 114 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 78 4.6E-19 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_3081 bd26dd098c6ded762b7438063f16ff13 114 SUPERFAMILY SSF54909 1 95 3.18E-28 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3081 bd26dd098c6ded762b7438063f16ff13 114 Gene3D G3DSA:3.30.70.100 1 100 1.8E-28 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Gene3D G3DSA:3.40.228.10 144 345 1.9E-190 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Pfam PF01568 Molydopterin dinucleotide binding domain 591 700 4.3E-28 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Pfam PF00384 Molybdopterin oxidoreductase 79 492 5.9E-84 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 PIRSF PIRSF036643 2 731 8.0E-170 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 8 56 8.6E-18 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 12 30 - T 31-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 SUPERFAMILY SSF50692 562 706 9.72E-42 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Gene3D G3DSA:2.20.25.90 3 59 1.1E-15 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Pfam PF04324 BFD-like [2Fe-2S] binding domain 853 899 6.3E-9 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Gene3D G3DSA:3.40.50.740 80 547 1.9E-190 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 438 455 - T 31-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 SMART SM00926 7 60 2.2E-19 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Gene3D G3DSA:1.10.10.1100 852 901 2.7E-6 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 SUPERFAMILY SSF53706 6 499 1.2E-197 T 31-10-2018 Y89_3553 7ac4a33c2cda84d14d835b4638c143cb 915 Gene3D G3DSA:2.40.40.20 581 708 2.9E-38 T 31-10-2018 Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 Gene3D G3DSA:1.10.10.10 13 101 2.6E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 Gene3D G3DSA:3.40.190.10 179 281 2.5E-47 T 31-10-2018 Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 2.6E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 Gene3D G3DSA:3.40.190.10 105 298 2.5E-47 T 31-10-2018 Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 SUPERFAMILY SSF46785 13 123 1.47E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 SUPERFAMILY SSF53850 104 312 7.19E-39 T 31-10-2018 Y89_3073 608385dd7dd911a1f27e3f034bac04c1 315 Pfam PF03466 LysR substrate binding domain 103 308 1.3E-39 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2610 5a82895a87e46224105514400282a2fd 145 SMART SM00344 2 108 8.0E-28 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_2610 5a82895a87e46224105514400282a2fd 145 Pfam PF01037 Lrp/AsnC ligand binding domain 68 134 1.1E-15 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_2610 5a82895a87e46224105514400282a2fd 145 SUPERFAMILY SSF46785 2 62 8.1E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2610 5a82895a87e46224105514400282a2fd 145 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 8.9E-14 T 31-10-2018 Y89_2610 5a82895a87e46224105514400282a2fd 145 SUPERFAMILY SSF54909 64 137 3.75E-15 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_2610 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 2.8E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_2610 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 2.8E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_2610 5a82895a87e46224105514400282a2fd 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 2.8E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_2610 5a82895a87e46224105514400282a2fd 145 Gene3D G3DSA:3.30.70.920 53 138 6.4E-20 T 31-10-2018 Y89_2610 5a82895a87e46224105514400282a2fd 145 Gene3D G3DSA:1.10.10.10 3 52 2.6E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 205 593 42.347 T 31-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 246 257 - T 31-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 44 171 1.5E-41 T 31-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Gene3D G3DSA:1.10.645.20 208 593 2.2E-147 T 31-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 209 593 3.9E-172 T 31-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 43 170 3.1E-42 T 31-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 323 593 2.3E-106 T 31-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 10 593 71.848 T 31-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 SUPERFAMILY SSF143243 18 223 4.58E-60 T 31-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Gene3D G3DSA:3.30.460.80 10 151 6.2E-34 T 31-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 99 154 1.0E-26 T 31-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 SUPERFAMILY SSF56762 219 593 5.89E-123 T 31-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2449 f7e72e4e6d8842b628980b50c71da063 593 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 19 179 25.66 T 31-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.30.565.10 643 805 3.7E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SUPERFAMILY SSF47384 562 643 1.26E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Pfam PF00512 His Kinase A (phospho-acceptor) domain 577 642 3.4E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.40.50.2300 812 949 3.7E-37 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SUPERFAMILY SSF53850 287 516 5.35E-25 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 690 802 3.1E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SMART SM00062 293 519 2.1E-5 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SMART SM00062 55 261 3.6E-21 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:1.10.287.130 563 642 3.0E-19 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SMART SM00387 689 804 1.7E-34 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.40.190.10 47 265 1.2E-50 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SUPERFAMILY SSF55874 632 801 1.31E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 PRINTS PR00344 Bacterial sensor protein C-terminal signature 788 801 3.5E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 PRINTS PR00344 Bacterial sensor protein C-terminal signature 764 782 3.5E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 757 3.5E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 PRINTS PR00344 Bacterial sensor protein C-terminal signature 729 743 3.5E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SMART SM00388 576 642 2.7E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Pfam PF00072 Response regulator receiver domain 833 947 6.2E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SUPERFAMILY SSF52172 831 948 1.28E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SMART SM00448 831 947 2.3E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 57 253 2.2E-18 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.40.190.10 284 516 4.2E-49 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 SUPERFAMILY SSF53850 56 255 1.0E-28 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.40.190.10 378 479 4.2E-49 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Gene3D G3DSA:3.40.190.10 137 228 1.2E-50 T 31-10-2018 Y89_2604 ed0c9cae0452c63257a7a4bbe41852a8 961 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 308 516 7.2E-17 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3000 be1d42e36d86292c605932df09bcb39a 328 Gene3D G3DSA:3.30.60.140 281 328 4.9E-36 T 31-10-2018 Y89_3000 be1d42e36d86292c605932df09bcb39a 328 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 48 301 1.1E-78 T 31-10-2018 IPR007817 Pyoverdine biosynthesis Y89_3000 be1d42e36d86292c605932df09bcb39a 328 PIRSF PIRSF037196 2 325 1.8E-167 T 31-10-2018 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA Y89_5771 394d8212089590c79caf150cb2475e0a 559 Pfam PF17392 Urocanase C-terminal domain 352 546 2.6E-92 T 31-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 Pfam PF17391 Urocanase N-terminal domain 12 138 9.7E-63 T 31-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 Gene3D G3DSA:3.40.50.10730 142 349 9.0E-266 T 31-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 Hamap MF_00577 Urocanate hydratase [hutU]. 3 556 51.041 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 31-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 Gene3D G3DSA:3.40.1770.10 17 542 9.0E-266 T 31-10-2018 Y89_5771 394d8212089590c79caf150cb2475e0a 559 Pfam PF01175 Urocanase Rossmann-like domain 141 349 4.0E-88 T 31-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 SUPERFAMILY SSF111326 8 555 3.79E-264 T 31-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5771 394d8212089590c79caf150cb2475e0a 559 PIRSF PIRSF001423 3 559 1.3E-297 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_2687 9486540aacda4d5aa0a6709f34a7923b 448 Gene3D G3DSA:2.40.160.10 15 448 1.9E-149 T 31-10-2018 IPR023614 Porin domain superfamily Y89_2687 9486540aacda4d5aa0a6709f34a7923b 448 Pfam PF03573 outer membrane porin, OprD family 35 446 7.1E-147 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 7.4E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 7.4E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 9.2E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 SUPERFAMILY SSF53383 133 491 6.33E-83 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 Gene3D G3DSA:1.10.10.10 21 101 3.8E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 SMART SM00345 28 87 2.7E-15 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 SUPERFAMILY SSF46785 19 91 1.36E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 Pfam PF00155 Aminotransferase class I and II 165 368 4.7E-18 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_0857 f3a7d614510c3848541893a471b2d1b0 496 Gene3D G3DSA:3.40.640.10 126 483 1.6E-110 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0956 b0a862d58eeca0ffa05329dfd03a18b6 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 243 4.0E-66 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_0956 b0a862d58eeca0ffa05329dfd03a18b6 309 Gene3D G3DSA:3.40.50.720 7 297 2.7E-96 T 31-10-2018 Y89_0956 b0a862d58eeca0ffa05329dfd03a18b6 309 Gene3D G3DSA:3.90.25.10 174 305 2.7E-96 T 31-10-2018 Y89_0956 b0a862d58eeca0ffa05329dfd03a18b6 309 SUPERFAMILY SSF51735 5 306 5.11E-90 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3342 29272cb09dc1b824f1299ba5d4cc3220 215 SUPERFAMILY SSF141571 36 209 1.81E-39 T 31-10-2018 Y89_3342 29272cb09dc1b824f1299ba5d4cc3220 215 Pfam PF00805 Pentapeptide repeats (8 copies) 167 206 5.6E-10 T 31-10-2018 IPR001646 Pentapeptide repeat Y89_3342 29272cb09dc1b824f1299ba5d4cc3220 215 Pfam PF00805 Pentapeptide repeats (8 copies) 127 166 2.3E-8 T 31-10-2018 IPR001646 Pentapeptide repeat Y89_3342 29272cb09dc1b824f1299ba5d4cc3220 215 Pfam PF00805 Pentapeptide repeats (8 copies) 72 107 3.0E-11 T 31-10-2018 IPR001646 Pentapeptide repeat Y89_3342 29272cb09dc1b824f1299ba5d4cc3220 215 Gene3D G3DSA:2.160.20.80 12 215 6.1E-46 T 31-10-2018 Y89_1684 a106aec242f5c0072ee10b4f8f8f5651 295 PIRSF PIRSF007580 1 293 2.7E-120 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_1684 a106aec242f5c0072ee10b4f8f8f5651 295 Pfam PF10118 Predicted metal-dependent hydrolase 10 273 9.3E-73 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 390 5.8E-27 T 31-10-2018 IPR000160 GGDEF domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Gene3D G3DSA:3.30.70.270 219 397 6.0E-42 T 31-10-2018 Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 SUPERFAMILY SSF141868 414 647 3.14E-46 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 SUPERFAMILY SSF55073 241 391 6.51E-26 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Pfam PF00563 EAL domain 415 643 4.8E-46 T 31-10-2018 IPR001633 EAL domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 SMART SM00052 408 648 5.8E-12 T 31-10-2018 IPR001633 EAL domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Gene3D G3DSA:3.20.20.450 406 647 1.3E-53 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 SMART SM00304 171 223 8.9E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 389 8.2E-19 T 31-10-2018 IPR000160 GGDEF domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Gene3D G3DSA:3.30.1040.50 101 151 3.0E-22 T 31-10-2018 Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 SMART SM00267 225 398 5.1E-31 T 31-10-2018 IPR000160 GGDEF domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Pfam PF16448 LapD/MoxY periplasmic domain 23 145 7.3E-41 T 31-10-2018 IPR032244 LapD/MoxY, periplasmic domain Y89_3906 b9d7852ec7c47c2e34fa84280093ea79 650 Pfam PF00672 HAMP domain 171 219 2.0E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5131 f0fc821df98cf248403c7cc690ee3024 59 Gene3D G3DSA:3.40.30.10 2 59 2.2E-7 T 31-10-2018 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 Pfam PF00591 Glycosyl transferase family, a/b domain 105 249 3.7E-5 T 31-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 Gene3D G3DSA:1.20.970.10 10 79 2.0E-26 T 31-10-2018 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 SUPERFAMILY SSF52418 81 324 1.44E-59 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 Gene3D G3DSA:3.40.1030.10 80 326 2.3E-60 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 SUPERFAMILY SSF47648 18 78 4.06E-16 T 31-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_2479 679c4968c742f70f55fff4bd144e6d07 327 Pfam PF02885 Glycosyl transferase family, helical bundle domain 22 76 8.6E-18 T 31-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Y89_3965 29ef38b2d3c0c80f40a3a6e145a99fcc 337 Gene3D G3DSA:3.40.50.720 3 274 2.3E-133 T 31-10-2018 Y89_3965 29ef38b2d3c0c80f40a3a6e145a99fcc 337 SUPERFAMILY SSF51735 1 335 6.67E-95 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3965 29ef38b2d3c0c80f40a3a6e145a99fcc 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 7.8E-143 T 31-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Y89_3965 29ef38b2d3c0c80f40a3a6e145a99fcc 337 Gene3D G3DSA:3.90.25.10 194 329 2.3E-133 T 31-10-2018 Y89_3965 29ef38b2d3c0c80f40a3a6e145a99fcc 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.2E-53 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_4994 724644666e54309d42a01c8caf268db2 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.9E-17 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_4994 724644666e54309d42a01c8caf268db2 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.9E-17 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_4994 724644666e54309d42a01c8caf268db2 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.9E-17 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_4994 724644666e54309d42a01c8caf268db2 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 5.0E-19 T 31-10-2018 Y89_4994 724644666e54309d42a01c8caf268db2 157 SMART SM00344 3 112 5.6E-45 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_4994 724644666e54309d42a01c8caf268db2 157 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 8.8E-23 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_4994 724644666e54309d42a01c8caf268db2 157 SUPERFAMILY SSF46785 2 89 3.27E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4994 724644666e54309d42a01c8caf268db2 157 Gene3D G3DSA:1.10.10.10 4 54 3.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4994 724644666e54309d42a01c8caf268db2 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y89_4994 724644666e54309d42a01c8caf268db2 157 Gene3D G3DSA:3.30.70.920 56 140 2.3E-26 T 31-10-2018 Y89_4994 724644666e54309d42a01c8caf268db2 157 SUPERFAMILY SSF54909 63 152 1.47E-21 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3602 b468b2c1fcbc35611fa137ba02087c79 317 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 314 3.1E-93 T 31-10-2018 IPR007296 Domain of unknown function DUF403 Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 Gene3D G3DSA:3.40.50.720 1 260 4.9E-75 T 31-10-2018 Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 SUPERFAMILY SSF51735 4 250 9.35E-73 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 1.1E-4 T 31-10-2018 Y89_2557 4d54c6c61721242db0ad2149b0c35a51 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 248 3.8E-54 T 31-10-2018 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 SUPERFAMILY SSF51735 2 172 1.74E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 SMART SM00859 3 142 8.1E-64 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 159 315 6.2E-17 T 31-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 344 1.8E-132 T 31-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 SUPERFAMILY SSF55347 150 312 1.09E-51 T 31-10-2018 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 Gene3D G3DSA:3.40.50.720 3 330 1.4E-128 T 31-10-2018 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 338 43.662 T 31-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 145 161 - T 31-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 Gene3D G3DSA:3.30.360.10 148 312 1.4E-128 T 31-10-2018 Y89_0735 5f863bd2a6ba00d2581708d869705f97 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 142 3.8E-38 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_4523 419a6dbe0647294207db5eaf93dd90c3 161 Gene3D G3DSA:2.40.10.330 71 122 3.7E-57 T 31-10-2018 Y89_4523 419a6dbe0647294207db5eaf93dd90c3 161 SUPERFAMILY SSF54534 2 141 1.12E-36 T 31-10-2018 Y89_4523 419a6dbe0647294207db5eaf93dd90c3 161 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 136 8.8E-11 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_4523 419a6dbe0647294207db5eaf93dd90c3 161 Gene3D G3DSA:3.10.50.40 3 155 3.7E-57 T 31-10-2018 Y89_6175 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF52440 1 112 7.91E-45 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_6175 23417921b32004da26d70710c9d4dc01 471 SMART SM00878 334 440 1.2E-61 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_6175 23417921b32004da26d70710c9d4dc01 471 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 1.1E-42 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_6175 23417921b32004da26d70710c9d4dc01 471 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 320 2.4E-73 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_6175 23417921b32004da26d70710c9d4dc01 471 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 443 5.1E-190 T 31-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Y89_6175 23417921b32004da26d70710c9d4dc01 471 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 5.8E-41 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_6175 23417921b32004da26d70710c9d4dc01 471 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_6175 23417921b32004da26d70710c9d4dc01 471 Gene3D G3DSA:3.30.470.130 1 448 2.7E-189 T 31-10-2018 Y89_6175 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF56059 82 346 1.1E-67 T 31-10-2018 Y89_6175 23417921b32004da26d70710c9d4dc01 471 SUPERFAMILY SSF51246 329 445 3.09E-43 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_6175 23417921b32004da26d70710c9d4dc01 471 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 SUPERFAMILY SSF46785 7 92 1.18E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 Gene3D G3DSA:1.10.10.10 7 94 6.3E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 Gene3D G3DSA:3.40.190.10 97 297 7.5E-52 T 31-10-2018 Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 Pfam PF03466 LysR substrate binding domain 93 300 2.4E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 9.9E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 SUPERFAMILY SSF53850 94 303 6.67E-39 T 31-10-2018 Y89_2783 11c9c7ce6edc11bfba580b5442d238c7 312 Gene3D G3DSA:3.40.190.10 170 272 7.5E-52 T 31-10-2018 Y89_5848 d1715b29985b832d19dd4d9487dbd905 302 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 295 2.1E-115 T 31-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y89_5848 d1715b29985b832d19dd4d9487dbd905 302 Pfam PF04321 RmlD substrate binding domain 3 296 1.3E-111 T 31-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y89_5848 d1715b29985b832d19dd4d9487dbd905 302 Gene3D G3DSA:3.40.50.720 4 283 7.4E-108 T 31-10-2018 Y89_5848 d1715b29985b832d19dd4d9487dbd905 302 Gene3D G3DSA:3.90.25.10 159 286 7.4E-108 T 31-10-2018 Y89_5848 d1715b29985b832d19dd4d9487dbd905 302 SUPERFAMILY SSF51735 1 296 5.27E-96 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5340 43809f7339467104b7a94555211b541f 467 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 215 276 1.2E-20 T 31-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y89_5340 43809f7339467104b7a94555211b541f 467 Gene3D G3DSA:1.10.3090.10 186 433 2.6E-94 T 31-10-2018 Y89_5340 43809f7339467104b7a94555211b541f 467 Pfam PF01743 Poly A polymerase head domain 56 188 7.5E-38 T 31-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y89_5340 43809f7339467104b7a94555211b541f 467 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 13 459 38.005 T 31-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Y89_5340 43809f7339467104b7a94555211b541f 467 Pfam PF12626 Polymerase A arginine-rich C-terminus 330 446 3.3E-44 T 31-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain Y89_5340 43809f7339467104b7a94555211b541f 467 SUPERFAMILY SSF81301 29 185 2.4E-39 T 31-10-2018 Y89_5340 43809f7339467104b7a94555211b541f 467 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 25 457 1.6E-184 T 31-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Y89_5340 43809f7339467104b7a94555211b541f 467 Gene3D G3DSA:3.30.460.10 23 184 2.6E-58 T 31-10-2018 Y89_5340 43809f7339467104b7a94555211b541f 467 SUPERFAMILY SSF81891 186 421 1.29E-50 T 31-10-2018 Y89_1634 3810e3243d07f850309959d8186e5a0e 238 Pfam PF00005 ABC transporter 27 181 4.7E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1634 3810e3243d07f850309959d8186e5a0e 238 SMART SM00382 36 233 1.9E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1634 3810e3243d07f850309959d8186e5a0e 238 SUPERFAMILY SSF52540 4 227 4.31E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1634 3810e3243d07f850309959d8186e5a0e 238 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 4 226 2.4E-107 T 31-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1634 3810e3243d07f850309959d8186e5a0e 238 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1634 3810e3243d07f850309959d8186e5a0e 238 Gene3D G3DSA:3.40.50.300 1 236 8.6E-48 T 31-10-2018 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 SUPERFAMILY SSF50129 2 340 3.5E-58 T 31-10-2018 IPR011032 GroES-like superfamily Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 Pfam PF00107 Zinc-binding dehydrogenase 181 304 1.8E-28 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 Gene3D G3DSA:3.90.180.10 11 333 1.6E-145 T 31-10-2018 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 Gene3D G3DSA:3.40.50.720 154 291 1.6E-145 T 31-10-2018 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 SUPERFAMILY SSF51735 145 310 1.07E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 SMART SM00829 16 340 8.0E-6 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_6166 1b5cbdad32e62e70b648da468d47d093 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 136 4.4E-33 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 Gene3D G3DSA:3.40.50.970 13 216 2.0E-93 T 31-10-2018 Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 SUPERFAMILY SSF52922 218 348 5.5E-41 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 Pfam PF02780 Transketolase, C-terminal domain 224 340 4.9E-35 T 31-10-2018 IPR033248 Transketolase, C-terminal domain Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 Pfam PF02779 Transketolase, pyrimidine binding domain 16 191 5.4E-44 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 SMART SM00861 17 192 7.7E-67 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 Gene3D G3DSA:3.40.50.920 217 350 7.3E-56 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_3006 3ddd807ae82a24f7223a86102906ba75 350 SUPERFAMILY SSF52518 16 231 2.25E-66 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 Pfam PF00483 Nucleotidyl transferase 4 290 8.9E-54 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 Gene3D G3DSA:3.90.550.10 2 358 1.2E-113 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 477 4.5E-175 T 31-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 SUPERFAMILY SSF51182 189 477 4.12E-77 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 Pfam PF01050 Mannose-6-phosphate isomerase 323 473 1.7E-67 T 31-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 SUPERFAMILY SSF53448 2 286 4.41E-65 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_6193 b42c08d8bc01afef2d4c89adfc72afbf 479 Gene3D G3DSA:2.60.120.10 366 470 5.3E-16 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2693 7f6cf91066fd8e590b005a1a5afbd719 151 SUPERFAMILY SSF53927 2 127 1.67E-40 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_2693 7f6cf91066fd8e590b005a1a5afbd719 151 Gene3D G3DSA:3.40.140.10 1 151 1.7E-49 T 31-10-2018 Y89_2693 7f6cf91066fd8e590b005a1a5afbd719 151 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 89 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y89_2693 7f6cf91066fd8e590b005a1a5afbd719 151 Pfam PF14437 MafB19-like deaminase 2 111 1.1E-21 T 31-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y89_4076 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 Pfam PF00881 Nitroreductase family 20 183 2.5E-26 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y89_4076 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 SUPERFAMILY SSF55469 8 216 4.06E-47 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_4076 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 Gene3D G3DSA:3.40.109.10 1 190 5.4E-43 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_4076 94dbfcfe4ce34a36f6fc1fb9ccdfe39e 218 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 8 209 3.0E-73 T 31-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 Y89_3917 ca60295135b5323b7dab443709aaa7ca 296 Pfam PF04444 Catechol dioxygenase N terminus 31 103 9.1E-28 T 31-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 Y89_3917 ca60295135b5323b7dab443709aaa7ca 296 Pfam PF00775 Dioxygenase 110 294 3.5E-50 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_3917 ca60295135b5323b7dab443709aaa7ca 296 SUPERFAMILY SSF49482 14 295 2.35E-93 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_3917 ca60295135b5323b7dab443709aaa7ca 296 Gene3D G3DSA:2.60.130.10 8 296 5.2E-115 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_3917 ca60295135b5323b7dab443709aaa7ca 296 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 138 166 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_4949 beaff7eaa9639a33ed04ece7c9ebd587 190 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 10 186 2.2E-52 T 31-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Y89_4949 beaff7eaa9639a33ed04ece7c9ebd587 190 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 5 190 25.906 T 31-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Y89_4949 beaff7eaa9639a33ed04ece7c9ebd587 190 Gene3D G3DSA:2.60.450.10 64 190 5.2E-15 T 31-10-2018 Y89_4949 beaff7eaa9639a33ed04ece7c9ebd587 190 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 188 6.4E-52 T 31-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:2.20.70.80 403 454 2.3E-9 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 410 3.1E-35 T 31-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 713 787 7.4E-12 T 31-10-2018 IPR001357 BRCT domain Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:3.30.470.90 74 329 2.9E-96 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 617 1.4E-221 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Hamap MF_01588 DNA ligase [ligA]. 5 787 52.982 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:1.10.150.20 456 529 3.9E-29 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 330 5.3E-125 T 31-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SUPERFAMILY SSF47781 416 603 1.37E-52 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SUPERFAMILY SSF50249 330 412 3.26E-28 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SUPERFAMILY SSF47781 618 704 7.41E-14 T 31-10-2018 IPR010994 RuvA domain 2-like Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:1.10.150.20 530 611 2.6E-23 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SUPERFAMILY SSF52113 714 788 4.3E-17 T 31-10-2018 IPR036420 BRCT domain superfamily Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:3.40.50.10190 696 789 4.6E-23 T 31-10-2018 IPR036420 BRCT domain superfamily Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:1.10.150.20 628 687 7.4E-8 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SMART SM00292 713 790 2.4E-9 T 31-10-2018 IPR001357 BRCT domain Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:1.10.287.610 2 73 2.7E-30 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 419 458 1.3E-13 T 31-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 PIRSF PIRSF001604 620 792 3.1E-31 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 PIRSF PIRSF001604 1 622 1.8E-211 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 128 157 - T 31-10-2018 IPR018239 NAD-dependent DNA ligase, active site Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF12826 Helix-hairpin-helix motif 534 597 3.1E-21 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Pfam PF12826 Helix-hairpin-helix motif 631 687 1.3E-8 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SMART SM00532 6 472 8.1E-257 T 31-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 Gene3D G3DSA:2.40.50.140 330 402 8.1E-34 T 31-10-2018 Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 343 358 - T 31-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site Y89_3809 8742f8bde58e47dfdcf9e877905efd30 794 SUPERFAMILY SSF56091 3 328 2.16E-118 T 31-10-2018 Y89_5267 fb694b6b63a6b53209a011b75fe872c2 305 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 220 3.6E-25 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_5267 fb694b6b63a6b53209a011b75fe872c2 305 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 2.0E-20 T 31-10-2018 IPR013549 Domain of unknown function DUF1731 Y89_5267 fb694b6b63a6b53209a011b75fe872c2 305 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 2.3E-110 T 31-10-2018 IPR010099 Epimerase family protein SDR39U1 Y89_5267 fb694b6b63a6b53209a011b75fe872c2 305 SUPERFAMILY SSF51735 1 301 3.15E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5267 fb694b6b63a6b53209a011b75fe872c2 305 Gene3D G3DSA:3.40.50.720 2 301 4.6E-79 T 31-10-2018 Y89_0697 a5031c64a439e5dd2fcc17c1023505a4 167 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 1 167 1.4E-78 T 31-10-2018 IPR006498 Tail tube protein Y89_0697 a5031c64a439e5dd2fcc17c1023505a4 167 Pfam PF04985 Phage tail tube protein FII 3 166 6.1E-59 T 31-10-2018 IPR006498 Tail tube protein Y89_1016 cf24cb2e6593e8cdd896462a23c00109 407 Gene3D G3DSA:3.40.50.1820 17 284 1.8E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1016 cf24cb2e6593e8cdd896462a23c00109 407 Pfam PF00561 alpha/beta hydrolase fold 40 270 6.0E-13 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1016 cf24cb2e6593e8cdd896462a23c00109 407 SUPERFAMILY SSF53474 21 283 2.96E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5043 a7190ba4915e443e57cd27ccf38f2439 229 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 208 4.9E-16 T 31-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 9 427 6.6E-210 T 31-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 SUPERFAMILY SSF56529 121 425 2.22E-94 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 Pfam PF09298 Fumarylacetoacetase N-terminal 23 119 7.6E-23 T 31-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 125 423 7.7E-58 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 Gene3D G3DSA:2.30.30.230 1 116 4.1E-28 T 31-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 Gene3D G3DSA:3.90.850.10 117 427 1.1E-119 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_3315 f38797dfd75ec98d7e140bfee318c0ed 432 SUPERFAMILY SSF63433 8 119 1.09E-29 T 31-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 2.4E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 Pfam PF00106 short chain dehydrogenase 10 196 2.7E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 Gene3D G3DSA:3.30.160.260 250 301 4.1E-13 T 31-10-2018 Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 3.1E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 3.1E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 3.1E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 1.8E-5 T 31-10-2018 Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 Gene3D G3DSA:3.40.50.720 1 249 9.7E-74 T 31-10-2018 Y89_1580 b3765b56c7f3695814edcfedc241ff40 303 SUPERFAMILY SSF51735 5 252 1.03E-62 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5308 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52518 4 179 1.3E-65 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5308 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52467 189 360 4.36E-62 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_5308 f84c58e90485a051c87b2170070c3456 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 7.0E-49 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_5308 f84c58e90485a051c87b2170070c3456 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 4.6E-258 T 31-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Y89_5308 f84c58e90485a051c87b2170070c3456 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.2E-41 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_5308 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.1220 191 360 6.5E-58 T 31-10-2018 Y89_5308 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.970 367 566 5.3E-63 T 31-10-2018 Y89_5308 f84c58e90485a051c87b2170070c3456 574 Gene3D G3DSA:3.40.50.970 1 181 3.3E-73 T 31-10-2018 Y89_5308 f84c58e90485a051c87b2170070c3456 574 SUPERFAMILY SSF52518 374 567 5.31E-65 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5308 f84c58e90485a051c87b2170070c3456 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 165 2.7E-60 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 Gene3D G3DSA:3.40.640.10 517 771 2.2E-75 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 Pfam PF02347 Glycine cleavage system P-protein 18 441 4.3E-174 T 31-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 19 950 0.0 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 Gene3D G3DSA:3.90.1150.10 772 903 4.0E-39 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 SUPERFAMILY SSF53383 19 442 5.75E-97 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 10 956 25.705 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 Gene3D G3DSA:3.40.640.10 97 355 3.7E-102 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5900 d900add7f593c366e32dc3fb06c84f41 958 SUPERFAMILY SSF53383 473 951 4.31E-95 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3878 15704a0f5adf481eb987eb14fe23d700 296 Pfam PF00691 OmpA family 145 234 2.8E-17 T 31-10-2018 IPR006665 OmpA-like domain Y89_3878 15704a0f5adf481eb987eb14fe23d700 296 Gene3D G3DSA:3.30.1330.60 84 249 1.9E-44 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3878 15704a0f5adf481eb987eb14fe23d700 296 SUPERFAMILY SSF103088 127 240 1.7E-30 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3878 15704a0f5adf481eb987eb14fe23d700 296 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 57 7.2E-22 T 31-10-2018 IPR025713 Motility protein B, N-terminal domain Y89_0340 1699e44a26ba6e3a41fae41f9473aec7 116 Pfam PF04076 Bacterial OB fold (BOF) protein 19 113 1.2E-35 T 31-10-2018 IPR005220 Bacterial OB-fold Y89_0340 1699e44a26ba6e3a41fae41f9473aec7 116 SUPERFAMILY SSF101756 12 114 1.7E-29 T 31-10-2018 IPR036700 Bacterial OB-fold superfamily Y89_0340 1699e44a26ba6e3a41fae41f9473aec7 116 Gene3D G3DSA:2.40.50.200 13 116 5.1E-30 T 31-10-2018 IPR036700 Bacterial OB-fold superfamily Y89_4721 9c323fde22a696c8ed99709c075a9746 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 28.922 T 31-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair Y89_4721 9c323fde22a696c8ed99709c075a9746 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 2.2E-39 T 31-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Gene3D G3DSA:2.60.120.330 1 319 5.5E-113 T 31-10-2018 IPR027443 Isopenicillin N synthase-like Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 149 165 6.2E-14 T 31-10-2018 Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 234 260 6.2E-14 T 31-10-2018 Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 PRINTS PR00682 Isopenicillin N synthase signature 27 44 6.2E-14 T 31-10-2018 Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 SUPERFAMILY SSF51197 3 314 6.87E-102 T 31-10-2018 Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 174 274 6.3E-25 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y89_0160 b2fac67eacb30e25d2b99c33ee2dbd7d 320 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 4 128 4.5E-32 T 31-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain Y89_0291 a41b7645c5f21c030493af455dec7fcc 404 Gene3D G3DSA:1.20.1250.20 199 385 6.8E-22 T 31-10-2018 Y89_0291 a41b7645c5f21c030493af455dec7fcc 404 Pfam PF07690 Major Facilitator Superfamily 27 347 2.5E-23 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0291 a41b7645c5f21c030493af455dec7fcc 404 SUPERFAMILY SSF103473 5 385 6.93E-46 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0291 a41b7645c5f21c030493af455dec7fcc 404 Gene3D G3DSA:1.20.1250.20 9 198 7.7E-12 T 31-10-2018 Y89_3517 14ab70fd766364030faea91436c77d95 534 Gene3D G3DSA:3.10.350.10 347 397 1.3E-15 T 31-10-2018 IPR036779 LysM domain superfamily Y89_3517 14ab70fd766364030faea91436c77d95 534 Gene3D G3DSA:3.10.350.10 416 469 2.3E-16 T 31-10-2018 IPR036779 LysM domain superfamily Y89_3517 14ab70fd766364030faea91436c77d95 534 Gene3D G3DSA:3.10.350.10 481 531 7.4E-13 T 31-10-2018 IPR036779 LysM domain superfamily Y89_3517 14ab70fd766364030faea91436c77d95 534 SUPERFAMILY SSF54106 349 393 3.79E-11 T 31-10-2018 Y89_3517 14ab70fd766364030faea91436c77d95 534 Pfam PF01464 Transglycosylase SLT domain 131 230 4.3E-25 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_3517 14ab70fd766364030faea91436c77d95 534 SUPERFAMILY SSF53955 120 279 1.13E-41 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_3517 14ab70fd766364030faea91436c77d95 534 SUPERFAMILY SSF54106 420 462 1.44E-11 T 31-10-2018 Y89_3517 14ab70fd766364030faea91436c77d95 534 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 140 168 - T 31-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Y89_3517 14ab70fd766364030faea91436c77d95 534 Pfam PF06474 MltD lipid attachment motif 1 34 1.1E-15 T 31-10-2018 IPR010511 Lytic murein transglycosylase D , lipid attachment domain Y89_3517 14ab70fd766364030faea91436c77d95 534 Pfam PF01476 LysM domain 486 526 1.2E-8 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 Pfam PF01476 LysM domain 421 462 9.2E-14 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 Pfam PF01476 LysM domain 351 393 9.4E-13 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 SMART SM00257 420 463 3.2E-15 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 SMART SM00257 485 528 2.2E-8 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 SMART SM00257 350 393 8.3E-14 T 31-10-2018 IPR018392 LysM domain Y89_3517 14ab70fd766364030faea91436c77d95 534 SUPERFAMILY SSF54106 484 528 1.83E-10 T 31-10-2018 Y89_3517 14ab70fd766364030faea91436c77d95 534 Gene3D G3DSA:1.10.530.10 118 265 1.2E-30 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 445 527 3.5E-21 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 187 268 3.7E-28 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 1 112 1.33E-20 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 99 183 2.9E-7 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 6 98 3.3E-16 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 342 440 7.46E-23 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 189 277 1.94E-27 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 358 444 6.0E-25 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Gene3D G3DSA:2.40.50.140 269 357 2.6E-29 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 255 355 6.56E-26 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.5E-220 T 31-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 104 185 8.95E-15 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PIRSF PIRSF002111 1 386 1.1E-178 T 31-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PIRSF PIRSF002111 384 551 7.8E-40 T 31-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 361 434 9.8E-19 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 103 171 1.8E-11 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 448 520 1.1E-15 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 19 85 3.7E-7 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 275 347 2.0E-21 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 Pfam PF00575 S1 RNA binding domain 189 260 9.1E-22 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 190 260 1.4E-28 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 103 171 1.3E-8 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 275 347 1.8E-26 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 449 520 2.6E-21 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 19 87 2.0E-5 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SMART SM00316 362 434 9.7E-21 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 SUPERFAMILY SSF50249 429 536 8.95E-24 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.3E-88 T 31-10-2018 Y89_1854 7e45d1777c5edc21abf31241b8b041ba 559 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.3E-88 T 31-10-2018 Y89_4783 a3ec1df93e83aa22f47c45d8ceb41434 245 Gene3D G3DSA:1.25.40.10 35 211 8.8E-14 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4783 a3ec1df93e83aa22f47c45d8ceb41434 245 SUPERFAMILY SSF48452 53 202 1.41E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4783 a3ec1df93e83aa22f47c45d8ceb41434 245 PIRSF PIRSF029658 1 245 2.5E-75 T 31-10-2018 IPR016931 Uncharacterised conserved protein UCP029658, TPR Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 Gene3D G3DSA:3.40.50.720 3 313 9.4E-109 T 31-10-2018 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 286 4.9E-63 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 SUPERFAMILY SSF52283 1 133 1.4E-28 T 31-10-2018 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 318 2.0E-28 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 Gene3D G3DSA:3.40.50.720 96 287 9.4E-109 T 31-10-2018 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 175 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Y89_2991 c2e3b4a8e86a44dfb96f8bdbdf26e91f 328 SUPERFAMILY SSF51735 99 287 1.32E-59 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 Pfam PF01311 Bacterial export proteins, family 1 14 243 7.8E-68 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_5034 a330790c31a5e4dcbb607e204d52a949 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 255 1.5E-82 T 31-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Y89_3092 bf5a2e23d624416dbf2eb1134c8d3284 404 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 404 77.866 T 31-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_3092 bf5a2e23d624416dbf2eb1134c8d3284 404 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 11 295 3.3E-115 T 31-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_3092 bf5a2e23d624416dbf2eb1134c8d3284 404 Gene3D G3DSA:3.30.590.20 6 358 3.1E-88 T 31-10-2018 Y89_3092 bf5a2e23d624416dbf2eb1134c8d3284 404 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 12 290 1.4E-88 T 31-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_3092 bf5a2e23d624416dbf2eb1134c8d3284 404 SUPERFAMILY SSF55931 8 368 5.2E-86 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 PIRSF PIRSF037495 1 464 3.1E-137 T 31-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 SUPERFAMILY SSF51905 6 330 4.86E-30 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 311 1.4E-21 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:1.10.10.1100 370 439 2.2E-18 T 31-10-2018 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.8E-10 T 31-10-2018 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 310 1.8E-10 T 31-10-2018 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 1.8E-10 T 31-10-2018 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.8E-10 T 31-10-2018 Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:3.50.50.60 6 312 2.5E-32 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 Pfam PF04324 BFD-like [2Fe-2S] binding domain 381 424 7.8E-12 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_3085 930f54fef00747352a471a3f0b9e4cdd 464 Gene3D G3DSA:3.50.50.60 119 265 2.5E-32 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4450 7b990c623271fe88bc68bdf8427cc535 91 Pfam PF05449 Putative 3TM holin, Phage_holin_3 9 89 7.8E-27 T 31-10-2018 IPR008473 Putative 3TM holin, Phage holin 3 Y89_4562 fa6870b8677116753a305164fb034d74 375 PIRSF PIRSF001369 3 375 1.7E-119 T 31-10-2018 IPR024176 Citrate synthase, bacterial-type Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 328 342 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 198 226 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 251 271 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 176 191 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 308 324 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 PRINTS PR00143 Citrate synthase signature 126 139 7.5E-41 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 2.2E-155 T 31-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 SUPERFAMILY SSF48256 10 375 3.01E-128 T 31-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 31-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y89_4562 fa6870b8677116753a305164fb034d74 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 6.5E-120 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_4562 fa6870b8677116753a305164fb034d74 375 Gene3D G3DSA:1.10.580.10 32 355 2.0E-123 T 31-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y89_4562 fa6870b8677116753a305164fb034d74 375 Gene3D G3DSA:1.10.230.10 224 322 2.0E-123 T 31-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 1.5E-24 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 6.2E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 6.2E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 6.2E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 Gene3D G3DSA:3.40.50.1820 1 275 9.3E-92 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2370 ba8a86b1a838e2ba32d4d92deafac6be 276 SUPERFAMILY SSF53474 1 275 3.48E-62 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0856 9ff8632be43919eb3e8062a784c73244 152 SUPERFAMILY SSF55729 9 137 3.66E-32 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0856 9ff8632be43919eb3e8062a784c73244 152 Pfam PF00583 Acetyltransferase (GNAT) family 38 136 3.3E-17 T 31-10-2018 IPR000182 GNAT domain Y89_0856 9ff8632be43919eb3e8062a784c73244 152 Gene3D G3DSA:3.40.630.30 6 149 1.0E-39 T 31-10-2018 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PIRSF PIRSF001263 3 156 2.7E-64 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 Hamap MF_00535 Cyanate hydratase [cynS]. 1 156 78.039 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 Pfam PF02560 Cyanate lyase C-terminal domain 88 154 1.1E-31 T 31-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 TIGRFAM TIGR00673 cynS: cyanase 4 156 8.3E-60 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 SMART SM01116 83 156 1.7E-45 T 31-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PRINTS PR01693 Cyanase signature 91 105 5.7E-35 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PRINTS PR01693 Cyanase signature 141 151 5.7E-35 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PRINTS PR01693 Cyanase signature 22 37 5.7E-35 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PRINTS PR01693 Cyanase signature 42 59 5.7E-35 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 PRINTS PR01693 Cyanase signature 109 125 5.7E-35 T 31-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 Gene3D G3DSA:3.30.1160.10 89 156 1.0E-33 T 31-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 SUPERFAMILY SSF55234 88 155 2.09E-28 T 31-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 Y89_3223 bc98e82c418935418ecc451efaae2985 156 Gene3D G3DSA:1.10.260.40 1 88 1.8E-28 T 31-10-2018 Y89_3223 bc98e82c418935418ecc451efaae2985 156 SUPERFAMILY SSF47413 2 85 5.63E-20 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5965 d0cc80400599e90b2cc02f6a2e2b9ff6 46 PIRSF PIRSF037657 1 46 1.5E-25 T 31-10-2018 IPR017254 Lipoprotein, LppL Y89_5965 d0cc80400599e90b2cc02f6a2e2b9ff6 46 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 30 4.9E-8 T 31-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF01842 ACT domain 352 419 3.8E-16 T 31-10-2018 IPR002912 ACT domain Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.30.70.260 347 421 4.9E-165 T 31-10-2018 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF55347 135 300 1.5E-52 T 31-10-2018 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF51735 2 156 6.26E-35 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 SUPERFAMILY SSF55021 350 420 2.41E-15 T 31-10-2018 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 PIRSF PIRSF000098 1 433 2.8E-167 T 31-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF00742 Homoserine dehydrogenase 135 313 9.5E-64 T 31-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.30.360.10 134 346 4.9E-165 T 31-10-2018 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Gene3D G3DSA:3.40.50.720 4 338 4.9E-165 T 31-10-2018 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 3.0E-25 T 31-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Y89_1292 7bcd5def170badf68f83c5ec0ec03df7 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 181 203 - T 31-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SMART SM00091 433 500 8.6E-6 T 31-10-2018 IPR000014 PAS domain Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SUPERFAMILY SSF47384 537 608 8.24E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Pfam PF08448 PAS fold 439 540 2.3E-6 T 31-10-2018 IPR013656 PAS fold-4 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Gene3D G3DSA:3.30.565.10 620 765 2.4E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Gene3D G3DSA:1.10.287.130 541 609 2.3E-6 T 31-10-2018 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SUPERFAMILY SSF55785 418 535 2.47E-7 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 761 3.3E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Pfam PF05226 CHASE2 domain 35 323 2.6E-54 T 31-10-2018 IPR007890 CHASE2 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SMART SM00387 653 763 2.1E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SUPERFAMILY SSF55874 603 762 6.16E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 690 704 2.9E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 741 2.9E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 760 2.9E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 PIRSF PIRSF037347 2 766 4.4E-190 T 31-10-2018 IPR017181 Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 SMART SM01080 43 326 4.3E-87 T 31-10-2018 IPR007890 CHASE2 Y89_0988 62b50412310ef81fb5f27ed3e5207bbb 766 Gene3D G3DSA:3.30.450.20 419 540 6.0E-8 T 31-10-2018 Y89_3207 a0a5dc25eb2dc99698745b902e896af3 387 SUPERFAMILY SSF103473 2 374 4.45E-43 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3207 a0a5dc25eb2dc99698745b902e896af3 387 PIRSF PIRSF004925 1 384 5.0E-116 T 31-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter Y89_3207 a0a5dc25eb2dc99698745b902e896af3 387 Gene3D G3DSA:1.20.1250.20 189 381 1.8E-36 T 31-10-2018 Y89_3207 a0a5dc25eb2dc99698745b902e896af3 387 Pfam PF12832 MFS_1 like family 8 347 1.4E-38 T 31-10-2018 IPR024989 Major facilitator superfamily associated domain Y89_3207 a0a5dc25eb2dc99698745b902e896af3 387 Gene3D G3DSA:1.20.1250.20 1 176 1.5E-19 T 31-10-2018 Y89_4138 afed3928a10170aa0a447b52154fc4e7 492 ProSitePatterns PS00455 Putative AMP-binding domain signature. 147 158 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_4138 afed3928a10170aa0a447b52154fc4e7 492 Pfam PF00501 AMP-binding enzyme 21 394 3.6E-53 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_4138 afed3928a10170aa0a447b52154fc4e7 492 SUPERFAMILY SSF56801 11 488 8.11E-89 T 31-10-2018 Y89_4138 afed3928a10170aa0a447b52154fc4e7 492 Gene3D G3DSA:3.40.50.12780 6 388 1.4E-65 T 31-10-2018 Y89_4138 afed3928a10170aa0a447b52154fc4e7 492 Gene3D G3DSA:3.30.300.30 391 492 3.4E-9 T 31-10-2018 Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 26 378 1.9E-186 T 31-10-2018 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 PIRSF PIRSF037420 13 386 1.1E-139 T 31-10-2018 IPR017200 Coenzyme PQQ synthesis protein E Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 Gene3D G3DSA:3.20.20.70 22 250 3.9E-49 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 Pfam PF04055 Radical SAM superfamily 33 187 2.6E-25 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 Pfam PF13353 4Fe-4S single cluster domain 28 138 2.5E-10 T 31-10-2018 Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 SMART SM00729 27 230 5.8E-4 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_0532 43235cd2998837e5ccfdaaf72c1d09b6 387 SUPERFAMILY SSF102114 23 351 2.09E-68 T 31-10-2018 Y89_2043 af55bbc04b18460381c32ca323027534 339 Gene3D G3DSA:3.30.465.10 75 228 9.3E-62 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_2043 af55bbc04b18460381c32ca323027534 339 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 339 88.4 T 31-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_2043 af55bbc04b18460381c32ca323027534 339 SUPERFAMILY SSF56194 212 338 3.01E-46 T 31-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_2043 af55bbc04b18460381c32ca323027534 339 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 11 335 2.9E-71 T 31-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_2043 af55bbc04b18460381c32ca323027534 339 SUPERFAMILY SSF56176 10 197 1.54E-46 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_2043 af55bbc04b18460381c32ca323027534 339 Pfam PF01565 FAD binding domain 24 156 1.6E-26 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_2043 af55bbc04b18460381c32ca323027534 339 Gene3D G3DSA:3.90.78.10 229 339 9.6E-44 T 31-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_2043 af55bbc04b18460381c32ca323027534 339 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 216 338 3.2E-32 T 31-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_2043 af55bbc04b18460381c32ca323027534 339 Gene3D G3DSA:3.30.43.10 1 74 9.0E-31 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Y89_5599 be6520379382e8f25109c17a20c2001b 633 Pfam PF00990 Diguanylate cyclase, GGDEF domain 449 604 6.9E-49 T 31-10-2018 IPR000160 GGDEF domain Y89_5599 be6520379382e8f25109c17a20c2001b 633 Pfam PF07695 7TM diverse intracellular signalling 184 387 1.4E-37 T 31-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y89_5599 be6520379382e8f25109c17a20c2001b 633 Pfam PF07696 7TMR-DISM extracellular 2 38 172 7.8E-26 T 31-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y89_5599 be6520379382e8f25109c17a20c2001b 633 Gene3D G3DSA:3.30.70.270 443 617 3.8E-59 T 31-10-2018 Y89_5599 be6520379382e8f25109c17a20c2001b 633 SUPERFAMILY SSF55073 454 609 3.22E-50 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_5599 be6520379382e8f25109c17a20c2001b 633 SMART SM00267 438 610 3.5E-64 T 31-10-2018 IPR000160 GGDEF domain Y89_5599 be6520379382e8f25109c17a20c2001b 633 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 445 609 1.4E-48 T 31-10-2018 IPR000160 GGDEF domain Y89_5599 be6520379382e8f25109c17a20c2001b 633 Gene3D G3DSA:2.60.40.2380 34 174 1.2E-18 T 31-10-2018 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 Gene3D G3DSA:3.40.640.10 57 316 1.7E-101 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 Pfam PF00202 Aminotransferase class-III 22 407 4.0E-73 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 SUPERFAMILY SSF53383 10 411 9.83E-100 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 Gene3D G3DSA:3.90.1150.10 14 407 1.7E-101 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 269 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 PIRSF PIRSF000521 1 130 8.4E-5 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 PIRSF PIRSF000521 123 156 3.7 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_3048 fb06b3fd098a4afee4a265731175a36b 417 PIRSF PIRSF000521 183 414 1.2E-17 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 SUPERFAMILY SSF49503 119 278 2.43E-49 T 31-10-2018 IPR008972 Cupredoxin Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 Gene3D G3DSA:2.60.40.420 112 279 1.1E-54 T 31-10-2018 IPR008972 Cupredoxin Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 PIRSF PIRSF000292 1 310 2.8E-137 T 31-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 SUPERFAMILY SSF81464 26 116 3.43E-23 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 148 217 4.9E-7 T 31-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 Pfam PF06481 COX Aromatic Rich Motif 237 282 2.2E-15 T 31-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 15 237 3.3E-117 T 31-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Y89_4033 9db42d394cf820ff967f97c19aa20c8e 331 Gene3D G3DSA:1.10.287.90 26 111 7.5E-33 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2021 093caa195848d9a6f5173344849079dc 403 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 398 1.0E-197 T 31-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 Y89_2021 093caa195848d9a6f5173344849079dc 403 PIRSF PIRSF016055 1 403 1.4E-204 T 31-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 Y89_2021 093caa195848d9a6f5173344849079dc 403 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 402 37.626 T 31-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 Y89_2021 093caa195848d9a6f5173344849079dc 403 Pfam PF03116 NQR2, RnfD, RnfE family 41 395 3.1E-110 T 31-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Y89_4948 626af191a378248fa9929e5bee34e6c8 179 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 17 169 2.1E-50 T 31-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_4948 626af191a378248fa9929e5bee34e6c8 179 SUPERFAMILY SSF56784 13 172 2.23E-42 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4948 626af191a378248fa9929e5bee34e6c8 179 PIRSF PIRSF006118 4 179 1.3E-68 T 31-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_4948 626af191a378248fa9929e5bee34e6c8 179 Gene3D G3DSA:3.40.50.1000 2 179 2.3E-54 T 31-10-2018 IPR023214 HAD superfamily Y89_4948 626af191a378248fa9929e5bee34e6c8 179 Pfam PF08282 haloacid dehalogenase-like hydrolase 92 153 1.7E-6 T 31-10-2018 Y89_2683 05119e58afb8237341d725cb8226dd24 373 SUPERFAMILY SSF54826 6 130 1.44E-32 T 31-10-2018 Y89_2683 05119e58afb8237341d725cb8226dd24 373 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 195 226 - T 31-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Y89_2683 05119e58afb8237341d725cb8226dd24 373 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 104 129 - T 31-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Y89_2683 05119e58afb8237341d725cb8226dd24 373 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 129 1.3E-35 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y89_2683 05119e58afb8237341d725cb8226dd24 373 Pfam PF13378 Enolase C-terminal domain-like 152 365 2.4E-44 T 31-10-2018 IPR029065 Enolase C-terminal domain-like Y89_2683 05119e58afb8237341d725cb8226dd24 373 Gene3D G3DSA:3.20.20.120 122 357 1.8E-121 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_2683 05119e58afb8237341d725cb8226dd24 373 Gene3D G3DSA:3.30.390.10 12 365 1.8E-121 T 31-10-2018 IPR029017 Enolase-like, N-terminal Y89_2683 05119e58afb8237341d725cb8226dd24 373 SUPERFAMILY SSF51604 129 370 3.93E-61 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_2683 05119e58afb8237341d725cb8226dd24 373 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 6 372 7.1E-152 T 31-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 Y89_2683 05119e58afb8237341d725cb8226dd24 373 SMART SM00922 147 245 5.1E-17 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y89_1773 15d817d4291d1907545c4fca942a6c6d 389 SUPERFAMILY SSF52151 9 251 3.14E-49 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_1773 15d817d4291d1907545c4fca942a6c6d 389 Gene3D G3DSA:3.40.1090.10 5 108 8.2E-19 T 31-10-2018 Y89_1773 15d817d4291d1907545c4fca942a6c6d 389 Gene3D G3DSA:3.40.1090.10 121 245 3.0E-8 T 31-10-2018 Y89_1773 15d817d4291d1907545c4fca942a6c6d 389 Pfam PF01734 Patatin-like phospholipase 14 226 3.2E-23 T 31-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00989 PAS fold 147 249 1.0E-6 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.30.70.270 256 431 7.7E-51 T 31-10-2018 Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.40.50.2300 4 123 2.2E-6 T 31-10-2018 Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SMART SM00052 439 683 1.6E-38 T 31-10-2018 IPR001633 EAL domain Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 251 2.6E-9 T 31-10-2018 IPR000014 PAS domain Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00563 EAL domain 446 677 5.4E-58 T 31-10-2018 IPR001633 EAL domain Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF52172 6 142 3.7E-9 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Pfam PF00990 Diguanylate cyclase, GGDEF domain 268 422 8.4E-19 T 31-10-2018 IPR000160 GGDEF domain Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF141868 446 681 7.32E-53 T 31-10-2018 IPR035919 EAL domain superfamily Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF55785 131 251 5.76E-16 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.30.450.20 130 252 3.1E-16 T 31-10-2018 Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SUPERFAMILY SSF55073 273 430 4.87E-24 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 Gene3D G3DSA:3.20.20.450 441 691 2.5E-75 T 31-10-2018 IPR035919 EAL domain superfamily Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 SMART SM00267 256 428 3.1E-22 T 31-10-2018 IPR000160 GGDEF domain Y89_5629 8e52756397cb089fff4b9edd6cfb1124 691 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 265 424 1.2E-14 T 31-10-2018 IPR000160 GGDEF domain Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF56042 430 612 6.13E-54 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1297 0.0 T 31-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:3.90.650.10 395 613 1.8E-63 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:3.30.1330.10 212 394 1.4E-19 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:1.10.8.750 151 211 2.6E-28 T 31-10-2018 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1042 1297 4.4E-106 T 31-10-2018 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF109736 153 218 1.96E-21 T 31-10-2018 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:3.90.650.10 810 983 5.8E-33 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1298 21.377 T 31-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SMART SM01211 1042 1297 5.9E-155 T 31-10-2018 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF55326 622 814 2.33E-67 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF56042 823 1036 5.08E-56 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF55326 219 426 2.23E-63 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF52317 1039 1297 3.96E-96 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1264 70b61f3a845a0c364899076af97187c8 1298 SUPERFAMILY SSF82697 1 150 1.99E-47 T 31-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:3.30.1330.10 623 806 3.5E-23 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 836 966 2.3E-15 T 31-10-2018 IPR010918 PurM-like, C-terminal domain Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 430 587 4.1E-31 T 31-10-2018 IPR010918 PurM-like, C-terminal domain Y89_1264 70b61f3a845a0c364899076af97187c8 1298 Gene3D G3DSA:3.40.50.880 984 1298 6.1E-137 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 1.0E-37 T 31-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 Gene3D G3DSA:3.30.70.1060 1 94 6.5E-35 T 31-10-2018 Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.4E-44 T 31-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 PIRSF PIRSF001486 1 94 2.0E-44 T 31-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 4.0E-28 T 31-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Y89_2684 30b1975ba1c90f1ec384f6aab1989fe9 96 SUPERFAMILY SSF54909 1 95 3.75E-35 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_0073 5d18b1eb9cae172f57c5718dc350c1a4 375 PIRSF PIRSF029285 5 374 1.2E-178 T 31-10-2018 IPR014553 Predicted aminopeptidase Y89_0073 5d18b1eb9cae172f57c5718dc350c1a4 375 Pfam PF10023 Putative aminopeptidase 49 367 2.3E-134 T 31-10-2018 IPR014553 Predicted aminopeptidase Y89_6050 f01bde15287418f9c33519462185fcff 497 Pfam PF00171 Aldehyde dehydrogenase family 32 492 2.0E-170 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_6050 f01bde15287418f9c33519462185fcff 497 Gene3D G3DSA:3.40.309.10 271 463 2.4E-177 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_6050 f01bde15287418f9c33519462185fcff 497 SUPERFAMILY SSF53720 17 496 8.51E-167 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_6050 f01bde15287418f9c33519462185fcff 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_6050 f01bde15287418f9c33519462185fcff 497 Gene3D G3DSA:3.40.605.10 24 491 2.4E-177 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_6050 f01bde15287418f9c33519462185fcff 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 295 308 1.5E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 253 272 1.5E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 PRINTS PR00723 Subtilisin serine protease family (S8) signature 496 512 1.5E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 497 507 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 Pfam PF00082 Subtilase family 258 535 3.6E-21 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 PIRSF PIRSF029389 1 590 0.0 T 31-10-2018 IPR016916 Uncharacterised conserved protein UCP029389, subtilisin-related Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 Gene3D G3DSA:3.40.50.200 190 581 2.7E-33 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_4109 681b82e2e74e967d2c6ed16593e90660 590 SUPERFAMILY SSF52743 242 539 3.14E-36 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_2549 573d88134f49c5766ae900ed6970b3e0 323 Gene3D G3DSA:3.10.180.10 188 320 1.2E-11 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2549 573d88134f49c5766ae900ed6970b3e0 323 SUPERFAMILY SSF54593 10 287 3.68E-9 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 Pfam PF02119 Flagellar P-ring protein 24 368 4.0E-146 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 6 369 42.04 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 24 39 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 59 74 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 39 54 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 192 210 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 166 184 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 256 268 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_4270 cbce50df8ac4bf39b0cd4b546dcbc6af 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 8.1E-90 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.30.565.10 412 569 4.6E-12 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 SMART SM00448 11 124 4.2E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.40.50.2300 5 142 5.3E-37 T 31-10-2018 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 SMART SM00331 186 386 1.2E-5 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF00072 Response regulator receiver domain 13 124 1.7E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 SUPERFAMILY SSF55874 443 551 8.18E-7 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 198 386 3.7E-39 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Gene3D G3DSA:3.60.40.10 171 391 5.5E-34 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 SUPERFAMILY SSF52172 10 150 1.71E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1663 ec74d955d0410bf5aa47bae37cfdf9db 571 Pfam PF13581 Histidine kinase-like ATPase domain 494 563 2.2E-9 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 Gene3D G3DSA:3.40.50.2000 56 519 6.3E-151 T 31-10-2018 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 Pfam PF00534 Glycosyl transferases group 1 341 484 6.7E-15 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 SUPERFAMILY SSF53756 55 524 1.82E-105 T 31-10-2018 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 55 521 6.0E-160 T 31-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 Hamap MF_00484 Glycogen synthase [glgA]. 54 521 41.039 T 31-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 Pfam PF08323 Starch synthase catalytic domain 55 289 2.3E-65 T 31-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Y89_3111 8f186bebd25ac0f27e723ce79ef50645 534 Gene3D G3DSA:3.40.50.2000 305 505 6.3E-151 T 31-10-2018 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1131 1158 - T 31-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 SUPERFAMILY SSF50692 1085 1241 4.07E-48 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 Pfam PF00384 Molybdopterin oxidoreductase 108 836 2.1E-163 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 31-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 Pfam PF01568 Molydopterin dinucleotide binding domain 1094 1208 1.3E-22 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1241 0.0 T 31-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 Gene3D G3DSA:3.40.50.12440 44 1248 0.0 T 31-10-2018 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 780 797 - T 31-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 SMART SM00926 43 105 5.5E-8 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 1.6E-17 T 31-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Y89_1151 50bc315d0f81d760a3793e6385078bf4 1261 SUPERFAMILY SSF53706 4 1076 0.0 T 31-10-2018 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.3E-21 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF02978 Signal peptide binding domain 329 430 1.4E-32 T 31-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 SUPERFAMILY SSF52540 42 354 5.75E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:1.10.260.30 328 454 5.8E-42 T 31-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:3.40.50.300 90 285 2.3E-123 T 31-10-2018 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00963 1 86 2.1E-35 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 SUPERFAMILY SSF47446 329 433 8.99E-35 T 31-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 3.4E-74 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00962 100 296 2.1E-115 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Gene3D G3DSA:1.20.120.140 4 306 2.3E-123 T 31-10-2018 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 432 8.4E-177 T 31-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 SMART SM00382 99 247 3.2E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1281 1c23eb3808670651d8b3d1f08ba9f529 457 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 34.471 T 31-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 SUPERFAMILY SSF47384 212 280 4.71E-6 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 437 6.0E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 SMART SM00387 332 438 6.6E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 Gene3D G3DSA:3.30.565.10 296 442 5.7E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 SUPERFAMILY SSF55874 296 436 2.1E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 Gene3D G3DSA:1.10.287.130 174 282 5.6E-7 T 31-10-2018 Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 9.6E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 9.6E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2432 b657b735a58de856df8db6aa0f5f9dd0 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 9.6E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3997 54cb6b7f6f7d6af37a38d30621bd6c82 403 Gene3D G3DSA:1.20.1250.20 9 389 2.0E-33 T 31-10-2018 Y89_3997 54cb6b7f6f7d6af37a38d30621bd6c82 403 SUPERFAMILY SSF103473 9 389 7.72E-41 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3997 54cb6b7f6f7d6af37a38d30621bd6c82 403 Pfam PF07690 Major Facilitator Superfamily 22 315 4.1E-22 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:3.40.50.12780 50 515 2.9E-104 T 31-10-2018 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Gene3D G3DSA:3.30.300.30 518 651 1.7E-29 T 31-10-2018 Y89_4472 f925e89b92c5135c43769afc4810874e 651 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 0.0 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 1.8E-25 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_4472 f925e89b92c5135c43769afc4810874e 651 SUPERFAMILY SSF56801 17 642 1.28E-183 T 31-10-2018 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Pfam PF00501 AMP-binding enzyme 83 522 9.5E-93 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 2.9E-22 T 31-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y89_4472 f925e89b92c5135c43769afc4810874e 651 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 51.996 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Y89_4472 f925e89b92c5135c43769afc4810874e 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 Pfam PF12838 4Fe-4S dicluster domain 24 89 6.4E-12 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 Gene3D G3DSA:1.10.1060.10 2 106 8.3E-11 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 SUPERFAMILY SSF54862 18 124 1.46E-18 T 31-10-2018 Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 PIRSF PIRSF000139 5 408 1.8E-119 T 31-10-2018 Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 Pfam PF02754 Cysteine-rich domain 303 386 1.1E-13 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_6091 ee529fd34cafac420f7cfd6b9bea31be 408 Pfam PF02754 Cysteine-rich domain 171 255 3.8E-12 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_5216 c8345e1ca0dad9808f08ab02d6ffc6aa 125 Gene3D G3DSA:2.40.10.220 1 125 1.2E-42 T 31-10-2018 Y89_5216 c8345e1ca0dad9808f08ab02d6ffc6aa 125 SUPERFAMILY SSF141371 1 123 4.32E-39 T 31-10-2018 Y89_5216 c8345e1ca0dad9808f08ab02d6ffc6aa 125 Pfam PF07238 PilZ domain 7 103 4.0E-12 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_5216 c8345e1ca0dad9808f08ab02d6ffc6aa 125 PIRSF PIRSF028141 4 123 1.3E-39 T 31-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type Y89_1451 ea911716e97b88d5c82d1f8b5c49db39 65 SUPERFAMILY SSF55008 2 64 3.8E-16 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_1451 ea911716e97b88d5c82d1f8b5c49db39 65 Pfam PF00403 Heavy-metal-associated domain 3 60 1.8E-12 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_1451 ea911716e97b88d5c82d1f8b5c49db39 65 Gene3D G3DSA:3.30.70.100 3 62 2.4E-18 T 31-10-2018 Y89_1451 ea911716e97b88d5c82d1f8b5c49db39 65 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 31-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Gene3D G3DSA:1.10.287.470 97 156 6.4E-129 T 31-10-2018 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Gene3D G3DSA:2.40.420.20 289 358 6.4E-129 T 31-10-2018 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 SUPERFAMILY SSF111369 49 285 3.79E-94 T 31-10-2018 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 278 3.8E-16 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Gene3D G3DSA:2.40.50.100 62 192 6.4E-129 T 31-10-2018 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 360 4.7E-77 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Pfam PF00529 HlyD membrane-fusion protein of T1SS 279 346 1.2E-8 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0448 bf2d815fbdb178bae72127ecfdd32dd9 383 Gene3D G3DSA:2.40.30.170 48 288 6.4E-129 T 31-10-2018 Y89_2992 c209027b3bc9711ccd3017c047a9cee8 435 SUPERFAMILY SSF103473 5 417 5.23E-86 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2992 c209027b3bc9711ccd3017c047a9cee8 435 Gene3D G3DSA:1.20.1250.20 222 419 2.2E-37 T 31-10-2018 Y89_2992 c209027b3bc9711ccd3017c047a9cee8 435 PIRSF PIRSF002808 3 428 1.6E-35 T 31-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 Y89_2992 c209027b3bc9711ccd3017c047a9cee8 435 Gene3D G3DSA:1.20.1250.20 6 203 4.5E-39 T 31-10-2018 Y89_2992 c209027b3bc9711ccd3017c047a9cee8 435 Pfam PF07690 Major Facilitator Superfamily 18 375 3.4E-56 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1043 8e048150e10378ba929df78e280fbb3d 110 Pfam PF08850 Domain of unknown function (DUF1820) 8 103 1.5E-43 T 31-10-2018 IPR014949 Protein of unknown function DUF1820 Y89_1043 8e048150e10378ba929df78e280fbb3d 110 PIRSF PIRSF028538 2 109 9.3E-53 T 31-10-2018 IPR014949 Protein of unknown function DUF1820 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Pfam PF00583 Acetyltransferase (GNAT) family 158 248 6.3E-11 T 31-10-2018 IPR000182 GNAT domain Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 SUPERFAMILY SSF56059 333 578 2.53E-31 T 31-10-2018 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.40.630.30 12 263 3.9E-23 T 31-10-2018 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.30.470.20 487 577 3.6E-10 T 31-10-2018 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.30.470.20 326 434 2.3E-13 T 31-10-2018 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Gene3D G3DSA:3.30.1490.20 348 413 2.3E-13 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 Pfam PF08443 RimK-like ATP-grasp domain 332 434 4.4E-8 T 31-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 280 289 - T 31-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 SUPERFAMILY SSF55729 63 255 3.31E-26 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1546 f78ef244d00d02b8a54b8cad71938513 585 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 40 582 4.4E-274 T 31-10-2018 IPR017534 GNAT-acetyltransferase Y89_3988 e280bb28595a46636f7584d8c9a1082c 477 PIRSF PIRSF006603 15 469 6.1E-64 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_3988 e280bb28595a46636f7584d8c9a1082c 477 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 432 3.4E-101 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_3988 e280bb28595a46636f7584d8c9a1082c 477 Pfam PF01554 MatE 27 186 3.8E-35 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_3988 e280bb28595a46636f7584d8c9a1082c 477 Pfam PF01554 MatE 254 414 1.1E-34 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_5975 91ed34081b0be0640a9013af55a5bc1c 141 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 2.4E-34 T 31-10-2018 IPR001602 Uncharacterised protein family UPF0047 Y89_5975 91ed34081b0be0640a9013af55a5bc1c 141 Gene3D G3DSA:2.60.120.460 2 139 6.3E-37 T 31-10-2018 IPR035917 YjbQ-like superfamily Y89_5975 91ed34081b0be0640a9013af55a5bc1c 141 SUPERFAMILY SSF111038 1 139 2.09E-44 T 31-10-2018 IPR035917 YjbQ-like superfamily Y89_5975 91ed34081b0be0640a9013af55a5bc1c 141 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 139 4.4E-38 T 31-10-2018 IPR001602 Uncharacterised protein family UPF0047 Y89_5975 91ed34081b0be0640a9013af55a5bc1c 141 PIRSF PIRSF004681 1 139 2.3E-42 T 31-10-2018 IPR001602 Uncharacterised protein family UPF0047 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF53474 1874 2111 1.42E-41 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF00550 Phosphopantetheine attachment site 1794 1855 3.1E-5 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF00550 Phosphopantetheine attachment site 1259 1321 3.0E-13 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF00668 Condensation domain 1359 1780 7.5E-54 T 31-10-2018 IPR001242 Condensation domain Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF52777 201 418 6.56E-9 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.300.30 842 934 3.3E-13 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.40.50.12780 441 841 8.8E-105 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.559.10 9 178 1.8E-5 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF52777 1550 1779 1.09E-39 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF52777 1355 1561 9.89E-37 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.559.30 1554 1779 3.2E-38 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF00501 AMP-binding enzyme 456 847 4.3E-78 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 ProSitePatterns PS00455 Putative AMP-binding domain signature. 593 604 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF52777 21 192 7.11E-10 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 947 1122 4.3E-28 T 31-10-2018 IPR006342 Methyltransferase FkbM Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF56801 414 1269 1.07E-122 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF05050 Methyltransferase FkbM domain 950 1147 1.9E-13 T 31-10-2018 IPR006342 Methyltransferase FkbM Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.559.30 200 438 7.4E-9 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 477 872 2.4E-103 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF47336 1792 1854 3.04E-6 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Pfam PF00975 Thioesterase domain 1887 2107 1.2E-32 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SMART SM00823 Phosphopantetheine attachment site 1257 1325 0.0084 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SMART SM00823 Phosphopantetheine attachment site 1792 1843 0.11 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1815 1830 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.40.50.1820 1873 2113 7.8E-54 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SMART SM00824 Thioesterase 1889 2111 1.6E-4 T 31-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:1.10.1200.10 1247 1326 2.8E-21 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF47336 1250 1321 2.88E-16 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.300.30 1157 1239 1.0E-11 T 31-10-2018 Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 SUPERFAMILY SSF53335 917 1152 2.66E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:1.10.1200.10 1780 1861 8.6E-8 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2952 daa247ea83b65bf83e25157e083c643c 2125 Gene3D G3DSA:3.30.559.10 1352 1553 3.8E-44 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_4402 0a6006965c08a0c4de53526d00d4b529 91 SUPERFAMILY SSF54975 4 90 3.05E-26 T 31-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y89_4402 0a6006965c08a0c4de53526d00d4b529 91 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 31-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y89_4402 0a6006965c08a0c4de53526d00d4b529 91 Gene3D G3DSA:3.30.70.100 1 90 5.3E-30 T 31-10-2018 Y89_4402 0a6006965c08a0c4de53526d00d4b529 91 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 31-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y89_4402 0a6006965c08a0c4de53526d00d4b529 91 Pfam PF00708 Acylphosphatase 7 85 3.8E-24 T 31-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Y89_3651 c3acbae2160b001850134e76518f5e73 205 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 205 116.855 T 31-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 Y89_3651 c3acbae2160b001850134e76518f5e73 205 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 12 202 7.4E-72 T 31-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 Y89_3651 c3acbae2160b001850134e76518f5e73 205 SMART SM01007 10 198 5.8E-51 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_3651 c3acbae2160b001850134e76518f5e73 205 SUPERFAMILY SSF53639 5 203 2.16E-46 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_3651 c3acbae2160b001850134e76518f5e73 205 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 197 6.9E-38 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_3651 c3acbae2160b001850134e76518f5e73 205 Gene3D G3DSA:3.40.225.10 1 204 1.1E-49 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_4354 973f7afeb0a36adcef01739859571fdd 332 SUPERFAMILY SSF53850 140 296 1.16E-18 T 31-10-2018 Y89_4354 973f7afeb0a36adcef01739859571fdd 332 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 7.7E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4354 973f7afeb0a36adcef01739859571fdd 332 Gene3D G3DSA:3.40.190.290 94 309 1.4E-104 T 31-10-2018 Y89_4354 973f7afeb0a36adcef01739859571fdd 332 Gene3D G3DSA:1.10.10.10 3 83 1.3E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4354 973f7afeb0a36adcef01739859571fdd 332 SUPERFAMILY SSF46785 3 78 2.94E-13 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4354 973f7afeb0a36adcef01739859571fdd 332 Pfam PF03466 LysR substrate binding domain 139 292 6.2E-14 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SUPERFAMILY SSF158472 175 222 4.18E-5 T 31-10-2018 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SMART SM00304 171 224 2.2E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SUPERFAMILY SSF47384 208 291 9.61E-19 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 226 291 2.1E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 8 438 6.4E-169 T 31-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SMART SM00388 225 291 1.8E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SUPERFAMILY SSF55874 280 438 7.99E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 334 436 4.5E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 Gene3D G3DSA:3.30.565.10 296 442 1.7E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 Gene3D G3DSA:1.10.287.130 175 291 9.9E-25 T 31-10-2018 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 SMART SM00387 334 442 8.8E-37 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 1.8E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 1.8E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2219 794a9af7a83fc1160d3fd21c1d890bb8 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 1.8E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.0E-51 T 31-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.757 T 31-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 Pfam PF00547 Urease, gamma subunit 1 99 3.6E-47 T 31-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 PIRSF PIRSF001223 1 100 2.6E-50 T 31-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-37 T 31-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 SUPERFAMILY SSF54111 1 99 2.09E-46 T 31-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5534 bbd98d103d66c54e6bda4ac6e100ed7c 100 Gene3D G3DSA:3.30.280.10 4 100 1.7E-48 T 31-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 Gene3D G3DSA:1.10.357.10 4 214 5.4E-71 T 31-10-2018 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.5E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.5E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 3.2E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 SUPERFAMILY SSF46689 7 68 2.19E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0388 73c3fc670ed040a57ace31b147910e8c 215 Pfam PF13972 Bacterial transcriptional repressor 60 203 1.2E-46 T 31-10-2018 IPR025722 Bacterial transcriptional repressor TetR Y89_1747 6e6150c05bf67a22a9655f183700a548 104 Gene3D G3DSA:1.10.3730.20 1 104 6.4E-32 T 31-10-2018 Y89_1747 6e6150c05bf67a22a9655f183700a548 104 SUPERFAMILY SSF103481 5 103 2.35E-19 T 31-10-2018 Y89_1747 6e6150c05bf67a22a9655f183700a548 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 2.4E-28 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 SUPERFAMILY SSF53649 3 526 3.05E-152 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 Gene3D G3DSA:3.30.1120.10 451 536 2.7E-28 T 31-10-2018 Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 Pfam PF00884 Sulfatase 5 420 8.3E-92 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 ProSitePatterns PS00523 Sulfatases signature 1. 49 61 - T 31-10-2018 IPR024607 Sulfatase, conserved site Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 ProSitePatterns PS00149 Sulfatases signature 2. 105 115 - T 31-10-2018 IPR024607 Sulfatase, conserved site Y89_0195 73d4921b3fae2cc9096784c3051757c7 536 Gene3D G3DSA:3.40.720.10 1 450 3.5E-159 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_0560 5749f7044728725f3ea92704557c736f 193 Pfam PF02600 Disulfide bond formation protein DsbB 35 183 5.3E-34 T 31-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Y89_0560 5749f7044728725f3ea92704557c736f 193 Gene3D G3DSA:1.20.1550.10 25 191 9.0E-41 T 31-10-2018 IPR023380 DsbB-like superfamily Y89_0560 5749f7044728725f3ea92704557c736f 193 SUPERFAMILY SSF158442 37 183 9.81E-33 T 31-10-2018 IPR023380 DsbB-like superfamily Y89_0560 5749f7044728725f3ea92704557c736f 193 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 30 192 18.465 T 31-10-2018 IPR022920 Disulphide bond formation protein DsbB Y89_6181 79fde186e83904d317ad26c4bdc7a4a3 241 Pfam PF11340 Protein of unknown function (DUF3142) 99 184 2.0E-16 T 31-10-2018 IPR021488 Protein of unknown function DUF3142 Y89_6181 79fde186e83904d317ad26c4bdc7a4a3 241 Gene3D G3DSA:3.20.20.80 97 240 3.7E-5 T 31-10-2018 Y89_6181 79fde186e83904d317ad26c4bdc7a4a3 241 SUPERFAMILY SSF51445 105 200 6.59E-7 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_0363 89fac71e486e96c45307372683095943 264 SUPERFAMILY SSF55831 1 264 2.09E-131 T 31-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 Gene3D G3DSA:3.30.572.10 1 264 1.1E-132 T 31-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.6E-96 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 4.2E-41 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 9.9E-48 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 9.9E-48 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 9.9E-48 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 9.9E-48 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 9.9E-48 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 31-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.268 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_0363 89fac71e486e96c45307372683095943 264 Pfam PF00303 Thymidylate synthase 2 264 6.5E-126 T 31-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Y89_4956 b1a2478387312fb65a670dc47730f730 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 83 2.2E-25 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_4956 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.9E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_4956 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 54 71 5.9E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_4956 b1a2478387312fb65a670dc47730f730 90 PRINTS PR00107 Phosphocarrier protein signature 39 54 5.9E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_4956 b1a2478387312fb65a670dc47730f730 90 SUPERFAMILY SSF55594 1 88 2.22E-26 T 31-10-2018 IPR035895 HPr-like superfamily Y89_4956 b1a2478387312fb65a670dc47730f730 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 31-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Y89_4956 b1a2478387312fb65a670dc47730f730 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 40 55 - T 31-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Y89_4956 b1a2478387312fb65a670dc47730f730 90 Gene3D G3DSA:3.30.1340.10 1 89 7.0E-28 T 31-10-2018 IPR035895 HPr-like superfamily Y89_4956 b1a2478387312fb65a670dc47730f730 90 Pfam PF00381 PTS HPr component phosphorylation site 5 83 3.5E-26 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.1E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 Gene3D G3DSA:1.10.10.10 3 90 1.0E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 SUPERFAMILY SSF53850 90 294 2.53E-40 T 31-10-2018 Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 Pfam PF03466 LysR substrate binding domain 89 293 9.1E-42 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 Gene3D G3DSA:3.40.190.10 91 290 1.2E-55 T 31-10-2018 Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 SUPERFAMILY SSF46785 6 111 3.94E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2183 5a95f47f99389c5aef6edfdae00dab92 323 Gene3D G3DSA:3.40.190.10 164 264 1.2E-55 T 31-10-2018 Y89_0673 b9a93c85f81bbe60296eeda99b9e8b45 353 Pfam PF12048 Protein of unknown function (DUF3530) 16 341 1.2E-106 T 31-10-2018 IPR022529 Protein of unknown function DUF3530 Y89_0673 b9a93c85f81bbe60296eeda99b9e8b45 353 SUPERFAMILY SSF53474 72 319 3.47E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2622 73a1cea46acacaf1540ea6ce617c9c0b 395 Gene3D G3DSA:3.50.50.60 4 328 8.1E-87 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2622 73a1cea46acacaf1540ea6ce617c9c0b 395 Gene3D G3DSA:3.50.50.60 115 270 8.1E-87 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2622 73a1cea46acacaf1540ea6ce617c9c0b 395 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 137 1.1E-7 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_2622 73a1cea46acacaf1540ea6ce617c9c0b 395 SUPERFAMILY SSF51905 2 149 1.83E-21 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2622 73a1cea46acacaf1540ea6ce617c9c0b 395 SUPERFAMILY SSF51905 119 261 1.01E-22 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3183 55f86e3aa85446924ad177fc7d5b8c01 426 Pfam PF07690 Major Facilitator Superfamily 42 374 3.6E-38 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3183 55f86e3aa85446924ad177fc7d5b8c01 426 Gene3D G3DSA:1.20.1250.20 227 413 2.0E-17 T 31-10-2018 Y89_3183 55f86e3aa85446924ad177fc7d5b8c01 426 SUPERFAMILY SSF103473 32 414 1.57E-51 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3183 55f86e3aa85446924ad177fc7d5b8c01 426 Gene3D G3DSA:1.20.1250.20 21 212 3.6E-23 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 Pfam PF13654 AAA domain 30 540 1.5E-179 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 Gene3D G3DSA:3.40.50.300 247 453 2.8E-56 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 Gene3D G3DSA:3.40.50.300 12 168 1.6E-30 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 SUPERFAMILY SSF54211 565 757 3.07E-34 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 650 754 1.4E-7 T 31-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 Gene3D G3DSA:3.30.230.10 543 784 5.2E-91 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 6.1E-13 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 566 582 6.1E-13 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 647 666 6.1E-13 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 725 6.1E-13 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 66 85 6.1E-13 T 31-10-2018 Y89_5183 acc066799666f6d978a69d1217f3d5e6 817 SUPERFAMILY SSF52540 35 536 9.58E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3007 d38d22ac8b3ca084dc4a0e56e957cd4e 410 Gene3D G3DSA:3.40.50.970 3 408 1.2E-125 T 31-10-2018 Y89_3007 d38d22ac8b3ca084dc4a0e56e957cd4e 410 SUPERFAMILY SSF52518 4 407 1.44E-96 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3007 d38d22ac8b3ca084dc4a0e56e957cd4e 410 Pfam PF00676 Dehydrogenase E1 component 81 376 1.6E-98 T 31-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Y89_3007 d38d22ac8b3ca084dc4a0e56e957cd4e 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 5 45 1.0E-20 T 31-10-2018 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 Y89_0138 af5c54ae48a57f40bf7dc2f3759b7e3a 166 Gene3D G3DSA:2.60.40.1820 42 154 8.3E-10 T 31-10-2018 Y89_0138 af5c54ae48a57f40bf7dc2f3759b7e3a 166 SUPERFAMILY SSF117070 12 153 1.02E-30 T 31-10-2018 Y89_0138 af5c54ae48a57f40bf7dc2f3759b7e3a 166 Pfam PF03168 Late embryogenesis abundant protein 54 146 1.3E-21 T 31-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup Y89_0138 af5c54ae48a57f40bf7dc2f3759b7e3a 166 SMART SM00769 34 154 2.0E-46 T 31-10-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 Y89_1631 69c7227e9cba20c8d1d215b57362ea16 366 PIRSF PIRSF007313 1 361 4.8E-157 T 31-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 Y89_1631 69c7227e9cba20c8d1d215b57362ea16 366 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 350 1.3E-161 T 31-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 Y89_2918 0c8be67b35698556d95d47bf5aa28b8a 446 SUPERFAMILY SSF50998 39 394 4.12E-7 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y89_2918 0c8be67b35698556d95d47bf5aa28b8a 446 Pfam PF05935 Arylsulfotransferase (ASST) 103 378 1.0E-22 T 31-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 Y89_0943 70d7c969326da8657bd5b8754601d385 381 SUPERFAMILY SSF49401 242 380 2.39E-17 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_0943 70d7c969326da8657bd5b8754601d385 381 Pfam PF00419 Fimbrial protein 241 380 2.9E-6 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_0943 70d7c969326da8657bd5b8754601d385 381 Gene3D G3DSA:2.60.40.1090 241 380 1.1E-18 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 Gene3D G3DSA:3.30.420.40 1 254 3.1E-73 T 31-10-2018 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 SUPERFAMILY SSF53067 255 492 8.33E-55 T 31-10-2018 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 SUPERFAMILY SSF53067 5 255 6.05E-59 T 31-10-2018 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 PIRSF PIRSF000538 2 495 5.1E-118 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 Gene3D G3DSA:3.30.420.40 257 492 1.4E-66 T 31-10-2018 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 TIGRFAM TIGR01312 XylB: xylulokinase 6 492 1.4E-157 T 31-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 357 378 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 253 1.1E-61 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y89_2911 5e3653ca708ddf8157a194e6431df198 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 445 7.0E-32 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 SUPERFAMILY SSF81338 10 260 4.06E-78 T 31-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 TIGRFAM TIGR00861 MIP: MIP family channel proteins 16 252 6.2E-68 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 51 75 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 154 172 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 187 209 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 12 31 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 237 257 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 PRINTS PR00783 Major intrinsic protein family signature 88 107 9.8E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 Pfam PF00230 Major intrinsic protein 9 251 9.6E-66 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 Gene3D G3DSA:1.20.1080.10 5 262 6.3E-102 T 31-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y89_1445 9dce7ed55d69ecc181a95e2324138238 279 ProSitePatterns PS00221 MIP family signature. 69 77 - T 31-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82866 290 490 3.4E-53 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.2090.10 698 786 3.1E-294 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.70.1440 648 841 3.1E-294 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.70.1320 134 325 3.1E-294 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:1.20.1640.10 10 500 3.1E-294 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.70.1430 40 794 3.1E-294 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82714 183 264 3.53E-16 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_4862 06a311257129700b5136f941e5adb752 1018 Pfam PF00873 AcrB/AcrD/AcrF family 6 1002 1.1E-273 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82866 808 1003 4.19E-44 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82693 650 832 1.88E-15 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.2090.10 178 268 3.1E-294 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.1E-75 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82714 699 781 7.06E-17 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82693 553 650 4.45E-23 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:3.30.70.1430 555 647 3.1E-294 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82693 137 323 6.28E-24 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 SUPERFAMILY SSF82693 42 132 4.45E-20 T 31-10-2018 Y89_4862 06a311257129700b5136f941e5adb752 1018 Gene3D G3DSA:1.20.1640.10 501 999 3.1E-294 T 31-10-2018 Y89_2408 cea3e57397bdb3221cb1d1dab2f4890e 250 Gene3D G3DSA:1.10.10.2560 136 235 2.1E-84 T 31-10-2018 Y89_2408 cea3e57397bdb3221cb1d1dab2f4890e 250 Gene3D G3DSA:3.40.50.150 20 245 2.1E-84 T 31-10-2018 Y89_2408 cea3e57397bdb3221cb1d1dab2f4890e 250 SUPERFAMILY SSF53335 1 196 2.56E-32 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2408 cea3e57397bdb3221cb1d1dab2f4890e 250 Pfam PF08241 Methyltransferase domain 42 130 1.2E-16 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 Gene3D G3DSA:3.30.70.100 614 702 7.7E-18 T 31-10-2018 Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 SUPERFAMILY SSF82689 612 712 7.72E-12 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 SUPERFAMILY SSF50182 547 610 1.83E-12 T 31-10-2018 IPR010920 LSM domain superfamily Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 Gene3D G3DSA:2.30.30.60 563 611 8.4E-15 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 Pfam PF00924 Mechanosensitive ion channel 504 703 7.7E-39 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_5792 a1e30764fd5c10080e648b9082d47ffd 735 SUPERFAMILY SSF82861 463 545 1.44E-13 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y89_1260 e242661a03cd2f708b37e5ee2b2d5959 180 Pfam PF14437 MafB19-like deaminase 28 171 3.0E-30 T 31-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y89_1260 e242661a03cd2f708b37e5ee2b2d5959 180 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 75 112 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y89_1260 e242661a03cd2f708b37e5ee2b2d5959 180 Gene3D G3DSA:3.40.140.10 15 180 2.0E-59 T 31-10-2018 Y89_1260 e242661a03cd2f708b37e5ee2b2d5959 180 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 30 171 46.038 T 31-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Y89_1260 e242661a03cd2f708b37e5ee2b2d5959 180 SUPERFAMILY SSF53927 24 175 3.51E-55 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_0974 0ccb61718424d55f29151e92e2f99165 171 Pfam PF04608 Phosphatidylglycerophosphatase A 23 160 1.7E-52 T 31-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Y89_0974 0ccb61718424d55f29151e92e2f99165 171 PIRSF PIRSF006162 14 169 3.4E-50 T 31-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y89_0974 0ccb61718424d55f29151e92e2f99165 171 SUPERFAMILY SSF101307 17 162 3.4E-46 T 31-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 Y89_5514 896a257105377c418022aeb1d078497e 657 SMART SM00283 395 656 3.1E-60 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5514 896a257105377c418022aeb1d078497e 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 423 452 2.3E-6 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5514 896a257105377c418022aeb1d078497e 657 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 522 551 2.3E-6 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5514 896a257105377c418022aeb1d078497e 657 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 469 622 3.4E-41 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5514 896a257105377c418022aeb1d078497e 657 SUPERFAMILY SSF58104 358 657 2.35E-66 T 31-10-2018 Y89_5514 896a257105377c418022aeb1d078497e 657 Gene3D G3DSA:1.10.287.950 327 657 3.3E-67 T 31-10-2018 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 191 207 1.3E-16 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 146 168 1.3E-16 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 PRINTS PR01021 OMPA domain signature 176 191 1.3E-16 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 Pfam PF00691 OmpA family 145 240 1.1E-24 T 31-10-2018 IPR006665 OmpA-like domain Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 ProSitePatterns PS01068 OmpA-like domain. 178 222 - T 31-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 Pfam PF14346 Domain of unknown function (DUF4398) 14 113 2.4E-14 T 31-10-2018 IPR025511 Domain of unknown function DUF4398 Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 Gene3D G3DSA:3.30.1330.60 106 252 6.1E-44 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_1334 c7334f30fe12aef19c01ffca434295a5 261 SUPERFAMILY SSF103088 137 246 2.62E-39 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_1909 acec6e1e32c273b7630c1ac5f0b4fc84 219 Pfam PF05036 Sporulation related domain 143 213 1.4E-17 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 Y89_1909 acec6e1e32c273b7630c1ac5f0b4fc84 219 SUPERFAMILY SSF110997 143 215 2.09E-18 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_1909 acec6e1e32c273b7630c1ac5f0b4fc84 219 Gene3D G3DSA:3.30.70.1070 137 213 1.7E-14 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Pfam PF00364 Biotin-requiring enzyme 121 192 1.8E-23 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Pfam PF00364 Biotin-requiring enzyme 5 74 3.5E-23 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Gene3D G3DSA:2.40.50.100 2 79 1.4E-23 T 31-10-2018 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Gene3D G3DSA:2.40.50.100 120 197 3.2E-20 T 31-10-2018 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 SUPERFAMILY SSF51230 5 93 6.15E-23 T 31-10-2018 IPR011053 Single hybrid motif Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 SUPERFAMILY SSF47005 242 286 4.97E-12 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Pfam PF02817 e3 binding domain 247 282 5.6E-15 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 SUPERFAMILY SSF51230 118 212 6.41E-23 T 31-10-2018 IPR011053 Single hybrid motif Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 4 547 9.2E-267 T 31-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 SUPERFAMILY SSF52777 306 547 9.78E-80 T 31-10-2018 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 318 546 2.4E-76 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Gene3D G3DSA:4.10.320.10 247 292 1.6E-19 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 143 172 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_5688 0f378b594d9cad9d2be18caf867956c4 547 Gene3D G3DSA:3.30.559.10 305 547 3.9E-95 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_0935 7420fb900248378c2306794b899100b9 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 5.0E-5 T 31-10-2018 Y89_0935 7420fb900248378c2306794b899100b9 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0935 7420fb900248378c2306794b899100b9 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 7.5E-62 T 31-10-2018 Y89_0935 7420fb900248378c2306794b899100b9 253 SUPERFAMILY SSF51735 5 245 1.75E-77 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0935 7420fb900248378c2306794b899100b9 253 Gene3D G3DSA:3.40.50.720 1 247 1.8E-80 T 31-10-2018 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 SMART SM00342 210 293 3.9E-17 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 Gene3D G3DSA:1.10.10.60 191 302 1.7E-22 T 31-10-2018 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 7 295 1.3E-146 T 31-10-2018 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 Pfam PF02311 AraC-like ligand binding domain 32 167 8.9E-15 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 262 277 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 293 6.2E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 SUPERFAMILY SSF51182 38 120 1.42E-10 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 Pfam PF12833 Helix-turn-helix domain 216 295 1.3E-16 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 Gene3D G3DSA:2.60.120.10 37 107 2.0E-7 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0902 563137b8c026b61011cb9d096bff4c9a 303 SUPERFAMILY SSF46689 248 295 7.62E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 13 79 7.8E-30 T 31-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 176 29.764 T 31-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 90 174 3.0E-37 T 31-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 Gene3D G3DSA:3.10.20.80 8 81 3.1E-30 T 31-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 SUPERFAMILY SSF54364 11 84 3.27E-27 T 31-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 13 176 3.1E-65 T 31-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 SUPERFAMILY SSF55200 90 177 8.24E-33 T 31-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Y89_2301 1578d73ecd7c84ba980d5f57db411d21 177 Gene3D G3DSA:3.30.110.10 82 177 2.2E-37 T 31-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 Gene3D G3DSA:2.170.130.10 52 184 6.0E-27 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 701 718 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 SUPERFAMILY SSF56935 49 718 9.85E-128 T 31-10-2018 Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 Gene3D G3DSA:2.40.170.20 186 718 7.7E-100 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 718 1.4E-90 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 174 2.5E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2111 b9a0c81231b64e4f64686435b6845d56 718 Pfam PF00593 TonB dependent receptor 246 716 2.3E-54 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_4712 547a3d52f4cb279fb87faa2031abb1a1 707 Pfam PF03235 Protein of unknown function DUF262 10 225 2.8E-35 T 31-10-2018 IPR004919 Domain of unknown function DUF262 Y89_4712 547a3d52f4cb279fb87faa2031abb1a1 707 Pfam PF07510 Protein of unknown function (DUF1524) 414 556 3.6E-25 T 31-10-2018 IPR011089 Domain of unknown function DUF1524 Y89_5510 2eac24a92ca41adcd33518a15e95d470 178 SUPERFAMILY SSF55811 19 177 1.21E-34 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5510 2eac24a92ca41adcd33518a15e95d470 178 Pfam PF00293 NUDIX domain 47 156 3.1E-16 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_5510 2eac24a92ca41adcd33518a15e95d470 178 Gene3D G3DSA:3.90.79.10 11 178 1.4E-43 T 31-10-2018 Y89_5510 2eac24a92ca41adcd33518a15e95d470 178 PIRSF PIRSF017340 10 178 4.9E-77 T 31-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 Gene3D G3DSA:1.20.120.260 95 229 3.6E-57 T 31-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 SUPERFAMILY SSF47233 95 229 2.35E-52 T 31-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 Pfam PF03496 ADP-ribosyltransferase exoenzyme 243 428 1.7E-37 T 31-10-2018 IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 212 229 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 23 36 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 84 101 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 129 146 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 39 56 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 178 196 5.0E-40 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 Gene3D G3DSA:3.90.176.10 263 421 4.0E-19 T 31-10-2018 Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 Pfam PF03545 Yersinia virulence determinant (YopE) 129 198 1.2E-32 T 31-10-2018 IPR014773 Virulence factor YopE, GAP domain Y89_1183 73a767bf3eea9d6583466d11580dcb3a 453 SUPERFAMILY SSF56399 233 423 6.17E-36 T 31-10-2018 Y89_5196 bcf601e7e909854c37fa0fdfda3c901c 478 SUPERFAMILY SSF56935 36 478 3.48E-84 T 31-10-2018 Y89_5196 bcf601e7e909854c37fa0fdfda3c901c 478 Gene3D G3DSA:2.40.160.60 36 478 8.2E-176 T 31-10-2018 Y89_5196 bcf601e7e909854c37fa0fdfda3c901c 478 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 28 478 6.6E-160 T 31-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_2407 a58169965cb7c33b005279505a2d10a6 324 SMART SM00829 11 322 1.1E-13 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_2407 a58169965cb7c33b005279505a2d10a6 324 Gene3D G3DSA:3.40.50.720 123 268 2.2E-97 T 31-10-2018 Y89_2407 a58169965cb7c33b005279505a2d10a6 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 1.9E-6 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_2407 a58169965cb7c33b005279505a2d10a6 324 Gene3D G3DSA:3.90.180.10 12 318 2.2E-97 T 31-10-2018 Y89_2407 a58169965cb7c33b005279505a2d10a6 324 SUPERFAMILY SSF51735 112 270 7.78E-38 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2407 a58169965cb7c33b005279505a2d10a6 324 SUPERFAMILY SSF50129 10 141 1.35E-33 T 31-10-2018 IPR011032 GroES-like superfamily Y89_2407 a58169965cb7c33b005279505a2d10a6 324 Pfam PF00107 Zinc-binding dehydrogenase 151 256 5.0E-20 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_1695 0a830746150898b111fa137b9596b31b 267 SUPERFAMILY SSF52540 4 234 5.53E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1695 0a830746150898b111fa137b9596b31b 267 Gene3D G3DSA:3.40.50.300 1 252 7.3E-50 T 31-10-2018 Y89_1695 0a830746150898b111fa137b9596b31b 267 SMART SM00382 28 224 3.4E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1695 0a830746150898b111fa137b9596b31b 267 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1695 0a830746150898b111fa137b9596b31b 267 Pfam PF00005 ABC transporter 19 174 2.0E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 116 130 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 SMART SM00363 14 76 1.0E-7 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 82 244 9.6E-54 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 Pfam PF01479 S4 domain 15 59 2.0E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 Gene3D G3DSA:3.10.290.10 12 69 2.5E-20 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 Pfam PF00849 RNA pseudouridylate synthase 78 209 6.2E-15 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 SUPERFAMILY SSF55120 77 247 2.28E-42 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 Gene3D G3DSA:3.30.70.1560 140 231 2.0E-49 T 31-10-2018 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 SUPERFAMILY SSF55174 13 106 5.05E-14 T 31-10-2018 Y89_1837 b42024943cc3fb3485ab3616fcbb42de 386 Gene3D G3DSA:3.30.70.580 80 240 2.0E-49 T 31-10-2018 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 87 99 - T 31-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 Gene3D G3DSA:3.90.120.10 296 401 3.0E-18 T 31-10-2018 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 Gene3D G3DSA:3.40.50.150 11 224 4.4E-45 T 31-10-2018 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 Pfam PF00145 C-5 cytosine-specific DNA methylase 21 407 1.5E-48 T 31-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 22 38 2.7E-7 T 31-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 134 148 2.7E-7 T 31-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 186 199 2.7E-7 T 31-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Y89_6400 6e8039bb4cbb8d6a07698b43c4936fc3 417 SUPERFAMILY SSF53335 21 410 9.04E-66 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.220.120 4 66 3.9E-29 T 31-10-2018 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88946 115 450 7.72E-105 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 379 604 1.2E-37 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 4.7E-13 T 31-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04545 Sigma-70, region 4 551 604 1.0E-18 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 379 615 2.8E-122 T 31-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04542 Sigma-70 region 2 383 452 1.7E-21 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04539 Sigma-70 region 3 462 538 7.3E-30 T 31-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 407 420 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88659 513 615 9.16E-27 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 616 46.887 T 31-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 SUPERFAMILY SSF88659 456 529 1.0E-20 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF04546 Sigma-70, non-essential region 139 352 3.1E-65 T 31-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Pfam PF03979 Sigma-70 factor, region 1.1 6 83 6.6E-30 T 31-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.10.10 533 617 1.8E-36 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 576 591 6.5E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 591 602 6.5E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 407 420 6.5E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 431 439 6.5E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 PRINTS PR00046 Major sigma-70 factor signature 555 567 6.5E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.601.10 113 452 1.4E-137 T 31-10-2018 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 576 602 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0648 f4e3bef0593c9fb7908f78fefc3d7c60 617 Gene3D G3DSA:1.10.10.10 456 532 1.8E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2374 3f87a0c02dc9767b0fbb641792e5c61b 159 Gene3D G3DSA:1.10.10.10 2 158 1.4E-54 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2374 3f87a0c02dc9767b0fbb641792e5c61b 159 Pfam PF01638 HxlR-like helix-turn-helix 19 106 7.4E-25 T 31-10-2018 IPR002577 Helix-turn-helix, HxlR type Y89_2374 3f87a0c02dc9767b0fbb641792e5c61b 159 SUPERFAMILY SSF46785 7 145 2.55E-44 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 363 41.293 T 31-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 296 325 - T 31-10-2018 IPR030390 RNA methyltransferase TrmA, active site Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 363 6.4E-178 T 31-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 345 355 - T 31-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 Gene3D G3DSA:3.40.50.150 13 359 2.2E-129 T 31-10-2018 Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 Gene3D G3DSA:3.40.1350.30 45 186 2.2E-129 T 31-10-2018 Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 SUPERFAMILY SSF53335 10 362 1.28E-57 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5332 2050b8b45245df40236d6efa7fde2f37 363 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 363 2.8E-171 T 31-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:1.10.150.20 243 328 2.4E-37 T 31-10-2018 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 SMART SM00662 23 233 2.2E-109 T 31-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF56553 53 177 7.59E-42 T 31-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:3.30.1360.10 19 226 2.9E-83 T 31-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 1.1E-23 T 31-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF55257 6 232 4.51E-30 T 31-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 7.3E-110 T 31-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 35.081 T 31-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 243 307 3.3E-24 T 31-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 155 4.4E-25 T 31-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 328 1.0E-36 T 31-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 Gene3D G3DSA:2.170.120.12 53 176 2.9E-83 T 31-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_0784 d59065b8ad2b988fdb7db42eafde225b 333 SUPERFAMILY SSF47789 250 323 8.89E-26 T 31-10-2018 Y89_3206 aa7b65721454368837f42c847529b403 574 SUPERFAMILY SSF53067 13 340 7.99E-15 T 31-10-2018 Y89_3206 aa7b65721454368837f42c847529b403 574 Pfam PF02543 Carbamoyltransferase N-terminus 4 337 3.3E-50 T 31-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 Y89_3206 aa7b65721454368837f42c847529b403 574 Gene3D G3DSA:3.30.420.40 13 337 6.8E-75 T 31-10-2018 Y89_3206 aa7b65721454368837f42c847529b403 574 Gene3D G3DSA:3.90.870.20 352 560 1.2E-59 T 31-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily Y89_3206 aa7b65721454368837f42c847529b403 574 Pfam PF16861 Carbamoyltransferase C-terminus 390 559 3.2E-53 T 31-10-2018 IPR031730 Carbamoyltransferase, C-terminal Y89_3206 aa7b65721454368837f42c847529b403 574 Gene3D G3DSA:3.30.420.350 132 330 6.8E-75 T 31-10-2018 Y89_3729 944f76a46e2c03ebe17d022b28d90fdf 158 Pfam PF12975 Domain of unknown function (DUF3859) 28 157 3.8E-45 T 31-10-2018 IPR024331 Domain of unknown function DUF3859 Y89_3729 944f76a46e2c03ebe17d022b28d90fdf 158 Gene3D G3DSA:2.60.40.2390 53 158 1.7E-44 T 31-10-2018 Y89_0439 a14dad603266809511c8e891166f48f0 264 Gene3D G3DSA:1.10.10.60 214 263 3.3E-10 T 31-10-2018 Y89_0439 a14dad603266809511c8e891166f48f0 264 Pfam PF02311 AraC-like ligand binding domain 12 141 1.8E-21 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_0439 a14dad603266809511c8e891166f48f0 264 Pfam PF12833 Helix-turn-helix domain 183 260 9.6E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0439 a14dad603266809511c8e891166f48f0 264 SMART SM00342 177 259 7.2E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0439 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF46689 213 261 4.48E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0439 a14dad603266809511c8e891166f48f0 264 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 167 206 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_0439 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF51215 21 144 2.48E-15 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_0439 a14dad603266809511c8e891166f48f0 264 Gene3D G3DSA:1.10.10.60 160 213 7.4E-16 T 31-10-2018 Y89_0439 a14dad603266809511c8e891166f48f0 264 SUPERFAMILY SSF46689 161 211 8.51E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5579 4fd27d286117689be0e232fdecef9595 238 PIRSF PIRSF039137 1 238 2.8E-101 T 31-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Y89_5579 4fd27d286117689be0e232fdecef9595 238 SUPERFAMILY SSF52540 5 235 5.75E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5579 4fd27d286117689be0e232fdecef9595 238 Gene3D G3DSA:3.40.50.300 2 238 7.7E-63 T 31-10-2018 Y89_5579 4fd27d286117689be0e232fdecef9595 238 Pfam PF00005 ABC transporter 21 165 4.0E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5579 4fd27d286117689be0e232fdecef9595 238 SMART SM00382 30 221 6.0E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5579 4fd27d286117689be0e232fdecef9595 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF04205 FMN-binding domain 85 172 1.5E-6 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 SMART SM00900 82 175 1.5E-13 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 PIRSF PIRSF036354 1 715 0.0 T 31-10-2018 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF12801 4Fe-4S binding domain 496 542 6.3E-15 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 Pfam PF12801 4Fe-4S binding domain 597 643 9.5E-6 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_1618 1c3a66e8573483ab904cec1d41248c52 715 SUPERFAMILY SSF54862 513 677 2.96E-6 T 31-10-2018 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 41.259 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.0E-30 T 31-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 SUPERFAMILY SSF55681 116 423 2.49E-102 T 31-10-2018 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Gene3D G3DSA:3.30.930.10 105 426 3.7E-120 T 31-10-2018 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Gene3D G3DSA:1.10.287.40 1 104 1.2E-21 T 31-10-2018 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 7.7E-34 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 7.7E-34 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 7.7E-34 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 7.7E-34 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 7.7E-34 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 218 402 4.5E-36 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 2.3E-172 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 PIRSF PIRSF001529 1 426 3.6E-180 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Y89_2476 e47cd8c6ae3c2b3b6ce4cdd57f7c333a 426 SUPERFAMILY SSF46589 1 112 6.28E-31 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Y89_4789 3d3273528061eb9a3fe937ab0d3438eb 303 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 120 234 6.0E-30 T 31-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain Y89_4789 3d3273528061eb9a3fe937ab0d3438eb 303 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 12 300 3.9E-64 T 31-10-2018 IPR017592 Pilus assembly, Flp-type CpaB Y89_4789 3d3273528061eb9a3fe937ab0d3438eb 303 Pfam PF08666 SAF domain 57 116 1.1E-7 T 31-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y89_4789 3d3273528061eb9a3fe937ab0d3438eb 303 SMART SM00858 56 116 3.8E-8 T 31-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:2.40.30.170 297 343 2.0E-10 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:2.40.50.100 261 296 2.0E-10 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:2.40.30.170 53 64 9.2E-6 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Pfam PF13437 HlyD family secretion protein 261 389 1.3E-13 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:1.10.287.470 207 254 2.0E-10 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 272 293 7.1E-15 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 305 329 7.1E-15 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 7.1E-15 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 418 7.1E-15 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:1.10.287.470 99 174 9.2E-6 T 31-10-2018 Y89_0880 cb6c6ee3b325386b802d314621d060ad 418 Gene3D G3DSA:2.40.50.100 65 98 9.2E-6 T 31-10-2018 Y89_0478 eb5d23adf3fe34698e915be419258518 174 Pfam PF05618 Putative ATP-dependant zinc protease 30 166 5.2E-49 T 31-10-2018 Y89_0478 eb5d23adf3fe34698e915be419258518 174 Gene3D G3DSA:2.40.70.10 28 157 2.8E-37 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_0478 eb5d23adf3fe34698e915be419258518 174 SUPERFAMILY SSF50630 31 163 3.75E-36 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_5289 e2a8ef443277e3c2811f12804e369e0c 150 Pfam PF00583 Acetyltransferase (GNAT) family 29 122 2.9E-16 T 31-10-2018 IPR000182 GNAT domain Y89_5289 e2a8ef443277e3c2811f12804e369e0c 150 SUPERFAMILY SSF55729 5 148 6.92E-35 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5289 e2a8ef443277e3c2811f12804e369e0c 150 Gene3D G3DSA:3.40.630.30 6 149 1.9E-42 T 31-10-2018 Y89_5289 e2a8ef443277e3c2811f12804e369e0c 150 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 144 2.5E-48 T 31-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 Y89_4266 b4fb885ed23b06f0c7bd473723117380 253 SUPERFAMILY SSF53335 50 218 1.14E-28 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4266 b4fb885ed23b06f0c7bd473723117380 253 Gene3D G3DSA:3.40.50.150 10 221 9.5E-28 T 31-10-2018 Y89_4266 b4fb885ed23b06f0c7bd473723117380 253 Pfam PF13847 Methyltransferase domain 70 187 1.5E-18 T 31-10-2018 IPR025714 Methyltransferase domain Y89_4248 1540091c5d87fbf5a6d106189734b839 237 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 55 222 9.0E-14 T 31-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Y89_4248 1540091c5d87fbf5a6d106189734b839 237 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 236 3.5E-73 T 31-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.8E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.8E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.8E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 2.8E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 Gene3D G3DSA:3.40.50.12740 9 213 6.2E-43 T 31-10-2018 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 SMART SM00448 9 125 2.2E-12 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 Pfam PF00072 Response regulator receiver domain 11 125 3.7E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 SUPERFAMILY SSF52172 9 131 9.68E-19 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 SUPERFAMILY SSF46894 146 212 4.76E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2823 c7f03d36c1b16d3294e770e365ddb8d7 213 SMART SM00421 151 208 1.2E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:2.40.420.20 36 351 1.8E-73 T 31-10-2018 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:2.40.30.170 41 279 1.8E-73 T 31-10-2018 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 6.7E-76 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:1.10.287.470 91 163 1.8E-73 T 31-10-2018 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 Gene3D G3DSA:2.40.50.100 57 203 1.8E-73 T 31-10-2018 Y89_1349 cf51a9a56bb4f549b892e31922692964 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 262 2.5E-20 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_1349 cf51a9a56bb4f549b892e31922692964 367 SUPERFAMILY SSF111369 47 276 3.53E-24 T 31-10-2018 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 SUPERFAMILY SSF53681 111 257 1.31E-37 T 31-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 72 80 - T 31-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 TIGRFAM TIGR00067 glut_race: glutamate racemase 8 246 1.8E-65 T 31-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 Gene3D G3DSA:3.40.50.1860 8 249 8.9E-86 T 31-10-2018 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 217 4.3E-37 T 31-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 Hamap MF_00258 Glutamate racemase [murI]. 6 257 37.126 T 31-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 182 192 - T 31-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 Gene3D G3DSA:3.40.50.1860 98 209 8.9E-86 T 31-10-2018 Y89_5273 d40a0df3071453aa4520b1ef807b6275 265 SUPERFAMILY SSF53681 8 109 3.6E-32 T 31-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82714 735 820 2.35E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:1.20.1640.10 524 1036 0.0 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1440 680 879 0.0 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82866 844 1040 3.01E-46 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1430 578 679 0.0 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 138 333 2.2E-28 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 41 134 4.19E-25 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.2090.10 181 278 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82866 299 499 2.75E-50 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:1.20.1640.10 10 523 0.0 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.2090.10 734 822 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82714 185 274 8.37E-21 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Pfam PF00873 AcrB/AcrD/AcrF family 3 1040 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 563 580 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 632 646 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.4E-94 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1430 40 830 0.0 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 683 870 5.49E-25 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1051 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 SUPERFAMILY SSF82693 576 682 2.14E-27 T 31-10-2018 Y89_2698 707b22c7079ac8c5f3d6fd187412a3c7 1062 Gene3D G3DSA:3.30.70.1320 135 335 0.0 T 31-10-2018 Y89_2083 a202952b92e27e153994de41e8e16af7 509 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 352 372 - T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_2083 a202952b92e27e153994de41e8e16af7 509 Pfam PF00860 Permease family 25 404 3.6E-90 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_2083 a202952b92e27e153994de41e8e16af7 509 TIGRFAM TIGR03173 pbuX: xanthine permease 27 437 1.5E-152 T 31-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 Y89_2083 a202952b92e27e153994de41e8e16af7 509 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 24 434 1.6E-100 T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_0818 4f10ad29463f98f5652a3e97672a1cfd 388 Pfam PF10282 Lactonase, 7-bladed beta-propeller 30 384 4.4E-114 T 31-10-2018 IPR019405 Lactonase, 7-bladed beta propeller Y89_0818 4f10ad29463f98f5652a3e97672a1cfd 388 Gene3D G3DSA:2.130.10.10 25 387 1.7E-111 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_0818 4f10ad29463f98f5652a3e97672a1cfd 388 SUPERFAMILY SSF50974 7 353 6.8E-51 T 31-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 Gene3D G3DSA:1.10.60.30 23 98 1.6E-30 T 31-10-2018 Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 3 168 21.511 T 31-10-2018 IPR006839 Ribosome-associated, YjgA Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 Pfam PF04751 Protein of unknown function (DUF615) 13 164 3.2E-55 T 31-10-2018 IPR006839 Ribosome-associated, YjgA Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 PIRSF PIRSF016183 1 172 9.8E-68 T 31-10-2018 IPR006839 Ribosome-associated, YjgA Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 Gene3D G3DSA:1.10.60.30 99 174 1.6E-33 T 31-10-2018 Y89_4963 f17f36632cc67bee52ecc6915dbfccf4 174 SUPERFAMILY SSF158710 24 166 3.27E-51 T 31-10-2018 IPR023153 PSPTO4464-like domain superfamily Y89_2156 03bcf0818ef6a77a21dcb29f6318811e 267 Gene3D G3DSA:3.20.20.140 1 266 1.4E-93 T 31-10-2018 Y89_2156 03bcf0818ef6a77a21dcb29f6318811e 267 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 128 138 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Y89_2156 03bcf0818ef6a77a21dcb29f6318811e 267 PIRSF PIRSF005902 1 266 1.4E-63 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_2156 03bcf0818ef6a77a21dcb29f6318811e 267 SUPERFAMILY SSF51556 3 263 3.81E-77 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2156 03bcf0818ef6a77a21dcb29f6318811e 267 Pfam PF01026 TatD related DNase 4 261 4.4E-61 T 31-10-2018 IPR001130 TatD family GO:0016788 Y89_2944 60964406ef2b0297d673ec90d1a2e6fa 295 SUPERFAMILY SSF51197 15 295 6.87E-88 T 31-10-2018 Y89_2944 60964406ef2b0297d673ec90d1a2e6fa 295 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 17 288 2.7E-66 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_2944 60964406ef2b0297d673ec90d1a2e6fa 295 Gene3D G3DSA:3.60.130.10 14 295 3.4E-87 T 31-10-2018 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 Gene3D G3DSA:3.40.190.10 93 293 3.5E-49 T 31-10-2018 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 Gene3D G3DSA:3.40.190.10 174 269 3.5E-49 T 31-10-2018 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 Pfam PF03466 LysR substrate binding domain 101 293 1.0E-20 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2709 e5a020628bb5b6683b427975e0b47211 304 SUPERFAMILY SSF53850 93 294 4.34E-37 T 31-10-2018 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 Gene3D G3DSA:1.10.10.10 2 91 4.0E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2709 e5a020628bb5b6683b427975e0b47211 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 1.2E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 SUPERFAMILY SSF46785 7 89 6.19E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2709 e5a020628bb5b6683b427975e0b47211 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 9.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 9.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2709 e5a020628bb5b6683b427975e0b47211 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 9.8E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 ProSitePatterns PS01120 Urease nickel ligands signature. 126 139 - T 31-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 Gene3D G3DSA:2.30.40.10 3 479 8.9E-298 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 SUPERFAMILY SSF51338 2 176 4.07E-63 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 SUPERFAMILY SSF51556 128 566 1.83E-202 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_5537 730ee2f33255456883206e94d5fe52e2 566 SUPERFAMILY SSF51338 417 476 2.01E-6 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 6.5E-34 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 6.5E-34 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 333 349 6.5E-34 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 294 311 6.5E-34 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 Pfam PF01979 Amidohydrolase family 124 450 3.6E-79 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 ProSitePatterns PS00145 Urease active site. 316 332 - T 31-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 1 118 2.0E-56 T 31-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 Hamap MF_01953 Urease subunit alpha [ureC]. 1 566 56.792 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 Gene3D G3DSA:3.20.20.140 128 566 8.9E-298 T 31-10-2018 Y89_5537 730ee2f33255456883206e94d5fe52e2 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 566 2.0E-292 T 31-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5709 798f237b49256ab6275094347375dad1 561 SUPERFAMILY SSF110997 474 538 9.68E-5 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_5709 798f237b49256ab6275094347375dad1 561 Gene3D G3DSA:1.10.8.60 189 205 1.4E-9 T 31-10-2018 Y89_5709 798f237b49256ab6275094347375dad1 561 Pfam PF13401 AAA domain 49 171 1.7E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5709 798f237b49256ab6275094347375dad1 561 Pfam PF05036 Sporulation related domain 475 547 2.9E-11 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 Y89_5709 798f237b49256ab6275094347375dad1 561 SUPERFAMILY SSF52540 19 246 3.88E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5709 798f237b49256ab6275094347375dad1 561 Gene3D G3DSA:3.30.70.1070 458 557 6.1E-28 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_5709 798f237b49256ab6275094347375dad1 561 Gene3D G3DSA:3.40.50.300 52 188 1.4E-9 T 31-10-2018 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 Gene3D G3DSA:2.60.120.10 8 83 1.5E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3620 afb405577b63b4ca83abfec3e80382be 278 SMART SM00342 184 267 4.1E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 SUPERFAMILY SSF46689 167 217 3.76E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 9.9E-8 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 9.9E-8 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 Pfam PF12833 Helix-turn-helix domain 191 268 3.6E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 263 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 SUPERFAMILY SSF46689 220 269 4.21E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3620 afb405577b63b4ca83abfec3e80382be 278 Gene3D G3DSA:1.10.10.60 163 277 5.5E-28 T 31-10-2018 Y89_1462 382e2586a745caa8c06a8491be6a5aed 100 Gene3D G3DSA:3.30.370.10 9 94 6.9E-22 T 31-10-2018 IPR035905 Barstar-like superfamily Y89_1462 382e2586a745caa8c06a8491be6a5aed 100 SUPERFAMILY SSF52038 11 94 4.05E-24 T 31-10-2018 IPR035905 Barstar-like superfamily Y89_1462 382e2586a745caa8c06a8491be6a5aed 100 Pfam PF01337 Barstar (barnase inhibitor) 13 90 5.0E-17 T 31-10-2018 IPR000468 Barstar (barnase inhibitor) Y89_4728 e1db92d1dd1e8eeb6bdb99de3c9b4b33 342 SUPERFAMILY SSF53448 17 229 2.06E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4728 e1db92d1dd1e8eeb6bdb99de3c9b4b33 342 Pfam PF00535 Glycosyl transferase family 2 20 179 9.6E-34 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_4728 e1db92d1dd1e8eeb6bdb99de3c9b4b33 342 Gene3D G3DSA:3.90.550.10 1 238 8.8E-61 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4111 05f0d13bc93b32fad9c86ce6a39f6ce2 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 264 5.3E-34 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_4111 05f0d13bc93b32fad9c86ce6a39f6ce2 265 SUPERFAMILY SSF52096 10 265 4.35E-61 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_4111 05f0d13bc93b32fad9c86ce6a39f6ce2 265 Gene3D G3DSA:3.90.226.10 11 238 3.3E-79 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 329 443 1.0E-15 T 31-10-2018 IPR000014 PAS domain Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 474 575 1.4E-10 T 31-10-2018 IPR000014 PAS domain Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Gene3D G3DSA:3.30.450.20 451 566 4.0E-19 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 791 3.3E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 754 772 3.3E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 PRINTS PR00344 Bacterial sensor protein C-terminal signature 736 750 3.3E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SUPERFAMILY SSF53850 37 262 2.26E-36 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Gene3D G3DSA:3.30.450.20 328 450 1.8E-22 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SUPERFAMILY SSF55785 433 566 5.39E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 260 1.0E-26 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Gene3D G3DSA:3.40.190.10 33 258 4.1E-46 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Pfam PF08447 PAS fold 476 560 2.6E-15 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00091 323 389 8.2E-4 T 31-10-2018 IPR000014 PAS domain Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00091 448 521 0.12 T 31-10-2018 IPR000014 PAS domain Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SUPERFAMILY SSF55874 671 792 5.18E-23 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00086 527 568 13.0 T 31-10-2018 IPR001610 PAC motif Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00086 396 436 2.5E-4 T 31-10-2018 IPR001610 PAC motif Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SUPERFAMILY SSF55785 335 445 3.89E-23 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00387 700 794 4.1E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Gene3D G3DSA:3.30.565.10 665 792 8.2E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Gene3D G3DSA:3.40.190.10 126 221 4.1E-46 T 31-10-2018 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 SMART SM00062 41 262 1.4E-25 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Pfam PF08448 PAS fold 330 438 5.3E-11 T 31-10-2018 IPR013656 PAS fold-4 Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 702 793 8.7E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0674 905f41cbc06b7145d2ae11136bedf222 797 Pfam PF07730 Histidine kinase 596 662 5.6E-14 T 31-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Y89_0346 9890b7856684780552bfaed4acf9be74 349 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0346 9890b7856684780552bfaed4acf9be74 349 Pfam PF08402 TOBE domain 274 347 5.8E-16 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_0346 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:3.40.50.300 4 226 2.2E-68 T 31-10-2018 Y89_0346 9890b7856684780552bfaed4acf9be74 349 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 347 1.1E-107 T 31-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Y89_0346 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:2.40.50.940 227 345 9.4E-10 T 31-10-2018 Y89_0346 9890b7856684780552bfaed4acf9be74 349 SMART SM00382 33 216 1.9E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0346 9890b7856684780552bfaed4acf9be74 349 Gene3D G3DSA:2.40.50.140 281 339 9.4E-10 T 31-10-2018 Y89_0346 9890b7856684780552bfaed4acf9be74 349 SUPERFAMILY SSF50331 241 347 2.45E-14 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0346 9890b7856684780552bfaed4acf9be74 349 SUPERFAMILY SSF52540 5 245 5.21E-83 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0346 9890b7856684780552bfaed4acf9be74 349 Pfam PF00005 ABC transporter 24 165 4.6E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 Pfam PF04055 Radical SAM superfamily 16 182 5.1E-20 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 13 346 3.6E-118 T 31-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 SMART SM00729 11 227 4.3E-57 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 Pfam PF06969 HemN C-terminal domain 310 372 4.2E-13 T 31-10-2018 IPR010723 HemN, C-terminal Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 Gene3D G3DSA:3.80.30.20 2 303 1.5E-98 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y89_0408 64fee27aa99b8b1471834c2556f98c1f 384 SUPERFAMILY SSF102114 10 383 3.53E-107 T 31-10-2018 Y89_6026 8fc7da7b36b522a18c8346c659b58c58 654 Gene3D G3DSA:1.10.443.10 381 578 7.7E-6 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_6026 8fc7da7b36b522a18c8346c659b58c58 654 SUPERFAMILY SSF56349 390 560 1.91E-11 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_0127 d0066f0568127776dab17d05a9091cd2 157 Gene3D G3DSA:1.10.10.10 2 152 7.7E-52 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0127 d0066f0568127776dab17d05a9091cd2 157 SUPERFAMILY SSF46785 6 144 3.08E-43 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0127 d0066f0568127776dab17d05a9091cd2 157 Pfam PF01638 HxlR-like helix-turn-helix 19 104 4.0E-23 T 31-10-2018 IPR002577 Helix-turn-helix, HxlR type Y89_0891 124ac855a645b09e1d6e9fea48424465 476 Pfam PF13746 4Fe-4S dicluster domain 223 329 4.9E-45 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_0891 124ac855a645b09e1d6e9fea48424465 476 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 276 287 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_0891 124ac855a645b09e1d6e9fea48424465 476 SUPERFAMILY SSF54862 109 364 2.58E-33 T 31-10-2018 Y89_0891 124ac855a645b09e1d6e9fea48424465 476 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 45 473 1.1E-168 T 31-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Y89_0891 124ac855a645b09e1d6e9fea48424465 476 Pfam PF12801 4Fe-4S binding domain 101 130 4.4E-5 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_0891 124ac855a645b09e1d6e9fea48424465 476 Gene3D G3DSA:2.60.40.10 360 474 1.1E-30 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0891 124ac855a645b09e1d6e9fea48424465 476 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 358 474 1.2E-27 T 31-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 SUPERFAMILY SSF53850 90 295 1.23E-42 T 31-10-2018 Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 3.4E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 Pfam PF03466 LysR substrate binding domain 89 291 5.8E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 Gene3D G3DSA:3.40.190.290 91 292 1.6E-56 T 31-10-2018 Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 Gene3D G3DSA:1.10.10.10 3 89 5.6E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3922 502a007654a21f20114eb8efb65bf6f6 309 SUPERFAMILY SSF46785 7 87 1.25E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4055 220eb0e1eaf35874070a37a0f35fb6c7 97 Gene3D G3DSA:3.10.510.20 2 76 2.0E-30 T 31-10-2018 IPR038068 YcgL-like superfamily Y89_4055 220eb0e1eaf35874070a37a0f35fb6c7 97 Hamap MF_01866 Protein YcgL [ycgL]. 3 90 26.105 T 31-10-2018 IPR027354 YcgL domain Y89_4055 220eb0e1eaf35874070a37a0f35fb6c7 97 SUPERFAMILY SSF160191 2 94 3.01E-36 T 31-10-2018 IPR038068 YcgL-like superfamily Y89_4055 220eb0e1eaf35874070a37a0f35fb6c7 97 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 4 78 1.0E-37 T 31-10-2018 IPR027354 YcgL domain Y89_4055 220eb0e1eaf35874070a37a0f35fb6c7 97 Pfam PF05166 YcgL domain 5 77 6.5E-32 T 31-10-2018 IPR027354 YcgL domain Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF46689 355 436 3.76E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:1.10.10.60 379 439 7.3E-8 T 31-10-2018 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:3.40.50.2300 1 129 4.3E-38 T 31-10-2018 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF02954 Bacterial regulatory protein, Fis family 394 433 1.1E-6 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF52172 5 187 1.85E-43 T 31-10-2018 IPR011006 CheY-like superfamily Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:3.40.50.300 130 315 3.0E-62 T 31-10-2018 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF00072 Response regulator receiver domain 5 113 7.0E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 SMART SM00448 3 114 1.0E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 SMART SM00382 164 307 4.2E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Pfam PF00158 Sigma-54 interaction domain 145 310 4.5E-67 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 Gene3D G3DSA:1.10.8.60 316 378 2.5E-18 T 31-10-2018 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 SUPERFAMILY SSF52540 144 373 4.49E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_6251 2ee032b71f1432ca04bf81882ebc8ead 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_2026 ca502cf4876a491e6d2e83106cecc530 333 SUPERFAMILY SSF143631 20 325 3.4E-95 T 31-10-2018 IPR003374 ApbE-like superfamily Y89_2026 ca502cf4876a491e6d2e83106cecc530 333 PIRSF PIRSF006268 12 325 8.4E-84 T 31-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Y89_2026 ca502cf4876a491e6d2e83106cecc530 333 Pfam PF02424 ApbE family 26 306 9.9E-81 T 31-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Y89_2026 ca502cf4876a491e6d2e83106cecc530 333 Gene3D G3DSA:3.10.520.20 11 332 6.7E-120 T 31-10-2018 Y89_0057 fc1359f4bc5015b607877001cb893acb 221 Gene3D G3DSA:3.40.50.10610 26 190 2.9E-66 T 31-10-2018 Y89_0057 fc1359f4bc5015b607877001cb893acb 221 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 15 214 7.5E-95 T 31-10-2018 IPR008517 Protein of unknown function DUF799 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 PIRSF PIRSF005261 1 287 6.5E-77 T 31-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:1.10.287.480 180 227 3.8E-21 T 31-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 SUPERFAMILY SSF118352 226 285 3.01E-18 T 31-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 Pfam PF01430 Hsp33 protein 5 276 1.1E-82 T 31-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:3.90.1280.10 228 287 1.7E-21 T 31-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 287 32.192 T 31-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 SUPERFAMILY SSF64397 4 234 7.72E-70 T 31-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Y89_5880 4cc0f96136abef540f07c62c4e11ab6a 297 Gene3D G3DSA:3.55.30.10 1 173 4.8E-59 T 31-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 SMART SM00382 299 490 1.0E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 SMART SM00382 33 264 2.7E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 Pfam PF00005 ABC transporter 291 434 3.3E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 Pfam PF00005 ABC transporter 25 171 9.0E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 SUPERFAMILY SSF52540 266 498 7.1E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 Gene3D G3DSA:3.40.50.300 5 252 3.2E-62 T 31-10-2018 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 Gene3D G3DSA:3.40.50.300 267 511 3.5E-63 T 31-10-2018 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 SUPERFAMILY SSF52540 11 235 1.25E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5919 b8553ef9cf2871c1894181d951c8777d 918 Pfam PF12698 ABC-2 family transporter protein 570 910 6.9E-43 T 31-10-2018 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 Pfam PF12833 Helix-turn-helix domain 252 329 7.9E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 SMART SM00342 245 328 1.7E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 Gene3D G3DSA:1.10.10.60 228 333 2.4E-26 T 31-10-2018 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 6.1E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 6.1E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 SUPERFAMILY SSF46689 281 330 1.43E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4171 0eda2b1763a91bf1579b93b903a8368d 333 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 203 4.0E-48 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_2137 0517af3682017b94a26d5914bf1970d3 207 SUPERFAMILY SSF46689 20 100 1.55E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2137 0517af3682017b94a26d5914bf1970d3 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 41 72 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_2137 0517af3682017b94a26d5914bf1970d3 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 74 5.1E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2137 0517af3682017b94a26d5914bf1970d3 207 Gene3D G3DSA:1.10.357.10 8 207 4.5E-73 T 31-10-2018 Y89_2137 0517af3682017b94a26d5914bf1970d3 207 SUPERFAMILY SSF48498 96 204 4.54E-14 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2137 0517af3682017b94a26d5914bf1970d3 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 8.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2137 0517af3682017b94a26d5914bf1970d3 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 8.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 Gene3D G3DSA:3.40.50.300 3 222 1.2E-65 T 31-10-2018 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 PIRSF PIRSF006755 1 226 1.3E-76 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 176 1.8E-44 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 Pfam PF13500 AAA domain 3 211 1.4E-35 T 31-10-2018 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 218 29.0 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Y89_0525 7bbfbc897cd1250ff324e04bf0133c62 228 SUPERFAMILY SSF52540 1 214 6.02E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 SMART SM01360 867 957 2.1E-26 T 31-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 657 802 2.4E-13 T 31-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 SMART SM01359 656 802 1.1E-26 T 31-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Gene3D G3DSA:2.60.40.1930 343 442 6.0E-8 T 31-10-2018 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Pfam PF00207 Alpha-2-macroglobulin family 867 954 1.4E-23 T 31-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Gene3D G3DSA:1.50.10.20 1049 1340 2.3E-11 T 31-10-2018 Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 SUPERFAMILY SSF48239 1053 1157 3.92E-14 T 31-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1055 1077 2.6E-4 T 31-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming Y89_4979 9b2db27bb3a9ae8afa533493beffa4f8 1526 Pfam PF01835 MG2 domain 342 438 4.6E-19 T 31-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 156 1.0E-59 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 63 4.2E-20 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 SUPERFAMILY SSF52374 1 156 4.29E-47 T 31-10-2018 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 SMART SM00764 12 153 0.0096 T 31-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 94 1.0E-5 T 31-10-2018 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 Pfam PF01467 Cytidylyltransferase-like 5 133 7.9E-24 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 36.504 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 Gene3D G3DSA:3.40.50.620 1 159 2.4E-59 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 2.6E-50 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 2.6E-50 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 2.6E-50 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 2.6E-50 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_0384 78e6ca3073c342d1ff05d89bf42d4dc8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 2.6E-50 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Y89_1693 385f902cc19544918938f951d5c3d728 256 SUPERFAMILY SSF161098 61 243 1.18E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1693 385f902cc19544918938f951d5c3d728 256 Gene3D G3DSA:1.10.3720.10 52 254 1.8E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1693 385f902cc19544918938f951d5c3d728 256 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 9 253 9.6E-74 T 31-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 Y89_1693 385f902cc19544918938f951d5c3d728 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 250 3.1E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 SUPERFAMILY SSF56672 2 234 1.42E-93 T 31-10-2018 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 SUPERFAMILY SSF100879 242 348 1.35E-22 T 31-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Gene3D G3DSA:1.10.150.20 166 228 1.4E-19 T 31-10-2018 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Gene3D G3DSA:3.30.1490.100 238 349 5.9E-23 T 31-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Gene3D G3DSA:3.30.70.270 4 164 5.5E-64 T 31-10-2018 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Gene3D G3DSA:2.30.40.20 21 73 5.5E-64 T 31-10-2018 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Hamap MF_01113 DNA polymerase IV [dinB]. 1 348 37.867 T 31-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Pfam PF00817 impB/mucB/samB family 7 154 1.4E-52 T 31-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y89_4436 c92f4b1a3d3042a9dafbc74175013fea 349 Pfam PF11798 IMS family HHH motif 169 197 8.7E-6 T 31-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF04542 Sigma-70 region 2 55 123 1.1E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF00140 Sigma-70 factor, region 1.2 17 41 6.9E-6 T 31-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 282 2.9E-124 T 31-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 6.8E-18 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 6.8E-18 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 78 91 6.8E-18 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 PRINTS PR00046 Major sigma-70 factor signature 233 245 6.8E-18 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Gene3D G3DSA:1.20.120.1810 22 123 6.8E-28 T 31-10-2018 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 SUPERFAMILY SSF88946 15 123 2.09E-39 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Gene3D G3DSA:1.20.140.160 140 283 3.9E-13 T 31-10-2018 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 54.249 T 31-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 280 1.3E-31 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 SUPERFAMILY SSF88659 197 282 3.18E-18 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 Pfam PF04545 Sigma-70, region 4 229 279 1.1E-15 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_0398 d40ecc598d4fb6cca09f5e79fe0e32bb 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 2.1E-10 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:2.40.30.10 189 288 2.8E-33 T 31-10-2018 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.30.70.870 289 370 4.5E-37 T 31-10-2018 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.40.50.300 3 188 3.6E-70 T 31-10-2018 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF54980 403 496 4.65E-24 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 598 2.7E-295 T 31-10-2018 IPR006297 Elongation factor 4 GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 8.6E-51 T 31-10-2018 IPR013842 GTP-binding protein LepA, C-terminal Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 8.8E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 8.8E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 8.8E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 8.8E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 8.8E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF54980 295 373 1.47E-18 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.30.70.3380 371 481 6.3E-37 T 31-10-2018 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Gene3D G3DSA:3.30.70.2570 482 556 2.6E-34 T 31-10-2018 IPR038363 LepA, C-terminal domain superfamily Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 1.6E-51 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 175 3.0E-18 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Pfam PF00679 Elongation factor G C-terminus 402 487 7.4E-19 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 SUPERFAMILY SSF52540 3 235 5.7E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4591 e2fbd012fd7dcc8c3de2da414169ebe4 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 302.884 T 31-10-2018 IPR006297 Elongation factor 4 GO:0005525 Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 4.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 4.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 SUPERFAMILY SSF51735 6 253 1.18E-78 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 Gene3D G3DSA:3.40.50.720 1 254 2.2E-81 T 31-10-2018 Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 253 2.9E-60 T 31-10-2018 Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 196 0.0052 T 31-10-2018 Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2330 a77880b0553b32b0c46cc10c59fba0e8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82866 299 506 2.62E-34 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.2090.10 727 820 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82714 192 274 9.29E-17 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82693 579 668 2.56E-6 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82714 726 817 3.79E-17 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.70.1320 135 333 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82693 155 333 8.72E-21 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.5E-20 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Pfam PF00873 AcrB/AcrD/AcrF family 5 1035 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.70.1430 570 675 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:1.20.1640.10 15 517 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.2090.10 189 280 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82693 42 127 5.49E-24 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 SUPERFAMILY SSF82866 814 1039 1.19E-58 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.70.1440 676 878 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:1.20.1640.10 518 1033 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 Gene3D G3DSA:3.30.70.1430 42 828 0.0 T 31-10-2018 Y89_2672 d8b16f1557586523997fc2b11a3afe2b 1051 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 31-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Pfam PF00994 Probable molybdopterin binding domain 197 320 3.1E-22 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 SUPERFAMILY SSF53218 182 327 2.75E-38 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 SMART SM00852 185 322 1.1E-35 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Pfam PF03453 MoeA N-terminal region (domain I and II) 13 172 2.7E-46 T 31-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Gene3D G3DSA:2.170.190.11 55 146 2.3E-119 T 31-10-2018 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Gene3D G3DSA:2.40.340.10 332 389 2.3E-119 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 SUPERFAMILY SSF63867 332 403 9.94E-13 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Gene3D G3DSA:3.90.105.10 32 179 2.3E-119 T 31-10-2018 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 SUPERFAMILY SSF63882 11 181 2.09E-51 T 31-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Gene3D G3DSA:3.40.980.10 180 331 2.3E-119 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1109 7b56f01ef4c00f46ab341fb7ff310337 407 Pfam PF03454 MoeA C-terminal region (domain IV) 336 402 1.6E-14 T 31-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 SUPERFAMILY SSF46785 4 81 6.56E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:1.10.10.10 9 73 2.1E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 Pfam PF03466 LysR substrate binding domain 92 292 1.0E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:3.40.190.10 103 288 5.2E-55 T 31-10-2018 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 Gene3D G3DSA:3.40.190.10 163 261 5.2E-55 T 31-10-2018 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 SUPERFAMILY SSF53850 94 295 3.8E-39 T 31-10-2018 Y89_0469 47bf9a947eae5e36e9634e18c9de28ff 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.1E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2866 9d06b633d8c8ea2c763b0874acc4d0fc 389 SMART SM00382 147 303 3.6E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2866 9d06b633d8c8ea2c763b0874acc4d0fc 389 SUPERFAMILY SSF52540 134 379 5.2E-13 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2866 9d06b633d8c8ea2c763b0874acc4d0fc 389 Pfam PF13401 AAA domain 146 284 1.5E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2866 9d06b633d8c8ea2c763b0874acc4d0fc 389 Gene3D G3DSA:3.40.50.300 133 299 1.1E-8 T 31-10-2018 Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 SUPERFAMILY SSF46785 3 113 5.45E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 Gene3D G3DSA:1.10.10.10 3 89 1.3E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.0E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 Gene3D G3DSA:3.40.190.290 92 295 1.1E-63 T 31-10-2018 Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 Pfam PF03466 LysR substrate binding domain 91 296 1.2E-47 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2766 3276a700633affdb8ef037f42fe01c2e 304 SUPERFAMILY SSF53850 90 297 2.17E-47 T 31-10-2018 Y89_1270 ce70cf95c596ce5c328024196225289d 247 SMART SM00866 104 240 2.1E-33 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1270 ce70cf95c596ce5c328024196225289d 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 84 9.4E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1270 ce70cf95c596ce5c328024196225289d 247 Pfam PF07702 UTRA domain 106 240 4.3E-34 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1270 ce70cf95c596ce5c328024196225289d 247 SUPERFAMILY SSF46785 16 87 1.13E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1270 ce70cf95c596ce5c328024196225289d 247 Gene3D G3DSA:3.40.1410.10 86 247 3.8E-40 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1270 ce70cf95c596ce5c328024196225289d 247 SUPERFAMILY SSF64288 72 247 4.4E-44 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1270 ce70cf95c596ce5c328024196225289d 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.9E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1270 ce70cf95c596ce5c328024196225289d 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.9E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1270 ce70cf95c596ce5c328024196225289d 247 Gene3D G3DSA:1.10.10.10 12 85 1.5E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1270 ce70cf95c596ce5c328024196225289d 247 SMART SM00345 25 84 5.8E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 Pfam PF12146 Serine aminopeptidase, S33 67 297 2.1E-30 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 253 267 1.1E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 111 1.1E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 145 158 1.1E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 Gene3D G3DSA:3.40.50.1820 49 311 1.0E-34 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0327 6537e1d018ca979b3e6e99fe119757b9 313 SUPERFAMILY SSF53474 53 296 1.42E-29 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 SUPERFAMILY SSF74863 31 141 9.68E-35 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Gene3D G3DSA:3.40.30.10 460 587 7.0E-25 T 31-10-2018 Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 179 357 2.3E-10 T 31-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Pfam PF11412 Disulphide bond corrector protein DsbC 32 138 8.5E-31 T 31-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 SUPERFAMILY SSF52833 482 580 5.48E-20 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Gene3D G3DSA:2.60.40.1250 23 152 5.4E-39 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 ProSitePatterns PS00194 Thioredoxin family active site. 494 512 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 586 38.443 T 31-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 Y89_2723 250fa702293fb1bb1578840a583bc6d2 589 Pfam PF13899 Thioredoxin-like 478 549 1.4E-12 T 31-10-2018 Y89_1107 c2e87b80dbc7175007bb15be503aeea5 150 Pfam PF02391 MoaE protein 6 119 2.5E-34 T 31-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Y89_1107 c2e87b80dbc7175007bb15be503aeea5 150 Gene3D G3DSA:3.90.1170.40 1 148 6.7E-50 T 31-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Y89_1107 c2e87b80dbc7175007bb15be503aeea5 150 SUPERFAMILY SSF54690 3 148 5.1E-51 T 31-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 Pfam PF07690 Major Facilitator Superfamily 245 430 2.5E-11 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 Gene3D G3DSA:1.20.1250.20 10 422 3.2E-62 T 31-10-2018 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 Pfam PF00083 Sugar (and other) transporter 16 211 2.3E-20 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 292 309 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4828 393c14a3f25d2adccdd9244b4e93e36b 439 SUPERFAMILY SSF103473 11 419 1.05E-65 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 SMART SM00448 6 122 6.1E-14 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 SMART SM00421 149 206 6.6E-14 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 Gene3D G3DSA:3.40.50.2300 3 144 4.6E-26 T 31-10-2018 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 SUPERFAMILY SSF46894 140 208 5.44E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 Pfam PF00072 Response regulator receiver domain 8 122 2.2E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 Gene3D G3DSA:1.10.10.10 145 209 2.2E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 SUPERFAMILY SSF52172 5 141 3.84E-24 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.0E-6 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.0E-6 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.0E-6 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0944 1eb56143eda35e47f66f026420d53c0d 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 3.3E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5638 308cdc569f7a7643658278042fad8b12 228 SUPERFAMILY SSF53474 24 211 1.79E-20 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5638 308cdc569f7a7643658278042fad8b12 228 Pfam PF05728 Uncharacterised protein family (UPF0227) 29 212 2.5E-70 T 31-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA Y89_5638 308cdc569f7a7643658278042fad8b12 228 Gene3D G3DSA:3.40.50.1820 28 218 1.9E-54 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 SUPERFAMILY SSF55961 168 416 3.38E-53 T 31-10-2018 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 40 65 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 91 111 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 152 178 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 85 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 112 132 1.8E-27 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 Gene3D G3DSA:2.102.10.10 53 172 9.4E-156 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 188 412 3.0E-46 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 SUPERFAMILY SSF50022 24 167 4.71E-44 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 Pfam PF00355 Rieske [2Fe-2S] domain 56 131 1.6E-16 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_6149 f83954f74eb4c7683f2645ce7c221290 429 Gene3D G3DSA:3.90.380.10 28 409 9.4E-156 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.10 52 426 3.1E-157 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 235 504 1.45E-63 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF56801 3036 3604 5.23E-149 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.40.50.12780 2004 2411 4.4E-114 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.40.50.12780 507 907 1.2E-151 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.40.50.12780 3066 3468 1.0E-127 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1044 1059 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF47336 2523 2594 1.44E-20 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF56801 2008 2543 4.58E-140 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.30 1731 1989 1.2E-122 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 52 229 1.11E-54 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 2617 2790 1.22E-54 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2554 2569 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:1.10.1200.10 2520 2598 5.2E-28 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:1.10.1200.10 3582 3660 5.7E-26 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.10 1088 1256 6.3E-50 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00501 AMP-binding enzyme 517 915 1.9E-103 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00501 AMP-binding enzyme 3077 3476 8.1E-84 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00501 AMP-binding enzyme 2013 2419 2.2E-80 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF56801 478 1033 1.83E-164 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 1733 1974 4.89E-54 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 1272 1520 2.89E-43 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3218 3229 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2161 2172 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1391 1544 1.3E-48 T 31-10-2018 IPR010060 Non-ribosomal peptide synthase Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00668 Condensation domain 2616 3055 2.8E-113 T 31-10-2018 IPR001242 Condensation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00668 Condensation domain 1098 1530 6.7E-75 T 31-10-2018 IPR001242 Condensation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00668 Condensation domain 51 497 5.2E-110 T 31-10-2018 IPR001242 Condensation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00668 Condensation domain 1552 1994 8.4E-85 T 31-10-2018 IPR001242 Condensation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 1102 1266 1.56E-41 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00550 Phosphopantetheine attachment site 3593 3653 1.0E-10 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00550 Phosphopantetheine attachment site 1023 1082 1.2E-13 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF00550 Phosphopantetheine attachment site 2532 2594 1.4E-16 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF47336 1013 1082 3.66E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3097 3500 3.9E-120 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 538 939 6.2E-139 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2034 2443 1.6E-116 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 1557 1729 1.89E-42 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF52777 2796 3039 4.67E-65 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SUPERFAMILY SSF47336 3583 3656 5.1E-19 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:1.10.1200.10 1013 1085 5.8E-24 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.300.30 2412 2519 9.4E-33 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3615 3630 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.30 1257 1521 1.1E-78 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF13193 AMP-binding enzyme C-terminal domain 923 994 8.4E-10 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF13193 AMP-binding enzyme C-terminal domain 3484 3565 5.9E-12 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Pfam PF13193 AMP-binding enzyme C-terminal domain 2427 2504 2.4E-10 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.10 2616 2985 8.4E-159 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SMART SM00823 Phosphopantetheine attachment site 2530 2599 7.7E-7 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SMART SM00823 Phosphopantetheine attachment site 3591 3660 0.17 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 SMART SM00823 Phosphopantetheine attachment site 1020 1088 0.0042 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.30 2794 3041 8.4E-159 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.300.30 3469 3581 3.0E-36 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.300.30 908 1008 6.7E-31 T 31-10-2018 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 ProSitePatterns PS00455 Putative AMP-binding domain signature. 660 671 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.10 1557 1925 1.2E-122 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2799 d47faf9b1f23d8d7f49f68aba3311ec8 3680 Gene3D G3DSA:3.30.559.30 233 482 3.1E-157 T 31-10-2018 Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 Gene3D G3DSA:2.60.40.2610 611 701 2.6E-10 T 31-10-2018 Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 Pfam PF00577 Outer membrane usher protein 266 691 1.8E-22 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 Gene3D G3DSA:2.60.40.3110 246 329 6.4E-8 T 31-10-2018 Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 282 292 - T 31-10-2018 IPR018030 Fimbrial membrane usher, conserved site Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 Gene3D G3DSA:2.60.40.2070 707 786 4.3E-7 T 31-10-2018 Y89_5263 3562de3de7320cbfac35e9a6ee5388ae 790 Pfam PF13953 PapC C-terminal domain 707 768 4.5E-15 T 31-10-2018 IPR025949 PapC-like, C-terminal domain Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 Pfam PF00376 MerR family regulatory protein 11 47 2.1E-12 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 SUPERFAMILY SSF46955 10 132 3.0E-28 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 Pfam PF09278 MerR, DNA binding 52 117 8.1E-16 T 31-10-2018 IPR015358 Transcription regulator MerR, DNA binding Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 SMART SM00422 10 78 3.8E-28 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 13 35 - T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 2.9E-13 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 11 22 2.9E-13 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 22 35 2.9E-13 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 Gene3D G3DSA:1.10.1660.10 2 133 1.4E-33 T 31-10-2018 Y89_2981 b07595a8d55f6baf7101ceb045b8bfa1 156 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 9 149 2.0E-74 T 31-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Pfam PF01842 ACT domain 283 348 9.9E-11 T 31-10-2018 IPR002912 ACT domain Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Gene3D G3DSA:3.40.190.10 177 262 8.6E-59 T 31-10-2018 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 TIGRFAM TIGR01807 CM_P2: chorismate mutase 7 85 5.4E-32 T 31-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Pfam PF00800 Prephenate dehydratase 97 274 3.8E-62 T 31-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 310 317 - T 31-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Gene3D G3DSA:1.20.59.10 7 96 8.7E-30 T 31-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 SUPERFAMILY SSF55021 267 362 4.93E-28 T 31-10-2018 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Pfam PF01817 Chorismate mutase type II 11 93 1.9E-22 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 PIRSF PIRSF001500 1 365 2.8E-148 T 31-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Gene3D G3DSA:3.30.70.260 275 364 2.1E-28 T 31-10-2018 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 248 270 - T 31-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 SUPERFAMILY SSF48600 6 98 3.82E-19 T 31-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 SUPERFAMILY SSF53850 96 281 4.56E-60 T 31-10-2018 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 SMART SM00830 11 95 1.1E-26 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_1850 a86f53e3709a594dd953fe5660e80386 365 Gene3D G3DSA:3.40.190.10 99 270 8.6E-59 T 31-10-2018 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Pfam PF02938 GAD domain 310 409 7.2E-32 T 31-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 SUPERFAMILY SSF50249 2 106 7.43E-34 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 4.7E-27 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 4.7E-27 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 4.7E-27 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 4.7E-27 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.887 T 31-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 SUPERFAMILY SSF55681 109 585 1.24E-102 T 31-10-2018 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.8E-108 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 SUPERFAMILY SSF55261 292 422 4.14E-45 T 31-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 1.2E-242 T 31-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Gene3D G3DSA:2.40.50.140 1 107 5.8E-38 T 31-10-2018 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 102 1.8E-16 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Gene3D G3DSA:3.30.930.10 119 583 4.5E-202 T 31-10-2018 Y89_4392 20aa053a4e7285472b1c5f95e71fc7e8 591 Gene3D G3DSA:3.30.1360.30 274 423 4.5E-202 T 31-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Y89_4807 b5135391a2558f535146ab51707128de 335 SMART SM00382 53 194 3.4E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4807 b5135391a2558f535146ab51707128de 335 Gene3D G3DSA:1.10.8.300 222 330 2.3E-29 T 31-10-2018 Y89_4807 b5135391a2558f535146ab51707128de 335 SUPERFAMILY SSF52540 24 307 1.51E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4807 b5135391a2558f535146ab51707128de 335 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 56 186 8.7E-64 T 31-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Y89_4807 b5135391a2558f535146ab51707128de 335 PIRSF PIRSF002849 1 335 9.6E-130 T 31-10-2018 Y89_4807 b5135391a2558f535146ab51707128de 335 Gene3D G3DSA:3.40.50.300 16 219 1.1E-50 T 31-10-2018 Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 189 202 - T 31-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 Pfam PF00682 HMGL-like 2 259 2.7E-59 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 SUPERFAMILY SSF51182 400 442 6.77E-5 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 Gene3D G3DSA:2.60.120.10 367 455 3.4E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 SUPERFAMILY SSF51569 2 277 1.03E-67 T 31-10-2018 Y89_4136 1b20e1d9fdeb8115229050ed0afcb073 455 Gene3D G3DSA:3.20.20.70 1 308 2.7E-83 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5602 445d0d63298a5433fb056e824415a552 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 31-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5602 445d0d63298a5433fb056e824415a552 148 Gene3D G3DSA:3.10.430.100 62 148 5.0E-26 T 31-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Y89_5602 445d0d63298a5433fb056e824415a552 148 Gene3D G3DSA:3.40.5.10 1 50 2.2E-22 T 31-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5602 445d0d63298a5433fb056e824415a552 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 9.4E-48 T 31-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5602 445d0d63298a5433fb056e824415a552 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 1.5E-20 T 31-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5602 445d0d63298a5433fb056e824415a552 148 SUPERFAMILY SSF55658 1 56 4.53E-18 T 31-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Y89_5602 445d0d63298a5433fb056e824415a552 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 3.4E-23 T 31-10-2018 IPR020069 Ribosomal protein L9, C-terminal Y89_5602 445d0d63298a5433fb056e824415a552 148 SUPERFAMILY SSF55653 60 148 4.45E-24 T 31-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Y89_5602 445d0d63298a5433fb056e824415a552 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.083 T 31-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_2007 33a0dc92cc54cefdac279e15357ed172 124 Gene3D G3DSA:2.30.30.320 34 116 2.1E-31 T 31-10-2018 IPR037135 DUF1653-like domain superfamily Y89_2007 33a0dc92cc54cefdac279e15357ed172 124 Pfam PF07866 Protein of unknown function (DUF1653) 44 103 4.6E-30 T 31-10-2018 IPR023387 DUF1653-like domain Y89_0637 08bc26bd252c97f343a9c1da6ccf460b 81 Pfam PF03869 Arc-like DNA binding domain 4 46 6.6E-21 T 31-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Y89_0637 08bc26bd252c97f343a9c1da6ccf460b 81 SUPERFAMILY SSF47598 3 48 5.4E-15 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_0637 08bc26bd252c97f343a9c1da6ccf460b 81 Gene3D G3DSA:1.10.1220.10 1 57 2.5E-26 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 22 165 1.5E-48 T 31-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 PIRSF PIRSF000216 3 166 5.0E-52 T 31-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 Gene3D G3DSA:3.40.30.10 83 165 4.4E-24 T 31-10-2018 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 123 141 - T 31-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 Gene3D G3DSA:1.10.10.1590 13 82 1.6E-16 T 31-10-2018 Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 SUPERFAMILY SSF52833 15 165 3.58E-48 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2448 0a7ff7c8344ae362a8862645147ce861 166 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 23 165 4.7E-50 T 31-10-2018 Y89_3195 77b9ef47753ea1d84604a67e317fcaf3 468 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_3195 77b9ef47753ea1d84604a67e317fcaf3 468 Gene3D G3DSA:1.20.1740.10 17 461 6.2E-55 T 31-10-2018 Y89_3195 77b9ef47753ea1d84604a67e317fcaf3 468 Pfam PF00324 Amino acid permease 26 433 5.4E-89 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_3195 77b9ef47753ea1d84604a67e317fcaf3 468 PIRSF PIRSF006060 8 467 3.8E-66 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_1945 6597150af3235a310cd7b71c5d423115 586 Pfam PF00515 Tetratricopeptide repeat 410 441 1.6E-8 T 31-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 Y89_1945 6597150af3235a310cd7b71c5d423115 586 SUPERFAMILY SSF48452 363 477 5.2E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1945 6597150af3235a310cd7b71c5d423115 586 Gene3D G3DSA:3.40.50.410 97 288 4.1E-26 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_1945 6597150af3235a310cd7b71c5d423115 586 SUPERFAMILY SSF53300 102 233 1.09E-12 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_1945 6597150af3235a310cd7b71c5d423115 586 Pfam PF13519 von Willebrand factor type A domain 107 205 1.6E-10 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_1945 6597150af3235a310cd7b71c5d423115 586 SMART SM00028 409 442 3.9E-7 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_1945 6597150af3235a310cd7b71c5d423115 586 Gene3D G3DSA:1.25.40.10 351 506 1.1E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 Gene3D G3DSA:3.30.9.30 356 402 6.4E-19 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 SUPERFAMILY SSF51905 5 366 1.02E-65 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 SUPERFAMILY SSF54373 185 293 2.43E-31 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 Gene3D G3DSA:3.50.50.60 7 355 2.8E-146 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 Gene3D G3DSA:3.30.9.30 40 296 2.8E-146 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 Pfam PF01494 FAD binding domain 6 178 2.1E-13 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 Pfam PF01494 FAD binding domain 299 362 1.5E-9 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 317 3.5E-21 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.5E-21 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 3.5E-21 T 31-10-2018 Y89_0805 a8f288e786ce898b7fd4231f167e26d4 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 317 333 3.5E-21 T 31-10-2018 Y89_0844 21c82976454e39b5776d69c1f1a95b66 247 Pfam PF13649 Methyltransferase domain 45 135 1.8E-11 T 31-10-2018 Y89_0844 21c82976454e39b5776d69c1f1a95b66 247 Gene3D G3DSA:3.40.50.150 12 216 9.0E-40 T 31-10-2018 Y89_0844 21c82976454e39b5776d69c1f1a95b66 247 SUPERFAMILY SSF53335 6 246 2.64E-38 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0844 21c82976454e39b5776d69c1f1a95b66 247 Gene3D G3DSA:2.20.130.10 147 206 9.0E-40 T 31-10-2018 Y89_2662 df1a8bf36e0df3af185854ccb0067df5 477 SUPERFAMILY SSF111283 3 472 7.85E-95 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Y89_2662 df1a8bf36e0df3af185854ccb0067df5 477 Pfam PF01523 Putative modulator of DNA gyrase 21 321 8.9E-43 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y89_2662 df1a8bf36e0df3af185854ccb0067df5 477 Gene3D G3DSA:3.30.2290.10 6 206 2.5E-8 T 31-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF51621 461 786 1.05E-99 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 PIRSF PIRSF000854 1 791 0.0 T 31-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 780 1.4E-62 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 342 3.1E-120 T 31-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.50.30.10 359 476 1.6E-40 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF52009 347 464 5.36E-34 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.20.20.60 477 787 1.8E-101 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 786 0.0 T 31-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 31-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.30.470.20 193 356 3.5E-59 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 7.8E-6 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 7.8E-6 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 7.8E-6 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 6.2E-26 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 SUPERFAMILY SSF56059 3 384 1.77E-108 T 31-10-2018 Y89_3562 5f743bc959a0ec218f53b001fc9537aa 791 Gene3D G3DSA:3.30.1490.20 2 192 1.3E-72 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_4086 6bf2c5c8fa7e1d53041896db6b3eec60 300 SUPERFAMILY SSF103481 50 147 1.96E-11 T 31-10-2018 Y89_4086 6bf2c5c8fa7e1d53041896db6b3eec60 300 SUPERFAMILY SSF103481 214 298 4.18E-8 T 31-10-2018 Y89_4086 6bf2c5c8fa7e1d53041896db6b3eec60 300 Pfam PF00892 EamA-like transporter family 162 294 2.8E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_4086 6bf2c5c8fa7e1d53041896db6b3eec60 300 Pfam PF00892 EamA-like transporter family 22 146 5.6E-14 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Gene3D G3DSA:3.40.50.920 500 625 8.9E-43 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Gene3D G3DSA:3.40.50.970 323 494 3.6E-65 T 31-10-2018 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 SMART SM00861 324 488 8.8E-63 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF02780 Transketolase, C-terminal domain 500 616 3.8E-27 T 31-10-2018 IPR033248 Transketolase, C-terminal domain Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52518 321 508 1.23E-56 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52922 496 625 2.62E-33 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 18 289 1.2E-120 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 17 625 46.223 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 22 624 2.0E-266 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 ProSitePatterns PS00802 Transketolase signature 2. 430 446 - T 31-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 SUPERFAMILY SSF52518 15 386 7.41E-77 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0980 95205bc345d880a4f5a4a56c126d2d11 627 Pfam PF02779 Transketolase, pyrimidine binding domain 325 485 1.8E-37 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 Gene3D G3DSA:3.30.70.1070 262 338 3.3E-6 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 Gene3D G3DSA:2.40.40.10 100 193 4.9E-38 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 Pfam PF05036 Sporulation related domain 265 334 5.5E-11 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 SUPERFAMILY SSF110997 265 337 3.79E-11 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 SUPERFAMILY SSF50685 103 197 3.42E-12 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 7 192 25.649 T 31-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 102 193 1.3E-43 T 31-10-2018 IPR012997 Rare lipoprotein A Y89_1024 493d977bd3ea38d364fa1fda440cd74c 342 Pfam PF03330 Lytic transglycolase 101 189 5.1E-26 T 31-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y89_2428 32e573d66d550c07a83f9f0eeb1afb56 360 SUPERFAMILY SSF52151 48 323 1.41E-15 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_2978 c8db6f1030157a88ecc708964e33729b 296 SUPERFAMILY SSF46689 191 242 6.53E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2978 c8db6f1030157a88ecc708964e33729b 296 Pfam PF12833 Helix-turn-helix domain 214 289 8.9E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2978 c8db6f1030157a88ecc708964e33729b 296 SMART SM00342 208 291 7.7E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2978 c8db6f1030157a88ecc708964e33729b 296 SUPERFAMILY SSF46689 244 291 3.67E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2978 c8db6f1030157a88ecc708964e33729b 296 Pfam PF06719 AraC-type transcriptional regulator N-terminus 26 179 1.1E-43 T 31-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal Y89_2978 c8db6f1030157a88ecc708964e33729b 296 Gene3D G3DSA:1.10.10.60 189 295 1.3E-25 T 31-10-2018 Y89_0712 7e781825187f15a89ff041c9bda67a63 256 SMART SM00232 1 127 4.4E-5 T 31-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 Y89_0712 7e781825187f15a89ff041c9bda67a63 256 SUPERFAMILY SSF102712 1 139 1.7E-24 T 31-10-2018 Y89_0712 7e781825187f15a89ff041c9bda67a63 256 Pfam PF00877 NlpC/P60 family 119 250 1.1E-19 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y89_0712 7e781825187f15a89ff041c9bda67a63 256 SUPERFAMILY SSF54001 113 253 2.84E-14 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_0712 7e781825187f15a89ff041c9bda67a63 256 Gene3D G3DSA:3.90.1720.10 114 229 1.4E-9 T 31-10-2018 Y89_0712 7e781825187f15a89ff041c9bda67a63 256 Pfam PF14464 Prokaryotic homologs of the JAB domain 5 100 1.7E-18 T 31-10-2018 IPR028090 JAB domain, prokaryotic Y89_0712 7e781825187f15a89ff041c9bda67a63 256 Gene3D G3DSA:3.40.140.10 1 113 4.0E-21 T 31-10-2018 Y89_0729 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 92 102 1.4E-19 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_0729 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 25 43 1.4E-19 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_0729 82798b4769b956f52734b08f00ad3638 112 PRINTS PR00332 Histidine triad family signature 4 20 1.4E-19 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_0729 82798b4769b956f52734b08f00ad3638 112 SUPERFAMILY SSF54197 1 111 3.54E-40 T 31-10-2018 IPR036265 HIT-like superfamily Y89_0729 82798b4769b956f52734b08f00ad3638 112 Gene3D G3DSA:3.30.428.10 1 112 1.1E-43 T 31-10-2018 IPR036265 HIT-like superfamily Y89_0729 82798b4769b956f52734b08f00ad3638 112 ProSitePatterns PS00892 HIT domain signature. 85 103 - T 31-10-2018 IPR019808 Histidine triad, conserved site Y89_0729 82798b4769b956f52734b08f00ad3638 112 Pfam PF01230 HIT domain 11 106 8.6E-26 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_1286 f11d2c57f8c784bdf010c26e164d0942 141 Pfam PF03061 Thioesterase superfamily 31 103 2.5E-17 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_1286 f11d2c57f8c784bdf010c26e164d0942 141 Gene3D G3DSA:3.10.129.10 5 140 1.7E-39 T 31-10-2018 Y89_1286 f11d2c57f8c784bdf010c26e164d0942 141 SUPERFAMILY SSF54637 16 133 6.95E-36 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 SMART SM00345 12 71 3.3E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 SUPERFAMILY SSF46785 5 78 8.65E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 SMART SM00866 92 231 1.9E-29 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 SUPERFAMILY SSF64288 59 235 5.81E-41 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 Gene3D G3DSA:1.10.10.10 6 76 2.0E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 Pfam PF07702 UTRA domain 92 230 1.0E-37 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 Gene3D G3DSA:3.40.1410.10 82 235 1.8E-34 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 6.5E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 5.2E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1765 560f2fb4433ba7c34668749bd5b14351 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 5.2E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 SMART SM01008 223 312 4.6E-24 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 PIRSF PIRSF036389 4 769 3.5E-281 T 31-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Gene3D G3DSA:3.90.1170.50 194 306 1.7E-10 T 31-10-2018 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Gene3D G3DSA:3.30.365.10 364 456 8.9E-47 T 31-10-2018 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 36 2.4E-5 T 31-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 SUPERFAMILY SSF56003 334 762 1.57E-111 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Gene3D G3DSA:3.30.365.10 340 563 8.9E-47 T 31-10-2018 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Gene3D G3DSA:3.30.365.10 56 193 2.1E-23 T 31-10-2018 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 332 614 3.9E-28 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 628 709 9.2E-15 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 60 191 3.4E-16 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 Gene3D G3DSA:3.30.365.10 618 765 5.8E-37 T 31-10-2018 Y89_2821 34eab3ba7f7842644d5eba2cc8d887c3 771 SUPERFAMILY SSF56003 12 256 2.02E-46 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_1067 50195376e18bda26cd7b4db5fb40742f 144 Gene3D G3DSA:3.10.180.10 3 131 3.3E-39 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1067 50195376e18bda26cd7b4db5fb40742f 144 SUPERFAMILY SSF54593 8 133 5.78E-22 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1067 50195376e18bda26cd7b4db5fb40742f 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 127 6.8E-6 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 SUPERFAMILY SSF53383 28 445 2.68E-115 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 Gene3D G3DSA:3.90.1150.10 33 440 4.2E-157 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 Pfam PF00202 Aminotransferase class-III 34 443 1.5E-78 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 Gene3D G3DSA:3.40.640.10 69 351 4.2E-157 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 PIRSF PIRSF000521 197 447 1.3E-14 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0145 338d7205b4ed7087150389c7ec6c4d3d 448 PIRSF PIRSF000521 37 147 0.17 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0322 6a16a763926a27df7b16c4098fbdf5b5 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 262 1.1E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0322 6a16a763926a27df7b16c4098fbdf5b5 289 Gene3D G3DSA:1.10.3720.10 6 266 5.6E-45 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0322 6a16a763926a27df7b16c4098fbdf5b5 289 SUPERFAMILY SSF161098 3 261 3.36E-50 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4049 b65fbca51dceb730ea66810ec0e2c91c 327 PIRSF PIRSF018266 12 327 3.5E-90 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_4049 b65fbca51dceb730ea66810ec0e2c91c 327 Pfam PF16220 Domain of unknown function (DUF4880) 22 63 9.2E-12 T 31-10-2018 IPR032623 FecR, N-terminal Y89_4049 b65fbca51dceb730ea66810ec0e2c91c 327 Gene3D G3DSA:2.60.120.1440 114 249 1.1E-23 T 31-10-2018 Y89_4049 b65fbca51dceb730ea66810ec0e2c91c 327 Pfam PF04773 FecR protein 119 209 6.9E-19 T 31-10-2018 IPR006860 FecR protein Y89_4049 b65fbca51dceb730ea66810ec0e2c91c 327 Pfam PF16344 Domain of unknown function (DUF4974) 227 305 9.1E-8 T 31-10-2018 IPR032508 Protein FecR, C-terminal Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 SUPERFAMILY SSF46785 7 138 3.71E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 Gene3D G3DSA:1.10.10.10 2 133 1.1E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 Pfam PF12802 MarR family 30 89 2.9E-9 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 SMART SM00347 23 123 1.2E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 1.1E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.1E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4416 9bc5c5a0ecca7903f6c3658a63d3c5dd 186 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 1.1E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 SMART SM00859 3 122 6.3E-28 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.434 T 31-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 122 8.9E-25 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 4.3E-197 T 31-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 31-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 SUPERFAMILY SSF51735 1 147 1.16E-54 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1902 a8be0c31547178063df844cb7d4d0666 370 PIRSF PIRSF000148 1 370 2.2E-64 T 31-10-2018 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 SUPERFAMILY SSF55347 134 355 3.35E-76 T 31-10-2018 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 354 4.4E-63 T 31-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 Gene3D G3DSA:3.30.360.10 135 351 2.7E-148 T 31-10-2018 Y89_1902 a8be0c31547178063df844cb7d4d0666 370 Gene3D G3DSA:3.40.50.720 4 357 2.7E-148 T 31-10-2018 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 2.6E-21 T 31-10-2018 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 273 288 2.6E-21 T 31-10-2018 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 2.6E-21 T 31-10-2018 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 304 2.6E-21 T 31-10-2018 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 Pfam PF01494 FAD binding domain 2 306 7.6E-21 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 SUPERFAMILY SSF51905 2 362 8.46E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2501 81b6031f8a80d127de10cd07525f0dcf 382 Gene3D G3DSA:3.50.50.60 2 363 3.4E-74 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5652 1527e2bbf33793aab84189bf7f796313 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 4.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 4.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 4.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 439 4.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SMART SM00304 169 225 1.4E-4 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 322 6.3E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SMART SM00387 370 486 1.1E-41 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 484 8.5E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 35 141 5.4E-15 T 31-10-2018 IPR033414 Periplasmic sensor domain Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SUPERFAMILY SSF52172 502 620 4.84E-31 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Gene3D G3DSA:3.30.565.10 327 488 5.1E-49 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SUPERFAMILY SSF55874 312 484 1.27E-43 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Gene3D G3DSA:3.40.50.2300 495 623 4.8E-31 T 31-10-2018 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SMART SM00448 502 617 8.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Pfam PF01627 Hpt domain 653 711 7.1E-8 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SMART SM00388 258 323 1.1E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Gene3D G3DSA:1.20.1480.50 139 226 4.1E-8 T 31-10-2018 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Gene3D G3DSA:1.20.120.160 628 738 2.7E-12 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Gene3D G3DSA:1.10.287.130 227 321 2.4E-26 T 31-10-2018 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SUPERFAMILY SSF47226 632 737 1.31E-12 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 Pfam PF00072 Response regulator receiver domain 504 617 1.8E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5652 1527e2bbf33793aab84189bf7f796313 750 SUPERFAMILY SSF47384 243 321 3.73E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Pfam PF00563 EAL domain 464 699 2.4E-75 T 31-10-2018 IPR001633 EAL domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 284 446 1.6E-45 T 31-10-2018 IPR000160 GGDEF domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Pfam PF03707 Bacterial signalling protein N terminal repeat 132 184 8.3E-15 T 31-10-2018 IPR005330 MHYT domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Pfam PF03707 Bacterial signalling protein N terminal repeat 69 125 2.0E-16 T 31-10-2018 IPR005330 MHYT domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Pfam PF03707 Bacterial signalling protein N terminal repeat 202 263 1.1E-6 T 31-10-2018 IPR005330 MHYT domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 SMART SM00267 277 448 1.2E-55 T 31-10-2018 IPR000160 GGDEF domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Pfam PF00990 Diguanylate cyclase, GGDEF domain 288 444 1.5E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 SMART SM00052 458 704 1.9E-110 T 31-10-2018 IPR001633 EAL domain Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Gene3D G3DSA:3.20.20.450 462 712 1.1E-99 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 SUPERFAMILY SSF55073 293 449 4.32E-47 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 SUPERFAMILY SSF141868 463 712 4.45E-88 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1698 b2d30ec0f798a62744822ae568fe2865 726 Gene3D G3DSA:3.30.70.270 282 461 4.4E-55 T 31-10-2018 Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Pfam PF09102 Exotoxin A, targeting 277 409 3.0E-90 T 31-10-2018 IPR015186 Exotoxin A, middle domain Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 SUPERFAMILY SSF56399 420 631 1.15E-79 T 31-10-2018 Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 SUPERFAMILY SSF56864 277 419 4.97E-70 T 31-10-2018 IPR036478 Exotoxin A, middle domain superfamily Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Gene3D G3DSA:3.90.1350.10 266 423 1.3E-81 T 31-10-2018 IPR036478 Exotoxin A, middle domain superfamily Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Gene3D G3DSA:2.60.120.200 26 255 4.5E-122 T 31-10-2018 Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Pfam PF09101 Exotoxin A binding 27 275 1.9E-121 T 31-10-2018 IPR015185 Exotoxin A, binding Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Gene3D G3DSA:3.90.175.10 424 630 2.7E-106 T 31-10-2018 Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 SUPERFAMILY SSF49899 27 276 3.48E-135 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Y89_4204 ebc496c77e19a1b83ce87e1cebdfe5f0 638 Pfam PF09009 Exotoxin A catalytic 413 638 8.5E-158 T 31-10-2018 IPR015099 Exotoxin A catalytic domain GO:0047286 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 455 9.3E-91 T 31-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 Hamap MF_01983 UbiD-like decarboxylase. 4 493 51.482 T 31-10-2018 IPR032903 UbiD-like decarboxylase/ferulic acid decarboxylase 1 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 Gene3D G3DSA:3.40.1670.10 329 457 1.4E-49 T 31-10-2018 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 SUPERFAMILY SSF50475 7 314 3.61E-88 T 31-10-2018 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 13 428 1.5E-115 T 31-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Y89_0261 a33f2d7be5e4321316ec6d274b895c4f 496 SUPERFAMILY SSF143968 317 493 2.22E-31 T 31-10-2018 Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 SUPERFAMILY SSF69721 2 111 9.42E-35 T 31-10-2018 IPR025526 DsrC-like domain superfamily Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 Gene3D G3DSA:3.30.1420.10 2 39 1.1E-14 T 31-10-2018 Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 5 111 5.6E-43 T 31-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 PIRSF PIRSF006223 4 111 5.9E-33 T 31-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 Gene3D G3DSA:1.10.10.370 41 111 5.8E-24 T 31-10-2018 Y89_2480 c20170852f7434f908c4f3ff41eb573e 111 Pfam PF04358 DsrC like protein 6 111 3.6E-36 T 31-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Y89_5252 de832da0ba754cc3c9ad457f99b3591d 137 SUPERFAMILY SSF54593 1 135 1.02E-34 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5252 de832da0ba754cc3c9ad457f99b3591d 137 Gene3D G3DSA:3.10.180.10 7 137 1.1E-42 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5252 de832da0ba754cc3c9ad457f99b3591d 137 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 131 1.6E-11 T 31-10-2018 IPR028973 PhnB-like Y89_0482 c419108a5ec5d695ad8a174972d5e866 295 Pfam PF01553 Acyltransferase 73 226 6.0E-15 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_0482 c419108a5ec5d695ad8a174972d5e866 295 SMART SM00563 85 227 1.0E-19 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_0482 c419108a5ec5d695ad8a174972d5e866 295 SUPERFAMILY SSF69593 8 293 9.29E-58 T 31-10-2018 Y89_5703 4519375c0d48c198f5303e91dca2c9f4 309 SUPERFAMILY SSF51735 8 274 3.1E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5703 4519375c0d48c198f5303e91dca2c9f4 309 Gene3D G3DSA:3.40.50.720 1 307 7.9E-71 T 31-10-2018 Y89_5703 4519375c0d48c198f5303e91dca2c9f4 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 6.9E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5703 4519375c0d48c198f5303e91dca2c9f4 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 6.9E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5703 4519375c0d48c198f5303e91dca2c9f4 309 Pfam PF00106 short chain dehydrogenase 16 216 5.8E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 Gene3D G3DSA:3.40.220.10 1 160 2.8E-57 T 31-10-2018 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 495 41.305 T 31-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 SUPERFAMILY SSF53187 177 493 4.39E-126 T 31-10-2018 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 SUPERFAMILY SSF52949 1 182 3.12E-44 T 31-10-2018 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 Gene3D G3DSA:3.40.630.10 177 495 9.4E-143 T 31-10-2018 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 184 486 6.3E-127 T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 346 353 - T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 PRINTS PR00481 Cytosol aminopeptidase signature 320 341 1.1E-53 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 PRINTS PR00481 Cytosol aminopeptidase signature 342 362 1.1E-53 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 PRINTS PR00481 Cytosol aminopeptidase signature 261 278 1.1E-53 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 PRINTS PR00481 Cytosol aminopeptidase signature 370 385 1.1E-53 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 PRINTS PR00481 Cytosol aminopeptidase signature 283 304 1.1E-53 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Y89_1195 8827d28b7009952657c43b0ec1a86f13 495 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 1.2E-31 T 31-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 Gene3D G3DSA:3.40.50.2300 62 154 4.6E-25 T 31-10-2018 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 Gene3D G3DSA:1.10.260.40 1 61 8.3E-25 T 31-10-2018 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 Gene3D G3DSA:3.40.50.2300 155 329 2.7E-33 T 31-10-2018 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 SUPERFAMILY SSF53822 60 315 2.55E-52 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 SUPERFAMILY SSF47413 2 58 1.41E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 329 1.5E-132 T 31-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 246 1.6E-20 T 31-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 31-10-2018 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 50 3.3E-18 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_1464 71327d89d6129a1fb6b48f8e77b28253 329 SMART SM00354 1 73 1.8E-28 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF47384 408 502 2.55E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:3.30.450.20 271 399 1.7E-14 T 31-10-2018 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:1.10.287.130 404 500 2.4E-23 T 31-10-2018 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF00672 HAMP domain 185 234 3.2E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:3.30.565.10 505 675 1.9E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF55785 275 395 4.54E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF158472 185 234 3.27E-7 T 31-10-2018 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 402 4.5E-6 T 31-10-2018 IPR000014 PAS domain Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00091 287 352 3.8E-5 T 31-10-2018 IPR000014 PAS domain Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF00512 His Kinase A (phospho-acceptor) domain 413 499 1.3E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00304 185 238 1.4E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 609 1.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 664 1.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 1.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 PRINTS PR00344 Bacterial sensor protein C-terminal signature 613 623 1.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 666 1.4E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Pfam PF08448 PAS fold 294 397 6.8E-9 T 31-10-2018 IPR013656 PAS fold-4 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00387 550 667 2.5E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SUPERFAMILY SSF55874 506 665 1.7E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 Gene3D G3DSA:1.20.1480.50 156 244 3.3E-8 T 31-10-2018 Y89_4887 af7f6f3cb1640d9b7d264873b0912800 698 SMART SM00388 412 502 2.6E-5 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4483 94b245611db00c6b683b28704c566434 314 Pfam PF03466 LysR substrate binding domain 88 295 8.1E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4483 94b245611db00c6b683b28704c566434 314 Gene3D G3DSA:3.40.190.290 91 295 9.8E-56 T 31-10-2018 Y89_4483 94b245611db00c6b683b28704c566434 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.7E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4483 94b245611db00c6b683b28704c566434 314 SUPERFAMILY SSF53850 90 298 4.16E-40 T 31-10-2018 Y89_4483 94b245611db00c6b683b28704c566434 314 Gene3D G3DSA:1.10.10.10 4 89 1.3E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4483 94b245611db00c6b683b28704c566434 314 SUPERFAMILY SSF46785 7 111 1.04E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0435 df6111029f4dde52187772528317b52c 291 Gene3D G3DSA:1.10.155.10 8 84 2.6E-12 T 31-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Y89_0435 df6111029f4dde52187772528317b52c 291 Pfam PF01739 CheR methyltransferase, SAM binding domain 86 272 2.8E-59 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y89_0435 df6111029f4dde52187772528317b52c 291 Pfam PF03705 CheR methyltransferase, all-alpha domain 18 70 5.3E-10 T 31-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 39 52 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 79 91 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 223 237 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 154 170 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 PRINTS PR00996 Glutamate methyltransferase family signature 242 265 2.3E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_0435 df6111029f4dde52187772528317b52c 291 SUPERFAMILY SSF53335 87 275 1.25E-42 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0435 df6111029f4dde52187772528317b52c 291 SUPERFAMILY SSF47757 7 85 2.88E-15 T 31-10-2018 Y89_0435 df6111029f4dde52187772528317b52c 291 Gene3D G3DSA:3.40.50.150 85 285 1.1E-48 T 31-10-2018 Y89_0435 df6111029f4dde52187772528317b52c 291 SMART SM00138 17 283 7.9E-129 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_3826 d8f627373153637c15aee12d06a66f45 172 SUPERFAMILY SSF141452 2 171 6.54E-47 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_3826 d8f627373153637c15aee12d06a66f45 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 3.2E-73 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_3826 d8f627373153637c15aee12d06a66f45 172 Gene3D G3DSA:2.30.110.20 2 172 1.1E-82 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_3826 d8f627373153637c15aee12d06a66f45 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 5.9E-37 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_5956 d8f627373153637c15aee12d06a66f45 172 SUPERFAMILY SSF141452 2 171 6.54E-47 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_5956 d8f627373153637c15aee12d06a66f45 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 3.2E-73 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_5956 d8f627373153637c15aee12d06a66f45 172 Gene3D G3DSA:2.30.110.20 2 172 1.1E-82 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_5956 d8f627373153637c15aee12d06a66f45 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 5.9E-37 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_0271 d8f627373153637c15aee12d06a66f45 172 SUPERFAMILY SSF141452 2 171 6.54E-47 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_0271 d8f627373153637c15aee12d06a66f45 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 3.2E-73 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_0271 d8f627373153637c15aee12d06a66f45 172 Gene3D G3DSA:2.30.110.20 2 172 1.1E-82 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_0271 d8f627373153637c15aee12d06a66f45 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 5.9E-37 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 SMART SM00421 146 203 1.3E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 SMART SM00448 8 125 2.3E-5 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 SUPERFAMILY SSF52172 10 137 3.95E-13 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 Pfam PF00072 Response regulator receiver domain 11 125 2.5E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 SUPERFAMILY SSF46894 141 204 3.74E-15 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 8.5E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 8.5E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 8.5E-7 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 Gene3D G3DSA:3.40.50.12740 10 208 7.5E-32 T 31-10-2018 Y89_2123 5127963adc56ad285192ccb8a1ecdbc4 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 201 4.1E-14 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 177 395 1.0E-79 T 31-10-2018 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 Gene3D G3DSA:3.30.70.260 2 83 1.4E-14 T 31-10-2018 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 Pfam PF13740 ACT domain 3 79 2.2E-26 T 31-10-2018 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 Gene3D G3DSA:3.40.50.1000 106 396 3.1E-85 T 31-10-2018 IPR023214 HAD superfamily Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 SUPERFAMILY SSF56784 191 397 2.13E-52 T 31-10-2018 IPR036412 HAD-like superfamily Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 Pfam PF12710 haloacid dehalogenase-like hydrolase 193 360 3.1E-25 T 31-10-2018 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 SUPERFAMILY SSF55021 3 83 1.72E-14 T 31-10-2018 Y89_5630 8ee53f7349b8bd8c8b5f42d57904e7fb 404 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 192 362 1.3E-33 T 31-10-2018 Y89_0675 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.7E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.7E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.7E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 1.7E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 Gene3D G3DSA:3.40.50.12740 3 210 4.3E-59 T 31-10-2018 Y89_0675 ce19a4b647afb21915221c6001467326 210 SUPERFAMILY SSF52172 3 133 3.98E-33 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0675 ce19a4b647afb21915221c6001467326 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 SUPERFAMILY SSF46894 138 209 3.4E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0675 ce19a4b647afb21915221c6001467326 210 Pfam PF00072 Response regulator receiver domain 5 117 4.5E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0675 ce19a4b647afb21915221c6001467326 210 SMART SM00448 3 116 3.4E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0675 ce19a4b647afb21915221c6001467326 210 SMART SM00421 147 204 1.4E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 2.4E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:3.40.190.10 161 263 1.1E-62 T 31-10-2018 Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 Pfam PF03466 LysR substrate binding domain 88 289 3.1E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 SUPERFAMILY SSF46785 5 87 1.87E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 SUPERFAMILY SSF53850 90 291 1.16E-45 T 31-10-2018 Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:3.40.190.10 91 288 1.1E-62 T 31-10-2018 Y89_2938 930c6a25c223ad39cf12ed1eac32a574 297 Gene3D G3DSA:1.10.10.10 3 86 1.7E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1026 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Pfam PF04359 Protein of unknown function (DUF493) 10 93 2.1E-27 T 31-10-2018 IPR007454 Uncharacterised protein family UPF0250 Y89_1026 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Gene3D G3DSA:3.30.70.260 6 93 4.1E-27 T 31-10-2018 Y89_1026 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 SUPERFAMILY SSF117991 7 93 4.32E-25 T 31-10-2018 IPR027471 YbeD-like domain superfamily Y89_1026 ad39e6c9a6c5d5d7a072e6fc03cb36b9 93 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 4 93 25.298 T 31-10-2018 IPR007454 Uncharacterised protein family UPF0250 Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 7.7E-13 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 SUPERFAMILY SSF46785 7 85 5.8E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 Gene3D G3DSA:3.40.190.290 98 302 1.3E-35 T 31-10-2018 Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 Gene3D G3DSA:1.10.10.10 7 93 3.7E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 Pfam PF03466 LysR substrate binding domain 96 297 3.0E-35 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0224 eadf80ad184c48c81da7ba8ea9fc7793 309 SUPERFAMILY SSF53850 97 297 5.43E-28 T 31-10-2018 Y89_5615 c329d75c4870110955026ff67a5d4bff 323 SUPERFAMILY SSF52540 8 152 1.84E-18 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5615 c329d75c4870110955026ff67a5d4bff 323 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 303 3.1E-102 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y89_5615 c329d75c4870110955026ff67a5d4bff 323 Gene3D G3DSA:1.10.20.140 114 196 5.6E-102 T 31-10-2018 Y89_5615 c329d75c4870110955026ff67a5d4bff 323 Gene3D G3DSA:3.40.50.300 11 302 5.6E-102 T 31-10-2018 Y89_5615 c329d75c4870110955026ff67a5d4bff 323 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 314 30.022 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y89_5615 c329d75c4870110955026ff67a5d4bff 323 Pfam PF01715 IPP transferase 41 297 2.8E-87 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Y89_5184 1a2d0cf1e099427d86496048c214557a 108 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 73 103 9.0E-11 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y89_5184 1a2d0cf1e099427d86496048c214557a 108 Gene3D G3DSA:1.20.120.910 5 105 9.6E-23 T 31-10-2018 Y89_5184 1a2d0cf1e099427d86496048c214557a 108 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 78 102 - T 31-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y89_5184 1a2d0cf1e099427d86496048c214557a 108 SUPERFAMILY SSF57716 75 106 1.43E-7 T 31-10-2018 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 SUPERFAMILY SSF58104 229 537 1.31E-78 T 31-10-2018 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 SMART SM00304 209 261 2.4E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 SMART SM00304 296 356 17.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 Pfam PF00672 HAMP domain 209 248 3.6E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 Gene3D G3DSA:1.10.287.950 209 538 7.7E-78 T 31-10-2018 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 3.0E-8 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 3.0E-8 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 504 1.2E-44 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2627 9d8ea9fd595398680c3b264921f1f68b 538 SMART SM00283 276 537 1.9E-81 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4873 a69da7f68303a06bdc22e080fa1c4826 228 Pfam PF08857 Putative ParB-like nuclease 32 187 1.6E-46 T 31-10-2018 IPR014956 Putative ParB-like nuclease Y89_4873 a69da7f68303a06bdc22e080fa1c4826 228 PIRSF PIRSF029669 15 228 2.3E-82 T 31-10-2018 IPR016932 Uncharacterised conserved protein UCP029669 Y89_4873 a69da7f68303a06bdc22e080fa1c4826 228 Gene3D G3DSA:3.90.1530.10 25 154 1.0E-37 T 31-10-2018 Y89_4873 a69da7f68303a06bdc22e080fa1c4826 228 SUPERFAMILY SSF110849 29 225 8.37E-58 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_4873 a69da7f68303a06bdc22e080fa1c4826 228 Gene3D G3DSA:1.10.8.10 155 217 8.9E-8 T 31-10-2018 Y89_6183 162dcb30f1888873155a6b9021637f66 951 Gene3D G3DSA:3.30.70.270 525 700 9.3E-54 T 31-10-2018 Y89_6183 162dcb30f1888873155a6b9021637f66 951 Gene3D G3DSA:3.20.20.450 701 949 1.6E-102 T 31-10-2018 IPR035919 EAL domain superfamily Y89_6183 162dcb30f1888873155a6b9021637f66 951 Gene3D G3DSA:3.30.450.20 401 524 1.2E-30 T 31-10-2018 Y89_6183 162dcb30f1888873155a6b9021637f66 951 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 527 685 8.0E-33 T 31-10-2018 IPR000160 GGDEF domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 522 6.5E-20 T 31-10-2018 IPR000014 PAS domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 324 399 5.4E-8 T 31-10-2018 IPR000014 PAS domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 Pfam PF00990 Diguanylate cyclase, GGDEF domain 527 682 2.3E-41 T 31-10-2018 IPR000160 GGDEF domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 Pfam PF13426 PAS domain 412 513 2.9E-16 T 31-10-2018 IPR000014 PAS domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00052 697 942 8.0E-119 T 31-10-2018 IPR001633 EAL domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 Gene3D G3DSA:3.30.450.20 272 344 4.1E-12 T 31-10-2018 Y89_6183 162dcb30f1888873155a6b9021637f66 951 Pfam PF08447 PAS fold 318 386 6.5E-17 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00086 473 515 0.0021 T 31-10-2018 IPR001610 PAC motif Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00086 350 393 1.0E-6 T 31-10-2018 IPR001610 PAC motif Y89_6183 162dcb30f1888873155a6b9021637f66 951 Pfam PF00563 EAL domain 704 937 5.1E-73 T 31-10-2018 IPR001633 EAL domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 SUPERFAMILY SSF55785 392 512 4.54E-24 T 31-10-2018 IPR035965 PAS domain superfamily Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00267 515 687 3.6E-52 T 31-10-2018 IPR000160 GGDEF domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 SUPERFAMILY SSF55073 531 689 1.33E-42 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_6183 162dcb30f1888873155a6b9021637f66 951 Gene3D G3DSA:2.10.70.100 347 395 1.6E-9 T 31-10-2018 Y89_6183 162dcb30f1888873155a6b9021637f66 951 SUPERFAMILY SSF141868 702 949 1.96E-91 T 31-10-2018 IPR035919 EAL domain superfamily Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00091 277 343 98.0 T 31-10-2018 IPR000014 PAS domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 SMART SM00091 401 467 2.6E-8 T 31-10-2018 IPR000014 PAS domain Y89_6183 162dcb30f1888873155a6b9021637f66 951 SUPERFAMILY SSF55785 319 395 1.74E-14 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 SMART SM01060 34 414 2.6E-240 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 ProSitePatterns PS00438 Catalase proximal active site signature. 70 86 - T 31-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PIRSF PIRSF038928 24 503 2.5E-174 T 31-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 47 70 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 109 127 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 344 370 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 130 147 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 149 167 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 PRINTS PR00067 Catalase signature 312 339 1.5E-66 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 SUPERFAMILY SSF56634 29 503 1.57E-186 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 Gene3D G3DSA:2.40.180.10 30 513 3.5E-210 T 31-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 Pfam PF06628 Catalase-related immune-responsive 436 495 3.3E-11 T 31-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 Pfam PF00199 Catalase 34 411 4.4E-164 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_5221 4ce70b73173bf71848be4b223e781f2a 513 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 357 365 - T 31-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF53633 4 241 1.31E-75 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 404 3.7E-131 T 31-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF55021 332 405 4.37E-25 T 31-10-2018 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 PIRSF PIRSF000726 57 411 3.3E-153 T 31-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 PIRSF PIRSF000726 1 62 7.8E-24 T 31-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 403 1.8E-117 T 31-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.30.70.260 262 339 2.5E-58 T 31-10-2018 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF13840 ACT domain 339 399 1.8E-15 T 31-10-2018 IPR027795 CASTOR, ACT domain Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 31-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 SUPERFAMILY SSF55021 249 327 1.4E-17 T 31-10-2018 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF00696 Amino acid kinase family 3 229 5.7E-49 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Pfam PF01842 ACT domain 268 325 2.9E-10 T 31-10-2018 IPR002912 ACT domain Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.30.70.260 255 404 2.5E-58 T 31-10-2018 Y89_4455 e938cfecf68233c7f3f8b42446c07b92 412 Gene3D G3DSA:3.40.1160.10 1 254 1.3E-91 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5402 48c7ca033e33c1815688dc0c2430068d 101 SUPERFAMILY SSF101386 1 99 2.94E-30 T 31-10-2018 Y89_5402 48c7ca033e33c1815688dc0c2430068d 101 PIRSF PIRSF029826 1 101 1.4E-35 T 31-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y89_5402 48c7ca033e33c1815688dc0c2430068d 101 Pfam PF12643 MazG-like family 31 94 1.9E-7 T 31-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y89_5402 48c7ca033e33c1815688dc0c2430068d 101 Gene3D G3DSA:1.10.287.1080 1 101 8.4E-27 T 31-10-2018 Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 Gene3D G3DSA:1.20.5.420 1 31 4.7E-22 T 31-10-2018 Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 SUPERFAMILY SSF46785 3 143 6.73E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 SMART SM00347 26 128 2.1E-12 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 Gene3D G3DSA:1.10.287.100 98 147 5.5E-27 T 31-10-2018 Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 Gene3D G3DSA:1.10.10.10 32 97 1.0E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1952 63a26e634eaabd04f82d9ed7e1bfb91b 147 Pfam PF13463 Winged helix DNA-binding domain 34 100 1.4E-8 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Gene3D G3DSA:3.40.50.920 198 331 1.2E-41 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Pfam PF02779 Transketolase, pyrimidine binding domain 12 186 4.5E-48 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Gene3D G3DSA:3.40.50.970 8 197 3.2E-73 T 31-10-2018 Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SUPERFAMILY SSF52518 11 194 6.96E-62 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SMART SM00861 11 186 7.6E-60 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 SUPERFAMILY SSF52922 197 331 4.19E-37 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_1591 6d4d734b1b0ee49f7efcd5a7fcb00ccc 333 Pfam PF02780 Transketolase, C-terminal domain 205 322 8.9E-35 T 31-10-2018 IPR033248 Transketolase, C-terminal domain Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 1.2E-105 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.70.1430 566 665 0.0 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.70.1440 666 862 0.0 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:1.20.1640.10 512 1019 0.0 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.2090.10 178 274 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:1.20.1640.10 8 511 0.0 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82693 38 130 3.14E-24 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1022 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82866 295 497 8.76E-50 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82693 135 329 1.36E-25 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82693 564 667 6.02E-25 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82714 181 270 4.58E-18 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1032 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82866 803 1025 1.05E-44 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.70.1430 38 814 0.0 T 31-10-2018 Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 SUPERFAMILY SSF82714 719 805 5.62E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3304 572c3c5f2a129f464e8fe5c5c0408201 1045 Gene3D G3DSA:3.30.70.1320 132 331 0.0 T 31-10-2018 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 Gene3D G3DSA:3.40.50.620 1 329 2.4E-154 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1885 c7556fe7c14051fea3bc90162792493b 494 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 470 9.2E-142 T 31-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 203 1.3E-21 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 1.3E-21 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 1.3E-21 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 217 1.3E-21 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 1.3E-21 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 SUPERFAMILY SSF52374 4 308 3.75E-110 T 31-10-2018 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 Gene3D G3DSA:1.10.10.350 371 494 1.3E-35 T 31-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 320 1.4E-109 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 SUPERFAMILY SSF48163 314 472 7.59E-34 T 31-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Y89_1885 c7556fe7c14051fea3bc90162792493b 494 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 3 471 29.851 T 31-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Y89_5526 8caa4acd482d69c22841f9587af12802 197 Pfam PF01914 MarC family integral membrane protein 2 193 7.2E-37 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y89_5526 8caa4acd482d69c22841f9587af12802 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 190 4.5E-32 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y89_3139 8a53c8588eb1da2d260d25c64c7acf98 79 SUPERFAMILY SSF57868 5 50 8.0E-12 T 31-10-2018 IPR017854 Metallothionein domain superfamily GO:0046872 Y89_3139 8a53c8588eb1da2d260d25c64c7acf98 79 Gene3D G3DSA:2.30.170.10 1 51 3.8E-11 T 31-10-2018 Y89_3139 8a53c8588eb1da2d260d25c64c7acf98 79 Pfam PF02069 Prokaryotic metallothionein 5 49 4.6E-13 T 31-10-2018 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 Y89_3139 8a53c8588eb1da2d260d25c64c7acf98 79 ProDom PD019076 METALLOTHIONEIN METALLOTHIONEIN ZINC METAL-BINDING CADMIUM CLUSTER MT METAL-THIOLATE COPPER SMTA 6 49 2.0E-18 T 31-10-2018 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 492 2.2E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0190 b80466a1a784fb3797affb23776113d4 639 Gene3D G3DSA:2.40.50.180 516 581 2.1E-40 T 31-10-2018 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SMART SM00387 353 493 5.4E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0190 b80466a1a784fb3797affb23776113d4 639 SMART SM00260 485 626 4.6E-34 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Gene3D G3DSA:1.10.287.560 245 308 1.1E-18 T 31-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SUPERFAMILY SSF47384 247 309 1.26E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SUPERFAMILY SSF47226 4 127 1.57E-33 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SMART SM00073 5 102 5.6E-30 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0190 b80466a1a784fb3797affb23776113d4 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0190 b80466a1a784fb3797affb23776113d4 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 447 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0190 b80466a1a784fb3797affb23776113d4 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0190 b80466a1a784fb3797affb23776113d4 639 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 1.1E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SUPERFAMILY SSF50341 492 625 1.57E-30 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Pfam PF01627 Hpt domain 7 105 9.4E-22 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 247 308 5.4E-18 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Gene3D G3DSA:3.30.565.10 309 492 3.7E-56 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0190 b80466a1a784fb3797affb23776113d4 639 Gene3D G3DSA:2.30.30.40 493 622 2.1E-40 T 31-10-2018 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SMART SM01231 245 308 1.5E-23 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Gene3D G3DSA:1.20.120.160 2 138 7.1E-39 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0190 b80466a1a784fb3797affb23776113d4 639 Pfam PF01584 CheW-like domain 498 625 2.1E-26 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0190 b80466a1a784fb3797affb23776113d4 639 SUPERFAMILY SSF55874 310 491 6.55E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0315 7784db45bb1394634388d92bef2cd011 250 Gene3D G3DSA:3.40.50.880 2 250 2.5E-68 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0315 7784db45bb1394634388d92bef2cd011 250 Pfam PF07722 Peptidase C26 5 223 6.6E-77 T 31-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 Y89_0315 7784db45bb1394634388d92bef2cd011 250 SUPERFAMILY SSF52317 4 246 1.92E-39 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1424 e79b82bb1766551c7e3b60fffabcd88d 536 PIRSF PIRSF500060 12 532 2.4E-239 T 31-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria Y89_1424 e79b82bb1766551c7e3b60fffabcd88d 536 Gene3D G3DSA:3.20.20.70 148 503 6.0E-109 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1424 e79b82bb1766551c7e3b60fffabcd88d 536 PIRSF PIRSF006429 8 535 3.4E-164 T 31-10-2018 IPR024188 Glutamate synthase large subunit-like protein Y89_1424 e79b82bb1766551c7e3b60fffabcd88d 536 Pfam PF01645 Conserved region in glutamate synthase 158 475 1.6E-81 T 31-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Y89_1424 e79b82bb1766551c7e3b60fffabcd88d 536 SUPERFAMILY SSF51395 6 502 8.37E-139 T 31-10-2018 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 PIRSF PIRSF001227 176 759 2.5E-55 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 PIRSF PIRSF001227 10 153 6.6E-14 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 Gene3D G3DSA:1.10.1400.10 509 690 9.8E-237 T 31-10-2018 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 Gene3D G3DSA:1.10.439.10 28 192 1.0E-66 T 31-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 Gene3D G3DSA:2.30.120.10 292 366 9.8E-237 T 31-10-2018 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 SUPERFAMILY SSF56235 33 756 2.83E-184 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_2814 d9f505246f815b00e21101a89d86fe97 762 Pfam PF01804 Penicillin amidase 33 750 1.3E-143 T 31-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y89_2814 d9f505246f815b00e21101a89d86fe97 762 Gene3D G3DSA:3.60.20.10 217 749 9.8E-237 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 Pfam PF00849 RNA pseudouridylate synthase 30 174 1.1E-15 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 Gene3D G3DSA:3.30.70.1560 94 193 1.2E-42 T 31-10-2018 Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 SUPERFAMILY SSF55120 28 206 3.68E-44 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 65 79 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 34 203 1.0E-58 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_1055 e9fa7d3c0dbe36814780eaae5e37f156 208 Gene3D G3DSA:3.30.70.580 19 93 5.2E-29 T 31-10-2018 Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 Gene3D G3DSA:3.30.9.10 114 309 9.2E-12 T 31-10-2018 Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 SUPERFAMILY SSF51905 8 275 1.94E-25 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 5 494 54.09 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 Gene3D G3DSA:3.50.50.60 10 264 9.2E-12 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 9 492 4.8E-266 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_5251 eef75c9baf03e2a58decb49fd36e2c40 507 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 8 494 2.9E-232 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 Gene3D G3DSA:3.20.20.100 1 272 3.0E-89 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 34 51 - T 31-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 SUPERFAMILY SSF51430 7 262 7.33E-79 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 119 136 - T 31-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 30 54 3.5E-42 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 86 104 3.5E-42 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 154 183 3.5E-42 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 119 136 3.5E-42 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PRINTS PR00069 Aldo-keto reductase signature 191 215 3.5E-42 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 PIRSF PIRSF000097 2 270 2.9E-60 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_0855 cc796ebd2e59a5ddf2248dedcb82cc49 272 Pfam PF00248 Aldo/keto reductase family 12 255 3.5E-46 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Gene3D G3DSA:3.40.640.10 100 359 4.2E-103 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Gene3D G3DSA:3.40.640.10 529 757 2.8E-62 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 12 956 26.222 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Gene3D G3DSA:3.90.1150.10 766 904 1.7E-42 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 SUPERFAMILY SSF53383 466 952 2.45E-107 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 SUPERFAMILY SSF53383 21 446 2.33E-99 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 21 950 0.0 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Pfam PF02347 Glycine cleavage system P-protein 483 743 5.7E-10 T 31-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_2753 487c4a0495d0f6741f8b2eaa41f01925 959 Pfam PF02347 Glycine cleavage system P-protein 21 444 4.8E-181 T 31-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Y89_1019 fdeea7d54955d5362d7e550a9b615e08 118 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 26.368 T 31-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Y89_1019 fdeea7d54955d5362d7e550a9b615e08 118 Gene3D G3DSA:3.30.460.10 1 117 3.4E-40 T 31-10-2018 Y89_1019 fdeea7d54955d5362d7e550a9b615e08 118 SUPERFAMILY SSF81301 1 111 8.66E-41 T 31-10-2018 Y89_1019 fdeea7d54955d5362d7e550a9b615e08 118 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.3E-27 T 31-10-2018 Y89_1019 fdeea7d54955d5362d7e550a9b615e08 118 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 6.6E-39 T 31-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 Gene3D G3DSA:1.20.1050.10 88 193 4.3E-27 T 31-10-2018 Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 SUPERFAMILY SSF47616 71 194 1.64E-21 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 SUPERFAMILY SSF52833 1 83 4.94E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 190 1.1E-7 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 Gene3D G3DSA:3.40.30.10 1 87 5.7E-21 T 31-10-2018 Y89_1984 e283125fd55e5a1e71a4bb12bfb73d67 198 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 7.0E-12 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_5475 7853b2ee744ac6849e075154160e8cb0 594 Pfam PF00665 Integrase core domain 153 304 2.5E-11 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_5475 7853b2ee744ac6849e075154160e8cb0 594 SUPERFAMILY SSF53098 201 346 1.97E-14 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_5475 7853b2ee744ac6849e075154160e8cb0 594 Gene3D G3DSA:3.30.420.10 142 366 1.7E-6 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 Gene3D G3DSA:1.10.1740.10 5 76 3.1E-6 T 31-10-2018 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 Pfam PF08281 Sigma-70, region 4 110 162 5.6E-11 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 163 5.5E-16 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 Gene3D G3DSA:1.10.10.10 91 168 2.6E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 SUPERFAMILY SSF88946 6 76 5.49E-11 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 Pfam PF04542 Sigma-70 region 2 19 79 3.5E-13 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3225 c5d4ec78533c8005a7055a3e1e3258aa 168 SUPERFAMILY SSF88659 90 166 1.44E-12 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0630 68e4e1e45fe30b24d9c24d7db275a9c0 340 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 10 332 2.8E-92 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Y89_0630 68e4e1e45fe30b24d9c24d7db275a9c0 340 Pfam PF05125 Phage major capsid protein, P2 family 12 332 4.8E-121 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Pfam PF13167 GTP-binding GTPase N-terminal 14 99 2.5E-31 T 31-10-2018 IPR025121 GTPase HflX, N-terminal Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Gene3D G3DSA:3.40.50.11060 5 125 6.8E-39 T 31-10-2018 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 SUPERFAMILY SSF52540 185 360 4.6E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Pfam PF01926 50S ribosome-binding GTPase 187 305 2.5E-21 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Pfam PF16360 GTP-binding GTPase Middle Region 101 179 2.2E-29 T 31-10-2018 IPR032305 GTP-binding protein, middle domain Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 208 226 2.9E-10 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 254 272 2.9E-10 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 187 207 2.9E-10 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Hamap MF_00900 GTPase HflX [hflX]. 14 377 47.977 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 6 347 9.2E-154 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 Gene3D G3DSA:3.40.50.300 184 351 6.0E-41 T 31-10-2018 Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 SUPERFAMILY SSF54980 356 406 4.1E-8 T 31-10-2018 IPR035647 EF-G domain III/V-like Y89_5613 ec5ffecdfc8e70a11c7f7a91504ad4d6 419 PIRSF PIRSF006809 1 408 4.1E-148 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 Y89_6266 d8964095ae6b02053a7f96847fc5df8d 70 Pfam PF06004 Bacterial protein of unknown function (DUF903) 22 68 4.9E-16 T 31-10-2018 IPR010305 Protein of unknown function DUF903 Y89_6266 d8964095ae6b02053a7f96847fc5df8d 70 SUPERFAMILY SSF50182 19 69 6.0E-12 T 31-10-2018 IPR010920 LSM domain superfamily Y89_6266 d8964095ae6b02053a7f96847fc5df8d 70 Gene3D G3DSA:2.30.30.100 18 70 1.4E-14 T 31-10-2018 Y89_1282 6fe16d27711c6026fc134ccce6e6487b 83 SUPERFAMILY SSF54565 1 78 1.22E-28 T 31-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1282 6fe16d27711c6026fc134ccce6e6487b 83 Pfam PF00886 Ribosomal protein S16 8 68 1.2E-24 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1282 6fe16d27711c6026fc134ccce6e6487b 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 3.7E-28 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1282 6fe16d27711c6026fc134ccce6e6487b 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.151 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1282 6fe16d27711c6026fc134ccce6e6487b 83 Gene3D G3DSA:3.30.1320.10 1 82 1.1E-31 T 31-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2744 29d0a74060c0eed0587659d13ae796fa 175 Pfam PF00583 Acetyltransferase (GNAT) family 47 150 5.0E-12 T 31-10-2018 IPR000182 GNAT domain Y89_2744 29d0a74060c0eed0587659d13ae796fa 175 Gene3D G3DSA:3.40.630.30 2 167 9.3E-15 T 31-10-2018 Y89_2744 29d0a74060c0eed0587659d13ae796fa 175 SUPERFAMILY SSF55729 5 161 3.21E-17 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF46785 504 566 1.41E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Gene3D G3DSA:3.40.50.300 1 164 1.6E-48 T 31-10-2018 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.0E-7 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.0E-7 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.0E-7 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.0E-7 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Pfam PF09106 Elongation factor SelB, winged helix 442 497 3.1E-15 T 31-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF46785 432 502 6.26E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF52540 2 191 4.53E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5419 9b30092422c70645028d9b959cf39e6a 641 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF50447 172 261 1.04E-17 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Pfam PF00009 Elongation factor Tu GTP binding domain 2 161 3.1E-31 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Gene3D G3DSA:2.40.30.10 174 289 3.3E-23 T 31-10-2018 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Pfam PF09107 Elongation factor SelB, winged helix 583 625 2.0E-18 T 31-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF50465 269 365 6.83E-19 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y89_5419 9b30092422c70645028d9b959cf39e6a 641 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 627 3.0E-146 T 31-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 SUPERFAMILY SSF46785 578 626 5.44E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Gene3D G3DSA:1.10.10.2770 433 565 1.2E-23 T 31-10-2018 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 159 1.3E-12 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_5419 9b30092422c70645028d9b959cf39e6a 641 Gene3D G3DSA:1.10.10.10 568 627 1.7E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6211 991a94bcc8961c92f529332caa36b4d0 204 TIGRFAM TIGR03072 release_prfH: putative peptide chain release factor H 2 201 3.9E-98 T 31-10-2018 IPR017509 Putative peptide chain release factor H Y89_6211 991a94bcc8961c92f529332caa36b4d0 204 SUPERFAMILY SSF75620 3 196 7.98E-43 T 31-10-2018 Y89_6211 991a94bcc8961c92f529332caa36b4d0 204 Gene3D G3DSA:3.30.160.20 103 187 8.9E-26 T 31-10-2018 Y89_6211 991a94bcc8961c92f529332caa36b4d0 204 Pfam PF00472 RF-1 domain 107 191 1.4E-22 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_6211 991a94bcc8961c92f529332caa36b4d0 204 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 115 131 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 2.5E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 2.5E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 2.5E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 6.9E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 6.9E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 6.9E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 SUPERFAMILY SSF53474 4 296 8.24E-65 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 311 4.6E-131 T 31-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 PIRSF PIRSF006431 1 315 1.5E-135 T 31-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 Gene3D G3DSA:3.40.50.1820 2 312 2.5E-105 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5752 088d45bf8ccbbdb2fac286bfbc8f9cae 323 Pfam PF00561 alpha/beta hydrolase fold 36 296 2.1E-37 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4714 44ac05fccfee140001285000eea21610 1073 Pfam PF00176 SNF2 family N-terminal domain 249 299 5.3E-6 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_4714 44ac05fccfee140001285000eea21610 1073 SMART SM00490 707 809 3.1E-8 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4714 44ac05fccfee140001285000eea21610 1073 SUPERFAMILY SSF52540 285 834 1.22E-34 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4714 44ac05fccfee140001285000eea21610 1073 Gene3D G3DSA:3.40.50.10810 235 455 4.2E-24 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_4714 44ac05fccfee140001285000eea21610 1073 Gene3D G3DSA:3.40.50.300 638 836 1.9E-29 T 31-10-2018 Y89_4714 44ac05fccfee140001285000eea21610 1073 Pfam PF00271 Helicase conserved C-terminal domain 689 809 1.0E-11 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4714 44ac05fccfee140001285000eea21610 1073 SMART SM00487 233 418 2.3E-6 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1569 bfdc28d6d607697c291964653a79df4a 186 SUPERFAMILY SSF55620 5 183 8.89E-79 T 31-10-2018 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 Gene3D G3DSA:1.10.286.10 2 52 2.8E-21 T 31-10-2018 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 110 120 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 Pfam PF01227 GTP cyclohydrolase I 6 182 6.4E-76 T 31-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 183 39.246 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 6 183 1.4E-77 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 62 78 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Y89_1569 bfdc28d6d607697c291964653a79df4a 186 Gene3D G3DSA:3.30.1130.10 53 186 5.0E-63 T 31-10-2018 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 100 2.2E-25 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 SMART SM00739 3 30 1.2E-4 T 31-10-2018 IPR005824 KOW Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 100 4.0E-38 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 31-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 Pfam PF00467 KOW motif 7 31 4.6E-6 T 31-10-2018 IPR005824 KOW Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 Gene3D G3DSA:2.30.30.30 1 103 4.0E-39 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 21.4 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0770 37595350c8aa8d61a6ff875d96ca0d9e 104 SUPERFAMILY SSF50104 3 99 9.96E-34 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily Y89_3958 92fc33d99c30ae118853d9aaaf7dfa13 415 Gene3D G3DSA:3.40.50.2000 39 325 3.3E-48 T 31-10-2018 Y89_3958 92fc33d99c30ae118853d9aaaf7dfa13 415 SUPERFAMILY SSF53756 29 339 3.38E-58 T 31-10-2018 Y89_3958 92fc33d99c30ae118853d9aaaf7dfa13 415 Pfam PF00534 Glycosyl transferases group 1 148 317 1.4E-28 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_3958 92fc33d99c30ae118853d9aaaf7dfa13 415 Gene3D G3DSA:3.40.50.2000 134 323 3.3E-48 T 31-10-2018 Y89_4126 33322ddcd9aa2331e668982e8dab0f25 296 PIRSF PIRSF000707 14 292 1.8E-10 T 31-10-2018 IPR016259 Hygromycin-B kinase Y89_4126 33322ddcd9aa2331e668982e8dab0f25 296 Gene3D G3DSA:3.30.200.20 7 90 1.7E-16 T 31-10-2018 Y89_4126 33322ddcd9aa2331e668982e8dab0f25 296 SUPERFAMILY SSF56112 12 260 1.73E-20 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_4126 33322ddcd9aa2331e668982e8dab0f25 296 Pfam PF01636 Phosphotransferase enzyme family 29 256 9.1E-26 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_4126 33322ddcd9aa2331e668982e8dab0f25 296 Gene3D G3DSA:3.90.1200.10 96 275 1.1E-9 T 31-10-2018 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 157 3.5E-8 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 68 80 3.5E-8 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 3.5E-8 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 SUPERFAMILY SSF50891 25 185 1.05E-56 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 185 1.5E-47 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 63 80 - T 31-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Y89_1788 cbcde0bbaa99ea6051421d599a14a1e5 187 Gene3D G3DSA:2.40.100.10 24 186 3.8E-64 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 SUPERFAMILY SSF101386 2 104 1.96E-23 T 31-10-2018 Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 Gene3D G3DSA:1.10.287.1080 141 272 1.1E-47 T 31-10-2018 Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 TIGRFAM TIGR00444 mazG: MazG family protein 10 267 3.9E-97 T 31-10-2018 IPR011551 NTP pyrophosphohydrolase MazG Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 4.2E-26 T 31-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 180 236 4.7E-10 T 31-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 Gene3D G3DSA:1.10.287.1080 1 133 8.2E-43 T 31-10-2018 Y89_4424 f0a93eb3391d9f746581e842d79244f6 276 SUPERFAMILY SSF101386 147 245 1.6E-26 T 31-10-2018 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 120 136 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 73 87 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 102 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 293 319 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 248 267 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 30 46 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 1.6E-46 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Gene3D G3DSA:3.40.190.10 27 317 4.5E-101 T 31-10-2018 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 PIRSF PIRSF019574 5 347 5.7E-109 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 SUPERFAMILY SSF53850 24 346 1.18E-82 T 31-10-2018 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Gene3D G3DSA:3.40.190.10 129 343 4.5E-101 T 31-10-2018 Y89_0343 5a0bf2ade6ad82c1a3f6b1a0baeea056 347 Pfam PF13416 Bacterial extracellular solute-binding protein 40 301 1.8E-29 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_3091 96c51431097f76425604a2919bb27d97 140 Pfam PF04120 Low affinity iron permease 3 125 4.9E-50 T 31-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.6E-18 T 31-10-2018 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 SMART SM00344 4 113 4.5E-38 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 Gene3D G3DSA:1.10.10.10 1 57 7.5E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 SUPERFAMILY SSF46785 4 62 3.33E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 Gene3D G3DSA:3.30.70.920 58 141 5.2E-25 T 31-10-2018 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 SUPERFAMILY SSF54909 66 153 8.85E-20 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.3E-22 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 6.8E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 6.8E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3009 e2a523c485885e12328fcb3f16c988aa 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 6.8E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 2 179 35.967 T 31-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 SMART SM00072 2 182 5.7E-6 T 31-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 178 1.1E-66 T 31-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 SUPERFAMILY SSF52540 3 180 4.26E-39 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 Gene3D G3DSA:3.30.63.10 36 91 4.7E-16 T 31-10-2018 Y89_1636 c08fb0dbfa7c034d4318ea2e69b4fa06 185 Gene3D G3DSA:3.40.50.300 8 151 4.7E-16 T 31-10-2018 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 453 1.1E-173 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Hamap MF_00195 GTPase Der [der]. 2 456 38.055 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:3.40.50.300 193 368 5.4E-48 T 31-10-2018 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:3.40.50.300 2 159 3.3E-42 T 31-10-2018 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 4.4E-10 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.4E-10 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 SUPERFAMILY SSF52540 137 459 4.09E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Pfam PF01926 50S ribosome-binding GTPase 199 317 2.8E-24 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Pfam PF01926 50S ribosome-binding GTPase 5 119 8.4E-28 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 373 453 4.9E-25 T 31-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Y89_1227 437b8899cbaf125cb63f2250795bf699 493 Gene3D G3DSA:3.30.300.20 373 454 6.1E-19 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_1227 437b8899cbaf125cb63f2250795bf699 493 SUPERFAMILY SSF52540 4 168 7.72E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1227 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 197 363 6.3E-24 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 153 1.2E-20 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_1227 437b8899cbaf125cb63f2250795bf699 493 PIRSF PIRSF006485 1 461 2.8E-171 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 19 207 8.4E-105 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 19 209 43.732 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 Gene3D G3DSA:3.90.226.10 12 212 6.4E-84 T 31-10-2018 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 106 117 - T 31-10-2018 IPR018215 ClpP, Ser active site Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 Pfam PF00574 Clp protease 29 208 1.3E-88 T 31-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 128 141 - T 31-10-2018 IPR033135 ClpP, histidine active site Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 35 50 2.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 2.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 127 146 2.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 184 203 2.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 PRINTS PR00127 Clp protease catalytic subunit P signature 106 123 2.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_3528 07e51ed7ba21ae35f08f734999ec04a9 213 SUPERFAMILY SSF52096 27 210 6.84E-76 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_5050 acd3ca891cec16c49099f8f12d105cfc 352 Pfam PF03969 AFG1-like ATPase 7 349 4.0E-136 T 31-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y89_5050 acd3ca891cec16c49099f8f12d105cfc 352 SUPERFAMILY SSF52540 43 170 4.8E-13 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5050 acd3ca891cec16c49099f8f12d105cfc 352 Gene3D G3DSA:3.40.50.300 15 183 1.7E-17 T 31-10-2018 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:2.40.160.50 271 579 3.5E-99 T 31-10-2018 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:3.10.20.310 103 189 6.2E-17 T 31-10-2018 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF01103 Surface antigen 393 576 2.7E-32 T 31-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF17243 POTRA domain TamA domain 1 29 101 1.2E-18 T 31-10-2018 IPR035243 TamA, POTRA domain 1 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:3.10.20.310 26 102 2.7E-8 T 31-10-2018 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Gene3D G3DSA:3.10.20.310 190 270 8.1E-21 T 31-10-2018 Y89_2648 a62444a6fefb6da80d88eb26ba55b50f 579 Pfam PF07244 Surface antigen variable number repeat 190 249 7.3E-9 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_0985 5d10ce16a747f8632dd41310dddab3b6 600 Pfam PF09822 ABC-type uncharacterized transport system 34 291 3.1E-62 T 31-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 Gene3D G3DSA:1.10.1020.10 59 156 9.2E-32 T 31-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 176 188 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 11 27 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 32 46 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 52 65 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 11 242 3.1E-19 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 PIRSF PIRSF000398 1 270 5.7E-38 T 31-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 SUPERFAMILY SSF53335 6 265 1.86E-47 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5069 85cc4a6bfd8deae8ceec8a054464c954 296 Gene3D G3DSA:3.40.50.150 8 241 9.2E-32 T 31-10-2018 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 215 229 - T 31-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 2.2E-62 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 Pfam PF00459 Inositol monophosphatase family 1 258 1.1E-66 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 Gene3D G3DSA:3.40.190.80 143 271 6.6E-38 T 31-10-2018 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 Gene3D G3DSA:3.30.540.10 1 142 9.3E-50 T 31-10-2018 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 31-10-2018 IPR020583 Inositol monophosphatase, metal-binding site Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 160 186 1.5E-21 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 1.5E-21 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 1.5E-21 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 PRINTS PR01959 SuhB family inositol monophosphatase signature 202 214 1.5E-21 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Y89_1208 ab3265fc50fc920b02b5ce33cdca405b 271 SUPERFAMILY SSF56655 1 265 9.42E-85 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.2090.10 183 272 1.7E-243 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82693 553 653 2.49E-8 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:1.20.1640.10 510 1004 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.70.1430 554 653 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Pfam PF00873 AcrB/AcrD/AcrF family 8 1005 4.9E-157 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.70.1440 654 852 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82693 44 139 4.36E-19 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 539 556 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 4.8E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.70.1320 140 330 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.70.1430 44 800 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:1.20.1640.10 15 509 1.7E-243 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 Gene3D G3DSA:3.30.2090.10 704 792 1.7E-243 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82714 189 267 7.85E-10 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82866 789 1010 3.66E-44 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82714 707 790 6.93E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82693 141 327 1.39E-17 T 31-10-2018 Y89_0171 a84428f6594a68f6663c02b47b9b1001 1015 SUPERFAMILY SSF82866 295 492 8.11E-32 T 31-10-2018 Y89_6102 8e45ca884d6d797964edce40de3682a4 300 SMART SM00448 4 119 9.1E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6102 8e45ca884d6d797964edce40de3682a4 300 Pfam PF00072 Response regulator receiver domain 7 120 5.0E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6102 8e45ca884d6d797964edce40de3682a4 300 Gene3D G3DSA:3.40.50.12740 4 189 5.0E-38 T 31-10-2018 Y89_6102 8e45ca884d6d797964edce40de3682a4 300 SUPERFAMILY SSF52172 1 132 6.26E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 76 2.0E-8 T 31-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 158 4.9E-35 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 SUPERFAMILY SSF46767 78 158 4.05E-31 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 158 1.9E-31 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 Gene3D G3DSA:3.30.160.70 3 75 4.6E-18 T 31-10-2018 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 Gene3D G3DSA:1.10.10.10 76 160 1.0E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 159 41.728 T 31-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Y89_4362 ca24b024ed0e0052bbf948d1b64e6be6 173 SUPERFAMILY SSF53155 5 84 2.94E-16 T 31-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 SUPERFAMILY SSF52283 2 134 1.98E-38 T 31-10-2018 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 1.1E-59 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 SUPERFAMILY SSF51735 102 298 2.16E-59 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 Gene3D G3DSA:3.40.50.720 5 321 3.9E-141 T 31-10-2018 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 Gene3D G3DSA:3.40.50.720 102 297 3.9E-141 T 31-10-2018 Y89_4432 ad777959fb550c4a82a9bfc9f76ae0b2 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 327 3.1E-32 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_4795 4e519f1617ef3ca47ae28c5e3e280a0e 371 Gene3D G3DSA:3.40.50.2000 173 339 9.3E-49 T 31-10-2018 Y89_4795 4e519f1617ef3ca47ae28c5e3e280a0e 371 SUPERFAMILY SSF53756 6 361 6.85E-64 T 31-10-2018 Y89_4795 4e519f1617ef3ca47ae28c5e3e280a0e 371 Pfam PF13439 Glycosyltransferase Family 4 15 175 2.4E-21 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_4795 4e519f1617ef3ca47ae28c5e3e280a0e 371 Gene3D G3DSA:3.40.50.2000 7 353 9.3E-49 T 31-10-2018 Y89_4795 4e519f1617ef3ca47ae28c5e3e280a0e 371 Pfam PF00534 Glycosyl transferases group 1 188 331 3.2E-20 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 197 218 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 221 246 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 68 88 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 107 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 176 196 2.0E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 47 56 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 169 181 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 119 133 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 237 247 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 107 119 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 147 159 4.0E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 51 247 3.1E-88 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 176 191 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 Pfam PF00813 FliP family 51 243 3.4E-79 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_5032 0f1e955b555c36a1631419569e287bf1 250 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 224 236 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF12137 RNA polymerase recycling family C-terminal 588 946 2.6E-139 T 31-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:2.30.30.930 56 113 4.8E-15 T 31-10-2018 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 SUPERFAMILY SSF52540 152 346 2.25E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:3.30.360.80 696 767 3.2E-30 T 31-10-2018 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 SMART SM00490 500 584 1.2E-15 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 2 948 28.072 T 31-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF00271 Helicase conserved C-terminal domain 475 584 4.3E-13 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:2.30.30.140 2 54 1.7E-22 T 31-10-2018 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:3.40.50.10810 149 422 2.7E-87 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 SMART SM00487 149 346 5.0E-19 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Gene3D G3DSA:3.40.50.300 423 616 5.6E-42 T 31-10-2018 Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 SUPERFAMILY SSF52540 270 630 2.92E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1701 effe0640ba47a6d06d9a2964b0f8bf19 948 Pfam PF00176 SNF2 family N-terminal domain 173 356 2.7E-14 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_0161 281c6ffbf9cd9bef94e3629af5eed7b5 316 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 312 4.5E-110 T 31-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 Y89_0161 281c6ffbf9cd9bef94e3629af5eed7b5 316 Pfam PF00962 Adenosine/AMP deaminase 8 310 1.3E-72 T 31-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 Y89_0161 281c6ffbf9cd9bef94e3629af5eed7b5 316 Hamap MF_01962 Adenine deaminase. 4 316 86.737 T 31-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Y89_0161 281c6ffbf9cd9bef94e3629af5eed7b5 316 Gene3D G3DSA:3.20.20.140 1 316 2.4E-103 T 31-10-2018 Y89_0161 281c6ffbf9cd9bef94e3629af5eed7b5 316 SUPERFAMILY SSF51556 2 312 2.69E-84 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF02824 TGS domain 416 475 7.3E-22 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF13328 HD domain 40 202 6.3E-46 T 31-10-2018 IPR003607 HD/PDEase domain Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 69 742 1.6E-189 T 31-10-2018 IPR004811 RelA/SpoT family GO:0015969 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.10.20.30 409 482 2.5E-31 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF109604 18 218 1.79E-49 T 31-10-2018 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF81271 407 475 5.01E-22 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF13291 ACT domain 666 743 2.5E-19 T 31-10-2018 IPR002912 ACT domain Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SMART SM00954 262 372 3.9E-66 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF81301 207 420 2.62E-63 T 31-10-2018 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:1.10.3210.10 13 218 1.1E-45 T 31-10-2018 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Pfam PF04607 Region found in RelA / SpoT proteins 262 370 7.2E-38 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.30.460.10 220 352 5.1E-51 T 31-10-2018 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 SUPERFAMILY SSF55021 667 743 5.0E-15 T 31-10-2018 Y89_4425 9cd9a3d0c8e8eafb8d87e88172a2c980 747 Gene3D G3DSA:3.30.70.260 666 746 4.3E-18 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.7E-12 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 1.7E-12 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 1.7E-12 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 1.7E-12 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 203 221 1.7E-12 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 Pfam PF07690 Major Facilitator Superfamily 18 410 2.6E-55 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 SUPERFAMILY SSF103473 9 485 4.45E-67 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 Gene3D G3DSA:1.20.1720.10 14 227 6.3E-57 T 31-10-2018 Y89_0253 fb1de89506885fb1462ea44f3512d4f4 501 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 419 2.3E-75 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 Gene3D G3DSA:3.40.50.2020 277 440 1.6E-150 T 31-10-2018 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 Pfam PF00156 Phosphoribosyl transferase domain 276 393 5.5E-9 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 Gene3D G3DSA:3.60.20.10 2 412 1.6E-150 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 464 44.742 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 464 1.0E-161 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 PIRSF PIRSF000485 1 481 5.3E-159 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 SUPERFAMILY SSF53271 250 483 1.27E-70 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 SUPERFAMILY SSF56235 2 257 4.55E-70 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1911 fb2c5dfe1b19287cf44507511e221891 501 Pfam PF13522 Glutamine amidotransferase domain 64 208 5.4E-15 T 31-10-2018 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:2.40.50.140 45 139 1.1E-8 T 31-10-2018 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 SMART SM00490 503 587 1.1E-21 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF17191 RecG wedge domain 11 170 1.1E-14 T 31-10-2018 IPR033454 RecG, wedge domain Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 663 7.0E-223 T 31-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF00271 Helicase conserved C-terminal domain 479 586 9.2E-16 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:3.40.50.300 456 628 1.7E-52 T 31-10-2018 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 SUPERFAMILY SSF50249 7 172 2.06E-35 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Pfam PF00270 DEAD/DEAH box helicase 293 430 9.0E-18 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 Gene3D G3DSA:3.40.50.300 208 448 1.0E-78 T 31-10-2018 Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 SUPERFAMILY SSF52540 317 598 3.02E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6083 b6b308f1bce01f26a9413c2abf3802a9 691 SMART SM00487 265 458 5.7E-26 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1278 b0421c789979c3605c355900147762bb 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 302 319 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_1278 b0421c789979c3605c355900147762bb 437 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 28 419 6.8E-136 T 31-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 Y89_1278 b0421c789979c3605c355900147762bb 437 SUPERFAMILY SSF103473 18 432 9.16E-65 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1278 b0421c789979c3605c355900147762bb 437 Gene3D G3DSA:1.20.1250.20 18 437 3.0E-69 T 31-10-2018 Y89_1278 b0421c789979c3605c355900147762bb 437 Pfam PF00083 Sugar (and other) transporter 234 429 3.7E-13 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_1278 b0421c789979c3605c355900147762bb 437 Pfam PF00083 Sugar (and other) transporter 23 232 1.6E-24 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_5009 550d2349a818a487d1aa80392a8586ab 751 Pfam PF07793 Protein of unknown function (DUF1631) 24 745 7.4E-253 T 31-10-2018 IPR012434 Protein of unknown function DUF1631 Y89_3018 4b8f4ea20fc5644356cb195945b8ac3c 442 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 48 285 1.3E-5 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 Y89_3018 4b8f4ea20fc5644356cb195945b8ac3c 442 Gene3D G3DSA:3.20.20.80 41 356 2.3E-45 T 31-10-2018 Y89_3018 4b8f4ea20fc5644356cb195945b8ac3c 442 SUPERFAMILY SSF51445 43 358 2.2E-62 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 251 319 1.4E-16 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 SUPERFAMILY SSF103039 6 230 1.28E-19 T 31-10-2018 IPR028976 CheC-like superfamily Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 3.4E-21 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 3.4E-21 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 3.4E-21 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 3.4E-21 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 SUPERFAMILY SSF101801 247 322 3.14E-14 T 31-10-2018 IPR036429 SpoA-like superfamily Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 Gene3D G3DSA:3.40.1550.10 44 230 2.6E-57 T 31-10-2018 IPR028976 CheC-like superfamily Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 PIRSF PIRSF002888 3 323 1.0E-91 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 319 2.3E-109 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3896 cd00c6d6044b70d67ce0592151621b7f 323 Pfam PF02154 Flagellar motor switch protein FliM 38 229 4.3E-75 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Y89_3570 77b3a80ecdcce5daf4ac17377993b26c 253 Pfam PF03412 Peptidase C39 family 57 192 2.5E-20 T 31-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y89_3570 77b3a80ecdcce5daf4ac17377993b26c 253 Gene3D G3DSA:3.90.70.10 48 201 3.3E-32 T 31-10-2018 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 SUPERFAMILY SSF52540 413 616 1.81E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 TIGRFAM TIGR00595 priA: primosomal protein N' 225 736 9.3E-184 T 31-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 Pfam PF00270 DEAD/DEAH box helicase 207 367 1.8E-14 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 738 25.184 T 31-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 SMART SM00487 199 395 2.7E-25 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 SMART SM00490 496 593 2.0E-9 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 Gene3D G3DSA:3.40.50.300 194 383 4.0E-78 T 31-10-2018 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 Gene3D G3DSA:1.10.8.630 4 117 5.6E-34 T 31-10-2018 Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 SUPERFAMILY SSF52540 200 383 1.33E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5722 e42e5c9835485cdcb75450a626d3f439 739 Pfam PF00271 Helicase conserved C-terminal domain 522 592 4.6E-6 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_2808 0c9358161cdb44be62609185485f7eb9 472 Pfam PF02321 Outer membrane efflux protein 279 458 9.0E-27 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2808 0c9358161cdb44be62609185485f7eb9 472 Pfam PF02321 Outer membrane efflux protein 58 252 3.3E-27 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2808 0c9358161cdb44be62609185485f7eb9 472 SUPERFAMILY SSF56954 2 463 4.45E-104 T 31-10-2018 Y89_2808 0c9358161cdb44be62609185485f7eb9 472 Gene3D G3DSA:2.20.200.10 95 349 9.5E-121 T 31-10-2018 Y89_2808 0c9358161cdb44be62609185485f7eb9 472 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 460 4.6E-103 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_2808 0c9358161cdb44be62609185485f7eb9 472 Gene3D G3DSA:1.20.1600.10 48 461 9.5E-121 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Gene3D G3DSA:3.30.1920.30 222 280 1.9E-90 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 19 504 3.5E-178 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_2826 804a718a7599ccecf7f98a26487948bd 668 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 23 486 1.8E-127 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Pfam PF05954 Phage late control gene D protein (GPD) 30 322 5.3E-84 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 SUPERFAMILY SSF69255 347 434 4.45E-33 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Gene3D G3DSA:2.40.50.230 338 439 4.3E-43 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_2826 804a718a7599ccecf7f98a26487948bd 668 SUPERFAMILY SSF69279 188 347 1.19E-36 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Gene3D G3DSA:3.55.50.10 96 187 1.9E-90 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 SUPERFAMILY SSF69349 424 621 2.43E-46 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 SUPERFAMILY SSF69279 19 183 7.37E-49 T 31-10-2018 Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 560 583 3.8E-6 T 31-10-2018 IPR010609 Gp5, C-terminal Y89_2826 804a718a7599ccecf7f98a26487948bd 668 Gene3D G3DSA:2.30.110.50 20 326 1.9E-90 T 31-10-2018 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.30.70.260 1 80 3.0E-17 T 31-10-2018 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:1.10.8.60 374 440 1.5E-20 T 31-10-2018 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 461 508 1.5E-24 T 31-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 SMART SM00382 222 367 2.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Pfam PF00158 Sigma-54 interaction domain 203 369 2.9E-64 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 416 425 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:1.10.10.60 449 509 3.3E-23 T 31-10-2018 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF46689 456 508 2.45E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.30.450.20 81 186 4.6E-9 T 31-10-2018 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF52540 203 445 1.2E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 226 239 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 SUPERFAMILY SSF55785 80 130 3.29E-5 T 31-10-2018 IPR035965 PAS domain superfamily Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Pfam PF13188 PAS domain 81 133 2.6E-4 T 31-10-2018 IPR000014 PAS domain Y89_2749 0caea87c4a331f85eedb8aedcdb2a4be 511 Gene3D G3DSA:3.40.50.300 190 373 2.3E-64 T 31-10-2018 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 TIGRFAM TIGR03138 QueF: queuine synthase 5 276 3.1E-123 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 PIRSF PIRSF004750 1 276 7.6E-119 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 Gene3D G3DSA:3.30.1130.10 140 276 6.5E-54 T 31-10-2018 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 276 150.391 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 Pfam PF14489 QueF-like protein 190 262 7.1E-24 T 31-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 16 126 1.6E-46 T 31-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 Gene3D G3DSA:3.30.1130.10 16 134 1.2E-43 T 31-10-2018 Y89_2223 ec2feaf0cca8e2f96213de194affcb98 276 SUPERFAMILY SSF55620 132 259 1.85E-10 T 31-10-2018 Y89_6328 46edb9856ac960d17cb01ad254bacef2 235 Gene3D G3DSA:3.90.75.20 110 207 3.9E-8 T 31-10-2018 Y89_6328 46edb9856ac960d17cb01ad254bacef2 235 SUPERFAMILY SSF54060 132 204 3.06E-12 T 31-10-2018 Y89_6328 46edb9856ac960d17cb01ad254bacef2 235 Pfam PF13392 HNH endonuclease 158 201 1.1E-15 T 31-10-2018 IPR003615 HNH nuclease Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 4 1024 14.0 T 31-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 Pfam PF14579 Helix-hairpin-helix motif 767 855 8.5E-22 T 31-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 SMART SM00481 5 72 4.1E-10 T 31-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 SUPERFAMILY SSF89550 4 185 1.96E-10 T 31-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 Pfam PF02811 PHP domain 6 121 6.2E-18 T 31-10-2018 IPR004013 PHP domain GO:0003824 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 968 7.8E-171 T 31-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 Gene3D G3DSA:3.20.20.140 1 245 1.6E-60 T 31-10-2018 Y89_4764 7d26e5c9bb547564f3a28f099d047a99 1024 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 268 692 6.8E-148 T 31-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_0104 19fd4445a0223e1547a8d8173967e61c 460 Gene3D G3DSA:2.60.200.60 75 161 7.7E-17 T 31-10-2018 Y89_0104 19fd4445a0223e1547a8d8173967e61c 460 Pfam PF05488 PAAR motif 80 151 1.8E-12 T 31-10-2018 IPR008727 PAAR motif Y89_0118 9da076514e60de6fc56a96ebe0bfbe9a 184 PIRSF PIRSF005413 1 182 6.4E-64 T 31-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0118 9da076514e60de6fc56a96ebe0bfbe9a 184 SUPERFAMILY SSF110111 54 174 1.12E-46 T 31-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0118 9da076514e60de6fc56a96ebe0bfbe9a 184 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 29 171 1.6E-49 T 31-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0118 9da076514e60de6fc56a96ebe0bfbe9a 184 Gene3D G3DSA:2.60.370.10 52 183 6.4E-44 T 31-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3908 69c83907b5584af1a258a29b25084bab 69 SUPERFAMILY SSF47413 6 47 6.82E-5 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 Gene3D G3DSA:1.10.287.950 61 342 1.4E-37 T 31-10-2018 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 SMART SM00283 95 344 3.5E-5 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 169 316 3.9E-28 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 195 222 1.4E-16 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 224 253 1.4E-16 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0192 8dae86d053c030642677ea80cc367b1e 390 SUPERFAMILY SSF58104 88 336 4.19E-37 T 31-10-2018 Y89_0280 47f353826cd017c7ffd2f5759f6b9adc 93 Pfam PF12728 Helix-turn-helix domain 28 79 9.0E-12 T 31-10-2018 Y89_0280 47f353826cd017c7ffd2f5759f6b9adc 93 SUPERFAMILY SSF46955 28 79 3.42E-10 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_3186 c71972f16272493d413deaaed5e34c47 282 Gene3D G3DSA:3.40.50.150 6 231 1.8E-25 T 31-10-2018 Y89_3186 c71972f16272493d413deaaed5e34c47 282 Pfam PF13649 Methyltransferase domain 41 136 1.0E-13 T 31-10-2018 Y89_3186 c71972f16272493d413deaaed5e34c47 282 SUPERFAMILY SSF53335 12 191 6.02E-28 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 2 347 8.4E-109 T 31-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 SUPERFAMILY SSF56059 97 292 2.65E-56 T 31-10-2018 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 Pfam PF02222 ATP-grasp domain 106 272 9.8E-58 T 31-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 344 39.13 T 31-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 Gene3D G3DSA:3.30.470.20 172 360 5.5E-62 T 31-10-2018 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 SUPERFAMILY SSF52440 2 94 2.45E-22 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 Gene3D G3DSA:3.30.1490.20 102 171 3.7E-26 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 SUPERFAMILY SSF51246 297 356 5.81E-13 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_6164 01aadc65dce05d1d1f83e235b5b1a1b2 360 Gene3D G3DSA:3.40.50.20 1 101 4.7E-33 T 31-10-2018 Y89_6356 82673cb15e6665a6c0c47e0232b1ded7 526 SUPERFAMILY SSF52540 104 504 2.49E-55 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6356 82673cb15e6665a6c0c47e0232b1ded7 526 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 321 335 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_6356 82673cb15e6665a6c0c47e0232b1ded7 526 Pfam PF00437 Type II/IV secretion system protein 112 385 1.6E-40 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_6356 82673cb15e6665a6c0c47e0232b1ded7 526 Gene3D G3DSA:3.40.50.300 219 506 1.5E-73 T 31-10-2018 Y89_6356 82673cb15e6665a6c0c47e0232b1ded7 526 Gene3D G3DSA:3.30.450.90 88 215 1.1E-11 T 31-10-2018 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 SUPERFAMILY SSF56935 157 804 8.02E-111 T 31-10-2018 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Gene3D G3DSA:2.170.130.10 155 275 1.4E-21 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Gene3D G3DSA:3.55.50.30 43 115 1.1E-24 T 31-10-2018 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 787 804 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 164 804 7.3E-111 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 SMART SM00965 65 116 2.8E-14 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Pfam PF07660 Secretin and TonB N terminus short domain 65 115 3.4E-7 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Pfam PF07715 TonB-dependent Receptor Plug Domain 162 260 1.9E-16 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Gene3D G3DSA:2.40.170.20 276 804 5.8E-81 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_3413 6d4e7cd7bf075dd69c6806794a46da77 804 Pfam PF00593 TonB dependent receptor 383 801 3.8E-41 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 SUPERFAMILY SSF46626 105 200 5.67E-21 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Gene3D G3DSA:1.10.760.10 103 201 4.9E-29 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Gene3D G3DSA:1.10.760.10 21 102 1.0E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 SUPERFAMILY SSF46626 13 99 1.73E-21 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 PIRSF PIRSF000005 1 201 2.2E-62 T 31-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Pfam PF00034 Cytochrome c 112 199 1.3E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_6230 95eaa55a04ef0dcc2ea73a45f4c8535f 201 Pfam PF00034 Cytochrome c 27 100 9.8E-8 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5621 46c633bf861e7f7d8e0094dc66c1697e 180 Gene3D G3DSA:3.30.420.10 1 180 1.8E-75 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_5621 46c633bf861e7f7d8e0094dc66c1697e 180 SUPERFAMILY SSF53098 2 179 2.74E-49 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_5621 46c633bf861e7f7d8e0094dc66c1697e 180 Hamap MF_00045 Oligoribonuclease [orn]. 2 180 44.191 T 31-10-2018 IPR022894 Oligoribonuclease GO:0000175 Y89_5621 46c633bf861e7f7d8e0094dc66c1697e 180 Pfam PF00929 Exonuclease 8 169 4.8E-34 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_5621 46c633bf861e7f7d8e0094dc66c1697e 180 SMART SM00479 6 179 1.1E-22 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_4408 092226fc64ef7a8cca956cdc3c0b9d4a 198 Gene3D G3DSA:3.40.50.360 1 198 8.3E-69 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4408 092226fc64ef7a8cca956cdc3c0b9d4a 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 6 196 5.2E-45 T 31-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Y89_4408 092226fc64ef7a8cca956cdc3c0b9d4a 198 ProSitePatterns PS00201 Flavodoxin signature. 8 24 - T 31-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Y89_4408 092226fc64ef7a8cca956cdc3c0b9d4a 198 SUPERFAMILY SSF52218 4 196 3.01E-64 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4408 092226fc64ef7a8cca956cdc3c0b9d4a 198 Pfam PF03358 NADPH-dependent FMN reductase 13 141 4.0E-9 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 277 305 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Gene3D G3DSA:3.30.470.20 122 330 4.2E-72 T 31-10-2018 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 SUPERFAMILY SSF56059 133 334 2.65E-54 T 31-10-2018 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 SUPERFAMILY SSF52440 5 132 2.49E-26 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 PIRSF PIRSF039102 3 343 2.2E-98 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Gene3D G3DSA:3.40.50.20 3 121 2.6E-21 T 31-10-2018 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 335 35.47 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 331 6.8E-88 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Gene3D G3DSA:3.30.1490.20 148 211 4.2E-72 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Pfam PF01820 D-ala D-ala ligase N-terminus 7 123 7.8E-22 T 31-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 Pfam PF07478 D-ala D-ala ligase C-terminus 146 330 3.2E-51 T 31-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_0821 0bbd2e9b052e9c6b14d19e9afe92689b 346 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 100 111 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_3753 c3d38432c869f0bcae47c84e815af0c5 122 PIRSF PIRSF000169 1 122 1.4E-43 T 31-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Y89_3753 c3d38432c869f0bcae47c84e815af0c5 122 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 120 3.3E-34 T 31-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Y89_3753 c3d38432c869f0bcae47c84e815af0c5 122 Gene3D G3DSA:1.20.1300.10 1 122 6.9E-33 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3753 c3d38432c869f0bcae47c84e815af0c5 122 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 113 9.1E-7 T 31-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3753 c3d38432c869f0bcae47c84e815af0c5 122 SUPERFAMILY SSF81343 4 122 1.33E-27 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4774 b9a384125c5988f72f7ca5b0eb53f1ad 538 SUPERFAMILY SSF58104 77 347 2.62E-56 T 31-10-2018 Y89_4774 b9a384125c5988f72f7ca5b0eb53f1ad 538 Gene3D G3DSA:1.10.287.950 59 355 1.3E-55 T 31-10-2018 Y89_4774 b9a384125c5988f72f7ca5b0eb53f1ad 538 SMART SM00283 85 343 6.7E-46 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4774 b9a384125c5988f72f7ca5b0eb53f1ad 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 131 310 9.8E-41 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 607 728 1.1E-35 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 90 353 6.7E-41 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 SUPERFAMILY SSF81653 122 229 2.48E-30 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 SUPERFAMILY SSF81660 339 539 2.18E-54 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 SUPERFAMILY SSF56784 330 740 3.04E-62 T 31-10-2018 IPR036412 HAD-like superfamily Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 SMART SM00831 11 84 2.3E-29 T 31-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Gene3D G3DSA:1.20.1110.10 62 892 1.9E-282 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 SUPERFAMILY SSF81665 11 898 4.05E-120 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Gene3D G3DSA:2.70.150.10 26 234 1.9E-282 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Pfam PF00122 E1-E2 ATPase 121 312 3.6E-52 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Gene3D G3DSA:3.40.50.1000 329 681 1.9E-282 T 31-10-2018 IPR023214 HAD superfamily Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 334 340 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Gene3D G3DSA:3.40.1110.10 342 542 1.9E-282 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 668 693 6.0E-20 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 636 652 6.0E-20 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 608 624 6.0E-20 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 493 511 6.0E-20 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 332 346 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 169 183 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 535 546 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 672 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 557 567 1.5E-41 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Pfam PF00689 Cation transporting ATPase, C-terminus 721 893 4.2E-45 T 31-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 329 650 3.0E-21 T 31-10-2018 Y89_3910 42f05c43c9443d4f9a747ea8ff255c23 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 13 78 3.7E-14 T 31-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 PIRSF PIRSF016578 15 94 0.09 T 31-10-2018 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 PIRSF PIRSF016578 149 391 1.8E-10 T 31-10-2018 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 SUPERFAMILY SSF56645 7 238 6.54E-77 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 345 364 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 132 1.1E-34 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 SUPERFAMILY SSF47203 243 390 3.54E-42 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:1.10.540.10 2 134 3.8E-42 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 227 6.2E-22 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 385 9.5E-28 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:2.40.110.10 135 239 3.6E-38 T 31-10-2018 Y89_0468 8030e68d0852747dddc47237a6bc3920 393 Gene3D G3DSA:1.20.140.10 241 393 6.3E-42 T 31-10-2018 Y89_0143 bef934f43bec0703f75c599073275210 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 481 3.3E-210 T 31-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Y89_0143 bef934f43bec0703f75c599073275210 497 Gene3D G3DSA:3.40.605.10 22 458 1.7E-155 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0143 bef934f43bec0703f75c599073275210 497 Gene3D G3DSA:3.40.309.10 248 450 1.7E-155 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0143 bef934f43bec0703f75c599073275210 497 Pfam PF00171 Aldehyde dehydrogenase family 15 477 8.6E-140 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_0143 bef934f43bec0703f75c599073275210 497 SUPERFAMILY SSF53720 3 483 5.76E-149 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0143 bef934f43bec0703f75c599073275210 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_4940 c0b82c26858270dedeab9e498ba386cd 79 PIRSF PIRSF003113 1 79 5.8E-16 T 31-10-2018 IPR002634 BolA protein Y89_4940 c0b82c26858270dedeab9e498ba386cd 79 Gene3D G3DSA:3.30.300.90 1 79 1.9E-23 T 31-10-2018 Y89_4940 c0b82c26858270dedeab9e498ba386cd 79 Pfam PF01722 BolA-like protein 22 70 9.5E-8 T 31-10-2018 IPR002634 BolA protein Y89_4940 c0b82c26858270dedeab9e498ba386cd 79 SUPERFAMILY SSF82657 1 78 1.22E-21 T 31-10-2018 IPR036065 BolA-like superfamily Y89_0755 9b9df0300477dc738c38223795cda693 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.331 T 31-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Y89_0755 9b9df0300477dc738c38223795cda693 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 8.4E-68 T 31-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Y89_0755 9b9df0300477dc738c38223795cda693 156 Gene3D G3DSA:1.10.455.10 2 155 1.3E-60 T 31-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Y89_0755 9b9df0300477dc738c38223795cda693 156 PIRSF PIRSF002122 2 156 2.6E-59 T 31-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Y89_0755 9b9df0300477dc738c38223795cda693 156 SUPERFAMILY SSF47973 6 149 7.72E-60 T 31-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Y89_0755 9b9df0300477dc738c38223795cda693 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 31-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0755 9b9df0300477dc738c38223795cda693 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 7.7E-67 T 31-10-2018 IPR023798 Ribosomal protein S7 domain Y89_5748 763d15a090019a33143b4b6921deae5b 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 257 4.4E-57 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5748 763d15a090019a33143b4b6921deae5b 266 SUPERFAMILY SSF53850 1 258 1.71E-67 T 31-10-2018 Y89_5748 763d15a090019a33143b4b6921deae5b 266 Gene3D G3DSA:3.40.190.10 36 256 3.8E-69 T 31-10-2018 Y89_5748 763d15a090019a33143b4b6921deae5b 266 SMART SM00079 35 258 1.6E-5 T 31-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Y89_5748 763d15a090019a33143b4b6921deae5b 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_5748 763d15a090019a33143b4b6921deae5b 266 Gene3D G3DSA:3.40.190.10 120 218 3.8E-69 T 31-10-2018 Y89_5748 763d15a090019a33143b4b6921deae5b 266 SMART SM00062 35 259 2.2E-57 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF52156 621 747 5.75E-34 T 31-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 ProSitePatterns PS01176 Initiation factor 2 signature. 791 813 - T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.30.56.50 2 51 1.4E-12 T 31-10-2018 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.40.50.10050 634 740 2.2E-33 T 31-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:2.40.30.10 512 628 6.8E-40 T 31-10-2018 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 343 499 2.7E-31 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF46955 3 51 5.86E-10 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 838 17.304 T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF50447 742 838 2.75E-32 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF52540 332 510 1.71E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:2.40.30.10 741 839 2.5E-32 T 31-10-2018 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Gene3D G3DSA:3.40.50.300 337 511 2.2E-70 T 31-10-2018 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 259 839 1.4E-263 T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 SUPERFAMILY SSF50447 513 595 1.79E-26 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 265 315 1.9E-14 T 31-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF00009 Elongation factor Tu GTP binding domain 344 501 2.0E-34 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF11987 Translation-initiation factor 2 625 730 2.0E-34 T 31-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Y89_5357 fd37f6992834ca5bc961aa4a5cebf29f 840 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 95 2.5E-11 T 31-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 Gene3D G3DSA:3.40.50.150 1 146 7.2E-34 T 31-10-2018 Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 331 41.205 T 31-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 Pfam PF05175 Methyltransferase small domain 161 327 6.7E-54 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 260 266 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 Pfam PF08468 Methyltransferase small domain N-terminal 5 153 3.1E-40 T 31-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 SUPERFAMILY SSF53335 93 306 7.23E-27 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5236 6c9a39f8e9574bdc4cc60401062355e5 332 Gene3D G3DSA:3.40.50.150 148 332 2.0E-43 T 31-10-2018 Y89_0745 833cfb1d858a815fe02652457ae86578 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 397 5.9E-227 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0745 833cfb1d858a815fe02652457ae86578 397 SUPERFAMILY SSF52540 6 222 4.15E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0745 833cfb1d858a815fe02652457ae86578 397 SUPERFAMILY SSF50465 301 396 3.74E-36 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y89_0745 833cfb1d858a815fe02652457ae86578 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 204 2.6E-57 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 1.1E-33 T 31-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Y89_0745 833cfb1d858a815fe02652457ae86578 397 Pfam PF03144 Elongation factor Tu domain 2 228 296 1.2E-15 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 Gene3D G3DSA:2.40.30.10 209 337 2.2E-53 T 31-10-2018 Y89_0745 833cfb1d858a815fe02652457ae86578 397 Gene3D G3DSA:3.40.50.300 1 206 6.3E-72 T 31-10-2018 Y89_0745 833cfb1d858a815fe02652457ae86578 397 SUPERFAMILY SSF50447 208 304 1.56E-29 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_0745 833cfb1d858a815fe02652457ae86578 397 Gene3D G3DSA:2.40.30.10 341 396 1.2E-29 T 31-10-2018 Y89_0745 833cfb1d858a815fe02652457ae86578 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_0745 833cfb1d858a815fe02652457ae86578 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 3.1E-14 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_0745 833cfb1d858a815fe02652457ae86578 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 59.831 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Gene3D G3DSA:3.40.50.980 190 363 5.7E-58 T 31-10-2018 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 SUPERFAMILY SSF56801 21 541 1.23E-133 T 31-10-2018 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Pfam PF00501 AMP-binding enzyme 41 445 4.1E-86 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Gene3D G3DSA:3.30.300.310 441 545 7.1E-30 T 31-10-2018 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 ProSitePatterns PS00455 Putative AMP-binding domain signature. 197 208 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 454 529 3.7E-15 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Gene3D G3DSA:2.30.38.10 364 439 1.3E-31 T 31-10-2018 Y89_0794 622c4b57e428e8e6a8a55834362fced8 547 Gene3D G3DSA:3.40.50.980 31 185 8.8E-37 T 31-10-2018 Y89_4909 1445bf6035a23de79223b53174bfa096 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 312 39.404 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Y89_4909 1445bf6035a23de79223b53174bfa096 313 SUPERFAMILY SSF53335 7 312 2.94E-48 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4909 1445bf6035a23de79223b53174bfa096 313 PIRSF PIRSF004486 1 313 1.2E-102 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Y89_4909 1445bf6035a23de79223b53174bfa096 313 Gene3D G3DSA:1.10.150.170 114 216 5.4E-104 T 31-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Y89_4909 1445bf6035a23de79223b53174bfa096 313 SUPERFAMILY SSF81799 116 215 2.49E-34 T 31-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Y89_4909 1445bf6035a23de79223b53174bfa096 313 Gene3D G3DSA:3.40.50.150 10 311 5.4E-104 T 31-10-2018 Y89_4909 1445bf6035a23de79223b53174bfa096 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 311 2.2E-113 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Y89_4909 1445bf6035a23de79223b53174bfa096 313 Pfam PF01795 MraW methylase family 5 311 7.2E-111 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Y89_6176 b634378d02826209afadebdb9be7aa51 316 Gene3D G3DSA:1.10.10.10 9 76 4.4E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6176 b634378d02826209afadebdb9be7aa51 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 7.5E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6176 b634378d02826209afadebdb9be7aa51 316 Pfam PF03466 LysR substrate binding domain 94 298 1.2E-51 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6176 b634378d02826209afadebdb9be7aa51 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 9.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6176 b634378d02826209afadebdb9be7aa51 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 9.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6176 b634378d02826209afadebdb9be7aa51 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6176 b634378d02826209afadebdb9be7aa51 316 SUPERFAMILY SSF53850 96 299 3.14E-45 T 31-10-2018 Y89_6176 b634378d02826209afadebdb9be7aa51 316 Gene3D G3DSA:3.40.190.290 97 304 1.1E-42 T 31-10-2018 Y89_6176 b634378d02826209afadebdb9be7aa51 316 SUPERFAMILY SSF46785 5 85 7.07E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 SUPERFAMILY SSF54373 297 401 1.5E-17 T 31-10-2018 Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 Gene3D G3DSA:3.50.50.60 24 460 4.4E-84 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 PRINTS PR00757 Flavin-containing amine oxidase signature 29 48 1.6E-10 T 31-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 PRINTS PR00757 Flavin-containing amine oxidase signature 403 425 1.6E-10 T 31-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 PRINTS PR00757 Flavin-containing amine oxidase signature 434 451 1.6E-10 T 31-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 Pfam PF01593 Flavin containing amine oxidoreductase 37 452 2.6E-47 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y89_0444 b6f9f92e232572fdf2cc930855c6e74f 496 SUPERFAMILY SSF51905 26 456 1.78E-55 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1542 37820c9d28444fdfbb451c9f9565b678 441 SUPERFAMILY SSF48537 147 366 1.05E-38 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 Y89_1542 37820c9d28444fdfbb451c9f9565b678 441 Gene3D G3DSA:1.10.575.10 201 288 1.5E-5 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 Y89_0537 cee956fe6fec56d09849cca8568badc2 392 SUPERFAMILY SSF51004 26 390 3.53E-75 T 31-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Y89_0537 cee956fe6fec56d09849cca8568badc2 392 Pfam PF02239 Cytochrome D1 heme domain 25 386 2.9E-147 T 31-10-2018 Y89_0537 cee956fe6fec56d09849cca8568badc2 392 Gene3D G3DSA:2.140.10.20 19 390 7.6E-53 T 31-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Y89_5341 7307f4201708fed743e1e4b620d7ec3e 162 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 134 5.0E-36 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_5341 7307f4201708fed743e1e4b620d7ec3e 162 Gene3D G3DSA:3.30.70.560 2 158 3.4E-54 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_5341 7307f4201708fed743e1e4b620d7ec3e 162 SUPERFAMILY SSF55083 3 157 9.68E-54 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_5341 7307f4201708fed743e1e4b620d7ec3e 162 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 134 1.5E-43 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_5341 7307f4201708fed743e1e4b620d7ec3e 162 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_1614 90b05a54b64468a7aa298774003573be 275 Pfam PF12679 ABC-2 family transporter protein 5 273 7.7E-38 T 31-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 Pfam PF02779 Transketolase, pyrimidine binding domain 4 189 5.6E-56 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 Gene3D G3DSA:3.40.50.920 202 335 5.8E-47 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 Gene3D G3DSA:3.40.50.970 3 201 7.8E-83 T 31-10-2018 Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 SMART SM00861 5 189 1.5E-58 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 SUPERFAMILY SSF52518 3 213 6.87E-64 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 Pfam PF02780 Transketolase, C-terminal domain 203 325 7.1E-44 T 31-10-2018 IPR033248 Transketolase, C-terminal domain Y89_0871 7650e036f9f5caf0eb2cc32f3f388a5c 339 SUPERFAMILY SSF52922 198 333 6.02E-42 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_5412 e5536a46bc9d43a295388672cb06e7ce 266 SUPERFAMILY SSF53335 54 249 3.59E-28 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5412 e5536a46bc9d43a295388672cb06e7ce 266 Pfam PF08241 Methyltransferase domain 63 160 6.6E-15 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_5412 e5536a46bc9d43a295388672cb06e7ce 266 Gene3D G3DSA:3.40.50.150 48 249 4.1E-29 T 31-10-2018 Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 83 1.2E-15 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 SUPERFAMILY SSF52833 6 104 1.1E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 SUPERFAMILY SSF47616 78 205 2.56E-27 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Gene3D G3DSA:3.40.30.10 9 193 2.5E-75 T 31-10-2018 Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 191 5.6E-8 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_4917 7a01069d7bd9ceaeff32e2fa4867ad9a 205 Gene3D G3DSA:1.20.1050.10 86 190 2.5E-75 T 31-10-2018 Y89_5258 1033571216109fce47f5ef175da4b66c 427 Pfam PF00860 Permease family 12 378 1.1E-92 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_5258 1033571216109fce47f5ef175da4b66c 427 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 327 347 - T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_5258 1033571216109fce47f5ef175da4b66c 427 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 407 9.2E-111 T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_4661 5d05cf9a9943d24973c583f5a196c07a 182 Pfam PF11072 Protein of unknown function (DUF2859) 34 180 5.9E-54 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_4661 5d05cf9a9943d24973c583f5a196c07a 182 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 78 182 1.1E-42 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_4512 e064d60a2d6ee4d6af486b66e49a6918 199 PIRSF PIRSF000239 1 198 6.5E-54 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4512 e064d60a2d6ee4d6af486b66e49a6918 199 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 159 192 1.4E-12 T 31-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4512 e064d60a2d6ee4d6af486b66e49a6918 199 Pfam PF00578 AhpC/TSA family 5 138 9.8E-34 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4512 e064d60a2d6ee4d6af486b66e49a6918 199 Gene3D G3DSA:3.40.30.10 1 196 8.0E-72 T 31-10-2018 Y89_4512 e064d60a2d6ee4d6af486b66e49a6918 199 SUPERFAMILY SSF52833 3 193 3.43E-64 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1356 669c05703d1c5136cb0f5c333c746b29 615 Pfam PF09822 ABC-type uncharacterized transport system 33 300 2.7E-68 T 31-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 SUPERFAMILY SSF46894 196 258 3.03E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 SMART SM00421 199 256 3.0E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 Gene3D G3DSA:1.10.10.10 156 260 1.1E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 4.7E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 4.7E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 4.7E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 216 243 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1427 25f872dd2fc6076195a5d01a68b23ab3 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 252 9.8E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_6323 2c0b4980efe46bcc312712036439462c 288 Gene3D G3DSA:3.40.50.300 2 269 2.6E-47 T 31-10-2018 Y89_6323 2c0b4980efe46bcc312712036439462c 288 Pfam PF13614 AAA domain 4 158 4.9E-25 T 31-10-2018 IPR025669 AAA domain Y89_6323 2c0b4980efe46bcc312712036439462c 288 SUPERFAMILY SSF52540 8 266 3.61E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 SUPERFAMILY SSF48435 26 475 3.53E-129 T 31-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 Pfam PF01464 Transglycosylase SLT domain 485 596 9.3E-28 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 Gene3D G3DSA:1.10.530.10 472 637 2.6E-47 T 31-10-2018 Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 SUPERFAMILY SSF53955 478 636 2.97E-45 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 Pfam PF14718 Soluble lytic murein transglycosylase L domain 404 470 6.1E-17 T 31-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Y89_1999 b10bf4230ebf3ff1d8f223bdcb396495 642 Gene3D G3DSA:1.25.20.10 25 384 6.9E-103 T 31-10-2018 Y89_2368 f65613d6dd1c12f56cec605aed3cc0f0 228 Pfam PF01965 DJ-1/PfpI family 28 224 2.9E-14 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_2368 f65613d6dd1c12f56cec605aed3cc0f0 228 Gene3D G3DSA:3.40.50.880 2 227 5.5E-67 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_2368 f65613d6dd1c12f56cec605aed3cc0f0 228 SUPERFAMILY SSF52317 1 227 2.2E-68 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 1.6E-92 T 31-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 SUPERFAMILY SSF50447 1 208 1.24E-81 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 207 40.239 T 31-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Pfam PF00297 Ribosomal protein L3 44 182 3.3E-16 T 31-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Gene3D G3DSA:2.40.50.620 33 93 3.6E-15 T 31-10-2018 Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 31-10-2018 IPR019926 Ribosomal protein L3, conserved site Y89_0759 c5c86202de5c0ef2ca46c2a2421e4f3d 211 Gene3D G3DSA:2.40.30.10 128 210 8.8E-19 T 31-10-2018 Y89_0543 7addca5974c608da2ecf629a4b428f4b 85 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 6 74 3.7E-12 T 31-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 Y89_4181 93cbbfc2387d81fcbdd27bc22c2e4f05 198 PIRSF PIRSF000013 1 198 5.2E-109 T 31-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 Y89_4181 93cbbfc2387d81fcbdd27bc22c2e4f05 198 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 18 192 2.4E-76 T 31-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal Y89_4181 93cbbfc2387d81fcbdd27bc22c2e4f05 198 Gene3D G3DSA:1.10.3820.10 19 195 1.0E-35 T 31-10-2018 IPR038266 NapC/NirT cytochrome c superfamily Y89_4181 93cbbfc2387d81fcbdd27bc22c2e4f05 198 SUPERFAMILY SSF48695 15 198 5.85E-67 T 31-10-2018 IPR036280 Multiheme cytochrome superfamily Y89_4181 93cbbfc2387d81fcbdd27bc22c2e4f05 198 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 8 193 8.8E-104 T 31-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 Gene3D G3DSA:1.10.10.10 3 87 4.1E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 SUPERFAMILY SSF46785 1 111 8.77E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 SUPERFAMILY SSF53850 91 288 5.12E-37 T 31-10-2018 Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 Pfam PF03466 LysR substrate binding domain 91 285 3.2E-36 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-14 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1315 5abcf013a0f47f78152817bc7a9ab234 301 Gene3D G3DSA:3.40.190.290 91 285 8.6E-36 T 31-10-2018 Y89_1595 137893beae7a1acd36d0669a92f3c588 88 Pfam PF07130 YebG protein 1 72 2.6E-26 T 31-10-2018 IPR009813 Uncharacterised protein family YebG Y89_1595 137893beae7a1acd36d0669a92f3c588 88 Gene3D G3DSA:1.10.10.710 19 88 1.2E-30 T 31-10-2018 IPR038627 YebG-like superfamily Y89_3182 1b2b21f76a1fc338b2a9bd336a4fd9f9 397 Pfam PF07690 Major Facilitator Superfamily 215 383 3.8E-11 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3182 1b2b21f76a1fc338b2a9bd336a4fd9f9 397 Pfam PF07690 Major Facilitator Superfamily 19 201 3.6E-23 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3182 1b2b21f76a1fc338b2a9bd336a4fd9f9 397 SUPERFAMILY SSF103473 11 387 1.24E-54 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3182 1b2b21f76a1fc338b2a9bd336a4fd9f9 397 Gene3D G3DSA:1.20.1250.20 6 381 3.8E-46 T 31-10-2018 Y89_2058 afa623817ec950b60b55ce359572eff8 210 Hamap MF_00165 Thymidylate kinase [tmk]. 4 205 30.132 T 31-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Y89_2058 afa623817ec950b60b55ce359572eff8 210 Gene3D G3DSA:3.40.50.300 1 210 5.9E-70 T 31-10-2018 Y89_2058 afa623817ec950b60b55ce359572eff8 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 195 2.8E-52 T 31-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Y89_2058 afa623817ec950b60b55ce359572eff8 210 SUPERFAMILY SSF52540 3 207 1.65E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2058 afa623817ec950b60b55ce359572eff8 210 Pfam PF02223 Thymidylate kinase 8 195 3.8E-48 T 31-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 Y89_3595 449f40beb576660e126f0529f045b89e 714 Gene3D G3DSA:3.90.226.10 1 315 3.6E-102 T 31-10-2018 Y89_3595 449f40beb576660e126f0529f045b89e 714 SUPERFAMILY SSF51735 316 497 1.55E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3595 449f40beb576660e126f0529f045b89e 714 Gene3D G3DSA:3.40.50.720 316 499 4.5E-65 T 31-10-2018 Y89_3595 449f40beb576660e126f0529f045b89e 714 Gene3D G3DSA:1.10.1040.50 500 706 7.0E-62 T 31-10-2018 Y89_3595 449f40beb576660e126f0529f045b89e 714 SUPERFAMILY SSF48179 498 640 1.7E-21 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3595 449f40beb576660e126f0529f045b89e 714 SUPERFAMILY SSF52096 3 297 8.93E-62 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3595 449f40beb576660e126f0529f045b89e 714 SUPERFAMILY SSF48179 622 714 3.4E-18 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3595 449f40beb576660e126f0529f045b89e 714 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 203 7.3E-32 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_3595 449f40beb576660e126f0529f045b89e 714 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 499 599 3.0E-19 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_3595 449f40beb576660e126f0529f045b89e 714 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 2.0E-59 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2517 8286fc228bab220555410104337b4e8b 232 Pfam PF01144 Coenzyme A transferase 7 216 1.9E-75 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_2517 8286fc228bab220555410104337b4e8b 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 31-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 Y89_2517 8286fc228bab220555410104337b4e8b 232 SUPERFAMILY SSF100950 2 228 6.98E-87 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_2517 8286fc228bab220555410104337b4e8b 232 Gene3D G3DSA:3.40.1080.10 1 227 2.1E-96 T 31-10-2018 Y89_2517 8286fc228bab220555410104337b4e8b 232 SMART SM00882 5 217 2.3E-92 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_2517 8286fc228bab220555410104337b4e8b 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 217 2.1E-79 T 31-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Y89_2228 055472011342ed7825bad41742dae46f 134 Pfam PF13279 Thioesterase-like superfamily 14 133 1.4E-14 T 31-10-2018 Y89_2228 055472011342ed7825bad41742dae46f 134 SUPERFAMILY SSF54637 5 133 4.83E-32 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_2228 055472011342ed7825bad41742dae46f 134 Gene3D G3DSA:3.10.129.10 5 134 2.8E-41 T 31-10-2018 Y89_1079 8cd87e0c1f8b60066290dd2f0282031e 192 Pfam PF13302 Acetyltransferase (GNAT) domain 17 158 6.7E-33 T 31-10-2018 IPR000182 GNAT domain Y89_1079 8cd87e0c1f8b60066290dd2f0282031e 192 SUPERFAMILY SSF55729 11 159 8.58E-39 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1079 8cd87e0c1f8b60066290dd2f0282031e 192 Gene3D G3DSA:3.40.630.30 3 170 2.7E-44 T 31-10-2018 Y89_6232 bf562ad427a62e24584d02afc192f652 215 Pfam PF01926 50S ribosome-binding GTPase 33 150 3.2E-17 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_6232 bf562ad427a62e24584d02afc192f652 215 SUPERFAMILY SSF52540 22 202 3.87E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6232 bf562ad427a62e24584d02afc192f652 215 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 19 202 27.053 T 31-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Y89_6232 bf562ad427a62e24584d02afc192f652 215 Gene3D G3DSA:3.40.50.300 10 211 3.1E-48 T 31-10-2018 Y89_6232 bf562ad427a62e24584d02afc192f652 215 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 14 198 2.0E-69 T 31-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 344 2.6E-71 T 31-10-2018 IPR000523 Magnesium chelatase ChlI domain Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 SMART SM00382 210 348 4.3E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 SUPERFAMILY SSF54211 8 169 2.84E-35 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 Gene3D G3DSA:3.40.50.300 187 349 3.5E-37 T 31-10-2018 Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 Gene3D G3DSA:3.30.230.10 23 168 9.8E-11 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 SUPERFAMILY SSF52540 187 343 1.42E-29 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 344 1.9E-138 T 31-10-2018 IPR004482 Mg chelatase-related protein Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 7.8E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 316 329 7.8E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 288 302 7.8E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Y89_5979 e3e430082b1bde818955d53a1d0e65f3 357 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.3E-43 T 31-10-2018 Y89_5755 3789615e3c2ad09e4fac8fa815867b77 116 Gene3D G3DSA:3.30.1330.40 1 116 1.0E-39 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_5755 3789615e3c2ad09e4fac8fa815867b77 116 Pfam PF01042 Endoribonuclease L-PSP 5 114 1.0E-24 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_5755 3789615e3c2ad09e4fac8fa815867b77 116 SUPERFAMILY SSF55298 4 115 6.75E-31 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_1679 f99206236d45e6b3459108c3d1d56208 304 Gene3D G3DSA:3.40.50.720 13 279 6.7E-69 T 31-10-2018 Y89_1679 f99206236d45e6b3459108c3d1d56208 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.1E-16 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.1E-16 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.1E-16 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.1E-16 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 2.1E-16 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 Pfam PF00106 short chain dehydrogenase 14 204 5.4E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1679 f99206236d45e6b3459108c3d1d56208 304 SUPERFAMILY SSF51735 8 289 6.84E-60 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 SUPERFAMILY SSF56601 251 607 1.59E-102 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 607 1.7E-237 T 31-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 SUPERFAMILY SSF56519 56 250 4.19E-53 T 31-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 604 3.5E-75 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Gene3D G3DSA:3.40.710.10 250 623 1.9E-103 T 31-10-2018 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 236 8.1E-47 T 31-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Gene3D G3DSA:3.90.1310.10 64 246 1.9E-50 T 31-10-2018 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Gene3D G3DSA:3.30.1390.30 85 161 1.9E-50 T 31-10-2018 Y89_1021 9937c0ece1b69844aac6fbd8168be899 646 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 611 52.464 T 31-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_0493 9443d87a751eae16d094addd4c40f861 172 Pfam PF08281 Sigma-70, region 4 111 163 2.5E-15 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0493 9443d87a751eae16d094addd4c40f861 172 SUPERFAMILY SSF88946 8 77 3.26E-13 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0493 9443d87a751eae16d094addd4c40f861 172 Gene3D G3DSA:1.10.1740.10 1 77 6.9E-9 T 31-10-2018 Y89_0493 9443d87a751eae16d094addd4c40f861 172 Gene3D G3DSA:1.10.10.10 92 167 7.6E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0493 9443d87a751eae16d094addd4c40f861 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 163 5.0E-21 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_0493 9443d87a751eae16d094addd4c40f861 172 SUPERFAMILY SSF88659 89 167 1.38E-13 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0493 9443d87a751eae16d094addd4c40f861 172 Pfam PF04542 Sigma-70 region 2 15 79 2.6E-13 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_5597 49cc2b9dc6b9ce9de0826953c87e1030 832 Pfam PF14403 Circularly permuted ATP-grasp type 2 81 462 7.5E-156 T 31-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 Y89_5597 49cc2b9dc6b9ce9de0826953c87e1030 832 Gene3D G3DSA:3.40.50.11290 218 316 2.1E-40 T 31-10-2018 Y89_5597 49cc2b9dc6b9ce9de0826953c87e1030 832 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 511 819 1.6E-72 T 31-10-2018 IPR007296 Domain of unknown function DUF403 Y89_5597 49cc2b9dc6b9ce9de0826953c87e1030 832 SUPERFAMILY SSF56059 23 432 4.94E-24 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Pfam PF13533 Biotin-lipoyl like 89 136 4.4E-15 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Pfam PF13437 HlyD family secretion protein 200 302 6.2E-9 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 392 4.2E-81 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Gene3D G3DSA:2.40.420.20 322 390 9.3E-97 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Gene3D G3DSA:2.40.30.170 77 321 9.3E-97 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Gene3D G3DSA:1.10.287.470 123 196 9.3E-97 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 Gene3D G3DSA:2.40.50.100 88 232 9.3E-97 T 31-10-2018 Y89_2663 c9c2e235f387111fbd95abc4bdc43400 426 SUPERFAMILY SSF111369 78 315 1.57E-60 T 31-10-2018 Y89_4351 eb7516fd430917af8dd34d6d2b2e97d5 83 SUPERFAMILY SSF64307 6 82 1.07E-22 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_4351 eb7516fd430917af8dd34d6d2b2e97d5 83 Pfam PF01206 Sulfurtransferase TusA 14 82 1.1E-21 T 31-10-2018 IPR001455 TusA-like domain Y89_4351 eb7516fd430917af8dd34d6d2b2e97d5 83 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 15 39 - T 31-10-2018 IPR001455 TusA-like domain Y89_4351 eb7516fd430917af8dd34d6d2b2e97d5 83 Gene3D G3DSA:3.30.110.40 5 83 5.2E-26 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00175 Oxidoreductase NAD-binding domain 214 317 8.1E-21 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:2.40.30.10 100 201 1.4E-24 T 31-10-2018 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF52343 204 336 6.42E-37 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 1.8E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 213 232 1.8E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 154 161 1.8E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 238 247 1.8E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:3.10.20.30 1 99 2.1E-22 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 1.0E-15 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF54292 3 88 1.84E-22 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 198 207 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 247 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 232 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 154 161 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 137 149 3.8E-26 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Gene3D G3DSA:3.40.50.80 202 335 1.1E-32 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 Pfam PF00970 Oxidoreductase FAD-binding domain 111 204 1.3E-21 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_2678 b2103f21f351e1d10df93ccaa744580b 340 SUPERFAMILY SSF63380 107 204 6.09E-24 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 324 4.0E-27 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 171 8.0E-55 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 SUPERFAMILY SSF52518 361 528 1.2E-44 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Gene3D G3DSA:3.40.50.970 357 532 1.1E-43 T 31-10-2018 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Gene3D G3DSA:3.40.50.1220 186 351 6.9E-39 T 31-10-2018 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Gene3D G3DSA:3.40.50.970 1 185 6.1E-62 T 31-10-2018 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 525 1.3E-33 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_3932 6247789a0facc870ee9ec41078af32b3 533 SUPERFAMILY SSF52467 156 348 1.16E-37 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_3932 6247789a0facc870ee9ec41078af32b3 533 SUPERFAMILY SSF52518 2 180 2.51E-53 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_4593 35151979f806c6d400135eb20db8afe9 151 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 141 3.8E-32 T 31-10-2018 Y89_4593 35151979f806c6d400135eb20db8afe9 151 PIRSF PIRSF004923 1 150 8.7E-43 T 31-10-2018 IPR026268 Protein RseC Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 17 466 9.8E-170 T 31-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 472 43.896 T 31-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF53244 319 468 8.79E-47 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.40.1190.10 104 317 5.1E-82 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF01225 Mur ligase family, catalytic domain 17 115 3.8E-27 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF53623 101 318 1.27E-74 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.90.190.20 318 472 7.7E-47 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 410 8.7E-21 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Gene3D G3DSA:3.40.50.720 16 102 1.0E-31 T 31-10-2018 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 SUPERFAMILY SSF51984 16 102 4.05E-29 T 31-10-2018 Y89_4900 72cd9eeddaa81b9875c63e82b7bdbd70 480 Pfam PF08245 Mur ligase middle domain 120 299 9.7E-28 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_4519 5a291972e96932c17ca993ac99ff0d7a 319 SUPERFAMILY SSF82549 1 312 3.4E-47 T 31-10-2018 Y89_4519 5a291972e96932c17ca993ac99ff0d7a 319 Gene3D G3DSA:3.30.1180.10 172 314 6.8E-7 T 31-10-2018 Y89_4519 5a291972e96932c17ca993ac99ff0d7a 319 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 313 2.1E-77 T 31-10-2018 IPR003797 DegV Y89_4519 5a291972e96932c17ca993ac99ff0d7a 319 Gene3D G3DSA:2.20.28.50 28 65 3.0E-15 T 31-10-2018 Y89_4519 5a291972e96932c17ca993ac99ff0d7a 319 Gene3D G3DSA:3.40.50.10440 5 151 3.0E-15 T 31-10-2018 Y89_0175 2df46d30731e7cb054444495e41b171d 263 SMART SM00342 178 260 9.7E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0175 2df46d30731e7cb054444495e41b171d 263 SUPERFAMILY SSF51182 8 187 5.34E-18 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0175 2df46d30731e7cb054444495e41b171d 263 Gene3D G3DSA:1.10.10.60 163 263 1.3E-19 T 31-10-2018 Y89_0175 2df46d30731e7cb054444495e41b171d 263 Pfam PF12833 Helix-turn-helix domain 184 261 8.6E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0175 2df46d30731e7cb054444495e41b171d 263 Gene3D G3DSA:2.60.120.10 16 95 1.1E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0175 2df46d30731e7cb054444495e41b171d 263 Pfam PF02311 AraC-like ligand binding domain 35 128 3.4E-7 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_0175 2df46d30731e7cb054444495e41b171d 263 SUPERFAMILY SSF46689 215 261 2.42E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1989 feb42ab480d2d4aab72630dbf6a52646 198 SUPERFAMILY SSF53448 8 189 2.72E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1989 feb42ab480d2d4aab72630dbf6a52646 198 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 9 191 1.8E-58 T 31-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Y89_1989 feb42ab480d2d4aab72630dbf6a52646 198 Gene3D G3DSA:3.90.550.10 7 197 3.6E-48 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1989 feb42ab480d2d4aab72630dbf6a52646 198 Pfam PF12804 MobA-like NTP transferase domain 12 165 1.7E-30 T 31-10-2018 IPR025877 MobA-like NTP transferase Y89_1989 feb42ab480d2d4aab72630dbf6a52646 198 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 7 194 25.395 T 31-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SMART SM00387 365 474 2.7E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SMART SM00388 255 320 3.4E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:3.30.565.10 318 473 1.7E-25 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SMART SM00304 204 255 3.5E-5 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 2.2E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:1.20.1480.50 167 259 2.3E-5 T 31-10-2018 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 465 1.7E-10 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:1.10.287.130 260 317 1.0E-11 T 31-10-2018 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF55874 310 473 9.95E-29 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF103190 79 179 2.86E-12 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Gene3D G3DSA:3.30.450.20 48 166 1.1E-6 T 31-10-2018 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 SUPERFAMILY SSF47384 241 319 2.75E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0485 8b9621bc8b058c536caffe65fc674321 474 Pfam PF00672 HAMP domain 205 251 2.0E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 SUPERFAMILY SSF55874 266 417 2.23E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 SMART SM00388 207 273 1.6E-5 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 269 5.7E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 SUPERFAMILY SSF47384 205 271 5.69E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 SMART SM00387 315 419 5.4E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 417 1.6E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 Gene3D G3DSA:3.30.565.10 271 416 6.6E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 Gene3D G3DSA:1.10.287.130 212 270 6.6E-33 T 31-10-2018 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 1.3E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 1.3E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 1.3E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4984 da4ffc84eaa02c19c608add6b5b30eb6 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 1.3E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 580 5.7E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 5.7E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 5.7E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SUPERFAMILY SSF52172 807 929 2.85E-35 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF00072 Response regulator receiver domain 810 924 4.1E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF00072 Response regulator receiver domain 661 776 6.2E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 479 1.1E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SUPERFAMILY SSF47384 409 480 1.18E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Gene3D G3DSA:3.40.50.2300 806 928 4.3E-37 T 31-10-2018 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF07695 7TM diverse intracellular signalling 189 388 1.4E-22 T 31-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SMART SM00387 526 641 2.3E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Gene3D G3DSA:1.10.287.130 383 477 2.8E-24 T 31-10-2018 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 640 2.6E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Pfam PF07696 7TMR-DISM extracellular 2 49 170 2.4E-21 T 31-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Gene3D G3DSA:3.30.565.10 478 643 2.1E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SMART SM00448 808 924 9.9E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SMART SM00448 658 777 6.2E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Gene3D G3DSA:2.60.40.2380 41 185 6.7E-63 T 31-10-2018 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SMART SM00388 414 479 1.9E-23 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SUPERFAMILY SSF52172 656 782 4.27E-27 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 SUPERFAMILY SSF55874 468 640 8.51E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5525 f414d7faf3da7edd6cd7fb304d980bd7 942 Gene3D G3DSA:3.40.50.12740 657 805 4.1E-28 T 31-10-2018 Y89_2359 4b7918d935e4f255b9ad85d31116ede7 212 SUPERFAMILY SSF102114 26 113 7.65E-6 T 31-10-2018 Y89_2359 4b7918d935e4f255b9ad85d31116ede7 212 Gene3D G3DSA:3.20.20.70 9 154 2.7E-22 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2359 4b7918d935e4f255b9ad85d31116ede7 212 Pfam PF13353 4Fe-4S single cluster domain 16 144 8.8E-23 T 31-10-2018 Y89_0403 8ce9195bac449c10ce8b77f07b47470e 265 Hamap MF_00443 Thiazole synthase [thiG]. 10 265 42.991 T 31-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Y89_0403 8ce9195bac449c10ce8b77f07b47470e 265 Pfam PF05690 Thiazole biosynthesis protein ThiG 13 259 2.0E-113 T 31-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Y89_0403 8ce9195bac449c10ce8b77f07b47470e 265 Gene3D G3DSA:3.20.20.70 1 265 2.9E-126 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0403 8ce9195bac449c10ce8b77f07b47470e 265 SUPERFAMILY SSF110399 10 251 6.28E-92 T 31-10-2018 Y89_3470 3b183b46d3d21143323fddbcf86cccf3 307 Pfam PF05661 Protein of unknown function (DUF808) 4 291 3.1E-118 T 31-10-2018 IPR008526 Inner membrane protein YedI Y89_3470 3b183b46d3d21143323fddbcf86cccf3 307 PIRSF PIRSF016660 1 305 1.9E-123 T 31-10-2018 IPR008526 Inner membrane protein YedI Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 SUPERFAMILY SSF50677 201 401 5.76E-54 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 1.8E-7 T 31-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Gene3D G3DSA:1.10.730.20 646 935 2.6E-89 T 31-10-2018 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Pfam PF08264 Anticodon-binding domain of tRNA 691 847 1.1E-27 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 SUPERFAMILY SSF52374 3 652 1.83E-132 T 31-10-2018 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 849 9.8E-277 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 SUPERFAMILY SSF47323 658 934 2.43E-77 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 399 414 3.1E-32 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 3.1E-32 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 3.1E-32 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 235 258 3.1E-32 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 529 542 3.1E-32 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Gene3D G3DSA:3.40.50.620 25 635 6.7E-226 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 934 21.212 T 31-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 646 4.2E-197 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_5167 8d81d3f8c879809efb8520b48d464f7e 943 Gene3D G3DSA:3.90.740.10 192 406 6.7E-226 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_5915 b3fb2f6abd8af8ef6bc2d697b82ce646 203 PIRSF PIRSF006806 7 196 4.2E-32 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y89_5915 b3fb2f6abd8af8ef6bc2d697b82ce646 203 SUPERFAMILY SSF100950 8 200 8.65E-52 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_5915 b3fb2f6abd8af8ef6bc2d697b82ce646 203 Gene3D G3DSA:3.40.50.10420 4 202 1.2E-50 T 31-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Y89_5915 b3fb2f6abd8af8ef6bc2d697b82ce646 203 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 193 3.6E-38 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y89_5915 b3fb2f6abd8af8ef6bc2d697b82ce646 203 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 193 9.0E-44 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Y89_4476 12c2775a5c532d6b7059b3aaa78a1daf 275 PIRSF PIRSF015582 1 275 1.4E-73 T 31-10-2018 IPR011206 Citrate lyase beta subunit-like Y89_4476 12c2775a5c532d6b7059b3aaa78a1daf 275 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 215 4.0E-29 T 31-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Y89_4476 12c2775a5c532d6b7059b3aaa78a1daf 275 SUPERFAMILY SSF51621 4 227 1.36E-58 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_4476 12c2775a5c532d6b7059b3aaa78a1daf 275 Gene3D G3DSA:3.20.20.60 1 275 4.4E-80 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.3E-88 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82866 294 493 6.41E-48 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.70.1440 655 852 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82714 708 791 4.58E-16 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.70.1430 560 654 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82693 558 649 4.97E-12 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.70.1320 135 328 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:1.20.1640.10 10 505 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.70.1430 40 802 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 Pfam PF00873 AcrB/AcrD/AcrF family 6 1013 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82866 794 1019 1.15E-43 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82693 40 134 2.96E-22 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82714 183 268 1.44E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.2090.10 706 794 9.0E-295 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:3.30.2090.10 179 271 9.0E-295 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_2665 64c26193910007de07c11f8703941a9e 1036 Gene3D G3DSA:1.20.1640.10 506 1010 9.0E-295 T 31-10-2018 Y89_2665 64c26193910007de07c11f8703941a9e 1036 SUPERFAMILY SSF82693 135 326 5.23E-19 T 31-10-2018 Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 152 1.7E-33 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 Gene3D G3DSA:3.40.980.10 2 173 3.2E-49 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 170 4.1E-86 T 31-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 Pfam PF00994 Probable molybdopterin binding domain 15 157 4.7E-34 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 SMART SM00852 15 159 6.2E-33 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 PIRSF PIRSF006443 1 167 5.2E-66 T 31-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 SUPERFAMILY SSF53218 8 169 2.09E-47 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1990 094fb52c4eaa843f04ada84da052f0d6 179 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 73 86 - T 31-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Y89_0108 1fa4aff2f1cd37be937240057de52e2c 370 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 20 318 1.2E-93 T 31-10-2018 IPR018683 Domain of unknown function DUF2169 Y89_2470 c16c7d0e25d3f741bda098fa74ec81e7 235 PIRSF PIRSF037208 1 235 5.7E-94 T 31-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Y89_2470 c16c7d0e25d3f741bda098fa74ec81e7 235 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 5 232 41.967 T 31-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Y89_2470 c16c7d0e25d3f741bda098fa74ec81e7 235 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 15 85 2.2E-18 T 31-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Y89_2470 c16c7d0e25d3f741bda098fa74ec81e7 235 SUPERFAMILY SSF55729 78 233 1.56E-25 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2470 c16c7d0e25d3f741bda098fa74ec81e7 235 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 105 226 2.0E-40 T 31-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Y89_3184 cdfe5a6c22554824c88adccc45d8e92a 359 Pfam PF00296 Luciferase-like monooxygenase 37 330 7.4E-50 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_3184 cdfe5a6c22554824c88adccc45d8e92a 359 SUPERFAMILY SSF51679 30 352 1.3E-57 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_3184 cdfe5a6c22554824c88adccc45d8e92a 359 Gene3D G3DSA:3.20.20.30 17 359 3.4E-71 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_1590 e7edc1714465531caff5aa11f3a7f7e3 365 Pfam PF00676 Dehydrogenase E1 component 38 323 1.1E-80 T 31-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Y89_1590 e7edc1714465531caff5aa11f3a7f7e3 365 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 10 350 2.6E-141 T 31-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Y89_1590 e7edc1714465531caff5aa11f3a7f7e3 365 Gene3D G3DSA:3.40.50.970 2 357 3.4E-108 T 31-10-2018 Y89_1590 e7edc1714465531caff5aa11f3a7f7e3 365 SUPERFAMILY SSF52518 30 352 2.36E-96 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_1177 309adfeec38d98bf02d8eb061c9ce23c 156 SUPERFAMILY SSF55961 1 152 2.27E-8 T 31-10-2018 Y89_1177 309adfeec38d98bf02d8eb061c9ce23c 156 Gene3D G3DSA:3.30.530.20 3 156 3.3E-5 T 31-10-2018 IPR023393 START-like domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00091 292 358 0.025 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00091 853 920 6.1E-8 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00091 717 784 0.83 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00091 584 653 1.7E-5 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55785 283 381 3.77E-8 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55785 842 965 4.89E-22 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF08447 PAS fold 608 699 4.0E-14 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.30.70.270 977 1156 3.5E-65 T 31-10-2018 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF13426 PAS domain 865 966 8.6E-17 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF13426 PAS domain 729 844 2.2E-7 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF13188 PAS domain 305 349 0.015 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.30.450.20 856 976 1.7E-31 T 31-10-2018 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 975 1141 4.3E-41 T 31-10-2018 IPR000160 GGDEF domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.20.20.450 1157 1409 2.1E-115 T 31-10-2018 IPR035919 EAL domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00086 803 845 7.4E-4 T 31-10-2018 IPR001610 PAC motif Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00086 925 967 1.2E-5 T 31-10-2018 IPR001610 PAC motif Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00086 662 705 0.0065 T 31-10-2018 IPR001610 PAC motif Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55785 569 703 1.13E-16 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00267 967 1143 2.1E-71 T 31-10-2018 IPR000160 GGDEF domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SMART SM00052 1153 1399 4.5E-126 T 31-10-2018 IPR001633 EAL domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.30.450.20 715 855 1.6E-20 T 31-10-2018 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55785 480 579 1.47E-5 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.30.450.20 577 703 7.1E-19 T 31-10-2018 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF141868 1158 1405 5.1E-92 T 31-10-2018 IPR035919 EAL domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF00563 EAL domain 1159 1394 2.3E-76 T 31-10-2018 IPR001633 EAL domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55785 707 843 1.82E-14 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Gene3D G3DSA:3.30.450.20 281 417 9.7E-9 T 31-10-2018 Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 Pfam PF00990 Diguanylate cyclase, GGDEF domain 978 1139 1.4E-51 T 31-10-2018 IPR000160 GGDEF domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 581 712 5.7E-11 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 713 852 3.5E-11 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 857 973 1.5E-18 T 31-10-2018 IPR000014 PAS domain Y89_5209 3016da81d41bb2fd1d24d78859123c1f 1415 SUPERFAMILY SSF55073 983 1144 3.61E-50 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0678 4c16dca0eb8049a6071fbf4ac8108c9e 348 Gene3D G3DSA:3.40.190.10 32 326 2.9E-121 T 31-10-2018 Y89_0678 4c16dca0eb8049a6071fbf4ac8108c9e 348 Gene3D G3DSA:3.40.190.10 132 333 2.9E-121 T 31-10-2018 Y89_0678 4c16dca0eb8049a6071fbf4ac8108c9e 348 Pfam PF13416 Bacterial extracellular solute-binding protein 49 303 6.3E-46 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_0678 4c16dca0eb8049a6071fbf4ac8108c9e 348 SUPERFAMILY SSF53850 29 345 1.18E-67 T 31-10-2018 Y89_0987 50fb8953c1172cd6de83bf0cfdab9c40 308 SUPERFAMILY SSF52540 2 224 1.85E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0987 50fb8953c1172cd6de83bf0cfdab9c40 308 Pfam PF00005 ABC transporter 18 160 4.7E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0987 50fb8953c1172cd6de83bf0cfdab9c40 308 Gene3D G3DSA:3.40.50.300 1 233 6.6E-64 T 31-10-2018 Y89_0987 50fb8953c1172cd6de83bf0cfdab9c40 308 SMART SM00382 26 210 4.5E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4508 de2f42cb82a03ee7609d7901e2ec5c20 389 SUPERFAMILY SSF81296 26 210 1.01E-54 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_4508 de2f42cb82a03ee7609d7901e2ec5c20 389 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 26 207 2.2E-45 T 31-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal Y89_4508 de2f42cb82a03ee7609d7901e2ec5c20 389 Gene3D G3DSA:3.30.70.2150 215 320 1.7E-16 T 31-10-2018 Y89_4508 de2f42cb82a03ee7609d7901e2ec5c20 389 Gene3D G3DSA:2.70.50.50 26 212 3.0E-65 T 31-10-2018 Y89_3797 d70ebf5e0588d73323c1a7fc6c7eb809 122 Pfam PF00893 Small Multidrug Resistance protein 3 93 2.4E-23 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_3797 d70ebf5e0588d73323c1a7fc6c7eb809 122 SUPERFAMILY SSF103481 5 105 3.66E-16 T 31-10-2018 Y89_3797 d70ebf5e0588d73323c1a7fc6c7eb809 122 Gene3D G3DSA:1.10.3730.20 1 109 3.5E-30 T 31-10-2018 Y89_5320 340cec8852c1cec955f8eba1147551fb 297 Gene3D G3DSA:3.40.50.1980 26 147 1.4E-43 T 31-10-2018 Y89_5320 340cec8852c1cec955f8eba1147551fb 297 SUPERFAMILY SSF53807 27 286 9.03E-49 T 31-10-2018 Y89_5320 340cec8852c1cec955f8eba1147551fb 297 Pfam PF01497 Periplasmic binding protein 31 263 9.7E-31 T 31-10-2018 IPR002491 ABC transporter periplasmic binding domain Y89_5320 340cec8852c1cec955f8eba1147551fb 297 Gene3D G3DSA:3.40.50.1980 148 297 8.5E-58 T 31-10-2018 Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SMART SM00564 426 476 89.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SMART SM00564 723 756 0.0045 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SMART SM00564 222 253 2.3E-5 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SMART SM00564 300 332 120.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SMART SM00564 357 398 9.4 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 SUPERFAMILY SSF50998 164 801 5.89E-150 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y89_2964 24c8b5653771f21889b4dba79a480eab 803 Gene3D G3DSA:2.140.10.10 574 802 4.3E-39 T 31-10-2018 Y89_2964 24c8b5653771f21889b4dba79a480eab 803 Pfam PF13360 PQQ-like domain 236 477 2.6E-9 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y89_2964 24c8b5653771f21889b4dba79a480eab 803 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 15 801 0.0 T 31-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 Y89_2964 24c8b5653771f21889b4dba79a480eab 803 Gene3D G3DSA:2.140.10.10 161 573 5.5E-112 T 31-10-2018 Y89_2964 24c8b5653771f21889b4dba79a480eab 803 Pfam PF01011 PQQ enzyme repeat 732 766 8.1E-6 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y89_2931 464bc80d9764a0024cdc557d0f803191 541 Pfam PF00171 Aldehyde dehydrogenase family 64 505 3.8E-94 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_2931 464bc80d9764a0024cdc557d0f803191 541 SUPERFAMILY SSF53720 22 511 1.19E-105 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_2931 464bc80d9764a0024cdc557d0f803191 541 Gene3D G3DSA:3.40.605.10 68 501 6.0E-103 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_2931 464bc80d9764a0024cdc557d0f803191 541 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_2931 464bc80d9764a0024cdc557d0f803191 541 Gene3D G3DSA:3.40.309.10 289 480 6.0E-103 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 18 319 5.2E-91 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 92 101 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 149 166 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 54 76 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 235 244 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 300 314 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 276 281 3.4E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 Gene3D G3DSA:3.40.50.1370 150 306 1.0E-90 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 18 162 2.2E-41 T 31-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 170 316 1.0E-23 T 31-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 150 161 7.7E-18 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 272 281 7.7E-18 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 284 307 7.7E-18 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 64 83 7.7E-18 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 17 321 41.802 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 SUPERFAMILY SSF53671 17 321 3.8E-95 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 Gene3D G3DSA:3.40.50.1370 18 317 1.0E-90 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_0425 7b4501cd414851280dfb8d473ca15a82 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 64 71 - T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 Gene3D G3DSA:3.50.50.60 119 244 4.3E-125 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4511 4dc6222739b353c23b2746028c5abac5 316 Gene3D G3DSA:3.50.50.60 10 312 4.3E-125 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4511 4dc6222739b353c23b2746028c5abac5 316 SUPERFAMILY SSF51905 2 313 1.04E-55 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 5.5E-42 T 31-10-2018 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 5.5E-42 T 31-10-2018 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.5E-42 T 31-10-2018 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 5.5E-42 T 31-10-2018 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 5.5E-42 T 31-10-2018 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 31-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 42 57 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 63 73 1.1E-76 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 301 5.9E-53 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_4511 4dc6222739b353c23b2746028c5abac5 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 313 8.9E-120 T 31-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Y89_6023 d5a0a37e2ca756d73a14a0a282319736 181 SUPERFAMILY SSF53098 2 179 2.01E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_6023 d5a0a37e2ca756d73a14a0a282319736 181 Pfam PF00929 Exonuclease 7 168 3.3E-8 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_6023 d5a0a37e2ca756d73a14a0a282319736 181 SMART SM00479 5 180 4.0E-7 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_6023 d5a0a37e2ca756d73a14a0a282319736 181 Gene3D G3DSA:3.30.420.10 1 181 1.9E-29 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF52172 1 178 3.7E-44 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Pfam PF00072 Response regulator receiver domain 7 115 2.4E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:1.10.8.60 306 382 1.3E-23 T 31-10-2018 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 159 172 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 221 236 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 1.5E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 445 1.5E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF52540 135 377 1.15E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5154 575787dbdd90a9d620cab95cac969cce 445 SMART SM00382 155 298 8.5E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5154 575787dbdd90a9d620cab95cac969cce 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:1.10.10.60 384 445 1.6E-16 T 31-10-2018 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:3.40.50.2300 4 122 2.0E-34 T 31-10-2018 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Pfam PF00158 Sigma-54 interaction domain 135 301 5.2E-67 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 SMART SM00448 4 115 7.0E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 SUPERFAMILY SSF46689 349 445 3.99E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Gene3D G3DSA:3.40.50.300 123 305 2.5E-59 T 31-10-2018 Y89_5154 575787dbdd90a9d620cab95cac969cce 445 Pfam PF02954 Bacterial regulatory protein, Fis family 402 442 2.3E-16 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_1737 0ec8373baf9bb690b26aef2fb6b9b234 109 SUPERFAMILY SSF103481 6 106 1.16E-7 T 31-10-2018 Y89_1737 0ec8373baf9bb690b26aef2fb6b9b234 109 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 1 106 22.672 T 31-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Y89_1737 0ec8373baf9bb690b26aef2fb6b9b234 109 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 3 106 1.4E-27 T 31-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Y89_2540 e95ead7aaa0ba91c6ff2c46952b30011 244 Gene3D G3DSA:3.40.50.1820 2 244 5.4E-40 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2540 e95ead7aaa0ba91c6ff2c46952b30011 244 Pfam PF12697 Alpha/beta hydrolase family 4 238 2.3E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2540 e95ead7aaa0ba91c6ff2c46952b30011 244 SUPERFAMILY SSF53474 4 241 1.72E-31 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4225 4ca6a2408afed463e992c383797b74cc 329 SUPERFAMILY SSF51430 6 317 6.68E-95 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_4225 4ca6a2408afed463e992c383797b74cc 329 PRINTS PR00069 Aldo-keto reductase signature 45 69 7.4E-11 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4225 4ca6a2408afed463e992c383797b74cc 329 PRINTS PR00069 Aldo-keto reductase signature 109 127 7.4E-11 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4225 4ca6a2408afed463e992c383797b74cc 329 PRINTS PR00069 Aldo-keto reductase signature 140 157 7.4E-11 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4225 4ca6a2408afed463e992c383797b74cc 329 Pfam PF00248 Aldo/keto reductase family 17 309 2.1E-74 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_4225 4ca6a2408afed463e992c383797b74cc 329 Gene3D G3DSA:3.20.20.100 1 328 1.1E-124 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 Gene3D G3DSA:2.170.130.10 48 173 1.2E-31 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 Pfam PF00593 TonB dependent receptor 240 718 1.8E-54 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 164 9.4E-22 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 Gene3D G3DSA:2.40.170.20 177 721 1.4E-119 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 721 5.1E-97 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 704 721 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_1744 ec522974a762f56aa1949423b2c2bbe0 721 SUPERFAMILY SSF56935 36 721 4.03E-118 T 31-10-2018 Y89_1656 b22f8b270b8abf054fc28ab1f1f72313 249 Pfam PF07238 PilZ domain 124 235 1.4E-8 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_1656 b22f8b270b8abf054fc28ab1f1f72313 249 Gene3D G3DSA:2.40.10.220 125 239 1.1E-28 T 31-10-2018 Y89_1656 b22f8b270b8abf054fc28ab1f1f72313 249 Pfam PF07317 Flagellar regulator YcgR 17 121 6.3E-26 T 31-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal Y89_1656 b22f8b270b8abf054fc28ab1f1f72313 249 Gene3D G3DSA:2.30.110.10 11 124 1.4E-44 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 31-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 Gene3D G3DSA:2.40.100.10 1 163 2.1E-66 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 161 5.3E-46 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 SUPERFAMILY SSF50891 2 162 4.53E-57 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 5.4E-13 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 5.4E-13 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 5.4E-13 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Y89_3539 704a816bda8e44edabe4ef298654f1e3 165 PIRSF PIRSF001467 1 165 2.9E-26 T 31-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Y89_3044 cc44cd8b36b23acf8eb1d399c714e52f 291 SUPERFAMILY SSF53474 8 276 9.67E-53 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3044 cc44cd8b36b23acf8eb1d399c714e52f 291 Gene3D G3DSA:3.40.50.1820 10 287 9.9E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3044 cc44cd8b36b23acf8eb1d399c714e52f 291 Pfam PF00561 alpha/beta hydrolase fold 26 273 1.7E-20 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4606 08e9e667d1a94e1de8e66971c375192a 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 12 147 1.2E-17 T 31-10-2018 IPR009936 Protein of unknown function DUF1468 Y89_4157 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:1.10.8.60 316 380 9.5E-18 T 31-10-2018 Y89_4157 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:3.30.450.20 22 129 2.6E-7 T 31-10-2018 Y89_4157 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_4157 4213d91d48273195b73cd09165979418 466 SMART SM00382 166 308 1.8E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4157 4213d91d48273195b73cd09165979418 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 439 459 4.9E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4157 4213d91d48273195b73cd09165979418 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 439 4.9E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4157 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_4157 4213d91d48273195b73cd09165979418 466 Pfam PF00158 Sigma-54 interaction domain 150 309 2.8E-59 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_4157 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF52540 155 384 3.75E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4157 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF55785 22 124 3.14E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4157 4213d91d48273195b73cd09165979418 466 Pfam PF08448 PAS fold 27 135 3.9E-16 T 31-10-2018 IPR013656 PAS fold-4 Y89_4157 4213d91d48273195b73cd09165979418 466 SUPERFAMILY SSF46689 385 458 7.89E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4157 4213d91d48273195b73cd09165979418 466 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_4157 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:3.40.50.300 139 315 2.1E-56 T 31-10-2018 Y89_4157 4213d91d48273195b73cd09165979418 466 Gene3D G3DSA:1.10.10.60 399 460 1.3E-12 T 31-10-2018 Y89_4157 4213d91d48273195b73cd09165979418 466 Pfam PF02954 Bacterial regulatory protein, Fis family 416 456 9.1E-10 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 SUPERFAMILY SSF47729 1 90 2.94E-31 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 SMART SM00411 1 90 9.4E-43 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.7E-32 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y89_3525 e5a40123298533bd77ac5fd6af139ed8 90 Gene3D G3DSA:4.10.520.10 1 90 3.5E-35 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 SMART SM01230 120 376 1.2E-93 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 Gene3D G3DSA:3.30.590.10 123 458 1.2E-101 T 31-10-2018 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 SUPERFAMILY SSF55931 122 456 1.18E-99 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 Pfam PF00120 Glutamine synthetase, catalytic domain 121 454 4.5E-107 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 Gene3D G3DSA:3.10.20.70 15 122 5.4E-8 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 SUPERFAMILY SSF54368 17 119 3.14E-17 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_3283 3deefc223ecd179d97ce46f003f9ed8d 458 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 257 272 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 Gene3D G3DSA:3.40.190.10 103 289 4.6E-40 T 31-10-2018 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 SUPERFAMILY SSF53850 86 294 1.07E-25 T 31-10-2018 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 Gene3D G3DSA:1.10.10.10 7 94 2.3E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 Pfam PF03466 LysR substrate binding domain 95 293 2.1E-21 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 SUPERFAMILY SSF46785 4 87 2.72E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 Gene3D G3DSA:3.40.190.10 164 263 4.6E-40 T 31-10-2018 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.5E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0044 6846fd8532f8d3f26b5121ee5ac0bac8 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 SUPERFAMILY SSF54001 3 263 7.85E-75 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_5496 013664ac75830dbd914e9b1d30742c06 279 Pfam PF00797 N-acetyltransferase 26 261 2.2E-71 T 31-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 Gene3D G3DSA:3.30.2140.10 11 259 4.5E-96 T 31-10-2018 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 73 95 3.7E-12 T 31-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 25 48 3.7E-12 T 31-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 107 132 3.7E-12 T 31-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 PRINTS PR01543 Arylamine N-acetyltransferase signature 49 72 3.7E-12 T 31-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 Y89_5496 013664ac75830dbd914e9b1d30742c06 279 Gene3D G3DSA:2.40.128.150 89 187 4.5E-96 T 31-10-2018 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 Pfam PF00119 ATP synthase A chain 51 282 1.3E-55 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 ProSitePatterns PS00449 ATP synthase a subunit signature. 217 226 - T 31-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 Gene3D G3DSA:1.20.120.220 98 288 2.2E-52 T 31-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 41 283 4.4E-41 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 SUPERFAMILY SSF81336 99 282 3.14E-39 T 31-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6300 340ddc6022528465f23c151efcf27e2c 289 Hamap MF_01393 ATP synthase subunit a [atpB]. 10 288 15.57 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_3177 e9a2d829c93a362fec94262f0683e518 491 Gene3D G3DSA:3.50.50.60 157 229 1.5E-12 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3177 e9a2d829c93a362fec94262f0683e518 491 Gene3D G3DSA:3.50.50.60 3 156 3.0E-58 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3177 e9a2d829c93a362fec94262f0683e518 491 SUPERFAMILY SSF51905 283 487 1.62E-24 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3177 e9a2d829c93a362fec94262f0683e518 491 Gene3D G3DSA:3.50.50.60 307 489 2.0E-41 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3177 e9a2d829c93a362fec94262f0683e518 491 SUPERFAMILY SSF51905 10 255 1.3E-59 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3177 e9a2d829c93a362fec94262f0683e518 491 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 14 208 8.7E-19 T 31-10-2018 Y89_4671 bbc02abe43160815194144c9e30b5a54 472 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 2 462 3.9E-189 T 31-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Gene3D G3DSA:3.10.20.30 1 89 8.0E-28 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Gene3D G3DSA:3.30.465.10 250 363 4.2E-33 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Gene3D G3DSA:3.30.43.10 200 249 9.5E-17 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 2 470 3.3E-211 T 31-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Gene3D G3DSA:1.10.150.120 90 196 7.8E-33 T 31-10-2018 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Gene3D G3DSA:3.30.390.50 370 472 4.2E-28 T 31-10-2018 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 PIRSF PIRSF036557 1 484 1.2E-227 T 31-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 76 6.0E-6 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 SUPERFAMILY SSF47741 97 201 1.57E-33 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 SUPERFAMILY SSF55447 368 473 1.07E-32 T 31-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 370 470 2.2E-30 T 31-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 199 362 1.6E-50 T 31-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 SMART SM01092 370 471 3.7E-33 T 31-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 SUPERFAMILY SSF56176 184 361 3.03E-53 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 SUPERFAMILY SSF54292 3 90 1.97E-18 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3814 d1b33d290e4ae3ff9affbe10468dd9fb 484 Pfam PF01799 [2Fe-2S] binding domain 86 158 8.5E-30 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Gene3D G3DSA:3.90.930.1 48 197 2.6E-11 T 31-10-2018 Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Gene3D G3DSA:3.90.930.1 222 403 8.7E-10 T 31-10-2018 Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 704 762 4.0E-14 T 31-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Gene3D G3DSA:2.180.10.10 516 807 1.0E-33 T 31-10-2018 Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 232 269 1.5E-8 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 190 223 2.6E-5 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 366 408 1.5E-5 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 295 328 1.6E-8 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 253 289 7.8E-11 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 58 96 1.3E-7 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 Pfam PF05593 RHS Repeat 105 137 9.5E-5 T 31-10-2018 IPR031325 RHS repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 584 622 8.2E-6 T 31-10-2018 IPR006530 YD repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 295 330 1.0E-8 T 31-10-2018 IPR006530 YD repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 211 251 5.0E-7 T 31-10-2018 IPR006530 YD repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 58 97 7.7E-7 T 31-10-2018 IPR006530 YD repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 109 137 0.0013 T 31-10-2018 IPR006530 YD repeat Y89_2741 20c48ad0ada241ade38d71fadc1e6e79 889 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 253 294 1.1E-11 T 31-10-2018 IPR006530 YD repeat Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 Pfam PF00710 Asparaginase, N-terminal 36 227 4.5E-54 T 31-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 Gene3D G3DSA:3.40.50.1170 34 247 7.0E-83 T 31-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 117 135 2.3E-21 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 295 313 2.3E-21 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 PRINTS PR00139 Asparaginase/glutaminase family signature 37 48 2.3E-21 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 118 128 - T 31-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 PIRSF PIRSF500176 33 362 1.7E-77 T 31-10-2018 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 PIRSF PIRSF001220 31 362 9.3E-86 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 Gene3D G3DSA:3.40.50.40 248 362 1.7E-34 T 31-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 39 47 - T 31-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 25 362 4.4E-114 T 31-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 SUPERFAMILY SSF53774 34 361 5.1E-96 T 31-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Y89_4013 a8c28a9db547d78d0f1d5e8b47cbd356 362 SMART SM00870 36 356 5.7E-126 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 9 352 2.1E-141 T 31-10-2018 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 Gene3D G3DSA:1.10.40.30 366 453 2.0E-33 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 Pfam PF10397 Adenylosuccinate lyase C-terminus 368 445 8.8E-20 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 Gene3D G3DSA:1.20.200.10 109 364 2.2E-104 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 Pfam PF00206 Lyase 15 304 2.0E-67 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 SMART SM00998 367 446 5.4E-29 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 Gene3D G3DSA:1.10.275.10 6 108 1.4E-36 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 SUPERFAMILY SSF48557 9 449 1.15E-125 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00145 Argininosuccinate lyase family signature 234 258 3.7E-12 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00145 Argininosuccinate lyase family signature 144 164 3.7E-12 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00145 Argininosuccinate lyase family signature 103 125 3.7E-12 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 3.7E-12 T 31-10-2018 Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00149 Fumarate lyase superfamily signature 104 122 8.8E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00149 Fumarate lyase superfamily signature 149 167 8.8E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00149 Fumarate lyase superfamily signature 234 261 8.8E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 8.8E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_0237 ca72207cb379c4c5fb6b22ba43a5c2f2 459 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 261 275 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 TIGRFAM TIGR01810 betA: choline dehydrogenase 6 539 2.8E-281 T 31-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Pfam PF05199 GMC oxidoreductase 395 529 6.3E-42 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 84 107 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 SUPERFAMILY SSF51905 1 537 1.23E-88 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Gene3D G3DSA:3.30.410.40 154 476 2.5E-176 T 31-10-2018 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 3 556 64.937 T 31-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Gene3D G3DSA:1.10.1220.110 99 153 2.5E-176 T 31-10-2018 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Pfam PF00732 GMC oxidoreductase 5 302 1.1E-95 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 SUPERFAMILY SSF54373 297 479 3.24E-64 T 31-10-2018 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Gene3D G3DSA:3.50.50.60 4 533 2.5E-176 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 PIRSF PIRSF000137 1 540 6.2E-136 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_6110 b9e94aa14de7fe593c4fb92d96d502c6 561 Gene3D G3DSA:4.10.450.10 38 201 2.5E-176 T 31-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Y89_6130 66f65526e605639ca22f8ae7fd9ef315 140 Gene3D G3DSA:3.30.1330.40 8 139 3.2E-34 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_6130 66f65526e605639ca22f8ae7fd9ef315 140 Pfam PF01042 Endoribonuclease L-PSP 26 133 6.6E-22 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_6130 66f65526e605639ca22f8ae7fd9ef315 140 SUPERFAMILY SSF55298 24 137 2.83E-32 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_0347 4526b665c020688ac5a3992257a71f86 309 Gene3D G3DSA:2.120.10.30 45 299 3.5E-8 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_0347 4526b665c020688ac5a3992257a71f86 309 Pfam PF06977 SdiA-regulated 51 302 2.8E-106 T 31-10-2018 IPR009722 SdiA-regulated Y89_0347 4526b665c020688ac5a3992257a71f86 309 SUPERFAMILY SSF50956 14 304 6.41E-57 T 31-10-2018 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Pfam PF12840 Helix-turn-helix domain 19 75 1.5E-11 T 31-10-2018 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SUPERFAMILY SSF46785 10 206 2.69E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SMART SM00418 18 95 6.7E-12 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Gene3D G3DSA:1.10.10.10 4 115 4.3E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Gene3D G3DSA:3.40.50.150 149 323 1.4E-34 T 31-10-2018 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 SUPERFAMILY SSF53335 157 313 1.67E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 Pfam PF13489 Methyltransferase domain 154 294 1.1E-17 T 31-10-2018 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 9.6E-10 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 9.6E-10 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0569 e2fafa5497ccd5cffcf92a5ac7c29c7e 333 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 9.6E-10 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05860 haemagglutination activity domain 33 166 1.5E-33 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Gene3D G3DSA:2.160.20.10 35 327 2.9E-99 T 31-10-2018 IPR012334 Pectin lyase fold Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF04829 Pre-toxin domain with VENN motif 3599 3648 1.9E-13 T 31-10-2018 IPR006914 VENN motif-containing domain Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF13332 Haemagluttinin repeat 2626 2689 7.3E-6 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF13332 Haemagluttinin repeat 3079 3254 4.7E-43 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF13332 Haemagluttinin repeat 2693 2763 1.0E-5 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF13332 Haemagluttinin repeat 2846 3001 4.9E-8 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1219 1252 3.9E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 505 540 2.6E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 812 852 1.7E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1530 1571 8.9E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 379 418 4.4E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 585 625 1.2E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1382 1421 2.7E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2492 2531 7.3E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1190 1220 0.0016 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1003 1042 1.4E-9 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2044 2083 0.0077 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1149 1185 2.7E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1254 1294 0.0017 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 419 460 5.5E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1905 1942 1.8E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 958 1001 0.025 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1581 1613 0.54 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 853 892 1.3E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1340 1380 1.5E-8 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1465 1505 9.7E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1296 1337 0.025 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1413 1443 0.063 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 895 935 2.0E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1045 1084 0.0072 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 937 969 1.7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2511 2547 0.047 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1108 1148 4.4E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1066 1106 0.092 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 606 644 3.4E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1486 1529 0.032 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 311 350 0.015 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1088 1126 0.0032 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 729 769 8.8E-8 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1867 1903 7.4E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1423 1464 0.48 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 542 582 2.5E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 688 727 3.7E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1447 1484 1.2E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1662 1700 5.3E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 770 809 5.2E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2580 2611 0.6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1516 1550 1.8E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 462 501 0.021 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 163 1.3E-17 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 823 874 2.1E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 471 540 0.017 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 216 292 8.0E-8 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1828 1895 2.3 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1133 1201 6.9E-7 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 296 371 50.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1041 1099 1.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 2485 2531 28.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1910 1982 0.57 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1362 1432 4.2E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 2158 2185 63.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1557 1618 130.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 406 460 2.3E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 715 769 0.002 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1670 1736 2.3 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 2041 2095 100.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 2575 2614 29.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 589 679 2.0E-4 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1278 1338 3.1E-4 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 Pfam PF05594 Haemagluttinin repeat 1476 1550 0.027 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 SMART SM00912 47 168 4.7E-46 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_0048 a3a6f5bb4ed90edc3133029632d98a15 3864 SUPERFAMILY SSF51126 45 318 2.23E-45 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 108 114 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 105 117 4.3E-8 T 31-10-2018 Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 134 158 4.3E-8 T 31-10-2018 Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 45 59 4.3E-8 T 31-10-2018 Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 SUPERFAMILY SSF53335 18 204 5.02E-22 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4654 da9f57bcd6792d0413d575c115c6c7b2 373 Gene3D G3DSA:3.40.50.150 20 210 4.4E-17 T 31-10-2018 Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 PIRSF PIRSF001227 1 794 2.1E-171 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 Pfam PF01804 Penicillin amidase 42 782 5.0E-202 T 31-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 SUPERFAMILY SSF56235 39 794 4.37E-214 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 Gene3D G3DSA:1.10.1400.10 542 678 3.3E-138 T 31-10-2018 Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 Gene3D G3DSA:3.60.20.10 248 769 3.3E-138 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 Gene3D G3DSA:1.10.439.10 13 176 8.4E-52 T 31-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 Y89_0323 917b66eaa130e132863ccb6bd2f21502 795 Gene3D G3DSA:2.30.120.10 320 391 3.3E-138 T 31-10-2018 Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 360 370 2.6E-41 T 31-10-2018 IPR001775 GspD/PilQ family Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 434 458 2.6E-41 T 31-10-2018 IPR001775 GspD/PilQ family Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 569 587 2.6E-41 T 31-10-2018 IPR001775 GspD/PilQ family Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 469 479 2.6E-41 T 31-10-2018 IPR001775 GspD/PilQ family Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 PRINTS PR00811 Bacterial general secretion pathway protein D signature 592 606 2.6E-41 T 31-10-2018 IPR001775 GspD/PilQ family Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Pfam PF03958 Bacterial type II/III secretion system short domain 281 360 4.8E-16 T 31-10-2018 IPR005644 NolW-like Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Pfam PF03958 Bacterial type II/III secretion system short domain 146 205 3.0E-9 T 31-10-2018 IPR005644 NolW-like Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Pfam PF03958 Bacterial type II/III secretion system short domain 210 276 2.9E-13 T 31-10-2018 IPR005644 NolW-like Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Pfam PF00263 Bacterial type II and III secretion system protein 438 605 1.3E-53 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Gene3D G3DSA:3.30.1370.120 51 203 1.8E-58 T 31-10-2018 IPR038591 NolW-like superfamily Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Gene3D G3DSA:3.30.1370.120 205 277 1.5E-18 T 31-10-2018 IPR038591 NolW-like superfamily Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 Gene3D G3DSA:3.30.1370.120 278 358 1.4E-15 T 31-10-2018 IPR038591 NolW-like superfamily Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 55 613 3.8E-163 T 31-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Y89_1914 1a438bb575b68e1cb5ccda6f96243946 658 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 550 583 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y89_3107 aedd0867b9315083987a503cdd63c064 258 SUPERFAMILY SSF53474 4 238 3.95E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3107 aedd0867b9315083987a503cdd63c064 258 Pfam PF00326 Prolyl oligopeptidase family 48 239 1.8E-11 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Y89_3107 aedd0867b9315083987a503cdd63c064 258 Gene3D G3DSA:3.40.50.1820 29 243 8.0E-48 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3107 aedd0867b9315083987a503cdd63c064 258 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 84 114 - T 31-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 Y89_4888 26bae88f8c3f402608c39bc87474088c 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 186 1.0E-85 T 31-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Y89_4888 26bae88f8c3f402608c39bc87474088c 192 SUPERFAMILY SSF89028 7 186 5.89E-60 T 31-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Y89_4888 26bae88f8c3f402608c39bc87474088c 192 Pfam PF01923 Cobalamin adenosyltransferase 8 173 7.9E-56 T 31-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Y89_4888 26bae88f8c3f402608c39bc87474088c 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 186 8.8E-53 T 31-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Y89_4888 26bae88f8c3f402608c39bc87474088c 192 Gene3D G3DSA:1.20.1200.10 17 190 2.4E-57 T 31-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Y89_4407 4636bed2f34f4d4e787449df047ecbdf 117 SUPERFAMILY SSF52833 5 116 3.94E-35 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4407 4636bed2f34f4d4e787449df047ecbdf 117 Pfam PF03960 ArsC family 9 115 3.7E-19 T 31-10-2018 IPR006660 Arsenate reductase-like Y89_4407 4636bed2f34f4d4e787449df047ecbdf 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 6 116 7.3E-45 T 31-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 Y89_4407 4636bed2f34f4d4e787449df047ecbdf 117 Gene3D G3DSA:3.40.30.10 1 117 6.1E-48 T 31-10-2018 Y89_2926 af77637df312c178fe39d59e289140bf 399 Gene3D G3DSA:3.40.190.10 159 386 7.1E-41 T 31-10-2018 Y89_2926 af77637df312c178fe39d59e289140bf 399 Gene3D G3DSA:3.40.190.10 40 123 4.1E-15 T 31-10-2018 Y89_2926 af77637df312c178fe39d59e289140bf 399 Pfam PF13379 NMT1-like family 38 279 4.1E-44 T 31-10-2018 Y89_2926 af77637df312c178fe39d59e289140bf 399 SUPERFAMILY SSF53213 285 359 5.49E-5 T 31-10-2018 Y89_2926 af77637df312c178fe39d59e289140bf 399 SUPERFAMILY SSF53850 42 276 8.54E-35 T 31-10-2018 Y89_2117 2bb6b7a3b5abb5043e0856181e6c4a10 208 Gene3D G3DSA:3.40.50.10230 1 208 1.0E-85 T 31-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 Y89_2117 2bb6b7a3b5abb5043e0856181e6c4a10 208 SUPERFAMILY SSF63965 1 205 3.14E-74 T 31-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 Y89_2117 2bb6b7a3b5abb5043e0856181e6c4a10 208 Pfam PF02570 Precorrin-8X methylmutase 11 205 4.2E-73 T 31-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF55021 813 879 6.66E-11 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF109604 426 591 1.07E-13 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF81593 205 314 1.41E-12 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01909 Nucleotidyltransferase domain 72 114 1.0E-7 T 31-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:1.10.3210.10 446 590 2.7E-7 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 PIRSF PIRSF006288 12 892 0.0 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01966 HD domain 463 569 2.1E-10 T 31-10-2018 IPR006674 HD domain Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF01842 ACT domain 816 873 1.6E-7 T 31-10-2018 IPR002912 ACT domain Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 897 345.024 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Pfam PF08335 GlnD PII-uridylyltransferase 185 323 5.3E-37 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 SUPERFAMILY SSF81301 8 181 3.0E-24 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:3.30.70.260 811 893 1.1E-5 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:3.30.460.10 54 172 3.5E-5 T 31-10-2018 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 36 885 0.0 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 SMART SM00471 457 604 1.7E-9 T 31-10-2018 IPR003607 HD/PDEase domain Y89_1368 a3996c0f4ed6255b5b73ef0d36b90b05 900 Gene3D G3DSA:1.20.120.330 186 325 1.6E-5 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 ProSitePatterns PS00455 Putative AMP-binding domain signature. 657 668 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1437 1452 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.30.559.10 64 245 5.3E-47 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Pfam PF00668 Condensation domain 69 490 5.3E-24 T 31-10-2018 IPR001242 Condensation domain Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF53335 1133 1315 3.09E-15 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 PRINTS PR00154 AMP-binding signature 664 672 5.8E-5 T 31-10-2018 IPR020459 AMP-binding Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 PRINTS PR00154 AMP-binding signature 652 663 5.8E-5 T 31-10-2018 IPR020459 AMP-binding Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.30.300.30 1316 1393 1.4E-10 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.30.300.30 910 999 1.1E-11 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 541 938 5.6E-118 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.40.50.150 1112 1315 2.8E-31 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF47336 1407 1484 7.33E-12 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Pfam PF08242 Methyltransferase domain 1162 1267 7.2E-9 T 31-10-2018 IPR013217 Methyltransferase type 12 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:1.10.10.1830 2 54 2.2E-12 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF53474 1520 1797 1.32E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF52777 250 492 4.78E-42 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.30.559.30 248 497 8.6E-79 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF56801 506 1425 2.98E-133 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:3.40.50.12780 511 909 5.3E-117 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Pfam PF00501 AMP-binding enzyme 520 915 1.1E-90 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 SUPERFAMILY SSF52777 66 262 1.11E-17 T 31-10-2018 Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Gene3D G3DSA:1.10.1200.10 1403 1491 1.7E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0797 da1cdf5b1275a8f87cd0c6668b9fb6c5 1809 Pfam PF00550 Phosphopantetheine attachment site 1415 1458 2.7E-7 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_5122 6ce8e78fb07a8bda9dc713f7de5944fb 128 Pfam PF11990 Protein of unknown function (DUF3487) 11 125 2.4E-36 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_5122 6ce8e78fb07a8bda9dc713f7de5944fb 128 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 13 124 3.0E-39 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 1.6E-11 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 1.6E-11 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 1.6E-11 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 SMART SM00411 3 92 1.2E-28 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 SUPERFAMILY SSF47729 3 92 7.65E-28 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 Gene3D G3DSA:4.10.520.10 1 93 2.8E-31 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_1083 1f51be8b5f25b377479cee1b71978da1 93 Pfam PF00216 Bacterial DNA-binding protein 3 92 3.1E-28 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_0696 ba8f13f5a002a02ef9c5b0685cee39f6 386 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 106 272 4.0E-33 T 31-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain Y89_0696 ba8f13f5a002a02ef9c5b0685cee39f6 386 Pfam PF17482 Phage tail sheath C-terminal domain 273 375 2.3E-20 T 31-10-2018 IPR020287 Tail sheath protein, C-terminal domain Y89_3307 352ebdd38253781d834369952ed91d04 134 SUPERFAMILY SSF46955 5 121 2.49E-24 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_3307 352ebdd38253781d834369952ed91d04 134 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3307 352ebdd38253781d834369952ed91d04 134 Gene3D G3DSA:1.10.1660.10 3 133 2.2E-25 T 31-10-2018 Y89_3307 352ebdd38253781d834369952ed91d04 134 Pfam PF13411 MerR HTH family regulatory protein 5 70 4.2E-16 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3307 352ebdd38253781d834369952ed91d04 134 SMART SM00422 5 72 2.4E-17 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3763 afcba7356bbbe5adcef48cd76e327df9 198 ProDom PD357862 YIJF PERIPLASMIC ECS4873 PRECURSOR CC1379 SIGNAL DOMAIN PM0035 29 195 3.0E-93 T 31-10-2018 IPR009706 Protein of unknown function DUF1287 Y89_3763 afcba7356bbbe5adcef48cd76e327df9 198 Pfam PF06940 Domain of unknown function (DUF1287) 34 195 3.1E-66 T 31-10-2018 IPR009706 Protein of unknown function DUF1287 Y89_3763 afcba7356bbbe5adcef48cd76e327df9 198 PIRSF PIRSF011444 3 198 1.1E-90 T 31-10-2018 IPR009706 Protein of unknown function DUF1287 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 4 243 2.3E-97 T 31-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 Gene3D G3DSA:3.40.50.1580 1 245 1.2E-82 T 31-10-2018 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 50 90 - T 31-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 Pfam PF01048 Phosphorylase superfamily 4 243 1.4E-42 T 31-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 2 245 34.098 T 31-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 Y89_2015 ae4a6f095aa5cd74db630046e2ebf75d 245 SUPERFAMILY SSF53167 4 243 4.03E-78 T 31-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 112 129 - T 31-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 SUPERFAMILY SSF51230 80 155 2.62E-25 T 31-10-2018 IPR011053 Single hybrid motif Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 1.3E-17 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 1.3E-17 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 1.3E-17 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 155 6.1E-60 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 Pfam PF00364 Biotin-requiring enzyme 82 155 4.4E-26 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_5517 9b387a2d07e3cf2a79d9a5dd7e7c09d0 156 Gene3D G3DSA:2.40.50.100 77 155 5.2E-31 T 31-10-2018 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 PIRSF PIRSF000005 1 212 2.7E-65 T 31-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 28 102 3.3E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 SUPERFAMILY SSF46626 21 103 2.07E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 Gene3D G3DSA:1.10.760.10 120 210 3.7E-21 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 SUPERFAMILY SSF46626 125 210 7.78E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 Pfam PF00034 Cytochrome c 141 210 9.9E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2719 9b771dde1347cc730e297c48c4730f7c 217 Gene3D G3DSA:1.10.760.10 22 107 1.9E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0310 1b46e808e1d482f8d96b60e45a6e1cf6 368 Gene3D G3DSA:3.75.10.10 2 367 8.4E-154 T 31-10-2018 Y89_0310 1b46e808e1d482f8d96b60e45a6e1cf6 368 Hamap MF_01841 Agmatine deiminase [aguA]. 6 364 63.123 T 31-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y89_0310 1b46e808e1d482f8d96b60e45a6e1cf6 368 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 6 364 1.3E-184 T 31-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y89_0310 1b46e808e1d482f8d96b60e45a6e1cf6 368 SUPERFAMILY SSF55909 5 364 7.5E-147 T 31-10-2018 Y89_0310 1b46e808e1d482f8d96b60e45a6e1cf6 368 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 14 363 1.8E-129 T 31-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SUPERFAMILY SSF55785 152 252 5.76E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Gene3D G3DSA:1.10.287.950 238 430 1.1E-40 T 31-10-2018 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SMART SM00086 92 134 3.1E-4 T 31-10-2018 IPR001610 PAC motif Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SMART SM00086 212 254 0.065 T 31-10-2018 IPR001610 PAC motif Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Pfam PF13426 PAS domain 154 253 2.1E-13 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Pfam PF13426 PAS domain 36 132 3.1E-13 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SMART SM00283 226 431 1.3E-15 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 9.7E-25 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 381 9.7E-25 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 350 9.7E-25 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 134 2.5E-15 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 150 260 3.2E-15 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Gene3D G3DSA:3.30.450.20 6 143 2.0E-24 T 31-10-2018 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SUPERFAMILY SSF58104 248 428 2.62E-49 T 31-10-2018 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 298 427 5.6E-33 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SMART SM00091 139 207 0.0051 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SMART SM00091 17 87 2.6 T 31-10-2018 IPR000014 PAS domain Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 Gene3D G3DSA:3.30.450.20 144 237 2.9E-5 T 31-10-2018 Y89_3391 8daf5a5560399dbb24c0872ed3acb1b0 431 SUPERFAMILY SSF55785 30 132 8.9E-24 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5520 93e147ea9040c3070f5648a73fe4a19f 425 Pfam PF13719 zinc-ribbon domain 6 41 2.3E-10 T 31-10-2018 IPR011723 Zinc finger/thioredoxin putative Y89_5520 93e147ea9040c3070f5648a73fe4a19f 425 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 41 3.6E-18 T 31-10-2018 IPR011723 Zinc finger/thioredoxin putative Y89_5520 93e147ea9040c3070f5648a73fe4a19f 425 Pfam PF11906 Protein of unknown function (DUF3426) 276 421 2.6E-37 T 31-10-2018 IPR021834 Protein of unknown function DUF3426 Y89_0095 af55f09929ed2e94d1582a23ac294bfb 162 Pfam PF05638 Type VI secretion system effector, Hcp 6 136 1.2E-43 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_0095 af55f09929ed2e94d1582a23ac294bfb 162 SUPERFAMILY SSF141452 2 160 2.88E-58 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_0095 af55f09929ed2e94d1582a23ac294bfb 162 Gene3D G3DSA:2.30.110.20 1 162 1.6E-74 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_0095 af55f09929ed2e94d1582a23ac294bfb 162 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 13 144 9.0E-17 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_2950 a08b3f24d62d087e5815116ff3cdab54 362 SUPERFAMILY SSF51197 23 336 1.51E-81 T 31-10-2018 Y89_2950 a08b3f24d62d087e5815116ff3cdab54 362 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 334 1.6E-49 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_2950 a08b3f24d62d087e5815116ff3cdab54 362 Gene3D G3DSA:3.60.130.10 23 338 1.4E-97 T 31-10-2018 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Gene3D G3DSA:2.40.180.10 1 455 1.6E-213 T 31-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 SUPERFAMILY SSF56634 21 551 4.19E-223 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Gene3D G3DSA:3.40.50.880 553 706 4.0E-38 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Pfam PF00199 Catalase 44 428 1.1E-180 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PIRSF PIRSF038927 1 707 0.0 T 31-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 ProSitePatterns PS00438 Catalase proximal active site signature. 79 95 - T 31-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 SUPERFAMILY SSF52317 555 682 6.54E-20 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3130 d698369f9bc34b3581548238ad4e033f 709 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 373 381 - T 31-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Pfam PF01965 DJ-1/PfpI family 558 665 5.8E-12 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Pfam PF06628 Catalase-related immune-responsive 461 524 3.0E-20 T 31-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 SMART SM01060 43 431 3.8E-276 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 Gene3D G3DSA:1.20.1370.20 458 552 1.1E-32 T 31-10-2018 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 360 386 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 56 79 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 159 177 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 328 355 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 140 157 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3130 d698369f9bc34b3581548238ad4e033f 709 PRINTS PR00067 Catalase signature 119 137 7.0E-70 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 321 347 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 124 142 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 289 316 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 84 102 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 21 44 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PRINTS PR00067 Catalase signature 105 122 2.4E-71 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 Gene3D G3DSA:2.40.180.10 3 482 2.4E-236 T 31-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 Pfam PF06628 Catalase-related immune-responsive 418 477 1.1E-20 T 31-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 PIRSF PIRSF038928 1 482 1.6E-221 T 31-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 334 342 - T 31-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 SUPERFAMILY SSF56634 3 481 3.79E-211 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 SMART SM01060 8 393 2.5E-283 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 31-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0786 07dd5d23b964a2d7151e58d18875ad23 482 Pfam PF00199 Catalase 8 390 5.7E-187 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 125 137 - T 31-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 Gene3D G3DSA:3.30.200.20 2 87 3.0E-28 T 31-10-2018 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 Gene3D G3DSA:3.40.50.410 613 809 1.2E-11 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 Pfam PF00069 Protein kinase domain 9 250 4.2E-50 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 14 37 - T 31-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 Pfam PF00092 von Willebrand factor type A domain 616 780 7.0E-6 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 SUPERFAMILY SSF56112 6 341 8.9E-77 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 SMART SM00327 613 804 2.5E-9 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 Gene3D G3DSA:1.10.510.10 89 274 4.0E-47 T 31-10-2018 Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 SUPERFAMILY SSF53300 615 793 2.23E-12 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_0084 58c554c2e0b3a19ceaa6d121d9f70eb7 1032 SMART SM00220 8 263 5.1E-66 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_4451 0114a9e8d8da9e27ee69cfc58c0f0009 124 Pfam PF16931 Putative phage holin 1 120 4.5E-35 T 31-10-2018 IPR032637 Putative phage holin-like Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 Pfam PF13726 Na+-H+ antiporter family 2 88 4.8E-32 T 31-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 Pfam PF03553 Na+/H+ antiporter family 151 435 5.2E-77 T 31-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 1.4E-6 T 31-10-2018 Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 PRINTS PR00173 Glutamate-aspartate symporter signature 374 393 1.4E-6 T 31-10-2018 Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 1.4E-6 T 31-10-2018 Y89_2435 c19057820b6b7d7b54e26dc01cf75402 441 PRINTS PR00173 Glutamate-aspartate symporter signature 253 272 1.4E-6 T 31-10-2018 Y89_4065 f6c3e56dc0c563926f856086188d3be3 137 Gene3D G3DSA:1.10.10.10 3 136 3.2E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4065 f6c3e56dc0c563926f856086188d3be3 137 Pfam PF12802 MarR family 30 86 7.7E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4065 f6c3e56dc0c563926f856086188d3be3 137 SUPERFAMILY SSF46785 3 134 2.06E-29 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4065 f6c3e56dc0c563926f856086188d3be3 137 SMART SM00347 24 123 1.4E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2933 e39b14b53d42cbd94daaba3050875b43 450 PIRSF PIRSF002746 5 450 2.2E-161 T 31-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y89_2933 e39b14b53d42cbd94daaba3050875b43 450 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 15 450 3.7E-162 T 31-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y89_2933 e39b14b53d42cbd94daaba3050875b43 450 Pfam PF02447 GntP family permease 10 449 3.0E-184 T 31-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Y89_1889 5116dea1729aedca1c877166ec120c83 145 SUPERFAMILY SSF54637 3 139 2.8E-39 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1889 5116dea1729aedca1c877166ec120c83 145 Gene3D G3DSA:3.10.129.10 5 138 6.9E-33 T 31-10-2018 Y89_1889 5116dea1729aedca1c877166ec120c83 145 Pfam PF13279 Thioesterase-like superfamily 15 134 3.1E-12 T 31-10-2018 Y89_0922 2536bf73404578115174c73e1916167c 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 235 1.7E-21 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0922 2536bf73404578115174c73e1916167c 246 SMART SM00862 159 235 2.7E-21 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0922 2536bf73404578115174c73e1916167c 246 Gene3D G3DSA:3.40.50.2300 1 125 3.7E-37 T 31-10-2018 Y89_0922 2536bf73404578115174c73e1916167c 246 Gene3D G3DSA:1.10.10.10 129 238 2.7E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0922 2536bf73404578115174c73e1916167c 246 SUPERFAMILY SSF46894 135 236 7.94E-24 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0922 2536bf73404578115174c73e1916167c 246 Pfam PF00072 Response regulator receiver domain 7 118 2.9E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0922 2536bf73404578115174c73e1916167c 246 SMART SM00448 5 117 4.2E-41 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0922 2536bf73404578115174c73e1916167c 246 SUPERFAMILY SSF52172 6 133 4.41E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1853 6ee7f2101997c7d7f4f91568baf3f411 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 220 6.6E-82 T 31-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y89_1853 6ee7f2101997c7d7f4f91568baf3f411 229 SUPERFAMILY SSF52540 8 223 2.01E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1853 6ee7f2101997c7d7f4f91568baf3f411 229 Pfam PF02224 Cytidylate kinase 9 223 9.5E-77 T 31-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y89_1853 6ee7f2101997c7d7f4f91568baf3f411 229 Hamap MF_00238 Cytidylate kinase [cmk]. 6 226 34.703 T 31-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Y89_1853 6ee7f2101997c7d7f4f91568baf3f411 229 Gene3D G3DSA:3.40.50.300 1 226 1.9E-83 T 31-10-2018 Y89_0121 e8c4f02e6ce354719aa7d4a02d7a15b5 264 Pfam PF02104 SURF1 family 40 237 1.2E-31 T 31-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2014 0f988fae7437c1f44cea5daf6855d483 332 SUPERFAMILY SSF51445 3 287 2.95E-82 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_2014 0f988fae7437c1f44cea5daf6855d483 332 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 330 49.824 T 31-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 Y89_2014 0f988fae7437c1f44cea5daf6855d483 332 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 230 247 - T 31-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Y89_2014 0f988fae7437c1f44cea5daf6855d483 332 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 10 294 1.1E-77 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_2014 0f988fae7437c1f44cea5daf6855d483 332 Gene3D G3DSA:3.20.20.300 1 332 1.6E-140 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Pfam PF00529 HlyD membrane-fusion protein of T1SS 20 339 1.3E-8 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Gene3D G3DSA:2.40.50.100 47 78 1.5E-10 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Gene3D G3DSA:1.10.287.470 113 179 1.2E-7 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 57 77 2.0E-9 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 329 344 2.0E-9 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Gene3D G3DSA:2.40.30.170 226 343 1.4E-35 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Gene3D G3DSA:1.10.287.470 79 109 1.5E-10 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 SUPERFAMILY SSF111369 188 284 1.15E-11 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 SUPERFAMILY SSF111369 117 178 1.96E-5 T 31-10-2018 Y89_1883 499b2481993037c39abc2c1fadd91f44 344 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 286 1.4E-18 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_1883 499b2481993037c39abc2c1fadd91f44 344 SUPERFAMILY SSF111369 45 104 6.67E-7 T 31-10-2018 Y89_1887 0829b5f29f23c47b99e56e7450562125 285 Gene3D G3DSA:3.40.50.1820 55 267 8.8E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1887 0829b5f29f23c47b99e56e7450562125 285 Pfam PF12146 Serine aminopeptidase, S33 68 177 9.0E-12 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_1887 0829b5f29f23c47b99e56e7450562125 285 SUPERFAMILY SSF53474 58 252 2.8E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0144 52686d1e87b65186fb45bbd7babd221e 95 Pfam PF07883 Cupin domain 23 90 7.9E-8 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_0144 52686d1e87b65186fb45bbd7babd221e 95 SUPERFAMILY SSF51182 4 91 5.2E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0144 52686d1e87b65186fb45bbd7babd221e 95 Gene3D G3DSA:2.60.120.10 2 95 2.4E-27 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 31-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 Gene3D G3DSA:1.10.287.310 1 62 1.5E-28 T 31-10-2018 Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.3E-21 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 Pfam PF00831 Ribosomal L29 protein 4 59 3.1E-23 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.891 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0767 3cab79791998fd7a72b4a131eb8f6227 63 SUPERFAMILY SSF46561 1 61 1.44E-21 T 31-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Gene3D G3DSA:1.25.40.10 285 350 1.9E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SUPERFAMILY SSF48452 391 559 1.08E-23 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Pfam PF14559 Tetratricopeptide repeat 233 290 5.5E-11 T 31-10-2018 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SUPERFAMILY SSF48452 133 460 1.35E-19 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Pfam PF13432 Tetratricopeptide repeat 311 347 0.017 T 31-10-2018 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Pfam PF13432 Tetratricopeptide repeat 430 493 1.4E-5 T 31-10-2018 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Pfam PF13432 Tetratricopeptide repeat 501 559 6.7E-8 T 31-10-2018 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Gene3D G3DSA:1.25.40.10 90 219 3.0E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Gene3D G3DSA:1.25.40.10 351 569 2.7E-32 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 Gene3D G3DSA:1.25.40.10 220 284 3.1E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 288 321 170.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 390 423 120.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 355 388 160.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 220 253 96.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 424 457 170.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 493 526 0.055 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_5278 a01229d00941df0e0e57f00e127e4609 575 SMART SM00028 458 492 97.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_3279 3e1420c3441d99dd7bee595b7c09dd3f 624 Gene3D G3DSA:3.10.620.30 246 377 3.7E-28 T 31-10-2018 Y89_3279 3e1420c3441d99dd7bee595b7c09dd3f 624 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 46 205 2.4E-26 T 31-10-2018 IPR024618 Domain of unknown function DUF3857 Y89_3279 3e1420c3441d99dd7bee595b7c09dd3f 624 SUPERFAMILY SSF54001 265 420 1.59E-12 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_3279 3e1420c3441d99dd7bee595b7c09dd3f 624 Pfam PF01841 Transglutaminase-like superfamily 263 334 8.6E-7 T 31-10-2018 IPR002931 Transglutaminase-like Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 314 3.3E-38 T 31-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 Gene3D G3DSA:3.20.20.70 3 331 2.8E-87 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 6 331 41.841 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF13353 4Fe-4S single cluster domain 22 121 1.1E-6 T 31-10-2018 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 331 8.4E-113 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 Pfam PF04055 Radical SAM superfamily 20 179 2.0E-30 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 21 32 - T 31-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 SUPERFAMILY SSF102114 6 278 8.89E-77 T 31-10-2018 Y89_3833 34f83a557d7d0969bf4aff943ae18b7b 331 SMART SM00729 15 219 2.2E-14 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 Pfam PF00384 Molybdopterin oxidoreductase 318 495 8.5E-10 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 Pfam PF00384 Molybdopterin oxidoreductase 113 253 8.0E-11 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 SUPERFAMILY SSF50692 649 768 2.49E-14 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 Gene3D G3DSA:3.40.50.740 126 500 1.7E-69 T 31-10-2018 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 Gene3D G3DSA:3.40.228.10 185 407 1.7E-69 T 31-10-2018 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 17 765 1.8E-288 T 31-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 PIRSF PIRSF000144 2 770 0.0 T 31-10-2018 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 Pfam PF01568 Molydopterin dinucleotide binding domain 652 737 1.7E-5 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_5867 c9c2292c441549d95e9bdff9bee4eb20 773 SUPERFAMILY SSF53706 51 634 3.53E-147 T 31-10-2018 Y89_6094 973097320f52fb0029e979d1e36892ab 251 SUPERFAMILY SSF46785 3 73 5.74E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6094 973097320f52fb0029e979d1e36892ab 251 SUPERFAMILY SSF48008 91 232 1.14E-26 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_6094 973097320f52fb0029e979d1e36892ab 251 Gene3D G3DSA:1.20.120.530 93 234 8.7E-33 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_6094 973097320f52fb0029e979d1e36892ab 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 2.9E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6094 973097320f52fb0029e979d1e36892ab 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 2.9E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6094 973097320f52fb0029e979d1e36892ab 251 Pfam PF07729 FCD domain 94 224 3.8E-26 T 31-10-2018 IPR011711 GntR, C-terminal Y89_6094 973097320f52fb0029e979d1e36892ab 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 69 2.7E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6094 973097320f52fb0029e979d1e36892ab 251 Gene3D G3DSA:1.10.10.10 1 75 1.5E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6094 973097320f52fb0029e979d1e36892ab 251 SMART SM00345 10 69 5.8E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6094 973097320f52fb0029e979d1e36892ab 251 SMART SM00895 94 225 3.4E-26 T 31-10-2018 IPR011711 GntR, C-terminal Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 54 333 2.2E-140 T 31-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 292 318 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88659 230 327 2.62E-25 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 96 322 3.0E-37 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04542 Sigma-70 region 2 99 168 7.5E-22 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.10.10 249 325 8.6E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.601.10 26 168 1.2E-47 T 31-10-2018 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88946 61 169 2.88E-45 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Gene3D G3DSA:1.10.10.10 172 247 2.7E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04539 Sigma-70 region 3 179 253 2.7E-20 T 31-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 4 333 40.747 T 31-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 123 136 5.9E-28 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 307 318 5.9E-28 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 292 307 5.9E-28 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 147 155 5.9E-28 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 PRINTS PR00046 Major sigma-70 factor signature 271 283 5.9E-28 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF04545 Sigma-70, region 4 267 320 1.3E-15 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 SUPERFAMILY SSF88659 172 246 5.67E-14 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 Pfam PF00140 Sigma-70 factor, region 1.2 61 93 3.2E-13 T 31-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1404 9f0010d7c668db6bec136c6e164678f2 334 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 123 136 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 Gene3D G3DSA:1.10.10.10 8 93 1.1E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.0E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 SUPERFAMILY SSF46785 7 88 8.16E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 Gene3D G3DSA:3.40.190.290 96 297 1.9E-57 T 31-10-2018 Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 SUPERFAMILY SSF53850 95 297 1.09E-42 T 31-10-2018 Y89_4224 3d8cbb1bb190214b7554e71f7b5745d1 303 Pfam PF03466 LysR substrate binding domain 94 296 1.6E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 SUPERFAMILY SSF82784 4 130 1.19E-20 T 31-10-2018 IPR036102 OsmC/Ohr superfamily Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 208 543 1.9E-70 T 31-10-2018 IPR003776 YcaO-like domain Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 Gene3D G3DSA:3.30.300.20 4 131 2.1E-15 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 Pfam PF02566 OsmC-like protein 35 129 6.0E-10 T 31-10-2018 IPR003718 OsmC/Ohr family Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 162 554 3.6E-95 T 31-10-2018 IPR003776 YcaO-like domain Y89_3395 0189122b8a329c2ceb0f99b036f75430 759 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 5 730 0.0 T 31-10-2018 IPR019938 YcaO domain protein Y89_0036 c50013b63e15e575a212e94b263814c3 307 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 22 305 2.4E-127 T 31-10-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y89_0036 c50013b63e15e575a212e94b263814c3 307 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 279 1.1E-55 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_0036 c50013b63e15e575a212e94b263814c3 307 Gene3D G3DSA:3.40.190.10 30 288 9.3E-84 T 31-10-2018 Y89_0036 c50013b63e15e575a212e94b263814c3 307 SUPERFAMILY SSF53850 22 295 2.35E-81 T 31-10-2018 Y89_0036 c50013b63e15e575a212e94b263814c3 307 Gene3D G3DSA:3.40.190.100 111 220 9.3E-84 T 31-10-2018 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 31-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 SUPERFAMILY SSF48557 3 505 4.08E-191 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 Gene3D G3DSA:1.10.275.10 1 196 5.2E-69 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 Gene3D G3DSA:1.20.200.10 197 508 8.5E-127 T 31-10-2018 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 Pfam PF00221 Aromatic amino acid lyase 10 469 1.0E-184 T 31-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 44.866 T 31-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5769 a233ba3c2ce61af3b32db969d8c03969 509 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 507 1.8E-219 T 31-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Gene3D G3DSA:3.30.700.10 9 57 6.1E-5 T 31-10-2018 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 4 18 4.7E-6 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 19 33 4.7E-6 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 PRINTS PR00885 Bacterial general secretion pathway protein H signature 124 139 4.7E-6 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 2.5E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 6.7E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 SUPERFAMILY SSF54523 9 81 8.63E-11 T 31-10-2018 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 4 149 5.8E-57 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_4755 b0213e09aa05ff90d8a45ef7f1ce1b60 149 Pfam PF12019 Type II transport protein GspH 44 138 9.1E-5 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y89_6401 ba1f2060dba828b75d1d69faa9a0926e 700 Gene3D G3DSA:3.40.1350.10 558 636 2.6E-5 T 31-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Y89_6401 ba1f2060dba828b75d1d69faa9a0926e 700 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 152 2.0E-20 T 31-10-2018 Y89_6401 ba1f2060dba828b75d1d69faa9a0926e 700 SUPERFAMILY SSF55874 19 143 1.02E-16 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6401 ba1f2060dba828b75d1d69faa9a0926e 700 Gene3D G3DSA:3.30.565.10 5 166 5.6E-25 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2822 e0d65c6bf43c35862054189129dbf404 401 Gene3D G3DSA:3.40.190.10 82 330 2.8E-21 T 31-10-2018 Y89_2822 e0d65c6bf43c35862054189129dbf404 401 Gene3D G3DSA:3.40.190.10 171 341 2.8E-21 T 31-10-2018 Y89_2822 e0d65c6bf43c35862054189129dbf404 401 SUPERFAMILY SSF53850 63 351 1.52E-33 T 31-10-2018 Y89_2822 e0d65c6bf43c35862054189129dbf404 401 Pfam PF13343 Bacterial extracellular solute-binding protein 131 313 2.0E-10 T 31-10-2018 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 5.2E-27 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 5.2E-27 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 5.2E-27 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 5.2E-27 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 79.575 T 31-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 6.7E-46 T 31-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 Gene3D G3DSA:3.40.50.1370 134 295 7.5E-111 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 SUPERFAMILY SSF53671 2 300 1.07E-103 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 Gene3D G3DSA:3.40.50.1370 4 133 7.5E-111 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 5.3E-29 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 5.3E-29 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 5.3E-29 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 5.3E-29 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 5.3E-29 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 8.3E-50 T 31-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y89_1490 acd0dad31c2287b8f44f8171641f1e87 305 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 299 3.9E-116 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 25 46 2.9E-31 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 3 18 2.9E-31 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 60 72 2.9E-31 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 PRINTS PR00297 10kDa chaperonin signature 82 95 2.9E-31 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 4.4E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 SUPERFAMILY SSF50129 1 96 5.56E-34 T 31-10-2018 IPR011032 GroES-like superfamily Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 31-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 26.57 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 SMART SM00883 2 95 9.5E-56 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Y89_4875 5346c5c2f4ce088d6e5028068f1e4220 97 Gene3D G3DSA:2.30.33.40 1 97 2.9E-36 T 31-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 ProDom PD002657 PLASMID COLICIN BACTERIOCIN TRANSMEMBRANE ANTIBIOTIC MEMBRANE ANTIMICROBIAL E1 IB 3D-STRUCTURE 318 498 5.0E-100 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 PRINTS PR00280 Channel forming colicin signature 355 370 1.1E-16 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 PRINTS PR00280 Channel forming colicin signature 446 464 1.1E-16 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 PRINTS PR00280 Channel forming colicin signature 432 445 1.1E-16 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 PRINTS PR00280 Channel forming colicin signature 374 390 1.1E-16 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 Gene3D G3DSA:1.10.490.30 309 498 2.5E-64 T 31-10-2018 IPR038283 Channel forming colicin, C-terminal domain superfamily Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 SUPERFAMILY SSF56837 220 497 1.57E-81 T 31-10-2018 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 ProSitePatterns PS00276 Channel forming colicins signature. 432 443 - T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_4372 22a394c97311da1855aed4fbc6f69df3 498 Pfam PF01024 Colicin pore forming domain 311 494 1.8E-88 T 31-10-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 Y89_2348 d122ac539a99892472367d7934b5bcfb 661 Pfam PF13476 AAA domain 8 233 5.4E-13 T 31-10-2018 IPR038729 Rad50/SbcC-type AAA domain Y89_2348 d122ac539a99892472367d7934b5bcfb 661 Gene3D G3DSA:3.40.50.300 4 294 5.5E-18 T 31-10-2018 Y89_2348 d122ac539a99892472367d7934b5bcfb 661 Gene3D G3DSA:3.40.50.300 305 634 2.3E-11 T 31-10-2018 Y89_2348 d122ac539a99892472367d7934b5bcfb 661 TIGRFAM TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD 4 647 4.3E-206 T 31-10-2018 IPR017599 DNA sulphur modification protein DndD Y89_2348 d122ac539a99892472367d7934b5bcfb 661 SUPERFAMILY SSF52540 6 618 3.9E-17 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.9E-47 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.6E-45 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 SUPERFAMILY SSF50692 1 120 2.49E-46 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 Gene3D G3DSA:2.40.40.20 1 126 2.7E-50 T 31-10-2018 Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 65.559 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 PIRSF PIRSF006246 1 125 7.5E-50 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y89_5344 e6315abd66cc3c595038a661e21e1a04 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-66 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 Gene3D G3DSA:1.10.760.10 315 433 1.1E-17 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 SUPERFAMILY SSF46626 38 168 1.93E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 SUPERFAMILY SSF46626 327 419 2.74E-17 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 Pfam PF00034 Cytochrome c 47 146 4.8E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 327 407 9.1E-10 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 PIRSF PIRSF000018 15 433 2.3E-137 T 31-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 SUPERFAMILY SSF46626 190 296 1.43E-14 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 Gene3D G3DSA:1.10.760.10 173 302 1.7E-8 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3735 4820dc1c100968db2e5799b84ee42c9e 433 Gene3D G3DSA:1.10.760.10 2 155 1.8E-10 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0971 bdabc59ef86cebeec4adebf4aa60e3a6 158 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 16 151 8.4E-54 T 31-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0971 bdabc59ef86cebeec4adebf4aa60e3a6 158 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 10 155 30.962 T 31-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0971 bdabc59ef86cebeec4adebf4aa60e3a6 158 Gene3D G3DSA:3.40.50.960 3 157 1.7E-59 T 31-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0971 bdabc59ef86cebeec4adebf4aa60e3a6 158 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 16 152 1.7E-56 T 31-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0971 bdabc59ef86cebeec4adebf4aa60e3a6 158 SUPERFAMILY SSF52121 5 155 7.2E-61 T 31-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 Pfam PF03466 LysR substrate binding domain 88 294 1.9E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 SUPERFAMILY SSF46785 2 81 1.4E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.8E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.8E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.8E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 Gene3D G3DSA:1.10.10.10 3 93 1.1E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.0E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 SUPERFAMILY SSF53850 92 295 2.53E-36 T 31-10-2018 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 TIGRFAM TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor 3 293 1.3E-139 T 31-10-2018 IPR017786 Transcription factor, choline sulphate-utilisation, putative Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 Gene3D G3DSA:3.40.190.10 100 290 1.3E-51 T 31-10-2018 Y89_0038 43d8c54d0e8ad1e5b77a883efa7fcd4f 299 Gene3D G3DSA:3.40.190.10 160 263 1.3E-51 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 285 2.4E-18 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:1.10.287.470 174 201 3.8E-18 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 SUPERFAMILY SSF111369 107 253 8.11E-14 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 SUPERFAMILY SSF111369 40 94 5.23E-6 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:2.40.30.170 237 316 3.8E-18 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:1.10.287.470 105 166 2.4E-11 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:2.40.50.100 202 236 3.8E-18 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:2.40.50.100 38 71 2.4E-11 T 31-10-2018 Y89_1607 e171593b4260050a670c55551388febd 323 Gene3D G3DSA:1.10.287.470 72 95 2.4E-11 T 31-10-2018 Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 SMART SM00448 1 113 4.5E-46 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 SUPERFAMILY SSF52172 1 173 2.7E-43 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 Gene3D G3DSA:3.40.50.2300 1 120 2.6E-41 T 31-10-2018 Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 Gene3D G3DSA:1.10.10.10 121 225 3.7E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 Pfam PF00072 Response regulator receiver domain 3 113 6.9E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.7E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4869 6c1b151816c261e4f6e1b16748439f60 227 SMART SM00862 146 220 2.0E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0793 a2e73f77e884d33ad28c3171ae1f5115 251 Pfam PF00975 Thioesterase domain 18 237 1.8E-60 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_0793 a2e73f77e884d33ad28c3171ae1f5115 251 SMART SM00824 Thioesterase 20 236 0.0066 T 31-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 Y89_0793 a2e73f77e884d33ad28c3171ae1f5115 251 Gene3D G3DSA:3.40.50.1820 1 243 2.3E-58 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0793 a2e73f77e884d33ad28c3171ae1f5115 251 SUPERFAMILY SSF53474 5 240 4.43E-46 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2752 668246e173fcdf56fbeb855b40c642cb 127 Pfam PF01597 Glycine cleavage H-protein 4 122 3.7E-37 T 31-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y89_2752 668246e173fcdf56fbeb855b40c642cb 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 38.365 T 31-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y89_2752 668246e173fcdf56fbeb855b40c642cb 127 Gene3D G3DSA:2.40.50.100 1 124 1.3E-40 T 31-10-2018 Y89_2752 668246e173fcdf56fbeb855b40c642cb 127 SUPERFAMILY SSF51230 2 122 8.11E-36 T 31-10-2018 IPR011053 Single hybrid motif Y89_2752 668246e173fcdf56fbeb855b40c642cb 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 123 8.5E-42 T 31-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Y89_5374 2d844661287b9f98def46a9d20975916 186 ProSitePatterns PS01071 grpE protein signature. 128 171 - T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 Gene3D G3DSA:2.30.22.10 118 173 1.0E-24 T 31-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 Pfam PF01025 GrpE 13 173 9.0E-52 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 Gene3D G3DSA:3.90.20.20 15 116 1.2E-28 T 31-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 125 140 2.8E-25 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 42 58 2.8E-25 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 70 85 2.8E-25 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 PRINTS PR00773 GrpE protein signature 152 171 2.8E-25 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 Hamap MF_01151 Protein GrpE [grpE]. 3 173 20.578 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 SUPERFAMILY SSF51064 118 174 4.97E-19 T 31-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Y89_5374 2d844661287b9f98def46a9d20975916 186 SUPERFAMILY SSF58014 20 115 1.16E-26 T 31-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Y89_3012 bd57127825c5f549c8fab7dfe8a98457 577 Pfam PF00890 FAD binding domain 14 549 5.5E-116 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3012 bd57127825c5f549c8fab7dfe8a98457 577 SUPERFAMILY SSF56425 324 502 1.05E-34 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3012 bd57127825c5f549c8fab7dfe8a98457 577 SUPERFAMILY SSF51905 7 567 1.98E-44 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 SUPERFAMILY SSF55486 209 457 2.01E-78 T 31-10-2018 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Gene3D G3DSA:2.60.40.1730 16 200 7.8E-72 T 31-10-2018 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Gene3D G3DSA:1.25.50.10 556 885 2.9E-126 T 31-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Gene3D G3DSA:1.10.1740.60 202 285 2.4E-42 T 31-10-2018 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Gene3D G3DSA:1.10.390.10 286 449 4.1E-67 T 31-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Gene3D G3DSA:2.60.40.1840 450 555 3.7E-36 T 31-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Pfam PF01433 Peptidase family M1 domain 214 445 1.2E-60 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 2.4E-10 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 2.4E-10 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 132 147 2.4E-10 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 2.4E-10 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 2.4E-10 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 884 0.0 T 31-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 559 885 3.3E-123 T 31-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 450 554 1.0E-30 T 31-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Y89_1936 1a43303e2d1910f2204e124435dabb9a 885 SUPERFAMILY SSF63737 4 199 2.22E-42 T 31-10-2018 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 149 276 4.4E-49 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 Gene3D G3DSA:3.30.1400.10 146 284 6.8E-55 T 31-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 279 23.775 T 31-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 150 277 7.0E-70 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 SUPERFAMILY SSF64383 147 283 2.75E-47 T 31-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 SMART SM00771 147 277 7.5E-71 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Y89_3810 fff8a43449bceb4e21918d0450591efe 289 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 5 277 2.5E-106 T 31-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 Y89_0895 1b3c4d9eaeed71ec6efce6ce4568a226 267 Gene3D G3DSA:3.90.850.10 1 267 5.2E-81 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0895 1b3c4d9eaeed71ec6efce6ce4568a226 267 SUPERFAMILY SSF56529 3 267 6.28E-78 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0895 1b3c4d9eaeed71ec6efce6ce4568a226 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 103 265 1.9E-7 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_0895 1b3c4d9eaeed71ec6efce6ce4568a226 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 3.1E-140 T 31-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 Y89_3479 d21f97915da6cd5c0cbcea0885d4b12f 389 SUPERFAMILY SSF103473 5 384 8.63E-34 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3479 d21f97915da6cd5c0cbcea0885d4b12f 389 Pfam PF07690 Major Facilitator Superfamily 11 240 1.4E-9 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3479 d21f97915da6cd5c0cbcea0885d4b12f 389 Pfam PF07690 Major Facilitator Superfamily 252 380 8.1E-12 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3479 d21f97915da6cd5c0cbcea0885d4b12f 389 Gene3D G3DSA:1.20.1250.20 2 384 7.1E-28 T 31-10-2018 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 343 358 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 373 384 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 298 309 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 103 114 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 167 182 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 315 342 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00359 B-class P450 signature 364 373 2.0E-25 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 Pfam PF00067 Cytochrome P450 61 391 5.4E-33 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00385 P450 superfamily signature 263 280 6.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00385 P450 superfamily signature 298 309 6.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00385 P450 superfamily signature 373 384 6.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 PRINTS PR00385 P450 superfamily signature 364 373 6.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 366 375 - T 31-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 SUPERFAMILY SSF48264 25 423 4.71E-78 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2592 ab4501bdebc635f7f426fdbcfc3b8099 424 Gene3D G3DSA:1.10.630.10 4 424 1.4E-91 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_3667 1135fc4344efd93763cef75f069a8e40 443 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 1.5E-152 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_3667 1135fc4344efd93763cef75f069a8e40 443 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 441 5.5E-142 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 SUPERFAMILY SSF54373 465 543 5.89E-6 T 31-10-2018 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 258 651 6.9E-135 T 31-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 112 234 6.7E-45 T 31-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 SUPERFAMILY SSF51905 259 650 1.2E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 5 646 27.084 T 31-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Gene3D G3DSA:3.30.9.10 339 557 1.7E-141 T 31-10-2018 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 SUPERFAMILY SSF53335 9 204 1.77E-6 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Gene3D G3DSA:3.50.50.60 257 648 1.7E-141 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Pfam PF01266 FAD dependent oxidoreductase 259 622 8.3E-49 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1550 6df5092882e53a224a4543b5fff0c5fc 654 Gene3D G3DSA:3.40.50.150 7 241 2.8E-96 T 31-10-2018 Y89_0040 1d0db0760aea54d3d05f1a3a9deb1e49 121 Gene3D G3DSA:1.20.120.160 1 114 3.7E-15 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_0040 1d0db0760aea54d3d05f1a3a9deb1e49 121 Pfam PF01627 Hpt domain 24 99 4.2E-9 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_0040 1d0db0760aea54d3d05f1a3a9deb1e49 121 SUPERFAMILY SSF47226 9 111 1.19E-15 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_4161 17665b5952033ddb053bb6446723774e 274 SUPERFAMILY SSF52402 10 228 2.07E-56 T 31-10-2018 Y89_4161 17665b5952033ddb053bb6446723774e 274 PIRSF PIRSF004976 3 267 6.0E-71 T 31-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Y89_4161 17665b5952033ddb053bb6446723774e 274 Pfam PF01171 PP-loop family 34 197 7.0E-14 T 31-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Y89_4161 17665b5952033ddb053bb6446723774e 274 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 1 264 58.223 T 31-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 Y89_4161 17665b5952033ddb053bb6446723774e 274 Gene3D G3DSA:3.40.50.620 3 258 1.7E-45 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3676 95589ea6cd5599abf5c55e4c0655afec 491 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 65 489 1.8E-182 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_3676 95589ea6cd5599abf5c55e4c0655afec 491 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 17 489 5.3E-217 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 SUPERFAMILY SSF53756 4 355 8.38E-116 T 31-10-2018 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 355 36.828 T 31-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 350 1.2E-110 T 31-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 Gene3D G3DSA:3.40.50.2000 6 345 3.7E-131 T 31-10-2018 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 141 7.9E-41 T 31-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 339 9.9E-36 T 31-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Y89_4901 849e9663e3cf77b15f8bbbb7cd4a6151 357 Gene3D G3DSA:3.40.50.2000 162 339 3.7E-131 T 31-10-2018 Y89_4175 59bb7f814d400f2394dec1701116a9a7 200 Pfam PF13505 Outer membrane protein beta-barrel domain 9 200 1.4E-9 T 31-10-2018 IPR027385 Outer membrane protein beta-barrel Y89_4175 59bb7f814d400f2394dec1701116a9a7 200 TIGRFAM TIGR03304 OMP85_target: outer membrane insertion C-terminal signal 191 200 0.22 T 31-10-2018 IPR017690 Outer membrane insertion C-terminal signal, omp85 target Y89_4175 59bb7f814d400f2394dec1701116a9a7 200 Gene3D G3DSA:2.40.160.20 23 200 5.2E-55 T 31-10-2018 Y89_4175 59bb7f814d400f2394dec1701116a9a7 200 SUPERFAMILY SSF56925 45 200 1.86E-18 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Y89_5732 683aed772308683ef9137ac65621fa25 313 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 17 134 9.5E-44 T 31-10-2018 IPR008769 Poly granule associated Y89_5732 683aed772308683ef9137ac65621fa25 313 PRINTS PR01217 Proline rich extensin signature 192 208 7.3E-10 T 31-10-2018 Y89_5732 683aed772308683ef9137ac65621fa25 313 PRINTS PR01217 Proline rich extensin signature 214 231 7.3E-10 T 31-10-2018 Y89_5732 683aed772308683ef9137ac65621fa25 313 PRINTS PR01217 Proline rich extensin signature 165 186 7.3E-10 T 31-10-2018 Y89_5732 683aed772308683ef9137ac65621fa25 313 PRINTS PR01217 Proline rich extensin signature 145 157 7.3E-10 T 31-10-2018 Y89_5732 683aed772308683ef9137ac65621fa25 313 PRINTS PR01217 Proline rich extensin signature 240 265 7.3E-10 T 31-10-2018 Y89_5732 683aed772308683ef9137ac65621fa25 313 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 8 134 1.4E-45 T 31-10-2018 IPR008769 Poly granule associated Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 SUPERFAMILY SSF46894 145 207 2.21E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 1.6E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 1.6E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 1.6E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 SUPERFAMILY SSF52172 2 163 5.98E-32 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 Pfam PF00072 Response regulator receiver domain 4 113 1.0E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 SMART SM00448 2 114 2.2E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 Gene3D G3DSA:3.40.50.12740 3 207 8.6E-56 T 31-10-2018 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 9.3E-24 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 SMART SM00421 144 201 2.1E-23 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0041 b2eaa970451a2e99e40bef53d015cdf0 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 SUPERFAMILY SSF53383 1 397 1.75E-111 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 PRINTS PR00799 Aspartate aminotransferase signature 176 195 2.4E-34 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 PRINTS PR00799 Aspartate aminotransferase signature 274 299 2.4E-34 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 PRINTS PR00799 Aspartate aminotransferase signature 342 360 2.4E-34 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 PRINTS PR00799 Aspartate aminotransferase signature 207 219 2.4E-34 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 Pfam PF00155 Aminotransferase class I and II 29 393 2.0E-80 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 Gene3D G3DSA:3.40.640.10 62 301 4.3E-147 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4489 fb74bf5138c590927bf38c39b1a0cd01 399 Gene3D G3DSA:3.90.1150.10 7 393 4.3E-147 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0446 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 SMART SM00867 25 189 1.3E-71 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_0446 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Pfam PF04264 YceI-like domain 26 186 1.9E-41 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_0446 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Gene3D G3DSA:2.40.128.110 24 191 4.5E-57 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_0446 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 Hamap MF_00780 Protein YceI [yceI]. 2 191 45.339 T 31-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI Y89_0446 ba5f1c4cd95dfa38fd693b5e7baa69c0 191 SUPERFAMILY SSF101874 22 191 2.88E-56 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 367 7.4E-20 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Gene3D G3DSA:3.30.1360.120 1 121 1.1E-40 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 SUPERFAMILY SSF52540 73 373 1.01E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 286 304 5.2E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 5.2E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Gene3D G3DSA:3.40.50.300 217 383 1.3E-102 T 31-10-2018 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 455 3.7E-104 T 31-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Gene3D G3DSA:1.20.120.430 122 455 1.3E-102 T 31-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 SUPERFAMILY SSF116878 121 455 2.09E-50 T 31-10-2018 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Pfam PF12631 MnmE helical domain 123 452 1.5E-58 T 31-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Pfam PF01926 50S ribosome-binding GTPase 219 307 4.6E-24 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 455 32.846 T 31-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Y89_6307 c60416d9e44b3b8bc80223ddf3fe3336 455 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 120 1.2E-36 T 31-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 SUPERFAMILY SSF55486 199 494 2.38E-87 T 31-10-2018 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 419 435 5.8E-26 T 31-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 336 352 5.8E-26 T 31-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 357 368 5.8E-26 T 31-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 302 322 5.8E-26 T 31-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Gene3D G3DSA:3.10.450.40 115 197 4.8E-22 T 31-10-2018 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Gene3D G3DSA:3.10.170.10 198 349 5.9E-68 T 31-10-2018 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 348 492 1.3E-36 T 31-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 208 345 4.1E-34 T 31-10-2018 IPR013856 Peptidase M4 domain GO:0004222 Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Pfam PF03413 Peptidase propeptide and YPEB domain 123 192 1.7E-8 T 31-10-2018 IPR025711 PepSY domain Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Gene3D G3DSA:1.10.390.10 350 497 2.0E-50 T 31-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily Y89_1305 4eefb8ca328471fe5a03264238d50718 498 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 56 90 5.8E-6 T 31-10-2018 IPR011096 FTP domain Y89_5541 a64c2bd59709b7ebfb85e01d99faf519 276 Gene3D G3DSA:3.20.20.60 1 276 4.1E-86 T 31-10-2018 Y89_5541 a64c2bd59709b7ebfb85e01d99faf519 276 Pfam PF13714 Phosphoenolpyruvate phosphomutase 2 236 7.4E-44 T 31-10-2018 Y89_5541 a64c2bd59709b7ebfb85e01d99faf519 276 SUPERFAMILY SSF51621 1 272 1.44E-65 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_5541 a64c2bd59709b7ebfb85e01d99faf519 276 Hamap MF_01299 Oxaloacetate decarboxylase. 1 276 46.208 T 31-10-2018 IPR023687 Oxaloacetate decarboxylase, bacterial GO:0008948 KEGG: 00620+4.1.1.3 Y89_6376 622e07ec7bc4b596f786454736065b8e 481 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 105 111 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_6376 622e07ec7bc4b596f786454736065b8e 481 SUPERFAMILY SSF53335 18 178 1.66E-22 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_6376 622e07ec7bc4b596f786454736065b8e 481 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 42 56 6.6E-7 T 31-10-2018 Y89_6376 622e07ec7bc4b596f786454736065b8e 481 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 102 114 6.6E-7 T 31-10-2018 Y89_6376 622e07ec7bc4b596f786454736065b8e 481 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 131 155 6.6E-7 T 31-10-2018 Y89_6376 622e07ec7bc4b596f786454736065b8e 481 Gene3D G3DSA:3.40.50.150 23 214 1.5E-17 T 31-10-2018 Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 SUPERFAMILY SSF63411 255 450 3.67E-34 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 Gene3D G3DSA:3.30.830.10 249 445 9.7E-56 T 31-10-2018 Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 Pfam PF00675 Insulinase (Peptidase family M16) 41 179 7.0E-21 T 31-10-2018 IPR011765 Peptidase M16, N-terminal Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 Pfam PF05193 Peptidase M16 inactive domain 195 378 3.4E-28 T 31-10-2018 IPR007863 Peptidase M16, C-terminal Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 Gene3D G3DSA:3.30.830.10 24 248 3.3E-92 T 31-10-2018 Y89_0394 53c4d53e2aba2a9c78d38fb3409de816 456 SUPERFAMILY SSF63411 28 245 7.83E-61 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_4759 c919efc3bdbc4ebd1fc18979b837218d 238 Pfam PF13103 TonB C terminal 136 198 4.1E-5 T 31-10-2018 Y89_4759 c919efc3bdbc4ebd1fc18979b837218d 238 Gene3D G3DSA:3.30.1150.10 110 219 8.2E-6 T 31-10-2018 Y89_4759 c919efc3bdbc4ebd1fc18979b837218d 238 SUPERFAMILY SSF74653 126 210 3.14E-10 T 31-10-2018 Y89_4759 c919efc3bdbc4ebd1fc18979b837218d 238 Gene3D G3DSA:3.55.50.30 40 109 3.8E-20 T 31-10-2018 Y89_4759 c919efc3bdbc4ebd1fc18979b837218d 238 SMART SM00965 63 114 1.1E-10 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 Gene3D G3DSA:3.50.50.100 1 412 5.4E-112 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.9E-14 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 1.9E-14 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 1.9E-14 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 1.9E-14 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 SUPERFAMILY SSF51905 2 319 5.37E-29 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.8E-7 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.8E-7 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.8E-7 T 31-10-2018 Y89_5049 19910400c95e32f29ceda1ad238b4262 435 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 341 6.8E-60 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 PIRSF PIRSF000497 1 394 1.6E-167 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 31-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Gene3D G3DSA:3.30.300.10 6 234 2.3E-169 T 31-10-2018 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 SUPERFAMILY SSF55973 234 395 3.26E-67 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 4.0E-42 T 31-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Gene3D G3DSA:3.30.300.10 103 386 2.3E-169 T 31-10-2018 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 101 4.3E-40 T 31-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 367 1.5E-66 T 31-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 SUPERFAMILY SSF55973 112 233 8.24E-50 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 394 55.903 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 SUPERFAMILY SSF55973 6 110 2.2E-44 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 31-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 Gene3D G3DSA:3.30.300.10 12 271 2.3E-169 T 31-10-2018 Y89_0568 f9ad60a0e793620ac0e996a9eab5860a 396 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 392 9.0E-182 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Y89_1949 4b460720d4c06239c2b9d7bf11d10b55 326 Gene3D G3DSA:1.10.8.300 207 323 2.8E-37 T 31-10-2018 Y89_1949 4b460720d4c06239c2b9d7bf11d10b55 326 PIRSF PIRSF002849 1 326 1.6E-128 T 31-10-2018 Y89_1949 4b460720d4c06239c2b9d7bf11d10b55 326 Gene3D G3DSA:3.40.50.300 25 191 7.2E-45 T 31-10-2018 Y89_1949 4b460720d4c06239c2b9d7bf11d10b55 326 SUPERFAMILY SSF52540 10 298 2.66E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1949 4b460720d4c06239c2b9d7bf11d10b55 326 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 44 174 8.0E-64 T 31-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 Gene3D G3DSA:1.20.1530.20 4 391 2.2E-90 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 287 5.1E-85 T 31-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 SUPERFAMILY SSF51735 407 543 2.8E-30 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 Pfam PF02254 TrkA-N domain 409 520 8.1E-25 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 Gene3D G3DSA:3.40.50.720 406 567 3.7E-38 T 31-10-2018 Y89_4146 8022c0d8a5abebe9077d713fd2cfa0fc 613 Pfam PF00999 Sodium/hydrogen exchanger family 13 377 3.9E-70 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 SUPERFAMILY SSF109604 66 167 4.4E-5 T 31-10-2018 Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 492 614 3.7E-49 T 31-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 SUPERFAMILY SSF46785 491 615 1.39E-43 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 Gene3D G3DSA:2.40.10.200 509 610 9.4E-26 T 31-10-2018 Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 Gene3D G3DSA:1.10.10.10 493 563 9.4E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 Pfam PF07514 Putative helicase 26 338 1.0E-127 T 31-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 25 242 1.8E-89 T 31-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y89_6002 73c87f7c9f22cc70f3e0ce7227a25ae3 619 Gene3D G3DSA:1.10.3210.40 28 249 4.2E-40 T 31-10-2018 Y89_3393 193c8229fd61a7441b89da58149c38fa 207 Gene3D G3DSA:3.40.630.30 30 205 5.5E-41 T 31-10-2018 Y89_3393 193c8229fd61a7441b89da58149c38fa 207 Pfam PF13302 Acetyltransferase (GNAT) domain 35 179 7.7E-18 T 31-10-2018 IPR000182 GNAT domain Y89_3393 193c8229fd61a7441b89da58149c38fa 207 SUPERFAMILY SSF55729 30 202 1.14E-38 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3336 29a781ee5f37ab997aa4367d8d18e1fe 250 Gene3D G3DSA:1.20.910.10 3 249 1.9E-78 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_3336 29a781ee5f37ab997aa4367d8d18e1fe 250 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 250 142.529 T 31-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 Y89_3336 29a781ee5f37ab997aa4367d8d18e1fe 250 SUPERFAMILY SSF48613 2 248 9.34E-79 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_3336 29a781ee5f37ab997aa4367d8d18e1fe 250 Pfam PF03070 TENA/THI-4/PQQC family 14 222 1.7E-69 T 31-10-2018 IPR004305 Thiaminase-2/PQQC Y89_3336 29a781ee5f37ab997aa4367d8d18e1fe 250 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 6 241 3.4E-124 T 31-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 Y89_4518 ef28b8e15bbcac9649d162d22cf97a47 406 SUPERFAMILY SSF53756 7 378 1.62E-75 T 31-10-2018 Y89_4518 ef28b8e15bbcac9649d162d22cf97a47 406 Gene3D G3DSA:3.40.50.2000 182 361 1.8E-62 T 31-10-2018 Y89_4518 ef28b8e15bbcac9649d162d22cf97a47 406 Gene3D G3DSA:3.40.50.2000 9 181 1.8E-62 T 31-10-2018 Y89_4518 ef28b8e15bbcac9649d162d22cf97a47 406 Pfam PF13439 Glycosyltransferase Family 4 18 183 7.1E-28 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_4518 ef28b8e15bbcac9649d162d22cf97a47 406 Pfam PF13692 Glycosyl transferases group 1 208 343 1.0E-22 T 31-10-2018 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 Pfam PF03222 Tryptophan/tyrosine permease family 23 371 5.5E-35 T 31-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 Gene3D G3DSA:1.20.1740.10 13 406 2.0E-6 T 31-10-2018 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 341 360 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 284 303 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 97 117 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 320 338 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 25 48 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_3406 c9c29d373a72078f73955fc77cebf74b 410 PRINTS PR00166 Aromatic amino acid permease signature 52 71 1.4E-13 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_4327 f0c8272de8b98c8875239cf0bc787f1d 428 Gene3D G3DSA:3.30.9.10 123 344 1.3E-69 T 31-10-2018 Y89_4327 f0c8272de8b98c8875239cf0bc787f1d 428 Gene3D G3DSA:3.50.50.60 30 382 1.3E-69 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4327 f0c8272de8b98c8875239cf0bc787f1d 428 SUPERFAMILY SSF51905 29 399 1.75E-38 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4327 f0c8272de8b98c8875239cf0bc787f1d 428 Pfam PF01266 FAD dependent oxidoreductase 30 381 2.2E-50 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 Gene3D G3DSA:2.40.40.20 274 338 8.2E-38 T 31-10-2018 Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 TIGRFAM TIGR03245 arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit 3 338 7.1E-165 T 31-10-2018 IPR017651 Arginine/ornithine succinyltransferase, alpha subunit KEGG: 00330+2.3.1.109 Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 SUPERFAMILY SSF55729 1 337 1.85E-120 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 1.0E-132 T 31-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 Gene3D G3DSA:3.40.630.30 1 273 1.2E-113 T 31-10-2018 Y89_4463 02e0b09d7dc26721f386b9129f22df9b 338 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 8.0E-127 T 31-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 Y89_1900 0a4a8aeba0495ead7bf30d0017f2d462 253 Gene3D G3DSA:3.40.50.150 23 246 5.7E-57 T 31-10-2018 Y89_1900 0a4a8aeba0495ead7bf30d0017f2d462 253 SUPERFAMILY SSF53335 9 240 2.01E-47 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1900 0a4a8aeba0495ead7bf30d0017f2d462 253 Pfam PF08241 Methyltransferase domain 47 143 1.4E-25 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 Hamap MF_00970 Ribonuclease E [rne]. 16 1057 39.521 T 31-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 Gene3D G3DSA:2.40.50.140 46 138 1.1E-32 T 31-10-2018 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 Pfam PF10150 Ribonuclease E/G family 134 403 1.0E-95 T 31-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 Gene3D G3DSA:3.40.1260.20 414 524 3.3E-36 T 31-10-2018 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 SMART SM00316 52 132 7.7E-13 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 Pfam PF00575 S1 RNA binding domain 51 131 6.4E-15 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 SUPERFAMILY SSF50249 55 138 6.68E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2044 5829c38b67a3c838ede8d9e1120cf681 1069 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 28 437 1.9E-167 T 31-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Y89_4990 9c571862d631afc7e61bff30207f6269 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 9.2E-31 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4990 9c571862d631afc7e61bff30207f6269 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 70 2.1E-13 T 31-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Y89_4990 9c571862d631afc7e61bff30207f6269 303 SUPERFAMILY SSF161098 94 281 5.63E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4990 9c571862d631afc7e61bff30207f6269 303 Gene3D G3DSA:1.10.3720.10 89 296 5.0E-23 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0614 18a79b25c7aa5f31da2a146dff89cbb8 654 Gene3D G3DSA:4.10.1070.10 522 647 8.2E-27 T 31-10-2018 Y89_0614 18a79b25c7aa5f31da2a146dff89cbb8 654 Gene3D G3DSA:3.90.1340.10 464 653 8.2E-27 T 31-10-2018 IPR037053 Phage tail collar domain superfamily Y89_0614 18a79b25c7aa5f31da2a146dff89cbb8 654 SUPERFAMILY SSF88874 461 654 4.71E-36 T 31-10-2018 Y89_0614 18a79b25c7aa5f31da2a146dff89cbb8 654 Pfam PF07484 Phage Tail Collar Domain 468 525 7.1E-21 T 31-10-2018 IPR011083 Phage tail collar domain Y89_0614 18a79b25c7aa5f31da2a146dff89cbb8 654 Pfam PF12571 Phage tail-collar fibre protein 3 157 2.5E-37 T 31-10-2018 IPR022225 Phage tail fibre protein Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 SMART SM00304 192 244 6.2E-14 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Gene3D G3DSA:3.30.565.10 477 610 7.2E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Gene3D G3DSA:1.20.1480.50 161 251 7.4E-11 T 31-10-2018 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 SMART SM00387 517 611 1.8E-9 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 518 607 5.5E-8 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Pfam PF07730 Histidine kinase 411 477 1.8E-17 T 31-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 62 85 8.9E-7 T 31-10-2018 IPR029095 NarX-like, N-terminal Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 SUPERFAMILY SSF158472 193 242 1.06E-9 T 31-10-2018 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 SUPERFAMILY SSF55874 503 608 6.55E-15 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Pfam PF00672 HAMP domain 194 240 7.9E-13 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 Gene3D G3DSA:1.20.120.960 62 160 1.0E-7 T 31-10-2018 Y89_1148 28b27be6ac659dae7e0e814cdfbb5357 622 PIRSF PIRSF003167 17 622 8.5E-198 T 31-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 Y89_4051 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 4 149 42.239 T 31-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 Y89_4051 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 PIRSF PIRSF006173 1 149 7.3E-67 T 31-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 Y89_4051 ffbe6f0d3e7628b7c1a7161d98d19ff8 149 Pfam PF03692 Putative zinc- or iron-chelating domain 26 93 1.5E-9 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 8.7E-77 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 31-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 SUPERFAMILY SSF51905 2 313 9.36E-56 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.5E-38 T 31-10-2018 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.5E-38 T 31-10-2018 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.5E-38 T 31-10-2018 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.5E-38 T 31-10-2018 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.5E-38 T 31-10-2018 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 Gene3D G3DSA:3.50.50.60 118 244 6.2E-123 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 3.5E-120 T 31-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 Gene3D G3DSA:3.50.50.60 9 312 6.2E-123 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2472 99083a68e91c78d221ecefe8eb6a971b 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 7.0E-49 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 SUPERFAMILY SSF69742 1 156 6.02E-49 T 31-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 PIRSF PIRSF000445 1 422 6.8E-158 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 4.2E-50 T 31-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 319 415 2.1E-23 T 31-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Gene3D G3DSA:3.30.460.30 2 156 4.8E-57 T 31-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Gene3D G3DSA:3.40.50.720 160 311 4.3E-45 T 31-10-2018 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.257 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 31-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 SUPERFAMILY SSF69075 315 416 3.14E-27 T 31-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 1.2E-50 T 31-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 8.3E-142 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Y89_5277 3b49a0e32ffdf0a3363c8b503911ceb3 422 SUPERFAMILY SSF51735 160 313 3.38E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 PRINTS PR01837 MgtC/SapB protein signature 84 108 3.9E-41 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 PRINTS PR01837 MgtC/SapB protein signature 12 31 3.9E-41 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 PRINTS PR01837 MgtC/SapB protein signature 57 79 3.9E-41 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 PRINTS PR01837 MgtC/SapB protein signature 31 49 3.9E-41 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 Gene3D G3DSA:3.30.70.260 138 230 4.1E-17 T 31-10-2018 Y89_2632 c73adbeb0510151d9fff35460dbbc8b9 230 Pfam PF02308 MgtC family 9 129 1.0E-32 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5852 ac14cd080f013b60b76030f28483892f 462 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_5852 ac14cd080f013b60b76030f28483892f 462 SMART SM00382 172 315 1.9E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5852 ac14cd080f013b60b76030f28483892f 462 Pfam PF00072 Response regulator receiver domain 13 122 8.0E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5852 ac14cd080f013b60b76030f28483892f 462 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_5852 ac14cd080f013b60b76030f28483892f 462 Gene3D G3DSA:1.10.8.60 323 384 1.2E-18 T 31-10-2018 Y89_5852 ac14cd080f013b60b76030f28483892f 462 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_5852 ac14cd080f013b60b76030f28483892f 462 Gene3D G3DSA:1.10.10.60 396 450 1.3E-9 T 31-10-2018 Y89_5852 ac14cd080f013b60b76030f28483892f 462 SUPERFAMILY SSF52540 152 381 6.84E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5852 ac14cd080f013b60b76030f28483892f 462 Gene3D G3DSA:3.40.50.300 141 322 2.4E-61 T 31-10-2018 Y89_5852 ac14cd080f013b60b76030f28483892f 462 Pfam PF00158 Sigma-54 interaction domain 152 318 5.9E-67 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5852 ac14cd080f013b60b76030f28483892f 462 Gene3D G3DSA:3.40.50.2300 7 136 1.8E-38 T 31-10-2018 Y89_5852 ac14cd080f013b60b76030f28483892f 462 SUPERFAMILY SSF52172 12 197 1.08E-42 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5852 ac14cd080f013b60b76030f28483892f 462 Pfam PF02954 Bacterial regulatory protein, Fis family 406 446 9.0E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5852 ac14cd080f013b60b76030f28483892f 462 SMART SM00448 11 122 4.4E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5852 ac14cd080f013b60b76030f28483892f 462 SUPERFAMILY SSF46689 397 448 1.79E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5852 ac14cd080f013b60b76030f28483892f 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 449 5.8E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5852 ac14cd080f013b60b76030f28483892f 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 412 429 5.8E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4374 8dc0993ccf6bc04cedc3ec57f19fac3a 182 Pfam PF13462 Thioredoxin 11 164 2.1E-17 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_4374 8dc0993ccf6bc04cedc3ec57f19fac3a 182 SUPERFAMILY SSF52833 11 176 3.83E-29 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4374 8dc0993ccf6bc04cedc3ec57f19fac3a 182 Gene3D G3DSA:3.40.30.10 8 182 5.3E-46 T 31-10-2018 Y89_0045 fff95ed1e230e58aefce34036f943fa9 71 Gene3D G3DSA:3.30.1660.10 3 71 1.8E-34 T 31-10-2018 IPR025543 Dodecin-like Y89_0045 fff95ed1e230e58aefce34036f943fa9 71 SUPERFAMILY SSF89807 6 69 1.44E-27 T 31-10-2018 IPR036694 Dodecin-like superfamily Y89_0045 fff95ed1e230e58aefce34036f943fa9 71 Pfam PF07311 Dodecin 6 68 3.1E-31 T 31-10-2018 IPR009923 Dodecin Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 340 361 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 3.2E-50 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 1 464 73.11 T 31-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PIRSF PIRSF000350 2 459 6.4E-68 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.9E-30 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.9E-30 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 5.9E-30 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.9E-30 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.9E-30 T 31-10-2018 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.30.390.30 343 462 5.8E-31 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 455 5.0E-27 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.50.50.60 157 275 5.2E-95 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 325 1.2E-62 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 SUPERFAMILY SSF55424 343 461 5.84E-29 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 Gene3D G3DSA:3.50.50.60 6 332 5.2E-95 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2028 1f2b87d6dff7464b8d6387a7da584fe2 464 SUPERFAMILY SSF51905 4 318 3.65E-56 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1520 3ff9d1242dba712eaa3ef5fb8d02416a 194 PIRSF PIRSF006102 1 193 2.1E-60 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_1520 3ff9d1242dba712eaa3ef5fb8d02416a 194 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 191 4.1E-61 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_1520 3ff9d1242dba712eaa3ef5fb8d02416a 194 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 192 1.9E-82 T 31-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Y89_1520 3ff9d1242dba712eaa3ef5fb8d02416a 194 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 192 24.557 T 31-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Y89_4785 6efbf32dd404a16b1287450275bde384 294 Gene3D G3DSA:1.20.81.30 109 230 8.1E-6 T 31-10-2018 Y89_4785 6efbf32dd404a16b1287450275bde384 294 Pfam PF00482 Type II secretion system (T2SS), protein F 127 253 4.1E-16 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_2919 bcc72f2901f7a5796c9c93e537d41c2c 789 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 772 789 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_2919 bcc72f2901f7a5796c9c93e537d41c2c 789 Gene3D G3DSA:2.40.170.20 64 789 3.0E-143 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2919 bcc72f2901f7a5796c9c93e537d41c2c 789 SUPERFAMILY SSF56935 52 789 6.96E-116 T 31-10-2018 Y89_2919 bcc72f2901f7a5796c9c93e537d41c2c 789 Pfam PF00593 TonB dependent receptor 311 787 3.6E-33 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2919 bcc72f2901f7a5796c9c93e537d41c2c 789 Pfam PF07715 TonB-dependent Receptor Plug Domain 74 180 3.5E-15 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 35 215 8.9E-64 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 Gene3D G3DSA:2.30.210.20 1 60 5.0E-26 T 31-10-2018 Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 226 99.943 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 SUPERFAMILY SSF55729 2 220 1.69E-93 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 203 1.7E-75 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Y89_2471 fa41676f0431150ea1b17388bc2466f4 226 Gene3D G3DSA:3.40.630.70 61 223 1.4E-67 T 31-10-2018 Y89_1468 d299920d98db37a993eb544199582850 464 SUPERFAMILY SSF51735 1 195 2.22E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1468 d299920d98db37a993eb544199582850 464 Gene3D G3DSA:1.20.5.100 203 234 1.6E-17 T 31-10-2018 Y89_1468 d299920d98db37a993eb544199582850 464 SUPERFAMILY SSF48179 204 300 1.29E-32 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1468 d299920d98db37a993eb544199582850 464 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 1.8E-31 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 SUPERFAMILY SSF52413 311 435 6.67E-41 T 31-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 PIRSF PIRSF500134 1 442 7.0E-182 T 31-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Y89_1468 d299920d98db37a993eb544199582850 464 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 7.1E-60 T 31-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 1.1E-134 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 PIRSF PIRSF000124 1 439 8.9E-143 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 SMART SM00984 320 424 2.3E-51 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 1.5E-36 T 31-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_1468 d299920d98db37a993eb544199582850 464 Gene3D G3DSA:3.40.50.720 235 453 5.0E-78 T 31-10-2018 Y89_1468 d299920d98db37a993eb544199582850 464 Gene3D G3DSA:3.40.50.720 1 202 3.0E-74 T 31-10-2018 Y89_2840 3d935dc2b185bd27020aa4bb085e1f43 366 Pfam PF06812 ImpA, N-terminal, type VI secretion system 16 138 1.4E-37 T 31-10-2018 IPR010657 ImpA, N-terminal Y89_2840 3d935dc2b185bd27020aa4bb085e1f43 366 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 11 363 4.1E-125 T 31-10-2018 IPR017740 Type VI secretion system-associated, ImpA Y89_1165 6001a6bf5e85938daa038c837942814a 215 SUPERFAMILY SSF53474 9 215 1.21E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1165 6001a6bf5e85938daa038c837942814a 215 Pfam PF02230 Phospholipase/Carboxylesterase 12 213 1.9E-45 T 31-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 Y89_1165 6001a6bf5e85938daa038c837942814a 215 Gene3D G3DSA:3.40.50.1820 1 215 5.6E-77 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 1.8E-65 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 134 153 1.8E-65 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 1.8E-65 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 302 328 1.8E-65 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 189 209 1.8E-65 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.30.420.40 156 319 7.4E-131 T 31-10-2018 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.30.420.40 14 329 7.4E-131 T 31-10-2018 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 SUPERFAMILY SSF53067 9 150 3.02E-38 T 31-10-2018 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 Gene3D G3DSA:3.90.640.10 188 261 7.4E-131 T 31-10-2018 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 SUPERFAMILY SSF53067 151 340 8.76E-48 T 31-10-2018 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 Pfam PF06723 MreB/Mbl protein 11 337 3.6E-148 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_4971 70fa0299c36d1ccf7815142bcbe5bdab 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 338 9.2E-161 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Y89_5947 1d4b9239625b773fcb65f7b1ae1251ce 376 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 31 358 5.2E-98 T 31-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX Y89_4919 58e0e807954272da9903afe6d817e2ac 403 PIRSF PIRSF038885 1 403 6.7E-161 T 31-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 Y89_4919 58e0e807954272da9903afe6d817e2ac 403 SUPERFAMILY SSF81648 281 396 5.01E-33 T 31-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y89_4919 58e0e807954272da9903afe6d817e2ac 403 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 278 379 1.3E-43 T 31-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y89_4919 58e0e807954272da9903afe6d817e2ac 403 Gene3D G3DSA:1.20.810.10 1 403 1.7E-156 T 31-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Y89_4919 58e0e807954272da9903afe6d817e2ac 403 Pfam PF00033 Cytochrome b/b6/petB 24 211 8.7E-68 T 31-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Y89_4919 58e0e807954272da9903afe6d817e2ac 403 SUPERFAMILY SSF81342 13 279 1.27E-96 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_4965 e4e20bc3f94d34cf4b0c5f47832ff94e 282 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 31-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Y89_4965 e4e20bc3f94d34cf4b0c5f47832ff94e 282 SUPERFAMILY SSF56317 1 268 3.27E-75 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_4965 e4e20bc3f94d34cf4b0c5f47832ff94e 282 Gene3D G3DSA:3.60.110.10 1 271 7.5E-88 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_4965 e4e20bc3f94d34cf4b0c5f47832ff94e 282 Pfam PF00795 Carbon-nitrogen hydrolase 3 254 1.0E-49 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 Pfam PF01782 RimM N-terminal domain 14 95 2.2E-26 T 31-10-2018 IPR002676 RimM, N-terminal GO:0006364 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 178 24.458 T 31-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 SUPERFAMILY SSF50346 104 178 2.55E-21 T 31-10-2018 IPR011033 PRC-barrel-like superfamily Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 Gene3D G3DSA:2.30.30.240 104 178 9.7E-32 T 31-10-2018 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 SUPERFAMILY SSF50447 10 97 1.8E-25 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 Gene3D G3DSA:2.40.30.60 10 98 3.0E-35 T 31-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 11 177 2.1E-53 T 31-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Y89_1283 f91c5d8d5796f8aaab9b196ac9d32b77 178 Pfam PF05239 PRC-barrel domain 101 173 3.3E-7 T 31-10-2018 IPR027275 PRC-barrel domain Y89_5075 be612a01a1789e5054f6db4459f2cf17 242 Pfam PF08900 Domain of unknown function (DUF1845) 8 222 1.9E-79 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_5075 be612a01a1789e5054f6db4459f2cf17 242 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 10 225 5.5E-93 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 448 2.0E-199 T 31-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 10 34 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 121 138 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 171 195 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 80 108 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 210 238 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 319 342 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 PRINTS PR01874 DNA repair protein radA signature 245 271 2.8E-94 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 SUPERFAMILY SSF52540 66 286 2.01E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 SUPERFAMILY SSF54211 252 452 2.73E-40 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 Gene3D G3DSA:3.30.230.10 325 453 2.4E-17 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 43.918 T 31-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 Pfam PF13541 Subunit ChlI of Mg-chelatase 364 427 5.5E-7 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 SMART SM00382 88 241 2.5E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 Pfam PF13481 AAA domain 76 219 1.2E-13 T 31-10-2018 Y89_5217 c98abf70e7bbddeb3967dd78a281e90c 453 Gene3D G3DSA:3.40.50.300 63 276 2.7E-42 T 31-10-2018 Y89_5019 402bd825a2ae325b114f9f9e45e27d06 124 Gene3D G3DSA:3.90.580.10 2 68 3.3E-6 T 31-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Y89_5019 402bd825a2ae325b114f9f9e45e27d06 124 SUPERFAMILY SSF57783 3 63 1.31E-6 T 31-10-2018 Y89_0965 ba3dc4c656936ef0387a7608824ec1eb 220 SUPERFAMILY SSF53335 18 174 1.33E-25 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0965 ba3dc4c656936ef0387a7608824ec1eb 220 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 81 153 8.5E-16 T 31-10-2018 Y89_0965 ba3dc4c656936ef0387a7608824ec1eb 220 Gene3D G3DSA:3.40.50.150 38 195 2.2E-27 T 31-10-2018 Y89_4574 1c843ff4016305ed78373445a4965573 305 Gene3D G3DSA:3.40.190.10 163 260 6.4E-39 T 31-10-2018 Y89_4574 1c843ff4016305ed78373445a4965573 305 SUPERFAMILY SSF46785 3 86 4.36E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4574 1c843ff4016305ed78373445a4965573 305 SUPERFAMILY SSF53850 83 293 3.26E-31 T 31-10-2018 Y89_4574 1c843ff4016305ed78373445a4965573 305 Gene3D G3DSA:1.10.10.10 5 92 7.3E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4574 1c843ff4016305ed78373445a4965573 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.5E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4574 1c843ff4016305ed78373445a4965573 305 Pfam PF03466 LysR substrate binding domain 91 289 8.7E-27 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4574 1c843ff4016305ed78373445a4965573 305 Gene3D G3DSA:3.40.190.10 102 288 6.4E-39 T 31-10-2018 Y89_4574 1c843ff4016305ed78373445a4965573 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4574 1c843ff4016305ed78373445a4965573 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4574 1c843ff4016305ed78373445a4965573 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.4E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6389 0a973f689f4b8023265a906244befaba 112 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 29 104 1.5E-28 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_6389 0a973f689f4b8023265a906244befaba 112 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 13 105 4.2E-37 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_5119 0a973f689f4b8023265a906244befaba 112 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 29 104 1.5E-28 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_5119 0a973f689f4b8023265a906244befaba 112 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 13 105 4.2E-37 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_5967 15c40745818dbc6a3121094a2d217019 276 SUPERFAMILY SSF54506 3 276 3.77E-52 T 31-10-2018 Y89_5967 15c40745818dbc6a3121094a2d217019 276 Gene3D G3DSA:3.10.310.10 5 272 1.2E-102 T 31-10-2018 Y89_5967 15c40745818dbc6a3121094a2d217019 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 31-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y89_5967 15c40745818dbc6a3121094a2d217019 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.7E-90 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y89_5967 15c40745818dbc6a3121094a2d217019 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 40.365 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y89_5967 15c40745818dbc6a3121094a2d217019 276 Gene3D G3DSA:3.10.310.10 117 263 1.2E-102 T 31-10-2018 Y89_5967 15c40745818dbc6a3121094a2d217019 276 Pfam PF01678 Diaminopimelate epimerase 5 125 3.7E-33 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y89_5967 15c40745818dbc6a3121094a2d217019 276 Pfam PF01678 Diaminopimelate epimerase 154 269 5.3E-27 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 Pfam PF01614 Bacterial transcriptional regulator 162 278 1.4E-10 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 SMART SM00346 44 134 2.6E-21 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 SUPERFAMILY SSF55781 111 286 7.19E-37 T 31-10-2018 Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 Gene3D G3DSA:3.30.450.40 117 285 1.3E-31 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 SUPERFAMILY SSF46785 44 118 6.83E-13 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 Pfam PF09339 IclR helix-turn-helix domain 46 95 3.0E-16 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_3705 873c2a3d8963f08df1f8c6b40dda81ba 288 Gene3D G3DSA:1.10.10.10 30 112 1.2E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 930 0.0 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 885 947 1.6E-19 T 31-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 SUPERFAMILY SSF46589 883 947 9.94E-18 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:3.40.50.620 2 202 5.0E-64 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 SUPERFAMILY SSF52374 1 638 2.5E-137 T 31-10-2018 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 SUPERFAMILY SSF47323 639 898 1.7E-70 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:3.90.740.10 241 311 1.9E-8 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 948 16.171 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:3.40.50.620 328 552 5.7E-75 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Pfam PF08264 Anticodon-binding domain of tRNA 671 823 1.3E-43 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:1.10.730.10 574 816 1.2E-73 T 31-10-2018 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 PRINTS PR00986 Valyl-tRNA synthetase signature 233 250 1.1E-35 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 PRINTS PR00986 Valyl-tRNA synthetase signature 466 487 1.1E-35 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 PRINTS PR00986 Valyl-tRNA synthetase signature 366 379 1.1E-35 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 PRINTS PR00986 Valyl-tRNA synthetase signature 497 515 1.1E-35 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 PRINTS PR00986 Valyl-tRNA synthetase signature 33 44 1.1E-35 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:1.10.287.380 876 948 9.5E-20 T 31-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 628 1.2E-219 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 SUPERFAMILY SSF50677 188 362 2.35E-59 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_1192 04d42b5eae8bfbf6ff76a0e21d33ce42 950 Gene3D G3DSA:3.90.740.10 203 240 2.6E-5 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 SUPERFAMILY SSF103088 149 258 4.32E-36 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 Pfam PF00691 OmpA family 157 252 5.3E-23 T 31-10-2018 IPR006665 OmpA-like domain Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 Gene3D G3DSA:3.30.1330.60 121 266 2.5E-41 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 Pfam PF14346 Domain of unknown function (DUF4398) 15 115 2.2E-20 T 31-10-2018 IPR025511 Domain of unknown function DUF4398 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 241 261 1.1E-5 T 31-10-2018 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 221 240 1.1E-5 T 31-10-2018 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 203 220 1.1E-5 T 31-10-2018 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 203 219 6.3E-12 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 158 180 6.3E-12 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_2122 93db9fa1107f5fa95e0eaa84281386dc 269 PRINTS PR01021 OMPA domain signature 188 203 6.3E-12 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SMART SM00388 503 566 1.2E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SMART SM00387 610 721 3.4E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SUPERFAMILY SSF55781 311 493 4.51E-42 T 31-10-2018 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Pfam PF08446 PAS fold 12 76 5.3E-10 T 31-10-2018 IPR013654 PAS fold-2 GO:0006355 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Gene3D G3DSA:3.30.565.10 571 719 1.3E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Pfam PF00360 Phytochrome region 324 496 1.6E-47 T 31-10-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SUPERFAMILY SSF55785 6 115 1.1E-24 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Pfam PF01590 GAF domain 141 289 9.6E-18 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Gene3D G3DSA:3.30.450.40 9 469 3.2E-195 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SUPERFAMILY SSF55781 128 307 2.55E-60 T 31-10-2018 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SUPERFAMILY SSF47384 494 566 5.49E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 611 716 7.3E-13 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 PRINTS PR01033 Phytochrome signature 456 474 2.1E-22 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 PRINTS PR01033 Phytochrome signature 241 262 2.1E-22 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 PRINTS PR01033 Phytochrome signature 339 359 2.1E-22 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 PRINTS PR01033 Phytochrome signature 422 441 2.1E-22 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 PRINTS PR01033 Phytochrome signature 154 173 2.1E-22 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SMART SM00065 139 313 6.5E-10 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Pfam PF00512 His Kinase A (phospho-acceptor) domain 503 566 1.3E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 SUPERFAMILY SSF55874 556 721 1.83E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Gene3D G3DSA:1.10.287.130 494 567 3.1E-14 T 31-10-2018 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Gene3D G3DSA:3.30.450.270 309 486 3.2E-195 T 31-10-2018 Y89_0905 4c7eda663e66ebdbe574613b81e4ddc0 728 Gene3D G3DSA:3.30.450.20 19 242 3.2E-195 T 31-10-2018 Y89_1144 2891068abcb2a1361b39c59dc2ba74b5 249 SUPERFAMILY SSF53335 3 171 1.32E-29 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1144 2891068abcb2a1361b39c59dc2ba74b5 249 Gene3D G3DSA:3.40.50.150 18 243 2.6E-77 T 31-10-2018 Y89_1144 2891068abcb2a1361b39c59dc2ba74b5 249 Gene3D G3DSA:1.10.10.2560 134 233 2.6E-77 T 31-10-2018 Y89_1144 2891068abcb2a1361b39c59dc2ba74b5 249 Pfam PF08241 Methyltransferase domain 41 128 1.5E-16 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_3647 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:1.10.340.30 128 243 1.2E-35 T 31-10-2018 Y89_3647 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:3.30.310.20 9 126 7.5E-30 T 31-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily Y89_3647 b86d19132f860ac4158314496ce9000c 297 SUPERFAMILY SSF48150 117 293 1.47E-45 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y89_3647 b86d19132f860ac4158314496ce9000c 297 SUPERFAMILY SSF55945 9 107 1.88E-27 T 31-10-2018 Y89_3647 b86d19132f860ac4158314496ce9000c 297 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 132 259 5.0E-8 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_3647 b86d19132f860ac4158314496ce9000c 297 Gene3D G3DSA:1.10.1670.10 245 295 2.8E-11 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y89_3647 b86d19132f860ac4158314496ce9000c 297 SMART SM01009 9 126 8.4E-49 T 31-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Y89_3647 b86d19132f860ac4158314496ce9000c 297 SMART SM00478 136 294 3.6E-15 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_3647 b86d19132f860ac4158314496ce9000c 297 Pfam PF06029 AlkA N-terminal domain 9 126 9.0E-32 T 31-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Y89_2196 66e3dc94bcb01564c04ecadf4eb2e46f 163 SUPERFAMILY SSF46785 15 155 2.02E-29 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2196 66e3dc94bcb01564c04ecadf4eb2e46f 163 Gene3D G3DSA:1.10.10.10 12 157 3.4E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2196 66e3dc94bcb01564c04ecadf4eb2e46f 163 Pfam PF01047 MarR family 47 110 3.5E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2196 66e3dc94bcb01564c04ecadf4eb2e46f 163 SMART SM00347 40 143 2.9E-14 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5593 c18c3a0df64f0921d6af0e36e8c16d37 195 Gene3D G3DSA:3.40.50.450 1 194 2.8E-78 T 31-10-2018 Y89_5593 c18c3a0df64f0921d6af0e36e8c16d37 195 Pfam PF03641 Possible lysine decarboxylase 48 177 8.9E-42 T 31-10-2018 IPR031100 LOG family Y89_5593 c18c3a0df64f0921d6af0e36e8c16d37 195 SUPERFAMILY SSF102405 2 180 1.68E-63 T 31-10-2018 Y89_5593 c18c3a0df64f0921d6af0e36e8c16d37 195 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 5 178 3.0E-63 T 31-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 Gene3D G3DSA:3.40.50.880 1 204 8.5E-66 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 Pfam PF00117 Glutamine amidotransferase class-I 4 201 8.8E-20 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 203 5.3E-64 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 PIRSF PIRSF000495 1 204 2.6E-65 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 SUPERFAMILY SSF52317 2 203 3.21E-51 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1870 00441b4a727f0aa4f38511afd6063d7a 204 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 204 33.18 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 Gene3D G3DSA:3.20.20.140 61 359 8.3E-164 T 31-10-2018 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 SUPERFAMILY SSF51556 60 360 1.08E-86 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 SUPERFAMILY SSF51338 1 399 1.71E-28 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 Gene3D G3DSA:2.30.40.10 8 393 8.3E-164 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 Pfam PF01979 Amidohydrolase family 58 376 6.9E-21 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 42.832 T 31-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_5763 dd1c168fc1d4d5caf6d456655e4b6f8d 402 TIGRFAM TIGR01224 hutI: imidazolonepropionase 22 394 2.3E-147 T 31-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Gene3D G3DSA:1.10.760.10 195 287 1.5E-76 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 SUPERFAMILY SSF46626 55 219 2.47E-32 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 140 214 5.6E-14 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 229 307 2.8E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Gene3D G3DSA:1.20.58.1490 1 94 1.7E-37 T 31-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 SUPERFAMILY SSF46626 225 313 1.69E-21 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Gene3D G3DSA:1.10.760.10 116 310 1.5E-76 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 4.4E-23 T 31-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 33 314 1.1E-80 T 31-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 PIRSF PIRSF000006 1 314 2.4E-106 T 31-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 PRINTS PR00605 Class IC cytochrome C signature 192 214 2.8E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_3786 f6fca4d1ebe70dff01776022797e8420 318 PRINTS PR00605 Class IC cytochrome C signature 150 161 2.8E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_5396 d90141f1dc2bcda5dd5b9f70d88a9522 296 Pfam PF00892 EamA-like transporter family 15 141 2.2E-16 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5396 d90141f1dc2bcda5dd5b9f70d88a9522 296 Pfam PF00892 EamA-like transporter family 152 284 4.5E-18 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5396 d90141f1dc2bcda5dd5b9f70d88a9522 296 SUPERFAMILY SSF103481 44 145 1.96E-11 T 31-10-2018 Y89_5396 d90141f1dc2bcda5dd5b9f70d88a9522 296 SUPERFAMILY SSF103481 187 290 2.22E-12 T 31-10-2018 Y89_1726 372c5393061a958df37b5083ba376b19 203 Gene3D G3DSA:1.10.1740.10 2 113 1.5E-25 T 31-10-2018 Y89_1726 372c5393061a958df37b5083ba376b19 203 SUPERFAMILY SSF88946 4 97 7.26E-23 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1726 372c5393061a958df37b5083ba376b19 203 Pfam PF08281 Sigma-70, region 4 137 189 4.7E-11 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1726 372c5393061a958df37b5083ba376b19 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 189 6.0E-24 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_1726 372c5393061a958df37b5083ba376b19 203 SUPERFAMILY SSF88659 119 194 6.17E-14 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_1726 372c5393061a958df37b5083ba376b19 203 Pfam PF04542 Sigma-70 region 2 24 90 2.1E-12 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1726 372c5393061a958df37b5083ba376b19 203 Gene3D G3DSA:1.10.10.10 118 197 3.7E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0188 2f39730d1570c18b812679f908d86493 679 Pfam PF13188 PAS domain 173 222 5.6E-5 T 31-10-2018 IPR000014 PAS domain Y89_0188 2f39730d1570c18b812679f908d86493 679 SUPERFAMILY SSF55785 167 275 8.38E-6 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0188 2f39730d1570c18b812679f908d86493 679 SUPERFAMILY SSF58104 353 634 6.28E-74 T 31-10-2018 Y89_0188 2f39730d1570c18b812679f908d86493 679 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 446 601 3.1E-54 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0188 2f39730d1570c18b812679f908d86493 679 Gene3D G3DSA:3.30.450.20 170 289 1.3E-43 T 31-10-2018 Y89_0188 2f39730d1570c18b812679f908d86493 679 Gene3D G3DSA:1.10.287.950 334 635 3.6E-88 T 31-10-2018 Y89_0188 2f39730d1570c18b812679f908d86493 679 Gene3D G3DSA:1.20.120.1530 1 156 1.1E-59 T 31-10-2018 Y89_0188 2f39730d1570c18b812679f908d86493 679 SMART SM00283 386 633 1.2E-90 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0188 2f39730d1570c18b812679f908d86493 679 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 561 590 4.1E-56 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0188 2f39730d1570c18b812679f908d86493 679 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 513 542 4.1E-56 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0188 2f39730d1570c18b812679f908d86493 679 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 484 511 4.1E-56 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0188 2f39730d1570c18b812679f908d86493 679 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 4.1E-56 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 294 365 6.4E-22 T 31-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 Pfam PF03477 ATP cone domain 33 128 2.6E-18 T 31-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 Pfam PF03477 ATP cone domain 149 233 7.7E-8 T 31-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 297 907 3.0E-216 T 31-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 Pfam PF02867 Ribonucleotide reductase, barrel domain 371 905 1.2E-182 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 Gene3D G3DSA:3.20.70.20 221 916 1.6E-249 T 31-10-2018 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 656 678 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 684 707 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 760 787 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 446 465 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 581 592 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 PRINTS PR01183 Ribonucleotide reductase large chain signature 618 641 4.3E-48 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 SUPERFAMILY SSF48168 154 369 4.45E-64 T 31-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 750 771 - T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4197 f918cd8bb43911338ab2aaa104636425 963 SUPERFAMILY SSF51998 370 907 5.8E-182 T 31-10-2018 Y89_0488 37152501266748b73f5b98f8e4c88d31 206 Gene3D G3DSA:3.40.30.10 7 200 7.8E-74 T 31-10-2018 Y89_0488 37152501266748b73f5b98f8e4c88d31 206 SUPERFAMILY SSF47616 77 205 1.16E-17 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_0488 37152501266748b73f5b98f8e4c88d31 206 Gene3D G3DSA:1.20.1050.10 87 198 7.8E-74 T 31-10-2018 Y89_0488 37152501266748b73f5b98f8e4c88d31 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 86 6.3E-18 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_0488 37152501266748b73f5b98f8e4c88d31 206 Pfam PF13410 Glutathione S-transferase, C-terminal domain 130 193 5.7E-7 T 31-10-2018 Y89_0488 37152501266748b73f5b98f8e4c88d31 206 SUPERFAMILY SSF52833 5 108 2.88E-14 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0203 03c12d72b0d803b556e990742e32c774 305 SUPERFAMILY SSF46785 1 86 1.26E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0203 03c12d72b0d803b556e990742e32c774 305 SUPERFAMILY SSF53850 91 297 6.98E-32 T 31-10-2018 Y89_0203 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0203 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0203 03c12d72b0d803b556e990742e32c774 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0203 03c12d72b0d803b556e990742e32c774 305 Pfam PF03466 LysR substrate binding domain 89 296 8.3E-32 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0203 03c12d72b0d803b556e990742e32c774 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.2E-22 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0203 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:3.40.190.10 93 287 1.6E-30 T 31-10-2018 Y89_0203 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:3.40.190.10 166 270 1.6E-30 T 31-10-2018 Y89_0203 03c12d72b0d803b556e990742e32c774 305 Gene3D G3DSA:1.10.10.10 1 92 4.3E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 PIRSF PIRSF000103 1 298 4.4E-83 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 291 1.1E-33 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 Gene3D G3DSA:3.40.50.720 1 163 3.4E-59 T 31-10-2018 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 SUPERFAMILY SSF48179 164 293 1.09E-41 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 SUPERFAMILY SSF51735 1 162 5.02E-49 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 Gene3D G3DSA:1.10.1040.10 164 298 1.3E-47 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 9.9E-53 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_4616 99b932418ee3770d6ae2e6fb638a1c90 298 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 292 7.4E-125 T 31-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 Gene3D G3DSA:2.40.50.140 3 67 2.3E-29 T 31-10-2018 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 4.6E-29 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 SUPERFAMILY SSF50249 3 68 4.41E-25 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 PIRSF PIRSF002599 1 69 1.5E-23 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 SMART SM00357 5 68 3.6E-29 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 26 35 1.7E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 6 21 1.7E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 PRINTS PR00050 Cold shock protein signature 41 59 1.7E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_0477 9e2e5c27e8b6374fe031d2d06ee26562 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 35 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Gene3D G3DSA:3.40.50.300 1 238 4.8E-77 T 31-10-2018 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 SUPERFAMILY SSF50447 243 328 3.98E-25 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Gene3D G3DSA:2.40.30.10 329 434 1.1E-35 T 31-10-2018 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 211 4.7E-14 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 SUPERFAMILY SSF52540 17 234 1.36E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 432 4.0E-205 T 31-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 463 631 32.412 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Gene3D G3DSA:3.40.50.300 445 633 3.6E-51 T 31-10-2018 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Pfam PF00009 Elongation factor Tu GTP binding domain 23 225 2.7E-44 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 460 55.154 T 31-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Pfam PF01583 Adenylylsulphate kinase 464 614 1.9E-52 T 31-10-2018 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 Gene3D G3DSA:2.40.30.10 239 328 1.1E-28 T 31-10-2018 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 450 627 2.4E-41 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 SUPERFAMILY SSF50465 331 433 1.97E-33 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 PRINTS PR00315 GTP-binding elongation factor signature 107 117 3.1E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 PRINTS PR00315 GTP-binding elongation factor signature 26 39 3.1E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 PRINTS PR00315 GTP-binding elongation factor signature 160 169 3.1E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 PRINTS PR00315 GTP-binding elongation factor signature 87 95 3.1E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 PRINTS PR00315 GTP-binding elongation factor signature 123 134 3.1E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Y89_4931 5fd11858794aff5572bef8099a2a8fee 633 SUPERFAMILY SSF52540 463 629 1.74E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 Pfam PF00593 TonB dependent receptor 232 717 6.2E-50 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 SUPERFAMILY SSF56935 67 719 1.05E-94 T 31-10-2018 Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 Gene3D G3DSA:2.40.170.20 189 719 6.3E-75 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 Gene3D G3DSA:2.170.130.10 69 183 1.3E-13 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 78 719 0.0 T 31-10-2018 IPR010100 TonB-dependent copper receptor Y89_1236 bc5e41906b3de375e2a827dea002c3cf 719 Pfam PF07715 TonB-dependent Receptor Plug Domain 87 177 3.0E-12 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 27 36 4.3E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 42 60 4.3E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 PRINTS PR00050 Cold shock protein signature 7 22 4.3E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 Gene3D G3DSA:2.40.50.140 6 68 7.3E-28 T 31-10-2018 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 PIRSF PIRSF002599 1 69 1.4E-22 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 SMART SM00357 6 69 2.3E-26 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 Pfam PF00313 'Cold-shock' DNA-binding domain 7 68 1.3E-27 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_4194 25b3f7c5ef66f67e18093a542955f7de 69 SUPERFAMILY SSF50249 4 67 3.81E-24 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1080 76d53e3ecb23ad3258bc26e44f4202e9 531 Gene3D G3DSA:3.40.109.10 28 254 1.2E-51 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1080 76d53e3ecb23ad3258bc26e44f4202e9 531 SUPERFAMILY SSF55469 100 229 2.86E-7 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1080 76d53e3ecb23ad3258bc26e44f4202e9 531 Gene3D G3DSA:3.40.109.10 290 512 1.6E-33 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1080 76d53e3ecb23ad3258bc26e44f4202e9 531 SUPERFAMILY SSF55469 416 516 7.57E-8 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1080 76d53e3ecb23ad3258bc26e44f4202e9 531 Pfam PF00881 Nitroreductase family 100 229 3.2E-5 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 Gene3D G3DSA:3.20.20.140 56 412 1.7E-129 T 31-10-2018 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 SUPERFAMILY SSF51338 1 432 7.34E-25 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 Pfam PF01979 Amidohydrolase family 51 125 6.0E-6 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 Pfam PF01979 Amidohydrolase family 231 425 3.6E-6 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 Gene3D G3DSA:2.30.40.10 6 427 1.7E-129 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 ProSitePatterns PS00483 Dihydroorotase signature 2. 307 318 - T 31-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_6281 fdba42affa6b3d5c5663e95be731ea54 445 SUPERFAMILY SSF51556 55 371 2.96E-91 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_3118 3db71eaf536d747f66642435b36c5843 415 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 4.6E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_3118 3db71eaf536d747f66642435b36c5843 415 Gene3D G3DSA:3.90.180.10 4 371 8.6E-114 T 31-10-2018 Y89_3118 3db71eaf536d747f66642435b36c5843 415 Pfam PF00107 Zinc-binding dehydrogenase 189 257 1.2E-11 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_3118 3db71eaf536d747f66642435b36c5843 415 SUPERFAMILY SSF50129 1 193 2.28E-54 T 31-10-2018 IPR011032 GroES-like superfamily Y89_3118 3db71eaf536d747f66642435b36c5843 415 Gene3D G3DSA:3.40.50.720 169 343 8.6E-114 T 31-10-2018 Y89_3118 3db71eaf536d747f66642435b36c5843 415 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_3118 3db71eaf536d747f66642435b36c5843 415 SUPERFAMILY SSF51735 156 346 3.81E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3118 3db71eaf536d747f66642435b36c5843 415 SMART SM00829 7 379 0.0013 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_5375 3af99207c1547ec99a031acef254af2c 558 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 5.7E-157 T 31-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Y89_5375 3af99207c1547ec99a031acef254af2c 558 Gene3D G3DSA:3.40.50.300 1 249 2.4E-46 T 31-10-2018 Y89_5375 3af99207c1547ec99a031acef254af2c 558 Gene3D G3DSA:3.40.50.300 254 553 3.1E-54 T 31-10-2018 Y89_5375 3af99207c1547ec99a031acef254af2c 558 SUPERFAMILY SSF52540 2 511 1.18E-26 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5375 3af99207c1547ec99a031acef254af2c 558 SUPERFAMILY SSF52540 1 217 9.03E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5375 3af99207c1547ec99a031acef254af2c 558 Pfam PF02463 RecF/RecN/SMC N terminal domain 8 510 1.5E-15 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Y89_5375 3af99207c1547ec99a031acef254af2c 558 PIRSF PIRSF003128 1 558 3.3E-160 T 31-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Y89_2415 a849516e174b109da9472d06389e498a 196 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 30 3.3E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_0916 f0f6edd26eb43926d14bec42389eeee1 155 Pfam PF13202 EF hand 84 103 8.7E-4 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 Y89_0916 f0f6edd26eb43926d14bec42389eeee1 155 Pfam PF13202 EF hand 111 128 0.0067 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 Y89_0916 f0f6edd26eb43926d14bec42389eeee1 155 Gene3D G3DSA:1.10.238.10 80 137 4.2E-12 T 31-10-2018 Y89_0916 f0f6edd26eb43926d14bec42389eeee1 155 SUPERFAMILY SSF47473 82 140 8.86E-9 T 31-10-2018 IPR011992 EF-hand domain pair Y89_0916 f0f6edd26eb43926d14bec42389eeee1 155 ProSitePatterns PS00018 EF-hand calcium-binding domain. 88 100 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site Y89_3255 47212a1f0b2ead99b7ba60047196c8f7 209 SUPERFAMILY SSF53955 36 201 5.34E-35 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_3255 47212a1f0b2ead99b7ba60047196c8f7 209 Pfam PF01464 Transglycosylase SLT domain 47 154 5.6E-14 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_3255 47212a1f0b2ead99b7ba60047196c8f7 209 Gene3D G3DSA:1.10.530.10 19 192 2.9E-33 T 31-10-2018 Y89_2247 822332d957215e573f690ee866625e62 599 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 46 175 6.8E-25 T 31-10-2018 Y89_2247 822332d957215e573f690ee866625e62 599 Gene3D G3DSA:2.60.120.260 456 599 6.1E-19 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_2247 822332d957215e573f690ee866625e62 599 SUPERFAMILY SSF49785 455 598 4.82E-24 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_2247 822332d957215e573f690ee866625e62 599 SUPERFAMILY SSF55486 22 220 1.06E-20 T 31-10-2018 Y89_2247 822332d957215e573f690ee866625e62 599 Gene3D G3DSA:3.40.390.10 2 196 6.1E-17 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Y89_2247 822332d957215e573f690ee866625e62 599 SUPERFAMILY SSF49785 306 440 5.67E-14 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_2247 822332d957215e573f690ee866625e62 599 Pfam PF02018 Carbohydrate binding domain 458 583 1.8E-9 T 31-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 Y89_2247 822332d957215e573f690ee866625e62 599 Gene3D G3DSA:2.60.120.260 297 445 2.8E-11 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 SMART SM00535 20 148 1.8E-59 T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 Gene3D G3DSA:3.30.160.20 153 223 8.5E-16 T 31-10-2018 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 Gene3D G3DSA:1.10.1520.10 1 145 4.5E-45 T 31-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 Pfam PF00035 Double-stranded RNA binding motif 155 219 8.4E-8 T 31-10-2018 IPR014720 Double-stranded RNA-binding domain Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 SUPERFAMILY SSF69065 4 158 9.07E-50 T 31-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 Pfam PF14622 Ribonuclease-III-like 18 139 6.9E-35 T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 SUPERFAMILY SSF54768 108 226 5.79E-26 T 31-10-2018 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 30.116 T 31-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 220 2.4E-69 T 31-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Y89_4588 8a85b935615972fe6aafaebefd54bc09 229 SMART SM00358 155 223 7.1E-16 T 31-10-2018 IPR014720 Double-stranded RNA-binding domain Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Pfam PF00270 DEAD/DEAH box helicase 19 165 5.2E-7 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Gene3D G3DSA:3.40.50.300 183 352 7.6E-56 T 31-10-2018 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Pfam PF08482 ATP-dependent helicase C-terminal 694 825 3.2E-52 T 31-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Pfam PF00271 Helicase conserved C-terminal domain 210 333 2.1E-14 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 SMART SM00490 230 334 6.5E-19 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 SMART SM00487 5 189 2.1E-17 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 SMART SM00847 393 496 2.8E-18 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Pfam PF04408 Helicase associated domain (HA2) 394 454 9.2E-12 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 837 0.0 T 31-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 SUPERFAMILY SSF52540 30 437 3.56E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 PIRSF PIRSF005496 1 838 0.0 T 31-10-2018 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Gene3D G3DSA:3.40.50.300 2 182 1.6E-55 T 31-10-2018 Y89_1062 e198a9901e1fe4a7f5703d30588b948a 838 Gene3D G3DSA:1.20.120.1080 377 468 1.5E-10 T 31-10-2018 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 SMART SM00382 509 694 2.0E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:3.40.50.300 470 715 1.2E-61 T 31-10-2018 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 ProSitePatterns PS00211 ABC transporters family signature. 620 634 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 SUPERFAMILY SSF52540 476 709 1.26E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 SUPERFAMILY SSF90123 157 467 3.14E-50 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 20 709 1.8E-271 T 31-10-2018 IPR017750 ATPase, type I secretion system Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:1.20.1560.10 156 468 3.9E-52 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 Pfam PF00005 ABC transporter 505 648 4.5E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 Pfam PF00664 ABC transporter transmembrane region 173 432 2.4E-18 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_3449 8e4e7c0067a756485a1a5ee1291dcac3 723 Gene3D G3DSA:3.90.70.10 18 141 2.2E-27 T 31-10-2018 Y89_0043 28e798fab1488045615d6e039570f443 402 Gene3D G3DSA:3.40.50.1100 59 389 8.3E-190 T 31-10-2018 Y89_0043 28e798fab1488045615d6e039570f443 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 86 100 - T 31-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0043 28e798fab1488045615d6e039570f443 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 7 396 52.811 T 31-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0043 28e798fab1488045615d6e039570f443 402 PIRSF PIRSF001413 4 402 5.3E-163 T 31-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0043 28e798fab1488045615d6e039570f443 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 12 395 5.0E-196 T 31-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0043 28e798fab1488045615d6e039570f443 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 383 3.0E-46 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_0043 28e798fab1488045615d6e039570f443 402 Gene3D G3DSA:3.40.50.1100 15 211 8.3E-190 T 31-10-2018 Y89_0043 28e798fab1488045615d6e039570f443 402 SUPERFAMILY SSF53686 8 394 1.7E-151 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 Gene3D G3DSA:3.20.20.70 1 334 4.6E-132 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 SUPERFAMILY SSF51395 1 336 3.3E-106 T 31-10-2018 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 Pfam PF01180 Dihydroorotate dehydrogenase 44 335 2.5E-86 T 31-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 335 51.402 T 31-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 338 4.3E-131 T 31-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 PIRSF PIRSF000164 16 342 4.2E-94 T 31-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Y89_1969 fab8da6b653b1737b6e0786dc18446b8 342 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 31-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Y89_2963 487e64ac380fe0fa43fac3e7b63ddffa 452 Pfam PF04966 Carbohydrate-selective porin, OprB family 78 452 3.7E-119 T 31-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 Y89_2963 487e64ac380fe0fa43fac3e7b63ddffa 452 Gene3D G3DSA:2.40.160.180 33 452 4.5E-168 T 31-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 SUPERFAMILY SSF46689 2 65 3.75E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.6E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 6.9E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 6.9E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 Gene3D G3DSA:1.10.357.10 1 203 5.5E-54 T 31-10-2018 Y89_5731 8525f6ba87f5d50bb96801ddde9ed553 205 Pfam PF13972 Bacterial transcriptional repressor 56 192 8.1E-32 T 31-10-2018 IPR025722 Bacterial transcriptional repressor TetR Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 SUPERFAMILY SSF51366 5 230 2.07E-73 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 5 232 39.575 T 31-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 227 2.1E-56 T 31-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 Gene3D G3DSA:3.20.20.70 1 232 4.8E-83 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 59 72 - T 31-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 SMART SM00934 7 227 1.3E-99 T 31-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_2146 32c0ed00d7eccedb69c54a3ddd3597bd 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 6 226 1.4E-50 T 31-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_0739 448385541eb21eaba5aaf4f6d0819ad3 363 SUPERFAMILY SSF53067 3 313 1.29E-24 T 31-10-2018 Y89_0739 448385541eb21eaba5aaf4f6d0819ad3 363 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 3 363 7.4E-168 T 31-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 Y89_0739 448385541eb21eaba5aaf4f6d0819ad3 363 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 363 40.789 T 31-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 Y89_0739 448385541eb21eaba5aaf4f6d0819ad3 363 Gene3D G3DSA:3.30.420.40 140 323 2.7E-133 T 31-10-2018 Y89_0739 448385541eb21eaba5aaf4f6d0819ad3 363 Gene3D G3DSA:3.30.420.40 5 354 2.7E-133 T 31-10-2018 Y89_1470 3e6b342681132053db99f75e67154665 115 Pfam PF00892 EamA-like transporter family 39 111 5.6E-9 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1470 3e6b342681132053db99f75e67154665 115 SUPERFAMILY SSF103481 34 113 2.09E-13 T 31-10-2018 Y89_1470 3e6b342681132053db99f75e67154665 115 Gene3D G3DSA:1.10.3730.20 4 115 3.6E-9 T 31-10-2018 Y89_1470 3e6b342681132053db99f75e67154665 115 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 1 115 29.102 T 31-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Pfam PF08448 PAS fold 567 676 1.1E-8 T 31-10-2018 IPR013656 PAS fold-4 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Gene3D G3DSA:3.30.565.10 764 919 5.3E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Gene3D G3DSA:3.30.450.20 301 417 1.5E-7 T 31-10-2018 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Gene3D G3DSA:3.30.450.20 431 547 1.1E-16 T 31-10-2018 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SUPERFAMILY SSF55785 418 547 1.54E-13 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00387 802 916 1.2E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00091 561 627 8.8E-5 T 31-10-2018 IPR000014 PAS domain Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00091 433 502 7.7 T 31-10-2018 IPR000014 PAS domain Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SUPERFAMILY SSF55874 751 916 6.02E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Pfam PF08447 PAS fold 460 541 6.7E-8 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 877 895 9.8E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 860 9.8E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 864 874 9.8E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 900 913 9.8E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00388 690 760 1.6E-6 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Pfam PF00512 His Kinase A (phospho-acceptor) domain 690 756 1.3E-6 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SUPERFAMILY SSF55785 546 671 2.79E-18 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 557 682 1.7E-9 T 31-10-2018 IPR000014 PAS domain Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 803 915 3.3E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00086 507 549 5.6 T 31-10-2018 IPR001610 PAC motif Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00086 381 421 21.0 T 31-10-2018 IPR001610 PAC motif Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SMART SM00086 633 675 490.0 T 31-10-2018 IPR001610 PAC motif Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Gene3D G3DSA:3.30.450.20 552 684 2.8E-18 T 31-10-2018 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 SUPERFAMILY SSF47384 685 757 4.51E-8 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4777 2b8b042244586cc9dbd24f08f9963bae 923 Gene3D G3DSA:1.10.287.130 685 758 2.6E-13 T 31-10-2018 Y89_0909 ee8a710dee1971f1e95b2a019e334f77 396 Gene3D G3DSA:1.20.1250.20 8 384 4.7E-42 T 31-10-2018 Y89_0909 ee8a710dee1971f1e95b2a019e334f77 396 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.901 T 31-10-2018 IPR023495 Sugar efflux transporter, putative Y89_0909 ee8a710dee1971f1e95b2a019e334f77 396 Pfam PF07690 Major Facilitator Superfamily 18 349 1.2E-32 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0909 ee8a710dee1971f1e95b2a019e334f77 396 SUPERFAMILY SSF103473 7 385 1.7E-54 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 Gene3D G3DSA:3.20.10.10 132 303 8.2E-55 T 31-10-2018 Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 222 - T 31-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 1.7E-146 T 31-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 SUPERFAMILY SSF56752 1 303 2.88E-104 T 31-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 Gene3D G3DSA:3.30.470.10 2 131 1.4E-41 T 31-10-2018 Y89_5685 34791fc7b1fd4444b5594dec1aea2846 307 Pfam PF01063 Amino-transferase class IV 36 267 1.5E-54 T 31-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Y89_4325 5f6274e309960769615598a1ab9655fd 251 Pfam PF08808 RES domain 63 207 5.7E-25 T 31-10-2018 IPR014914 RES domain Y89_4325 5f6274e309960769615598a1ab9655fd 251 SMART SM00953 71 208 3.5E-36 T 31-10-2018 IPR014914 RES domain Y89_2066 3c1fed4d1edbe3cf9d5be132114fa5ea 189 Pfam PF06938 Protein of unknown function (DUF1285) 38 182 2.3E-60 T 31-10-2018 IPR010707 Protein of unknown function DUF1285 Y89_2066 3c1fed4d1edbe3cf9d5be132114fa5ea 189 Gene3D G3DSA:2.30.270.10 89 158 9.5E-31 T 31-10-2018 IPR023361 DUF1285, beta-roll domain superfamily Y89_2066 3c1fed4d1edbe3cf9d5be132114fa5ea 189 Gene3D G3DSA:3.10.540.10 2 88 3.0E-35 T 31-10-2018 Y89_2066 3c1fed4d1edbe3cf9d5be132114fa5ea 189 PIRSF PIRSF029557 1 189 5.2E-90 T 31-10-2018 IPR010707 Protein of unknown function DUF1285 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 276 355 4.6E-34 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 SUPERFAMILY SSF57884 10 97 6.67E-29 T 31-10-2018 IPR035451 Ada-like domain superfamily Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Gene3D G3DSA:1.10.10.60 84 141 3.8E-25 T 31-10-2018 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 326 332 - T 31-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Pfam PF02805 Metal binding domain of Ada 16 77 8.9E-30 T 31-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Gene3D G3DSA:1.10.10.60 142 186 3.8E-7 T 31-10-2018 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 PIRSF PIRSF000409 2 358 2.8E-142 T 31-10-2018 IPR016221 Bifunctional regulatory protein Ada Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Gene3D G3DSA:1.10.10.10 275 358 5.0E-35 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 SUPERFAMILY SSF53155 196 274 1.37E-21 T 31-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Pfam PF12833 Helix-turn-helix domain 111 189 5.2E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 SMART SM00342 105 188 7.7E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 SUPERFAMILY SSF46767 275 356 1.19E-30 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 SUPERFAMILY SSF46689 90 137 9.86E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 277 356 1.5E-32 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Gene3D G3DSA:3.30.160.70 187 274 3.4E-32 T 31-10-2018 Y89_3163 808a761a3166ac4f8322ca19e5e0aa0d 358 Gene3D G3DSA:3.40.10.10 8 81 2.8E-29 T 31-10-2018 IPR035451 Ada-like domain superfamily Y89_6229 289cc62501fca510e84963380de3a661 211 PIRSF PIRSF001488 1 209 1.2E-77 T 31-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Y89_6229 289cc62501fca510e84963380de3a661 211 Gene3D G3DSA:3.40.30.10 20 211 3.4E-58 T 31-10-2018 Y89_6229 289cc62501fca510e84963380de3a661 211 Pfam PF01323 DSBA-like thioredoxin domain 96 182 4.0E-15 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Y89_6229 289cc62501fca510e84963380de3a661 211 SUPERFAMILY SSF52833 25 203 4.03E-45 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_6229 289cc62501fca510e84963380de3a661 211 ProSitePatterns PS00194 Thioredoxin family active site. 48 66 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 249 275 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 317 329 5.7E-55 T 31-10-2018 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 123 4.5E-22 T 31-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 612 4.6E-230 T 31-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 3.4E-9 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 360 382 3.4E-9 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 419 441 3.4E-9 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 3.4E-9 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_2441 83f1357d087f7153cacffa6c28f8093c 615 Pfam PF00361 Proton-conducting membrane transporter 136 427 1.1E-90 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Pfam PF00364 Biotin-requiring enzyme 580 645 4.2E-18 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 SUPERFAMILY SSF56059 87 351 1.75E-69 T 31-10-2018 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 SUPERFAMILY SSF51230 567 646 4.71E-22 T 31-10-2018 IPR011053 Single hybrid motif Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 SUPERFAMILY SSF51246 335 453 5.76E-40 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Pfam PF02785 Biotin carboxylase C-terminal domain 340 447 1.3E-35 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 326 2.0E-80 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Gene3D G3DSA:3.30.470.130 1 454 4.2E-199 T 31-10-2018 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 SMART SM00878 340 447 1.7E-54 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 SUPERFAMILY SSF52440 4 117 4.32E-44 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 114 1.8E-40 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Gene3D G3DSA:2.40.50.100 579 647 2.8E-25 T 31-10-2018 Y89_2519 61d67666bd31caf30ae99f2d09a1746a 649 Gene3D G3DSA:3.30.700.40 457 571 2.7E-46 T 31-10-2018 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 SUPERFAMILY SSF53649 5 512 2.36E-77 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 Gene3D G3DSA:3.40.1450.10 79 313 1.4E-217 T 31-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 4.8E-245 T 31-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 PIRSF PIRSF001492 1 514 9.6E-205 T 31-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 Pfam PF01676 Metalloenzyme superfamily 6 501 2.0E-79 T 31-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 Gene3D G3DSA:3.40.720.10 7 510 1.4E-217 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 SUPERFAMILY SSF64158 79 311 2.09E-83 T 31-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 51.269 T 31-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5803 468fb842a01cadabb3bf767e25a4492f 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 300 5.3E-80 T 31-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 Pfam PF02543 Carbamoyltransferase N-terminus 5 354 2.7E-57 T 31-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 Gene3D G3DSA:3.30.420.350 133 348 1.6E-83 T 31-10-2018 Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 Pfam PF16861 Carbamoyltransferase C-terminus 408 575 1.9E-61 T 31-10-2018 IPR031730 Carbamoyltransferase, C-terminal Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 Gene3D G3DSA:3.90.870.20 368 574 3.7E-72 T 31-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 SUPERFAMILY SSF53067 22 359 8.42E-12 T 31-10-2018 Y89_5677 f998d5cd7448d51fa00b4bbe7af16412 585 Gene3D G3DSA:3.30.420.40 14 355 1.6E-83 T 31-10-2018 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 SUPERFAMILY SSF51905 1 400 3.24E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 Gene3D G3DSA:3.30.9.50 81 273 1.6E-114 T 31-10-2018 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 Gene3D G3DSA:3.50.50.60 4 342 1.6E-114 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 31-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 Pfam PF01494 FAD binding domain 4 345 1.3E-23 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 4 394 5.1E-136 T 31-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 1.4E-17 T 31-10-2018 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.4E-17 T 31-10-2018 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-17 T 31-10-2018 Y89_5908 5cd9a97287392651c6abc067d8338bbe 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 1.4E-17 T 31-10-2018 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 682 691 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 579 589 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 786 802 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 654 661 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 718 737 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 809 817 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 742 751 3.6E-12 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 Gene3D G3DSA:3.40.50.80 708 850 7.8E-38 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 Pfam PF00175 Oxidoreductase NAD-binding domain 719 823 5.6E-11 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 Gene3D G3DSA:3.40.50.360 364 535 7.8E-37 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 Pfam PF03929 PepSY-associated TM region 6 366 2.6E-66 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 Pfam PF00258 Flavodoxin 393 522 5.9E-25 T 31-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 SUPERFAMILY SSF63380 539 709 2.89E-24 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 SUPERFAMILY SSF52218 388 531 8.6E-38 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00369 Flavodoxin signature 471 481 5.4E-6 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00369 Flavodoxin signature 392 405 5.4E-6 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 PRINTS PR00369 Flavodoxin signature 440 451 5.4E-6 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_4999 f764aa72d65defa894eadcfb0ac0a5b1 850 SUPERFAMILY SSF52343 707 850 3.67E-36 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 PIRSF PIRSF500125 1 500 2.0E-235 T 31-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 SUPERFAMILY SSF56645 9 274 7.85E-74 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 11 273 1.2E-88 T 31-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 Gene3D G3DSA:2.40.110.10 145 272 3.8E-41 T 31-10-2018 Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 281 480 1.1E-54 T 31-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 Gene3D G3DSA:1.10.3140.10 9 144 4.1E-42 T 31-10-2018 Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 Gene3D G3DSA:1.20.140.10 273 468 1.2E-54 T 31-10-2018 Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 PIRSF PIRSF000331 7 492 7.0E-183 T 31-10-2018 IPR004925 HpaB/PvcC/4-BUDH Y89_2998 0a9cfa4363fdd57a207ffbf8bfb87c2a 500 SUPERFAMILY SSF47203 265 484 2.09E-50 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2609 1ec9b31afdec741800d5934f3a90f418 186 SUPERFAMILY SSF55729 10 179 2.06E-34 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2609 1ec9b31afdec741800d5934f3a90f418 186 Pfam PF00583 Acetyltransferase (GNAT) family 35 149 1.1E-16 T 31-10-2018 IPR000182 GNAT domain Y89_2609 1ec9b31afdec741800d5934f3a90f418 186 Gene3D G3DSA:3.40.630.30 1 186 1.4E-59 T 31-10-2018 Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 SUPERFAMILY SSF53448 47 345 3.29E-66 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 Pfam PF00483 Nucleotidyl transferase 124 345 1.4E-37 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 Pfam PF00571 CBS domain 9 53 4.1E-4 T 31-10-2018 IPR000644 CBS domain Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 SUPERFAMILY SSF54631 8 55 1.98E-5 T 31-10-2018 Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 Gene3D G3DSA:3.90.550.10 122 347 3.0E-59 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1862 2d8078731120acd9cb4b4b5bad352a70 348 Gene3D G3DSA:3.10.580.10 1 114 2.1E-21 T 31-10-2018 Y89_4276 be07e366e7fef4b6c911f932c5dccd28 146 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 98 144 2.2E-14 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y89_4276 be07e366e7fef4b6c911f932c5dccd28 146 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 146 6.5E-49 T 31-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Y89_4276 be07e366e7fef4b6c911f932c5dccd28 146 Pfam PF00460 Flagella basal body rod protein 7 34 1.5E-9 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y89_4276 be07e366e7fef4b6c911f932c5dccd28 146 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Y89_3773 3ccc47e3bca404a82295febc27403c04 352 SUPERFAMILY SSF53335 181 274 2.61E-13 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3773 3ccc47e3bca404a82295febc27403c04 352 Gene3D G3DSA:3.30.2300.20 79 171 5.4E-26 T 31-10-2018 Y89_3773 3ccc47e3bca404a82295febc27403c04 352 Pfam PF01728 FtsJ-like methyltransferase 182 275 2.0E-8 T 31-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Y89_3773 3ccc47e3bca404a82295febc27403c04 352 Gene3D G3DSA:3.40.50.150 172 351 1.0E-53 T 31-10-2018 Y89_3773 3ccc47e3bca404a82295febc27403c04 352 Gene3D G3DSA:3.30.70.2810 1 74 5.5E-25 T 31-10-2018 Y89_3773 3ccc47e3bca404a82295febc27403c04 352 PIRSF PIRSF028774 1 352 1.6E-169 T 31-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 Y89_3773 3ccc47e3bca404a82295febc27403c04 352 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 350 75.693 T 31-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 Y89_5403 3059810b12f33f12baa509f286067e45 249 SUPERFAMILY SSF53335 4 247 1.67E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5403 3059810b12f33f12baa509f286067e45 249 Gene3D G3DSA:3.40.50.150 8 249 9.2E-62 T 31-10-2018 Y89_5403 3059810b12f33f12baa509f286067e45 249 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 249 38.919 T 31-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 Y89_5403 3059810b12f33f12baa509f286067e45 249 Pfam PF13489 Methyltransferase domain 31 159 5.7E-15 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 112 4.2E-39 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF52096 581 834 1.12E-47 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Pfam PF02785 Biotin carboxylase C-terminal domain 343 451 9.4E-29 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:3.30.1490.20 133 204 8.7E-21 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Pfam PF01039 Carboxyl transferase domain 605 1077 6.2E-71 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF52096 807 1075 2.38E-66 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 514 531 - T 31-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF52440 4 114 1.65E-38 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:3.90.226.10 842 1095 5.8E-74 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 327 1.3E-57 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF56059 85 334 1.94E-56 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:2.40.50.100 492 560 5.5E-17 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF51246 338 457 6.28E-30 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:3.40.50.20 6 132 4.8E-47 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:3.30.470.20 206 462 9.4E-92 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Gene3D G3DSA:3.90.226.10 574 834 1.6E-67 T 31-10-2018 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SUPERFAMILY SSF51230 486 558 4.19E-15 T 31-10-2018 IPR011053 Single hybrid motif Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 SMART SM00878 343 451 4.5E-46 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3949 72299fc009f3daf1d77f7d10d9525e04 1095 Pfam PF00364 Biotin-requiring enzyme 493 555 5.5E-12 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 Pfam PF00884 Sulfatase 5 347 7.8E-52 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 4 501 6.5E-265 T 31-10-2018 IPR017785 Choline-sulfatase Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 Gene3D G3DSA:3.40.720.10 4 456 3.1E-111 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 Pfam PF12411 Choline sulfatase enzyme C terminal 449 500 1.4E-24 T 31-10-2018 IPR025863 Choline sulfatase enzyme C-terminal domain Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 SUPERFAMILY SSF53649 2 478 1.24E-113 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_0037 92f13eb8611dce3a9382f67ef9b03c83 503 ProSitePatterns PS00149 Sulfatases signature 2. 94 104 - T 31-10-2018 IPR024607 Sulfatase, conserved site Y89_3821 0d9784da6a67d15943fd773d8c55aa5b 308 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 302 5.8E-166 T 31-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 Y89_3821 0d9784da6a67d15943fd773d8c55aa5b 308 SUPERFAMILY SSF88713 4 303 1.51E-101 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_3821 0d9784da6a67d15943fd773d8c55aa5b 308 Gene3D G3DSA:3.20.20.370 1 308 9.2E-119 T 31-10-2018 Y89_3821 0d9784da6a67d15943fd773d8c55aa5b 308 Pfam PF01522 Polysaccharide deacetylase 76 164 2.9E-17 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Pfam PF13426 PAS domain 37 132 2.6E-15 T 31-10-2018 IPR000014 PAS domain Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SUPERFAMILY SSF58104 248 435 1.19E-56 T 31-10-2018 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SMART SM00091 140 209 9.5 T 31-10-2018 IPR000014 PAS domain Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SMART SM00091 20 88 1.8E-4 T 31-10-2018 IPR000014 PAS domain Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SUPERFAMILY SSF55785 30 132 3.91E-26 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SUPERFAMILY SSF55785 152 254 3.84E-25 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SMART SM00086 215 257 1.4E-7 T 31-10-2018 IPR001610 PAC motif Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SMART SM00086 93 135 0.049 T 31-10-2018 IPR001610 PAC motif Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Pfam PF08447 PAS fold 165 250 1.7E-15 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Gene3D G3DSA:3.30.450.20 5 126 1.8E-23 T 31-10-2018 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Gene3D G3DSA:3.30.450.20 127 247 9.4E-22 T 31-10-2018 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Gene3D G3DSA:1.10.287.950 248 438 5.5E-54 T 31-10-2018 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 260 2.4E-15 T 31-10-2018 IPR000014 PAS domain Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 141 2.3E-16 T 31-10-2018 IPR000014 PAS domain Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 275 436 4.6E-41 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3926 48223f5fc6c5be2e6fb11a54b60d4dc2 440 SMART SM00283 246 440 3.0E-24 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2504 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 7.0E-18 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_2504 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 Gene3D G3DSA:1.20.120.1760 2 180 1.2E-17 T 31-10-2018 Y89_2504 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_2504 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 179 5.7E-56 T 31-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y89_2504 f4d6e8cd1e0eab05dd7ffbef396b04f0 186 PIRSF PIRSF000847 1 186 8.8E-51 T 31-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Y89_4207 148258c1f5c870125fac64ae87a91714 300 Gene3D G3DSA:3.40.190.290 98 297 3.1E-20 T 31-10-2018 Y89_4207 148258c1f5c870125fac64ae87a91714 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 3.3E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4207 148258c1f5c870125fac64ae87a91714 300 Pfam PF03466 LysR substrate binding domain 96 294 4.9E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4207 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4207 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4207 148258c1f5c870125fac64ae87a91714 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.8E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4207 148258c1f5c870125fac64ae87a91714 300 SUPERFAMILY SSF46785 8 93 1.31E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4207 148258c1f5c870125fac64ae87a91714 300 Gene3D G3DSA:1.10.10.10 8 96 3.2E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4207 148258c1f5c870125fac64ae87a91714 300 SUPERFAMILY SSF53850 98 295 3.15E-31 T 31-10-2018 Y89_1515 55d11b3a8bb74315ec37aba1ebac66f4 238 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 8 210 8.2E-88 T 31-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Y89_1515 55d11b3a8bb74315ec37aba1ebac66f4 238 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 212 26.741 T 31-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Y89_1515 55d11b3a8bb74315ec37aba1ebac66f4 238 PIRSF PIRSF006102 2 220 6.6E-74 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_1515 55d11b3a8bb74315ec37aba1ebac66f4 238 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 202 3.6E-62 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 Pfam PF05048 Periplasmic copper-binding protein (NosD) 144 383 1.2E-68 T 31-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 41 420 1.2E-140 T 31-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00722 38 187 2.5E-24 T 31-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00722 193 367 6.7E-30 T 31-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 85 113 31.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 167 188 1.5 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 211 232 3900.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 189 210 3300.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 233 255 340.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 137 166 1000.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 315 353 4000.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 115 136 31.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SMART SM00710 292 313 400.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 Gene3D G3DSA:2.160.20.10 72 207 7.2E-16 T 31-10-2018 IPR012334 Pectin lyase fold Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 SUPERFAMILY SSF51126 37 407 1.08E-56 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 Gene3D G3DSA:2.160.20.10 211 353 1.5E-8 T 31-10-2018 IPR012334 Pectin lyase fold Y89_1616 53c1ff97bed035f526ebd4508aacf59c 428 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 288 329 1.6E-5 T 31-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_0898 7ad0fd59df6317af2474c72fde7315db 307 SUPERFAMILY SSF53213 12 280 5.1E-50 T 31-10-2018 Y89_0898 7ad0fd59df6317af2474c72fde7315db 307 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 280 9.7E-80 T 31-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Y89_0898 7ad0fd59df6317af2474c72fde7315db 307 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 282 1.7E-138 T 31-10-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 Y89_0898 7ad0fd59df6317af2474c72fde7315db 307 Gene3D G3DSA:3.40.830.10 1 300 2.0E-80 T 31-10-2018 Y89_3831 6d1ebce0ddf712a99bcdc4b07c437724 455 Pfam PF00860 Permease family 22 400 1.0E-99 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_3831 6d1ebce0ddf712a99bcdc4b07c437724 455 TIGRFAM TIGR03173 pbuX: xanthine permease 26 434 1.1E-160 T 31-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 Y89_3831 6d1ebce0ddf712a99bcdc4b07c437724 455 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 349 369 - T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_3831 6d1ebce0ddf712a99bcdc4b07c437724 455 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 17 432 2.1E-113 T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_1637 7ea46f01a1a23555e191ba6c432589cd 256 SMART SM00849 36 225 0.009 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1637 7ea46f01a1a23555e191ba6c432589cd 256 Pfam PF12706 Beta-lactamase superfamily domain 64 225 8.3E-17 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1637 7ea46f01a1a23555e191ba6c432589cd 256 Gene3D G3DSA:3.60.15.10 1 256 1.2E-61 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1637 7ea46f01a1a23555e191ba6c432589cd 256 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 252 1.1E-113 T 31-10-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1637 7ea46f01a1a23555e191ba6c432589cd 256 SUPERFAMILY SSF56281 1 255 9.68E-38 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1729 581341d1dd0f723cacb89f99c8c4d599 284 Hamap MF_00697 UPF0276 protein . 9 277 45.304 T 31-10-2018 IPR007801 Uncharacterised protein family UPF0276 Y89_1729 581341d1dd0f723cacb89f99c8c4d599 284 Gene3D G3DSA:3.20.20.150 5 281 6.4E-84 T 31-10-2018 Y89_1729 581341d1dd0f723cacb89f99c8c4d599 284 SUPERFAMILY SSF51658 29 212 2.63E-8 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_1729 581341d1dd0f723cacb89f99c8c4d599 284 Pfam PF05114 Protein of unknown function (DUF692) 8 269 1.8E-97 T 31-10-2018 IPR007801 Uncharacterised protein family UPF0276 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 263 38.094 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 Gene3D G3DSA:3.20.20.70 1 268 4.4E-103 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 Pfam PF00290 Tryptophan synthase alpha chain 8 263 7.3E-105 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 9.3E-82 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 31-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Y89_0042 3ff3ab8392d826aa863761ad56af8fc2 268 SUPERFAMILY SSF51366 1 248 1.51E-92 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 PIRSF PIRSF039088 2 514 2.2E-233 T 31-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF52540 97 382 1.3E-92 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 50.076 T 31-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 1.4E-44 T 31-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:1.20.150.20 384 514 1.6E-48 T 31-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF47917 384 512 6.02E-45 T 31-10-2018 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:3.40.50.300 95 383 3.5E-130 T 31-10-2018 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 513 3.7E-252 T 31-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 1.1E-72 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Gene3D G3DSA:2.40.30.20 2 94 2.5E-32 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 2.7E-16 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 SUPERFAMILY SSF50615 11 95 2.16E-28 T 31-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6296 b568bae2c12809dee0eead7079fe75f9 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6090 a1aca302b5f933199199a3ca0f30be5b 133 SUPERFAMILY SSF143744 2 131 2.75E-34 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_6090 a1aca302b5f933199199a3ca0f30be5b 133 Pfam PF03928 Haem-degrading 10 129 1.7E-29 T 31-10-2018 IPR005624 Haem-degrading Y89_6090 a1aca302b5f933199199a3ca0f30be5b 133 Gene3D G3DSA:3.30.450.150 1 133 5.0E-38 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 SUPERFAMILY SSF52210 292 454 8.61E-22 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Pfam PF13549 ATP-grasp domain 478 693 2.9E-50 T 31-10-2018 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Gene3D G3DSA:3.40.50.261 141 288 1.8E-33 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Gene3D G3DSA:3.30.470.20 481 691 4.1E-59 T 31-10-2018 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Gene3D G3DSA:3.30.1490.20 499 575 4.1E-59 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 SUPERFAMILY SSF56059 481 692 2.36E-30 T 31-10-2018 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 SUPERFAMILY SSF51735 6 127 9.46E-23 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 SMART SM00881 9 99 1.5E-18 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 152 285 1.1E-33 T 31-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Gene3D G3DSA:3.40.50.261 290 460 1.2E-16 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 SUPERFAMILY SSF52210 129 286 7.06E-32 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Gene3D G3DSA:3.40.50.720 3 126 5.6E-25 T 31-10-2018 Y89_5648 7de37bce5ed7b7141346d33897de87a2 696 Pfam PF13380 CoA binding domain 25 130 3.1E-12 T 31-10-2018 IPR003781 CoA-binding GO:0048037 Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 Gene3D G3DSA:3.40.50.720 1 252 1.3E-34 T 31-10-2018 Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 5.6E-22 T 31-10-2018 Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 SUPERFAMILY SSF51735 3 252 2.46E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 9.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 9.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 9.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 9.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1865 ca267fbe4abe1c805a10d959df32d0e3 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1095 7cf687208436c0b6a802940b70fce00b 56 Pfam PF10617 Protein of unknown function (DUF2474) 17 52 3.5E-17 T 31-10-2018 IPR018895 Protein of unknown function DUF2474 Y89_0593 8681254f26f08f202a0de4fb5cfa0dff 908 SMART SM01276 435 780 3.4E-8 T 31-10-2018 IPR031161 Peptidase family M60 domain Y89_0593 8681254f26f08f202a0de4fb5cfa0dff 908 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 547 857 1.9E-7 T 31-10-2018 IPR031161 Peptidase family M60 domain Y89_6123 d48a217240ce775aea60b49425cd9cad 159 Gene3D G3DSA:3.10.129.10 2 140 9.0E-37 T 31-10-2018 Y89_6123 d48a217240ce775aea60b49425cd9cad 159 SUPERFAMILY SSF54637 6 156 1.1E-45 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_6123 d48a217240ce775aea60b49425cd9cad 159 Pfam PF13279 Thioesterase-like superfamily 12 129 1.5E-18 T 31-10-2018 Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 Pfam PF00691 OmpA family 360 454 5.1E-9 T 31-10-2018 IPR006665 OmpA-like domain Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 Pfam PF12849 PBP superfamily domain 101 310 1.7E-25 T 31-10-2018 IPR024370 PBP domain Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 Gene3D G3DSA:3.30.1330.60 333 461 5.6E-18 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 SUPERFAMILY SSF103088 337 460 3.27E-20 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 SUPERFAMILY SSF53850 48 371 9.88E-60 T 31-10-2018 Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 Gene3D G3DSA:3.40.190.10 100 324 1.1E-53 T 31-10-2018 Y89_2643 7fcec779aec93d98235d7d4520676a9b 461 Gene3D G3DSA:3.40.190.10 157 288 1.1E-53 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 286 5.0E-16 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Gene3D G3DSA:2.40.50.100 55 89 1.6E-9 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 SUPERFAMILY SSF56954 17 206 4.18E-7 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Gene3D G3DSA:1.10.287.470 90 110 1.6E-9 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Gene3D G3DSA:1.10.287.470 117 213 2.9E-7 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Gene3D G3DSA:2.40.30.170 226 346 3.7E-35 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 SUPERFAMILY SSF111369 161 263 2.22E-10 T 31-10-2018 Y89_5833 52a4a14a2f17c93c7b7e7f94c46a3e72 394 Pfam PF00529 HlyD membrane-fusion protein of T1SS 33 341 6.9E-15 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_2307 7440dff33f76380cd36e98359334cc38 118 Pfam PF13411 MerR HTH family regulatory protein 19 87 1.0E-22 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2307 7440dff33f76380cd36e98359334cc38 118 Gene3D G3DSA:1.10.1660.10 14 118 6.6E-22 T 31-10-2018 Y89_2307 7440dff33f76380cd36e98359334cc38 118 SMART SM00422 19 89 5.3E-9 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2307 7440dff33f76380cd36e98359334cc38 118 SUPERFAMILY SSF46955 17 113 1.6E-20 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_0324 f32c4e9c14aabb4b57beee417915eed6 350 SMART SM00342 254 335 1.4E-11 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0324 f32c4e9c14aabb4b57beee417915eed6 350 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 37 211 6.7E-39 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_0324 f32c4e9c14aabb4b57beee417915eed6 350 Gene3D G3DSA:1.10.10.60 233 346 6.0E-20 T 31-10-2018 Y89_0324 f32c4e9c14aabb4b57beee417915eed6 350 SUPERFAMILY SSF46689 289 338 7.17E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0324 f32c4e9c14aabb4b57beee417915eed6 350 Pfam PF12833 Helix-turn-helix domain 261 337 1.9E-15 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3086 93e398994b6f19512f981670015b9c40 104 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 95 1.7E-22 T 31-10-2018 Y89_3086 93e398994b6f19512f981670015b9c40 104 Gene3D G3DSA:3.10.20.440 3 102 7.3E-18 T 31-10-2018 Y89_3086 93e398994b6f19512f981670015b9c40 104 SUPERFAMILY SSF54292 18 100 7.47E-24 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3942 877ceb6e56fed1c1c08cc54426e180ae 313 Gene3D G3DSA:3.40.50.150 82 285 3.2E-43 T 31-10-2018 Y89_3942 877ceb6e56fed1c1c08cc54426e180ae 313 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 25 310 5.0E-170 T 31-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y89_3942 877ceb6e56fed1c1c08cc54426e180ae 313 SUPERFAMILY SSF53335 4 287 1.09E-53 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0400 3226324bd30eb7e5b2aedf0586294de3 243 SUPERFAMILY SSF53955 55 233 4.22E-57 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_0400 3226324bd30eb7e5b2aedf0586294de3 243 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 15 235 41.903 T 31-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_0400 3226324bd30eb7e5b2aedf0586294de3 243 Pfam PF00912 Transglycosylase 65 229 5.5E-46 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_0400 3226324bd30eb7e5b2aedf0586294de3 243 Gene3D G3DSA:1.10.3810.10 56 235 1.0E-46 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_0400 3226324bd30eb7e5b2aedf0586294de3 243 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 15 234 2.4E-104 T 31-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_0158 cfea5c64a6e202f0fc4c70663990abea 171 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 4 145 2.1E-48 T 31-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 Y89_0158 cfea5c64a6e202f0fc4c70663990abea 171 SUPERFAMILY SSF52309 1 156 6.64E-45 T 31-10-2018 Y89_0158 cfea5c64a6e202f0fc4c70663990abea 171 Gene3D G3DSA:3.40.50.450 1 171 5.6E-53 T 31-10-2018 Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 28 260 2.3E-67 T 31-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 Gene3D G3DSA:3.40.50.620 6 211 2.1E-68 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 SUPERFAMILY SSF52402 5 209 1.65E-77 T 31-10-2018 Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 8 305 3.7E-159 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 3 305 56.959 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y89_4932 8d49de4ffc9ce6e1db406f1dd145acdb 305 PIRSF PIRSF002936 1 305 1.5E-155 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Y89_4288 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.5E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4288 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 2.5E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4288 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 2.5E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4288 74db2616a135e90083102c8074911692 199 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 2.5E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4288 74db2616a135e90083102c8074911692 199 Gene3D G3DSA:3.40.50.720 1 199 1.1E-36 T 31-10-2018 Y89_4288 74db2616a135e90083102c8074911692 199 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 172 3.4E-13 T 31-10-2018 Y89_4288 74db2616a135e90083102c8074911692 199 SUPERFAMILY SSF51735 2 197 5.54E-24 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4150 bb50db280a518f8a868ae1ddccfb1978 135 Gene3D G3DSA:3.30.300.20 3 135 5.1E-36 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_4150 bb50db280a518f8a868ae1ddccfb1978 135 SUPERFAMILY SSF82784 10 133 1.07E-35 T 31-10-2018 IPR036102 OsmC/Ohr superfamily Y89_4150 bb50db280a518f8a868ae1ddccfb1978 135 Pfam PF02566 OsmC-like protein 36 130 4.0E-20 T 31-10-2018 IPR003718 OsmC/Ohr family Y89_0632 a0702973eb84a741018495b77774c0d2 682 Pfam PF17289 Terminase RNaseH-like domain 424 581 2.8E-33 T 31-10-2018 IPR035421 Terminase, large subunit gp17-like Y89_0632 a0702973eb84a741018495b77774c0d2 682 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 6 63 2.3E-7 T 31-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 Y89_0632 a0702973eb84a741018495b77774c0d2 682 Gene3D G3DSA:3.40.50.300 115 318 3.0E-16 T 31-10-2018 Y89_0632 a0702973eb84a741018495b77774c0d2 682 Gene3D G3DSA:3.30.420.240 406 583 1.6E-9 T 31-10-2018 Y89_0632 a0702973eb84a741018495b77774c0d2 682 Pfam PF03237 Terminase-like family 174 397 5.4E-45 T 31-10-2018 IPR004921 Terminase large subunit, T4likevirus-type Y89_3134 a0701254dc2c49035673307863770362 812 Gene3D G3DSA:3.40.50.2000 469 797 0.0 T 31-10-2018 Y89_3134 a0701254dc2c49035673307863770362 812 Pfam PF00343 Carbohydrate phosphorylase 100 812 3.3E-296 T 31-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y89_3134 a0701254dc2c49035673307863770362 812 Gene3D G3DSA:3.40.50.2000 24 812 0.0 T 31-10-2018 Y89_3134 a0701254dc2c49035673307863770362 812 SUPERFAMILY SSF53756 11 811 6.99E-301 T 31-10-2018 Y89_3134 a0701254dc2c49035673307863770362 812 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 656 668 - T 31-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y89_3134 a0701254dc2c49035673307863770362 812 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 13 812 0.0 T 31-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y89_3134 a0701254dc2c49035673307863770362 812 PIRSF PIRSF000460 3 812 4.3E-216 T 31-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Y89_3497 b26cb2695f6933aad2eeff7a3978ca8a 341 Gene3D G3DSA:3.90.226.10 95 292 7.7E-42 T 31-10-2018 Y89_3497 b26cb2695f6933aad2eeff7a3978ca8a 341 Gene3D G3DSA:3.40.1750.20 192 256 7.7E-42 T 31-10-2018 Y89_3497 b26cb2695f6933aad2eeff7a3978ca8a 341 Pfam PF01343 Peptidase family S49 152 300 3.2E-44 T 31-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Y89_3497 b26cb2695f6933aad2eeff7a3978ca8a 341 SUPERFAMILY SSF52096 88 289 1.01E-27 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3497 b26cb2695f6933aad2eeff7a3978ca8a 341 Pfam PF08496 Peptidase family S49 N-terminal 2 148 1.1E-53 T 31-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 Gene3D G3DSA:3.30.565.10 301 450 6.5E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 SUPERFAMILY SSF47384 191 297 1.22E-5 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 9.5E-20 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 9.5E-20 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 445 9.5E-20 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 9.5E-20 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 297 9.0E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 SUPERFAMILY SSF55874 288 448 4.71E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 447 8.5E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 Gene3D G3DSA:1.10.287.130 174 293 2.0E-21 T 31-10-2018 Y89_2616 96edb0de8a4b8fe62254eb105983895b 458 SMART SM00387 339 448 1.3E-34 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3709 2c53d1e3602d98d00e2d722a5bb803e9 424 SUPERFAMILY SSF103473 19 412 2.75E-48 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3709 2c53d1e3602d98d00e2d722a5bb803e9 424 Pfam PF07690 Major Facilitator Superfamily 58 373 4.8E-20 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3709 2c53d1e3602d98d00e2d722a5bb803e9 424 TIGRFAM TIGR00896 CynX: cyanate transporter 42 391 2.8E-135 T 31-10-2018 IPR004747 Cyanate transport system protein GO:0016021 Y89_3709 2c53d1e3602d98d00e2d722a5bb803e9 424 Gene3D G3DSA:1.20.1250.20 37 222 8.2E-17 T 31-10-2018 Y89_3709 2c53d1e3602d98d00e2d722a5bb803e9 424 Gene3D G3DSA:1.20.1250.20 228 412 8.3E-18 T 31-10-2018 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 1.9E-71 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 Gene3D G3DSA:2.40.37.10 8 353 2.5E-140 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 5.2E-40 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 Gene3D G3DSA:3.20.20.10 10 216 2.5E-140 T 31-10-2018 IPR029066 PLP-binding barrel Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 SUPERFAMILY SSF50621 228 355 1.43E-43 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 SMART SM01005 232 355 2.6E-64 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 SUPERFAMILY SSF51419 8 233 4.58E-73 T 31-10-2018 IPR029066 PLP-binding barrel Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 TIGRFAM TIGR00492 alr: alanine racemase 3 354 8.4E-108 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 31-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 265 280 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 338 351 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 120 132 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 248 263 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 154 165 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 191 218 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 60 78 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 286 303 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 PRINTS PR00992 Alanine racemase signature 25 41 2.2E-62 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6040 1da503a9f5d5a501ae39f052505c19e5 357 Hamap MF_01201 Alanine racemase. 1 355 35.157 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_0660 685ebc3fd602a78c3aaeadb4d83ee3fa 640 SMART SM00763 19 376 6.7E-221 T 31-10-2018 IPR013153 PrkA AAA domain Y89_0660 685ebc3fd602a78c3aaeadb4d83ee3fa 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.1E-74 T 31-10-2018 IPR010650 PrkA C-terminal domain Y89_0660 685ebc3fd602a78c3aaeadb4d83ee3fa 640 Pfam PF08298 PrkA AAA domain 20 376 1.4E-180 T 31-10-2018 IPR013153 PrkA AAA domain Y89_0660 685ebc3fd602a78c3aaeadb4d83ee3fa 640 SUPERFAMILY SSF52540 75 343 1.05E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0660 685ebc3fd602a78c3aaeadb4d83ee3fa 640 PIRSF PIRSF000549 1 640 7.0E-289 T 31-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SMART SM00091 205 271 6.3E-6 T 31-10-2018 IPR000014 PAS domain Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Pfam PF00158 Sigma-54 interaction domain 333 499 3.8E-66 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 356 369 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SMART SM00382 352 497 6.6E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SUPERFAMILY SSF52540 333 564 1.69E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:3.40.50.2300 22 191 2.7E-48 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:1.10.8.60 504 569 6.6E-16 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SUPERFAMILY SSF46689 547 647 3.26E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SUPERFAMILY SSF55785 204 299 2.79E-12 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:3.30.450.20 195 305 2.2E-19 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Pfam PF08448 PAS fold 211 308 1.2E-7 T 31-10-2018 IPR013656 PAS fold-4 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:1.10.10.60 610 649 3.4E-11 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:3.40.50.10660 90 177 2.7E-48 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 SUPERFAMILY SSF159800 22 195 2.48E-40 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Gene3D G3DSA:3.40.50.300 322 503 1.9E-62 T 31-10-2018 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 547 556 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Pfam PF06506 Propionate catabolism activator 37 199 2.7E-41 T 31-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 204 313 2.8E-6 T 31-10-2018 IPR000014 PAS domain Y89_3058 6715b2199e847cefd181b826f8335c9a 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 615 632 1.8E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 632 650 1.8E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_3058 6715b2199e847cefd181b826f8335c9a 650 Pfam PF02954 Bacterial regulatory protein, Fis family 615 647 6.0E-11 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 Pfam PF13416 Bacterial extracellular solute-binding protein 38 317 3.1E-30 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 Gene3D G3DSA:3.40.190.10 25 320 9.9E-106 T 31-10-2018 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 Gene3D G3DSA:3.40.190.10 125 349 9.9E-106 T 31-10-2018 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PIRSF PIRSF019574 1 353 4.1E-99 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 298 324 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 85 98 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 144 158 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 116 132 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 69 83 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 253 272 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 6.9E-41 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1416 b967fc293f592dbf0c9627bcc3ca9db4 353 SUPERFAMILY SSF53850 21 351 2.4E-83 T 31-10-2018 Y89_1976 26e9713ec4adde923c798dd755da30f3 443 Hamap MF_01213 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 1 440 52.737 T 31-10-2018 IPR023024 dNTP triphosphohydrolase, type 3 GO:0016793 Y89_1976 26e9713ec4adde923c798dd755da30f3 443 SUPERFAMILY SSF109604 21 434 2.93E-64 T 31-10-2018 Y89_1976 26e9713ec4adde923c798dd755da30f3 443 SMART SM00471 57 255 7.6E-10 T 31-10-2018 IPR003607 HD/PDEase domain Y89_1976 26e9713ec4adde923c798dd755da30f3 443 Gene3D G3DSA:1.10.3550.10 112 429 1.6E-163 T 31-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal Y89_1976 26e9713ec4adde923c798dd755da30f3 443 Gene3D G3DSA:1.10.3210.10 26 238 1.6E-163 T 31-10-2018 Y89_1976 26e9713ec4adde923c798dd755da30f3 443 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 436 4.7E-98 T 31-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 Y89_1976 26e9713ec4adde923c798dd755da30f3 443 Pfam PF01966 HD domain 61 125 9.2E-9 T 31-10-2018 IPR006674 HD domain Y89_1976 26e9713ec4adde923c798dd755da30f3 443 Gene3D G3DSA:1.10.3410.10 239 351 1.6E-163 T 31-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 SUPERFAMILY SSF111331 4 291 2.4E-66 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 5 295 1.4E-144 T 31-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 Gene3D G3DSA:3.40.50.10330 24 284 2.2E-77 T 31-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 5 296 44.089 T 31-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 Gene3D G3DSA:2.60.200.40 122 281 2.2E-77 T 31-10-2018 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 8 290 1.2E-59 T 31-10-2018 IPR005218 Diacylglycerol/lipid kinase Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 Pfam PF00781 Diacylglycerol kinase catalytic domain 12 125 4.8E-25 T 31-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Y89_1996 9bf894b1dea938571efff9e5ebe49a6a 302 SMART SM00046 6 125 4.9E-14 T 31-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Y89_3213 d27e06988835bcddd6efa429af42c276 393 SUPERFAMILY SSF53383 6 376 4.08E-97 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3213 d27e06988835bcddd6efa429af42c276 393 PIRSF PIRSF005572 3 380 5.1E-108 T 31-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Y89_3213 d27e06988835bcddd6efa429af42c276 393 Gene3D G3DSA:3.40.640.10 17 262 1.0E-132 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3213 d27e06988835bcddd6efa429af42c276 393 Pfam PF00266 Aminotransferase class-V 7 367 1.2E-72 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_3213 d27e06988835bcddd6efa429af42c276 393 Gene3D G3DSA:3.90.1150.10 7 374 1.0E-132 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_3213 d27e06988835bcddd6efa429af42c276 393 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y89_2671 3f60db454586883fe5615237b69c4ee8 484 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 168 399 1.5E-41 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_2671 3f60db454586883fe5615237b69c4ee8 484 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 162 471 4.2E-44 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_2671 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:2.40.420.20 160 463 3.7E-79 T 31-10-2018 Y89_2671 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:1.10.287.470 219 290 3.7E-79 T 31-10-2018 Y89_2671 3f60db454586883fe5615237b69c4ee8 484 SUPERFAMILY SSF111369 181 404 1.7E-22 T 31-10-2018 Y89_2671 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:2.40.30.170 171 406 3.7E-79 T 31-10-2018 Y89_2671 3f60db454586883fe5615237b69c4ee8 484 Gene3D G3DSA:2.40.50.100 185 326 3.7E-79 T 31-10-2018 Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 SUPERFAMILY SSF55326 8 171 2.09E-51 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 SUPERFAMILY SSF56042 172 338 3.59E-62 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 165 3.1E-15 T 31-10-2018 IPR016188 PurM-like, N-terminal domain Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Gene3D G3DSA:3.30.1330.10 7 171 5.3E-66 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 337 6.9E-39 T 31-10-2018 IPR010918 PurM-like, C-terminal domain Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 336 2.4E-142 T 31-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 347 45.693 T 31-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Y89_4413 1f2f7889bdd1da7611f55a0ebf0ff0c0 353 Gene3D G3DSA:3.90.650.10 172 347 1.5E-68 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 SUPERFAMILY SSF81665 100 335 6.54E-12 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 Gene3D G3DSA:2.70.150.20 142 254 4.6E-31 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 Pfam PF00122 E1-E2 ATPase 149 321 4.9E-48 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 99 640 6.4E-151 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 Gene3D G3DSA:3.40.1110.10 352 463 2.9E-61 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 343 349 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 SUPERFAMILY SSF81653 156 249 2.75E-22 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 532 551 8.3E-17 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 199 213 8.3E-17 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 341 355 8.3E-17 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 456 467 8.3E-17 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 568 8.3E-17 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 Pfam PF00702 haloacid dehalogenase-like hydrolase 340 544 4.8E-28 T 31-10-2018 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 Gene3D G3DSA:3.40.50.1000 322 584 2.9E-61 T 31-10-2018 IPR023214 HAD superfamily Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 SUPERFAMILY SSF56784 340 635 1.46E-40 T 31-10-2018 IPR036412 HAD-like superfamily Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 99 638 2.3E-161 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_2763 88f4c5fe81116db34bdc4129185f385c 661 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 123 613 1.9E-59 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_5394 a3d1037e62e49be08076901e127af33c 393 SMART SM00471 173 324 8.6E-7 T 31-10-2018 IPR003607 HD/PDEase domain Y89_5394 a3d1037e62e49be08076901e127af33c 393 SMART SM00448 11 124 3.2E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5394 a3d1037e62e49be08076901e127af33c 393 Pfam PF13487 HD domain 236 305 5.6E-17 T 31-10-2018 Y89_5394 a3d1037e62e49be08076901e127af33c 393 Pfam PF00072 Response regulator receiver domain 13 124 7.5E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5394 a3d1037e62e49be08076901e127af33c 393 SUPERFAMILY SSF52172 13 160 1.2E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5394 a3d1037e62e49be08076901e127af33c 393 Gene3D G3DSA:1.10.3210.10 151 368 1.7E-70 T 31-10-2018 Y89_5394 a3d1037e62e49be08076901e127af33c 393 SUPERFAMILY SSF109604 153 353 1.82E-26 T 31-10-2018 Y89_5394 a3d1037e62e49be08076901e127af33c 393 Gene3D G3DSA:3.40.50.2300 4 142 1.1E-37 T 31-10-2018 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 SUPERFAMILY SSF46785 1 84 9.54E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4041 303808c7075252c6082e1bc8fd3de523 286 SUPERFAMILY SSF53850 87 284 9.15E-33 T 31-10-2018 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 Pfam PF03466 LysR substrate binding domain 87 284 2.4E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4041 303808c7075252c6082e1bc8fd3de523 286 Gene3D G3DSA:1.10.10.10 1 92 3.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4041 303808c7075252c6082e1bc8fd3de523 286 Gene3D G3DSA:3.40.190.290 93 286 6.4E-38 T 31-10-2018 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 284 3.6E-122 T 31-10-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type Y89_4041 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4041 303808c7075252c6082e1bc8fd3de523 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 3.1E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4998 98e3a60e40da23bfb4a9c4b86464b978 299 Gene3D G3DSA:2.60.120.330 43 227 1.2E-43 T 31-10-2018 IPR027443 Isopenicillin N synthase-like Y89_4998 98e3a60e40da23bfb4a9c4b86464b978 299 SUPERFAMILY SSF51197 98 239 3.3E-19 T 31-10-2018 Y89_4998 98e3a60e40da23bfb4a9c4b86464b978 299 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 2.3E-48 T 31-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 TIGRFAM TIGR00417 speE: spermidine synthase 4 275 9.8E-107 T 31-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 Pfam PF17284 Spermidine synthase tetramerisation domain 10 54 6.8E-15 T 31-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 SUPERFAMILY SSF53335 3 281 2.26E-89 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 2 281 39.997 T 31-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 Gene3D G3DSA:2.30.140.10 1 51 1.3E-21 T 31-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 Gene3D G3DSA:3.40.50.150 52 284 1.7E-78 T 31-10-2018 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 Pfam PF01564 Spermine/spermidine synthase domain 57 236 6.7E-63 T 31-10-2018 Y89_3646 67096b0a38e9b108e53e09100a4c6013 286 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 78 91 - T 31-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Gene3D G3DSA:3.30.465.10 103 227 6.2E-33 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 PIRSF PIRSF000136 32 463 1.5E-89 T 31-10-2018 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Gene3D G3DSA:1.10.45.10 425 462 2.4E-7 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Pfam PF01565 FAD binding domain 58 183 1.9E-22 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Pfam PF04030 D-arabinono-1,4-lactone oxidase 208 458 3.7E-68 T 31-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Gene3D G3DSA:3.30.43.10 37 100 2.7E-19 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 41 462 8.9E-141 T 31-10-2018 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 SUPERFAMILY SSF56176 37 211 9.35E-41 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_6065 2fa5d5d2c0b7a98bbab960710f16131d 464 Gene3D G3DSA:3.30.70.2520 332 424 1.0E-23 T 31-10-2018 Y89_1983 5d489701dda6be1ff276b0e0f47f7d61 310 SUPERFAMILY SSF50475 174 272 2.38E-7 T 31-10-2018 Y89_1983 5d489701dda6be1ff276b0e0f47f7d61 310 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 37 123 1.0E-9 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_1983 5d489701dda6be1ff276b0e0f47f7d61 310 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 167 262 5.9E-13 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_1983 5d489701dda6be1ff276b0e0f47f7d61 310 Gene3D G3DSA:2.30.110.10 160 268 5.3E-10 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_0558 e92ea31502fd991031bba3d9b38f75eb 341 Pfam PF04536 TPM domain 31 154 3.0E-40 T 31-10-2018 IPR007621 TPM domain Y89_0558 e92ea31502fd991031bba3d9b38f75eb 341 Gene3D G3DSA:3.10.310.50 19 161 5.3E-51 T 31-10-2018 Y89_3579 80575ee234200efaddd5d024b43d1167 165 SUPERFAMILY SSF52402 1 156 2.93E-26 T 31-10-2018 Y89_3579 80575ee234200efaddd5d024b43d1167 165 Pfam PF00582 Universal stress protein family 1 156 4.9E-26 T 31-10-2018 IPR006016 UspA Y89_3579 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 134 156 7.1E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_3579 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 2 20 7.1E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_3579 80575ee234200efaddd5d024b43d1167 165 PRINTS PR01438 Universal stress protein signature 116 128 7.1E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_3579 80575ee234200efaddd5d024b43d1167 165 Gene3D G3DSA:3.40.50.620 1 157 6.9E-27 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_0235 d163896112186bce4b32a42eb1e39403 401 Gene3D G3DSA:3.40.47.10 7 282 7.2E-160 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0235 d163896112186bce4b32a42eb1e39403 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 399 1.9E-138 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 SUPERFAMILY SSF53901 4 276 8.52E-88 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0235 d163896112186bce4b32a42eb1e39403 401 SUPERFAMILY SSF53901 277 400 3.12E-45 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0235 d163896112186bce4b32a42eb1e39403 401 PIRSF PIRSF000429 1 401 7.0E-136 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 Pfam PF00108 Thiolase, N-terminal domain 5 268 7.0E-79 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 Gene3D G3DSA:3.40.47.10 142 397 7.2E-160 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0235 d163896112186bce4b32a42eb1e39403 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 6.9E-43 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_0235 d163896112186bce4b32a42eb1e39403 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 1.1E-223 T 31-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 Y89_2198 a43d79b38c8da2b6d7879a5e19ce8c7c 296 Pfam PF05673 Protein of unknown function (DUF815) 34 289 3.8E-104 T 31-10-2018 IPR008533 Domain of unknown function DUF815 Y89_2198 a43d79b38c8da2b6d7879a5e19ce8c7c 296 SUPERFAMILY SSF52540 54 189 2.06E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2198 a43d79b38c8da2b6d7879a5e19ce8c7c 296 Gene3D G3DSA:3.40.50.300 57 193 5.6E-10 T 31-10-2018 Y89_4247 be7949b424a085aaf2350b5eddfc8f89 398 Gene3D G3DSA:3.30.70.270 211 389 1.7E-61 T 31-10-2018 Y89_4247 be7949b424a085aaf2350b5eddfc8f89 398 SMART SM00267 215 388 3.1E-66 T 31-10-2018 IPR000160 GGDEF domain Y89_4247 be7949b424a085aaf2350b5eddfc8f89 398 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 384 1.6E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_4247 be7949b424a085aaf2350b5eddfc8f89 398 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 387 1.2E-52 T 31-10-2018 IPR000160 GGDEF domain Y89_4247 be7949b424a085aaf2350b5eddfc8f89 398 SUPERFAMILY SSF55073 231 387 1.8E-50 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_2735 90a9cc9b0523a228fded26123845de5d 820 Pfam PF07715 TonB-dependent Receptor Plug Domain 173 277 2.7E-21 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2735 90a9cc9b0523a228fded26123845de5d 820 Gene3D G3DSA:2.170.130.10 150 287 7.2E-37 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2735 90a9cc9b0523a228fded26123845de5d 820 Gene3D G3DSA:3.55.50.30 57 127 2.8E-24 T 31-10-2018 Y89_2735 90a9cc9b0523a228fded26123845de5d 820 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 174 820 2.7E-147 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2735 90a9cc9b0523a228fded26123845de5d 820 Pfam PF00593 TonB dependent receptor 356 819 2.4E-70 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2735 90a9cc9b0523a228fded26123845de5d 820 Gene3D G3DSA:2.40.170.20 288 820 4.4E-149 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2735 90a9cc9b0523a228fded26123845de5d 820 SUPERFAMILY SSF56935 135 820 1.83E-145 T 31-10-2018 Y89_2735 90a9cc9b0523a228fded26123845de5d 820 SMART SM00965 78 129 2.9E-9 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_1303 3802ccb3d77506d1b6d5cb7034cd69ea 179 SUPERFAMILY SSF52980 2 177 2.95E-62 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y89_1303 3802ccb3d77506d1b6d5cb7034cd69ea 179 SMART SM01322 1 174 1.0E-93 T 31-10-2018 IPR009822 YaeQ Y89_1303 3802ccb3d77506d1b6d5cb7034cd69ea 179 Pfam PF07152 YaeQ protein 1 171 4.4E-62 T 31-10-2018 IPR009822 YaeQ Y89_1303 3802ccb3d77506d1b6d5cb7034cd69ea 179 Gene3D G3DSA:3.10.640.10 1 177 5.5E-67 T 31-10-2018 IPR038590 YaeQ superfamily Y89_1303 3802ccb3d77506d1b6d5cb7034cd69ea 179 PIRSF PIRSF011484 1 178 9.1E-52 T 31-10-2018 IPR009822 YaeQ Y89_0405 683aa43b852e6dc3700a487ba6d374b7 448 Pfam PF07044 Protein of unknown function (DUF1329) 82 444 1.4E-138 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 Pfam PF00072 Response regulator receiver domain 4 102 3.1E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 SUPERFAMILY SSF52738 151 334 1.96E-61 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 PIRSF PIRSF000876 1 335 6.1E-98 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 SUPERFAMILY SSF52172 2 104 1.42E-20 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 Gene3D G3DSA:3.40.50.12740 1 126 5.1E-22 T 31-10-2018 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 Gene3D G3DSA:3.40.50.180 145 335 9.7E-63 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 335 32.552 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 SMART SM00448 1 118 3.6E-9 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1323 4b90b4ba6d6527a6615579b5bb6488fd 335 Pfam PF01339 CheB methylesterase 154 330 2.0E-57 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 1.3E-148 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 93 115 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 214 233 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 186 204 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 353 375 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 412 432 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 PRINTS PR00175 Sodium/alanine symporter signature 309 327 1.8E-53 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_2658 abaef4753220bd396a5ccf13084d9c4f 449 Pfam PF01235 Sodium:alanine symporter family 56 447 2.2E-141 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_5084 f9ec59b7e6cdb676035b0f12dc319f74 374 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 55 159 2.2E-44 T 31-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 Y89_5084 f9ec59b7e6cdb676035b0f12dc319f74 374 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 292 370 4.2E-21 T 31-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal Y89_6352 f9ec59b7e6cdb676035b0f12dc319f74 374 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 55 159 2.2E-44 T 31-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 Y89_6352 f9ec59b7e6cdb676035b0f12dc319f74 374 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 292 370 4.2E-21 T 31-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal Y89_5697 c69e112c281014cbd34053bc42e25c06 425 PIRSF PIRSF001434 1 424 1.7E-135 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 420 1.4E-143 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 421 1.0E-207 T 31-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 Gene3D G3DSA:3.90.1150.10 289 425 1.1E-52 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 Gene3D G3DSA:3.40.640.10 1 285 1.1E-106 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5697 c69e112c281014cbd34053bc42e25c06 425 SUPERFAMILY SSF53383 1 421 4.47E-134 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 Gene3D G3DSA:3.90.960.10 13 153 4.1E-27 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 SUPERFAMILY SSF109604 180 452 4.08E-61 T 31-10-2018 Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 SUPERFAMILY SSF55826 19 145 5.76E-13 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 Gene3D G3DSA:1.10.3210.10 156 465 3.8E-97 T 31-10-2018 Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 Pfam PF08668 HDOD domain 195 395 2.4E-45 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 Pfam PF04073 Aminoacyl-tRNA editing domain 30 142 2.8E-16 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_6084 cb8db8cc0cb6c846083a9167ecc5c863 469 PIRSF PIRSF036888 1 466 4.5E-281 T 31-10-2018 IPR014627 Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 Gene3D G3DSA:1.20.1560.10 15 312 5.8E-15 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 SUPERFAMILY SSF52540 325 560 4.62E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 SMART SM00382 353 539 1.0E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 Pfam PF00005 ABC transporter 344 493 2.7E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 ProSitePatterns PS00211 ABC transporters family signature. 465 479 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 Gene3D G3DSA:3.40.50.300 322 572 1.5E-68 T 31-10-2018 Y89_0800 4b1e338a1584dbc217cdf8fd27238e50 574 SUPERFAMILY SSF90123 16 318 6.41E-26 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0714 1751a23f17cae850b318b512b296c81e 1204 Pfam PF09327 Domain of unknown function (DUF1983) 1068 1146 2.5E-23 T 31-10-2018 IPR015406 Domain of unknown function DUF1983 Y89_0714 1751a23f17cae850b318b512b296c81e 1204 Pfam PF13550 Putative phage tail protein 339 505 6.2E-26 T 31-10-2018 IPR032876 Tip attachment protein J Y89_0714 1751a23f17cae850b318b512b296c81e 1204 Gene3D G3DSA:2.60.40.10 613 709 1.3E-5 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0714 1751a23f17cae850b318b512b296c81e 1204 SUPERFAMILY SSF49265 622 710 1.06E-5 T 31-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 137 2.1E-7 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 3 447 3.5E-210 T 31-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 SUPERFAMILY SSF52540 3 445 2.83E-88 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 447 42.096 T 31-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 SMART SM00382 48 332 2.6E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 8.1E-40 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 SMART SM01086 335 433 3.6E-15 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_5726 a16ca15dcd72cff649a2985e172610e0 447 Gene3D G3DSA:1.10.8.60 335 444 2.3E-35 T 31-10-2018 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 Pfam PF00230 Major intrinsic protein 2 221 4.7E-46 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 35.103 T 31-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 Gene3D G3DSA:1.20.1080.10 1 228 7.9E-84 T 31-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 ProSitePatterns PS00221 MIP family signature. 60 68 - T 31-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 2.1E-57 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 SUPERFAMILY SSF81338 1 225 6.54E-66 T 31-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 165 187 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 42 66 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 2 21 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 79 98 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 135 153 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_0990 950eb9d20e6f0d18fd2ae4854d4190d0 229 PRINTS PR00783 Major intrinsic protein family signature 204 224 1.2E-50 T 31-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 Y89_3845 a8f3a1c2daabeec968d9599383441cca 332 SUPERFAMILY SSF53850 22 329 3.76E-83 T 31-10-2018 Y89_3845 a8f3a1c2daabeec968d9599383441cca 332 Gene3D G3DSA:3.40.190.10 29 297 3.4E-124 T 31-10-2018 Y89_3845 a8f3a1c2daabeec968d9599383441cca 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 328 6.4E-133 T 31-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Y89_3845 a8f3a1c2daabeec968d9599383441cca 332 Gene3D G3DSA:3.40.190.10 117 327 3.4E-124 T 31-10-2018 Y89_3845 a8f3a1c2daabeec968d9599383441cca 332 Pfam PF13531 Bacterial extracellular solute-binding protein 31 280 7.7E-41 T 31-10-2018 Y89_3176 4cf02e8708d0877ce331a50fe53ab9ad 318 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 153 165 - T 31-10-2018 IPR033140 Lipase, GDXG, putative serine active site Y89_3176 4cf02e8708d0877ce331a50fe53ab9ad 318 Pfam PF07859 alpha/beta hydrolase fold 85 285 8.5E-59 T 31-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 Y89_3176 4cf02e8708d0877ce331a50fe53ab9ad 318 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 85 101 - T 31-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 Y89_3176 4cf02e8708d0877ce331a50fe53ab9ad 318 SUPERFAMILY SSF53474 55 305 6.23E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3176 4cf02e8708d0877ce331a50fe53ab9ad 318 Gene3D G3DSA:3.40.50.1820 40 313 2.2E-79 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 SMART SM00507 556 611 1.2E-6 T 31-10-2018 IPR003615 HNH nuclease Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 SUPERFAMILY SSF69369 251 513 1.7E-56 T 31-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 Gene3D G3DSA:3.90.540.10 485 618 1.9E-55 T 31-10-2018 IPR037146 Colicin/pyocin, DNase domain superfamily GO:0004519 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 SUPERFAMILY SSF54060 484 614 1.29E-53 T 31-10-2018 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 513 534 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 377 395 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 596 615 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 270 290 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 558 575 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 326 349 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 291 309 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 243 264 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 480 499 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 PRINTS PR01300 Pyocin S killer protein signature 535 554 6.5E-137 T 31-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 Y89_4202 5e2efe43c0f4416bba58bb8ec657d592 618 Pfam PF06958 S-type Pyocin 344 483 1.8E-35 T 31-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 286 6.3E-32 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 498 1.8E-21 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Gene3D G3DSA:1.10.1040.50 192 495 2.3E-97 T 31-10-2018 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 SUPERFAMILY SSF48179 188 293 3.57E-33 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 5.9E-57 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Gene3D G3DSA:3.30.750.190 292 412 2.3E-97 T 31-10-2018 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 SUPERFAMILY SSF51735 9 188 3.85E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 Gene3D G3DSA:3.40.50.720 5 191 4.0E-61 T 31-10-2018 Y89_1436 ad0790366b5f24cf440dab8d10b8f966 510 SUPERFAMILY SSF48179 415 498 1.45E-20 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3742 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 Pfam PF03061 Thioesterase superfamily 52 127 3.0E-10 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_3742 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 112 2.4E-12 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_3742 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 SUPERFAMILY SSF54637 1 139 6.87E-27 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_3742 aa2ad95cd9a5c1f07f9e67c0aef317a7 157 Gene3D G3DSA:3.10.129.10 1 144 1.0E-61 T 31-10-2018 Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 Gene3D G3DSA:1.20.1260.10 23 177 2.8E-55 T 31-10-2018 IPR012347 Ferritin-like Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 SUPERFAMILY SSF47240 31 175 5.02E-38 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 PRINTS PR00601 Bacterioferritin signature 73 93 2.1E-6 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 PRINTS PR00601 Bacterioferritin signature 32 51 2.1E-6 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 PRINTS PR00601 Bacterioferritin signature 163 177 2.1E-6 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 Pfam PF00210 Ferritin-like domain 39 176 3.4E-28 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y89_5549 2cb8171d4a0f53d8c587f09fb9f950e7 177 PIRSF PIRSF018063 12 177 8.1E-65 T 31-10-2018 IPR014490 DNA-binding protein from starved cells-like Y89_2607 27b0490b470228bec3dde738605fa33c 196 Pfam PF02525 Flavodoxin-like fold 2 188 4.7E-35 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_2607 27b0490b470228bec3dde738605fa33c 196 SUPERFAMILY SSF52218 1 193 9.92E-40 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_2607 27b0490b470228bec3dde738605fa33c 196 Gene3D G3DSA:3.40.50.360 1 192 4.8E-56 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 Gene3D G3DSA:1.10.287.130 179 286 2.7E-16 T 31-10-2018 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 SUPERFAMILY SSF55874 292 432 2.36E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 SMART SM00387 326 434 1.3E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 Gene3D G3DSA:3.30.565.10 287 433 5.1E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 SMART SM00304 175 227 1.4E-5 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 433 1.3E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 SUPERFAMILY SSF47384 212 282 4.71E-9 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 2.9E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 375 2.9E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 389 2.9E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0921 41e05ee4b97dff91d1b02ea43fa8045f 434 SMART SM00388 228 286 0.0079 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2552 bebb4ae4f9c03522498713a000d390cd 407 Pfam PF07690 Major Facilitator Superfamily 17 347 2.0E-40 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2552 bebb4ae4f9c03522498713a000d390cd 407 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 12 375 7.3E-70 T 31-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 Y89_2552 bebb4ae4f9c03522498713a000d390cd 407 Gene3D G3DSA:1.20.1720.10 10 392 4.1E-85 T 31-10-2018 Y89_2552 bebb4ae4f9c03522498713a000d390cd 407 SUPERFAMILY SSF103473 7 394 1.31E-52 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3664 193f1ef1a21c341bcfa0f6313ea233ba 242 SMART SM00331 13 242 3.1E-27 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3664 193f1ef1a21c341bcfa0f6313ea233ba 242 SMART SM00332 4 240 9.7E-29 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3664 193f1ef1a21c341bcfa0f6313ea233ba 242 Gene3D G3DSA:3.60.40.10 1 242 9.1E-60 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3664 193f1ef1a21c341bcfa0f6313ea233ba 242 SUPERFAMILY SSF81606 7 241 2.75E-60 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3664 193f1ef1a21c341bcfa0f6313ea233ba 242 Pfam PF13672 Protein phosphatase 2C 18 202 3.9E-15 T 31-10-2018 Y89_3089 f0b39f008114edd0d755ba5a7384b439 114 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 88 108 4.3E-11 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_3089 f0b39f008114edd0d755ba5a7384b439 114 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 44 64 9.3E-10 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_3089 f0b39f008114edd0d755ba5a7384b439 114 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 66 86 2.9E-10 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_3089 f0b39f008114edd0d755ba5a7384b439 114 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 23 42 3.4E-7 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_5997 87930897459df4b9ed6114f5eee338d0 336 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_5997 87930897459df4b9ed6114f5eee338d0 336 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 326 1.7E-29 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_5997 87930897459df4b9ed6114f5eee338d0 336 SUPERFAMILY SSF51735 103 295 1.14E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5997 87930897459df4b9ed6114f5eee338d0 336 SUPERFAMILY SSF52283 1 137 4.68E-33 T 31-10-2018 Y89_5997 87930897459df4b9ed6114f5eee338d0 336 Gene3D G3DSA:3.40.50.720 98 300 2.5E-109 T 31-10-2018 Y89_5997 87930897459df4b9ed6114f5eee338d0 336 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 294 7.1E-49 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_5997 87930897459df4b9ed6114f5eee338d0 336 Gene3D G3DSA:3.40.50.720 6 321 2.5E-109 T 31-10-2018 Y89_1012 4ded22c348d9b3b047c87fb00ab5e786 197 SUPERFAMILY SSF88697 1 188 6.46E-45 T 31-10-2018 IPR015947 PUA-like superfamily Y89_1012 4ded22c348d9b3b047c87fb00ab5e786 197 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 2 188 8.6E-20 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_1012 4ded22c348d9b3b047c87fb00ab5e786 197 Gene3D G3DSA:2.30.130.40 1 111 4.0E-37 T 31-10-2018 Y89_1012 4ded22c348d9b3b047c87fb00ab5e786 197 SMART SM00464 2 192 4.1E-9 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 ProSitePatterns PS00543 HlyD family secretion proteins signature. 396 418 - T 31-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Gene3D G3DSA:2.40.30.170 321 406 7.2E-11 T 31-10-2018 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 296 317 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 353 376 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 63 83 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 329 353 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 21 44 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 396 411 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 411 431 4.3E-62 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Pfam PF00529 HlyD membrane-fusion protein of T1SS 23 388 2.0E-20 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 12 431 3.4E-121 T 31-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Gene3D G3DSA:1.10.287.470 85 116 1.2E-7 T 31-10-2018 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Gene3D G3DSA:1.10.287.470 247 283 7.2E-11 T 31-10-2018 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Gene3D G3DSA:2.40.50.100 54 84 1.2E-7 T 31-10-2018 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 Gene3D G3DSA:2.40.50.100 284 320 7.2E-11 T 31-10-2018 Y89_4104 5d107405ea3df0a4b5c4e40cf9fc1763 432 SUPERFAMILY SSF111369 54 111 1.05E-5 T 31-10-2018 Y89_2273 6254d8eb5766cc47d494be25ee825e84 114 SUPERFAMILY SSF51182 16 113 1.69E-20 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2273 6254d8eb5766cc47d494be25ee825e84 114 Gene3D G3DSA:2.60.120.10 5 114 5.3E-28 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2273 6254d8eb5766cc47d494be25ee825e84 114 Pfam PF05899 Protein of unknown function (DUF861) 39 111 6.2E-28 T 31-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_3205 2a0f05b90693a8faae9eae13d41e23b6 880 Pfam PF00593 TonB dependent receptor 366 879 2.1E-54 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3205 2a0f05b90693a8faae9eae13d41e23b6 880 Gene3D G3DSA:2.170.130.10 40 175 1.6E-36 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3205 2a0f05b90693a8faae9eae13d41e23b6 880 SUPERFAMILY SSF56935 43 880 4.27E-107 T 31-10-2018 Y89_3205 2a0f05b90693a8faae9eae13d41e23b6 880 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 170 1.9E-24 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 Gene3D G3DSA:1.20.1640.10 594 788 8.4E-15 T 31-10-2018 Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 Pfam PF03176 MMPL family 479 777 2.1E-27 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 SUPERFAMILY SSF82866 579 779 4.84E-36 T 31-10-2018 Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 Pfam PF02460 Patched family 178 308 9.9E-5 T 31-10-2018 IPR003392 Protein patched/dispatched GO:0016021 Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 SUPERFAMILY SSF82866 207 395 2.88E-25 T 31-10-2018 Y89_1940 53e65436d92bb1e4f3880462b4470ffa 793 Gene3D G3DSA:1.20.1640.10 224 408 3.0E-5 T 31-10-2018 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 SMART SM00388 238 300 5.6E-4 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 SMART SM00387 343 448 1.0E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 SUPERFAMILY SSF47384 221 292 1.37E-6 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 392 6.2E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 6.2E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 445 1.6E-7 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 SUPERFAMILY SSF55874 308 445 2.23E-26 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 Gene3D G3DSA:1.10.287.130 190 300 1.4E-9 T 31-10-2018 Y89_4173 f1016aa9a8f1ad42db733ab51b452e23 448 Gene3D G3DSA:3.30.565.10 305 447 5.1E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:3.30.70.1400 51 137 3.3E-81 T 31-10-2018 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 PIRSF PIRSF006487 1 358 5.4E-80 T 31-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 253 2.9E-82 T 31-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 355 43.61 T 31-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:4.10.1250.10 231 274 2.8E-25 T 31-10-2018 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 SUPERFAMILY SSF103025 4 276 4.55E-87 T 31-10-2018 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 354 3.0E-125 T 31-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:2.40.30.110 277 360 3.7E-31 T 31-10-2018 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 SUPERFAMILY SSF101790 269 357 9.81E-26 T 31-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Gene3D G3DSA:3.30.1360.120 6 230 3.3E-81 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Y89_5902 b40abae7356c57afd07a93c81b54c425 360 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 261 349 1.1E-19 T 31-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y89_0133 ec181c893c4c612a8c89fbe4a7af21e8 136 Pfam PF06355 Aegerolysin 4 134 3.4E-44 T 31-10-2018 IPR009413 Hemolysin, aegerolysin type GO:0019836 Y89_0133 ec181c893c4c612a8c89fbe4a7af21e8 136 PIRSF PIRSF007951 1 136 4.8E-61 T 31-10-2018 IPR009413 Hemolysin, aegerolysin type GO:0019836 Y89_0133 ec181c893c4c612a8c89fbe4a7af21e8 136 Gene3D G3DSA:2.60.270.50 1 134 9.6E-40 T 31-10-2018 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF51445 25 321 7.0E-47 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_2954 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:2.60.40.10 341 427 6.5E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_2954 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF49265 342 427 4.43E-11 T 31-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 SUPERFAMILY SSF51055 438 481 5.1E-14 T 31-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:3.20.20.80 6 334 3.1E-85 T 31-10-2018 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 Pfam PF00704 Glycosyl hydrolases family 18 29 311 2.7E-27 T 31-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 SMART SM00060 343 417 3.6E-6 T 31-10-2018 IPR003961 Fibronectin type III GO:0005515 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 ProSitePatterns PS01095 Chitinases family 18 active site. 135 143 - T 31-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 Gene3D G3DSA:2.10.10.20 438 480 6.0E-16 T 31-10-2018 Y89_2954 6665d5e885674ab10eaee5752476e78c 483 SMART SM00495 436 482 2.7E-4 T 31-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 Gene3D G3DSA:3.20.20.70 2 313 3.3E-107 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 SUPERFAMILY SSF51269 305 359 6.15E-12 T 31-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 SUPERFAMILY SSF51569 6 317 1.37E-81 T 31-10-2018 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 Gene3D G3DSA:3.90.1210.10 314 361 1.5E-9 T 31-10-2018 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 TIGRFAM TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase 9 358 2.2E-140 T 31-10-2018 IPR020007 N-acetylneuraminate synthase KEGG: 00520+2.5.1.101|MetaCyc: PWY-6749|MetaCyc: PWY-7131 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 Pfam PF08666 SAF domain 310 359 9.1E-8 T 31-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y89_1860 f2ea82628807915ca0c6dfb1c7766d61 361 Pfam PF03102 NeuB family 29 290 1.4E-94 T 31-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 Gene3D G3DSA:1.10.10.10 1 91 3.9E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1574 4d804b8f3289eee34275510bbabbe433 297 Gene3D G3DSA:3.40.190.290 92 294 1.2E-47 T 31-10-2018 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 SUPERFAMILY SSF53850 90 290 9.78E-41 T 31-10-2018 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.7E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.7E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.7E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1574 4d804b8f3289eee34275510bbabbe433 297 Pfam PF03466 LysR substrate binding domain 87 290 3.5E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1574 4d804b8f3289eee34275510bbabbe433 297 SUPERFAMILY SSF46785 1 86 3.76E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1574 4d804b8f3289eee34275510bbabbe433 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.1E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1097 f13ae523469464ad25a21c1c7a98560e 393 Pfam PF07690 Major Facilitator Superfamily 21 234 3.9E-27 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1097 f13ae523469464ad25a21c1c7a98560e 393 Gene3D G3DSA:1.20.1250.20 201 388 3.7E-14 T 31-10-2018 Y89_1097 f13ae523469464ad25a21c1c7a98560e 393 SUPERFAMILY SSF103473 7 387 6.02E-50 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1097 f13ae523469464ad25a21c1c7a98560e 393 Gene3D G3DSA:1.20.1250.20 5 189 1.2E-27 T 31-10-2018 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 428 4.1E-155 T 31-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:2.120.10.30 162 432 1.0E-87 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 427 45.104 T 31-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 236 271 7.8E-13 T 31-10-2018 IPR011659 WD40-like Beta Propeller Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 279 314 1.9E-13 T 31-10-2018 IPR011659 WD40-like Beta Propeller Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 200 227 9.6E-7 T 31-10-2018 IPR011659 WD40-like Beta Propeller Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF07676 WD40-like Beta Propeller Repeat 372 400 0.043 T 31-10-2018 IPR011659 WD40-like Beta Propeller Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Gene3D G3DSA:3.40.50.10070 24 161 6.3E-43 T 31-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 Pfam PF04052 TolB amino-terminal domain 25 126 6.2E-30 T 31-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 SUPERFAMILY SSF69304 153 429 2.22E-54 T 31-10-2018 Y89_4383 0fc8f5568ecfc9aa4a711002589b18fe 432 SUPERFAMILY SSF52964 29 158 2.75E-39 T 31-10-2018 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 SMART SM00342 207 290 6.5E-31 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 1.8E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 1.8E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 SUPERFAMILY SSF46689 243 292 6.72E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 Gene3D G3DSA:1.10.10.60 189 295 1.0E-32 T 31-10-2018 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 Pfam PF12833 Helix-turn-helix domain 213 291 4.2E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1125 3349d623d3e4a29f7d10c0fbea2ef39b 296 SUPERFAMILY SSF46689 194 241 2.73E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 SUPERFAMILY SSF51735 614 963 9.67E-33 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0946 2cc31b22836e3a5f1555032c82782385 991 ProSitePatterns PS00455 Putative AMP-binding domain signature. 146 157 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Gene3D G3DSA:3.40.50.720 590 988 3.9E-78 T 31-10-2018 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Pfam PF07993 Male sterility protein 623 866 4.8E-50 T 31-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Pfam PF00501 AMP-binding enzyme 10 395 9.1E-82 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 SUPERFAMILY SSF47336 510 576 3.66E-14 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Gene3D G3DSA:1.10.1200.10 505 581 1.8E-19 T 31-10-2018 IPR036736 ACP-like superfamily Y89_0946 2cc31b22836e3a5f1555032c82782385 991 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 31 419 1.0E-110 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Pfam PF00550 Phosphopantetheine attachment site 514 573 8.0E-10 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_0946 2cc31b22836e3a5f1555032c82782385 991 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 620 989 2.6E-120 T 31-10-2018 IPR010080 Thioester reductase-like domain Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Gene3D G3DSA:3.40.50.12780 1 389 3.9E-114 T 31-10-2018 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 SUPERFAMILY SSF56801 6 522 1.7E-137 T 31-10-2018 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 SMART SM00823 Phosphopantetheine attachment site 510 579 0.0012 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 ProSitePatterns PS00012 Phosphopantetheine attachment site. 534 549 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Gene3D G3DSA:3.30.300.30 390 504 4.2E-33 T 31-10-2018 Y89_0946 2cc31b22836e3a5f1555032c82782385 991 Pfam PF13193 AMP-binding enzyme C-terminal domain 404 482 7.7E-12 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 Pfam PF03466 LysR substrate binding domain 89 297 1.4E-32 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 Gene3D G3DSA:1.10.10.10 1 89 5.7E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 SUPERFAMILY SSF46785 2 112 3.13E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.8E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.8E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.8E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 SUPERFAMILY SSF53850 91 301 1.01E-29 T 31-10-2018 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 Gene3D G3DSA:3.40.190.10 167 266 7.1E-33 T 31-10-2018 Y89_4620 bdb9986f5dbd9d959f12a7133a410385 304 Gene3D G3DSA:3.40.190.10 94 288 7.1E-33 T 31-10-2018 Y89_4916 782f88f8389411e71ec36512086af93c 135 Pfam PF04386 Stringent starvation protein B 4 135 4.1E-35 T 31-10-2018 IPR007481 Stringent starvation protein B Y89_4916 782f88f8389411e71ec36512086af93c 135 Gene3D G3DSA:2.30.30.220 1 120 1.7E-48 T 31-10-2018 IPR036760 SspB-like superfamily Y89_4916 782f88f8389411e71ec36512086af93c 135 PIRSF PIRSF005276 1 135 2.8E-55 T 31-10-2018 IPR007481 Stringent starvation protein B Y89_4916 782f88f8389411e71ec36512086af93c 135 SUPERFAMILY SSF101738 1 114 1.31E-47 T 31-10-2018 IPR036760 SspB-like superfamily Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 141 162 - T 31-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 206 56.677 T 31-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 Gene3D G3DSA:3.40.190.10 93 174 3.1E-67 T 31-10-2018 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 6.0E-53 T 31-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 Pfam PF01634 ATP phosphoribosyltransferase 51 202 1.5E-45 T 31-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 Gene3D G3DSA:3.40.190.10 3 196 3.1E-67 T 31-10-2018 Y89_4938 2f6af095806ce47f2cdf246f116c50a8 211 SUPERFAMILY SSF53850 1 206 3.26E-63 T 31-10-2018 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 SMART SM00226 1 149 7.1E-47 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 80 95 5.4E-23 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 5.4E-23 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 121 136 5.4E-23 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 5.4E-23 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 147 2.6E-40 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 Gene3D G3DSA:3.40.50.2300 1 153 3.0E-55 T 31-10-2018 Y89_2042 a597c9f80fb3d4503e23c0d1ddf5f915 154 SUPERFAMILY SSF52788 1 147 2.09E-47 T 31-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 SUPERFAMILY SSF88659 114 175 3.27E-12 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 Gene3D G3DSA:1.10.1740.10 3 85 3.3E-7 T 31-10-2018 Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 SUPERFAMILY SSF88946 8 108 6.67E-11 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 Pfam PF04542 Sigma-70 region 2 18 88 4.8E-6 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 Gene3D G3DSA:1.10.10.10 99 176 8.8E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 Pfam PF08281 Sigma-70, region 4 120 170 1.0E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_5565 1989de8a123bdaf25294b3ed58e432f3 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 168 4.9E-15 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_0094 1505677bb7b9248868b4ab143d1a7cfb 498 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 493 1.1E-190 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_0094 1505677bb7b9248868b4ab143d1a7cfb 498 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 493 3.3E-219 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 3.5E-38 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 3.5E-38 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 3.5E-38 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 3.5E-38 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 SUPERFAMILY SSF53383 1 398 7.77E-116 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 Pfam PF00155 Aminotransferase class I and II 30 394 1.1E-77 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 Gene3D G3DSA:3.40.640.10 62 302 4.7E-162 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1880 540e0b355a09b4695e6a799aaf1998e9 398 Gene3D G3DSA:3.90.1150.10 7 394 4.7E-162 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1122 311b6b37d81924b1d96825796f593e85 784 Gene3D G3DSA:2.40.170.20 267 784 5.6E-138 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1122 311b6b37d81924b1d96825796f593e85 784 Pfam PF07715 TonB-dependent Receptor Plug Domain 141 254 1.3E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_1122 311b6b37d81924b1d96825796f593e85 784 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 767 784 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_1122 311b6b37d81924b1d96825796f593e85 784 Pfam PF00593 TonB dependent receptor 344 781 5.2E-52 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_1122 311b6b37d81924b1d96825796f593e85 784 SUPERFAMILY SSF56935 126 784 5.09E-119 T 31-10-2018 Y89_1122 311b6b37d81924b1d96825796f593e85 784 Pfam PF07660 Secretin and TonB N terminus short domain 64 113 2.2E-9 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_1122 311b6b37d81924b1d96825796f593e85 784 Gene3D G3DSA:3.55.50.30 42 113 2.4E-23 T 31-10-2018 Y89_1122 311b6b37d81924b1d96825796f593e85 784 SMART SM00965 63 114 9.5E-14 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_1122 311b6b37d81924b1d96825796f593e85 784 Gene3D G3DSA:2.170.130.10 138 263 3.5E-29 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_1122 311b6b37d81924b1d96825796f593e85 784 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 142 784 6.5E-125 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 SUPERFAMILY SSF52540 74 361 3.81E-69 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 SMART SM00487 25 223 1.2E-57 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Pfam PF00271 Helicase conserved C-terminal domain 236 340 4.1E-30 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Pfam PF00270 DEAD/DEAH box helicase 31 193 6.3E-46 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Gene3D G3DSA:3.40.50.300 1 212 1.4E-72 T 31-10-2018 Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 553 41.807 T 31-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 SMART SM00490 259 340 7.1E-33 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Gene3D G3DSA:3.40.50.300 215 423 4.4E-48 T 31-10-2018 Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Gene3D G3DSA:3.30.70.330 484 554 4.3E-13 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Y89_2181 de6e6f069c4374046d13f83eca0d27b0 556 Pfam PF03880 DbpA RNA binding domain 483 551 4.7E-19 T 31-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 SUPERFAMILY SSF53850 49 243 2.06E-36 T 31-10-2018 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 2 289 8.4E-100 T 31-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 277 9.7E-71 T 31-10-2018 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 Gene3D G3DSA:1.20.58.90 275 334 8.4E-33 T 31-10-2018 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 Gene3D G3DSA:3.40.190.10 31 259 5.7E-97 T 31-10-2018 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 7 252 5.2E-82 T 31-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Y89_1626 09d8e158d92a6d316bad5ae91cef9b07 334 Gene3D G3DSA:3.40.190.10 115 227 5.7E-97 T 31-10-2018 Y89_4609 d0174c97871f316c995d38b21e97059c 231 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 227 41.65 T 31-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 SMART SM00987 56 216 1.2E-38 T 31-10-2018 Y89_4609 d0174c97871f316c995d38b21e97059c 231 SUPERFAMILY SSF52141 9 228 1.09E-95 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 Gene3D G3DSA:3.40.470.10 1 230 1.6E-104 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 SMART SM00986 56 216 1.2E-38 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 Pfam PF03167 Uracil DNA glycosylase superfamily 60 215 6.2E-25 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 64 73 - T 31-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_4609 d0174c97871f316c995d38b21e97059c 231 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 12 220 4.6E-84 T 31-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 30 505 6.2E-163 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 Gene3D G3DSA:3.55.50.30 17 101 1.5E-26 T 31-10-2018 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 Gene3D G3DSA:3.30.1370.120 174 273 1.1E-7 T 31-10-2018 IPR038591 NolW-like superfamily Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 Pfam PF00263 Bacterial type II and III secretion system protein 345 505 9.7E-41 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 450 483 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 Pfam PF03958 Bacterial type II/III secretion system short domain 178 272 1.0E-14 T 31-10-2018 IPR005644 NolW-like Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 Gene3D G3DSA:3.30.1370.120 102 172 4.7E-13 T 31-10-2018 IPR038591 NolW-like superfamily Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 392 407 7.7E-36 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 190 207 7.7E-36 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 483 502 7.7E-36 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 275 295 7.7E-36 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_3617 b3cc2007b1bb3f2ea00fdf6936e3e736 600 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 358 377 7.7E-36 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 Y89_0360 9251c75ec8c0c653be90aac72eead842 251 Pfam PF05742 Transport and Golgi organisation 2 1 234 6.3E-57 T 31-10-2018 IPR008551 Transport and Golgi organisation protein 2 Y89_0026 e0adbf0c836c3cd09f6fb730e80ecdfb 341 SMART SM00257 30 78 0.0023 T 31-10-2018 IPR018392 LysM domain Y89_0026 e0adbf0c836c3cd09f6fb730e80ecdfb 341 SUPERFAMILY SSF54106 30 77 3.4E-7 T 31-10-2018 Y89_0026 e0adbf0c836c3cd09f6fb730e80ecdfb 341 Gene3D G3DSA:3.10.350.10 30 76 1.4E-14 T 31-10-2018 IPR036779 LysM domain superfamily Y89_0026 e0adbf0c836c3cd09f6fb730e80ecdfb 341 Pfam PF01476 LysM domain 31 76 5.6E-13 T 31-10-2018 IPR018392 LysM domain Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 Gene3D G3DSA:3.40.1010.10 17 133 3.6E-44 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 Gene3D G3DSA:3.30.950.10 134 266 1.0E-53 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 20 230 2.4E-50 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 18 253 4.5E-94 T 31-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 SUPERFAMILY SSF53790 14 263 1.57E-82 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 98 131 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_0531 9c9335f0b7fa6a42bfbd3db7b756b1df 279 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 23 37 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_3040 014f9c6be9c037ca9d1110e1c21123dc 455 Gene3D G3DSA:3.50.50.60 41 401 2.5E-61 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3040 014f9c6be9c037ca9d1110e1c21123dc 455 Gene3D G3DSA:3.30.9.10 134 360 2.5E-61 T 31-10-2018 Y89_3040 014f9c6be9c037ca9d1110e1c21123dc 455 Pfam PF01266 FAD dependent oxidoreductase 41 400 1.5E-52 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3040 014f9c6be9c037ca9d1110e1c21123dc 455 SUPERFAMILY SSF51905 39 427 1.24E-37 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 909 1017 9.3E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SUPERFAMILY SSF55874 854 1017 9.43E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SMART SM00388 798 864 1.4E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SUPERFAMILY SSF55785 629 751 1.9E-9 T 31-10-2018 IPR035965 PAS domain superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Gene3D G3DSA:1.10.287.130 762 862 1.2E-18 T 31-10-2018 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SMART SM00387 908 1018 2.0E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Gene3D G3DSA:3.30.450.20 626 758 2.6E-11 T 31-10-2018 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Gene3D G3DSA:3.40.50.2300 1035 1159 1.5E-18 T 31-10-2018 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Gene3D G3DSA:1.20.1730.10 34 480 1.7E-17 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 978 996 6.3E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1002 1015 6.3E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 943 957 6.3E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 961 971 6.3E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Pfam PF12860 PAS fold 644 758 2.1E-45 T 31-10-2018 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SUPERFAMILY SSF47384 781 865 3.53E-16 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SMART SM00448 1039 1152 9.5E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Pfam PF00512 His Kinase A (phospho-acceptor) domain 798 864 2.0E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1741 7f912f09e99e454c508cd079506b8524 1159 SUPERFAMILY SSF52172 1037 1157 1.71E-20 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Gene3D G3DSA:3.30.565.10 873 1021 1.9E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1741 7f912f09e99e454c508cd079506b8524 1159 Pfam PF00072 Response regulator receiver domain 1041 1151 5.5E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 29 376 7.9E-82 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 Gene3D G3DSA:3.90.1150.10 276 378 7.2E-16 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 PIRSF PIRSF000390 14 378 1.1E-85 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 Gene3D G3DSA:3.40.640.10 4 274 1.0E-84 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 TIGRFAM TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family 19 376 8.6E-160 T 31-10-2018 IPR026385 Aminotransferase, LLPSF_NHT_00031 family Y89_1858 5b433a9f6c8bfd7f906b9b3c01417d56 383 SUPERFAMILY SSF53383 16 377 2.42E-91 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4353 90a6d83c3ea9c739564b513fee210330 352 Pfam PF02445 Quinolinate synthetase A protein 34 339 2.9E-104 T 31-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 116 339 4.7E-97 T 31-10-2018 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 30 341 5.5E-111 T 31-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 34 321 4.7E-97 T 31-10-2018 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 346 70.748 T 31-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 Gene3D G3DSA:3.40.50.10800 201 296 4.7E-97 T 31-10-2018 Y89_4353 90a6d83c3ea9c739564b513fee210330 352 SUPERFAMILY SSF142754 31 340 1.29E-109 T 31-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y89_5115 b1d64f673a1a9e4d659b76c8a6bef925 248 Pfam PF14348 Domain of unknown function (DUF4400) 51 245 9.7E-71 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_5115 b1d64f673a1a9e4d659b76c8a6bef925 248 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 15 248 3.7E-104 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_6385 b1d64f673a1a9e4d659b76c8a6bef925 248 Pfam PF14348 Domain of unknown function (DUF4400) 51 245 9.7E-71 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_6385 b1d64f673a1a9e4d659b76c8a6bef925 248 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 15 248 3.7E-104 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 SUPERFAMILY SSF46689 17 91 1.03E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 Gene3D G3DSA:1.10.357.10 26 222 4.1E-62 T 31-10-2018 Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 SUPERFAMILY SSF48498 96 221 7.12E-34 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 43 2.0E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 2.0E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0250 a1629104a9461dbcacb76e4732cf65a6 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 76 6.2E-14 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1826 71c02ee7fa5fe8331e7af1cff528a6ea 420 SUPERFAMILY SSF53850 24 418 3.62E-64 T 31-10-2018 Y89_1826 71c02ee7fa5fe8331e7af1cff528a6ea 420 Gene3D G3DSA:3.40.190.10 143 400 2.3E-165 T 31-10-2018 Y89_1826 71c02ee7fa5fe8331e7af1cff528a6ea 420 Pfam PF01547 Bacterial extracellular solute-binding protein 43 322 1.9E-26 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_1826 71c02ee7fa5fe8331e7af1cff528a6ea 420 Gene3D G3DSA:3.40.190.10 28 375 2.3E-165 T 31-10-2018 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Gene3D G3DSA:1.20.58.410 1 51 5.1E-7 T 31-10-2018 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Gene3D G3DSA:3.30.160.20 161 256 1.2E-95 T 31-10-2018 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 298 5.1E-142 T 31-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Pfam PF00472 RF-1 domain 163 272 8.3E-42 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 180 196 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 SMART SM00937 20 130 1.2E-53 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Gene3D G3DSA:3.30.70.1660 65 292 1.2E-95 T 31-10-2018 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 SUPERFAMILY SSF75620 2 297 3.53E-123 T 31-10-2018 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 4 300 31.97 T 31-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 Y89_1325 f5fd1f6498222e8df37df0a8999b5a62 300 Pfam PF03462 PCRF domain 2 155 2.7E-46 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 SUPERFAMILY SSF53732 439 535 5.36E-6 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 PIRSF PIRSF036630 3 580 1.3E-294 T 31-10-2018 IPR012047 Aconitase X Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 SUPERFAMILY SSF52016 7 114 8.63E-34 T 31-10-2018 Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 Gene3D G3DSA:3.30.499.10 436 560 1.5E-6 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 Pfam PF04412 Protein of unknown function (DUF521) 161 561 4.4E-147 T 31-10-2018 IPR007506 Aconitase X catalytic domain, putative Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 Pfam PF01989 Protein of unknown function DUF126 28 103 2.5E-29 T 31-10-2018 IPR002840 Aconitase X swivel domain, putative Y89_4092 fe097f552fc9c912d1e6a7684b7e7fb8 580 Gene3D G3DSA:3.50.30.10 7 134 2.2E-32 T 31-10-2018 Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 SUPERFAMILY SSF46785 273 370 1.49E-6 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 1.9E-32 T 31-10-2018 IPR025230 Domain of unknown function DUF4172 Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 Pfam PF02661 Fic/DOC family 114 227 6.2E-15 T 31-10-2018 IPR003812 Fido domain Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 SUPERFAMILY SSF140931 101 297 1.03E-35 T 31-10-2018 IPR036597 Fido-like domain superfamily Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 Gene3D G3DSA:1.10.10.10 278 373 1.6E-8 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0595 6039078f98d233fcfe89ffc01b93503b 373 Gene3D G3DSA:1.10.3290.10 46 277 1.0E-35 T 31-10-2018 IPR036597 Fido-like domain superfamily Y89_4066 3401976e612652d2249428de91807fe2 606 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 2.3E-19 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4066 3401976e612652d2249428de91807fe2 606 SUPERFAMILY SSF47203 287 474 1.43E-43 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4066 3401976e612652d2249428de91807fe2 606 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 493 598 2.4E-22 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_4066 3401976e612652d2249428de91807fe2 606 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 454 6.1E-19 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4066 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:2.40.110.10 161 286 1.2E-28 T 31-10-2018 Y89_4066 3401976e612652d2249428de91807fe2 606 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 41 157 3.8E-15 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4066 3401976e612652d2249428de91807fe2 606 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 7.1E-8 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_4066 3401976e612652d2249428de91807fe2 606 SUPERFAMILY SSF56645 38 279 3.27E-60 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4066 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:1.20.140.10 287 459 3.0E-40 T 31-10-2018 Y89_4066 3401976e612652d2249428de91807fe2 606 Gene3D G3DSA:1.10.540.10 16 159 6.2E-19 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2928 7108f39ef25e9ad820113787423822cf 469 PIRSF PIRSF000337 2 448 2.2E-146 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_2928 7108f39ef25e9ad820113787423822cf 469 SUPERFAMILY SSF51679 1 440 1.7E-128 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2928 7108f39ef25e9ad820113787423822cf 469 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 2.5E-171 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_2928 7108f39ef25e9ad820113787423822cf 469 Pfam PF00296 Luciferase-like monooxygenase 27 389 6.8E-53 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_2928 7108f39ef25e9ad820113787423822cf 469 Gene3D G3DSA:3.20.20.30 1 457 3.4E-147 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2736 26f2b456a35a2c9ea96bfea4b1c88db9 382 Pfam PF03929 PepSY-associated TM region 8 373 1.6E-56 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 SUPERFAMILY SSF52540 389 701 2.52E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Gene3D G3DSA:1.10.10.10 732 797 1.6E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 SUPERFAMILY SSF46785 736 799 1.29E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Gene3D G3DSA:3.40.50.300 413 714 6.5E-122 T 31-10-2018 Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Gene3D G3DSA:3.30.980.40 308 412 2.5E-37 T 31-10-2018 Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Pfam PF09397 Ftsk gamma domain 738 798 1.8E-26 T 31-10-2018 IPR018541 FtsK gamma domain Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Pfam PF01580 FtsK/SpoIIIE family 418 628 3.6E-63 T 31-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 193 2.2E-40 T 31-10-2018 IPR025199 DNA translocase FtsK, 4TM region Y89_2473 92e34ad165c7c7b7e66f8e995523f16a 804 SMART SM00843 736 801 7.7E-38 T 31-10-2018 IPR018541 FtsK gamma domain Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 5.1E-5 T 31-10-2018 Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 3.7E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 1.2E-55 T 31-10-2018 Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 SUPERFAMILY SSF51735 4 250 2.07E-72 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.7E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 2.7E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.7E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4878 b48c6dbddae43cf2cfb1b53eb240f19d 252 Gene3D G3DSA:3.40.50.720 1 252 1.8E-74 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:2.70.20.10 218 478 5.6E-162 T 31-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00437 277 532 5.6E-119 T 31-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF08272 Topoisomerase I zinc-ribbon-like 760 795 1.7E-11 T 31-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF08272 Topoisomerase I zinc-ribbon-like 826 865 6.7E-20 T 31-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00436 138 226 1.5E-50 T 31-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 747 809 4.7E-26 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 583 639 6.9E-6 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.30.65.10 700 746 6.3E-8 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:1.10.290.10 285 409 5.6E-162 T 31-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 811 867 1.07E-23 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 314 328 - T 31-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:3.40.50.140 1 168 4.6E-67 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01131 DNA topoisomerase 162 569 2.3E-128 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 111 124 3.6E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 319 328 3.6E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 495 509 3.6E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 196 214 3.6E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 3.6E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 702 745 4.76E-9 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SMART SM00493 3 137 7.2E-31 T 31-10-2018 IPR006171 TOPRIM domain Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:2.20.25.10 810 868 5.8E-29 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 636 8.4E-250 T 31-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF56712 3 612 4.32E-202 T 31-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Gene3D G3DSA:1.10.460.10 170 576 5.6E-162 T 31-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 734 59.6 T 31-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 602 625 2.5E-4 T 31-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 712 747 1.3E-11 T 31-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 SUPERFAMILY SSF57783 746 806 1.7E-16 T 31-10-2018 Y89_2008 766c40ef3a3dc288f6b4f68dbaa5c473 868 Pfam PF01751 Toprim domain 5 147 2.3E-32 T 31-10-2018 IPR006171 TOPRIM domain Y89_1000 64fdc12cebc166786afac7ede6a6333d 464 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 13 442 2.2E-219 T 31-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y89_1000 64fdc12cebc166786afac7ede6a6333d 464 PIRSF PIRSF018788 2 461 3.0E-240 T 31-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y89_1000 64fdc12cebc166786afac7ede6a6333d 464 Gene3D G3DSA:2.30.170.30 3 55 6.5E-23 T 31-10-2018 Y89_1000 64fdc12cebc166786afac7ede6a6333d 464 Gene3D G3DSA:1.10.220.70 56 142 3.1E-33 T 31-10-2018 Y89_1000 64fdc12cebc166786afac7ede6a6333d 464 Gene3D G3DSA:3.20.20.70 143 452 3.3E-149 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2189 900f7bff1c76bcfd75df70c047941846 218 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 216 3.3E-86 T 31-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 Y89_2189 900f7bff1c76bcfd75df70c047941846 218 Gene3D G3DSA:3.40.50.150 16 218 2.2E-65 T 31-10-2018 Y89_2189 900f7bff1c76bcfd75df70c047941846 218 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 217 40.204 T 31-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Y89_2189 900f7bff1c76bcfd75df70c047941846 218 PIRSF PIRSF023956 1 218 9.0E-77 T 31-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Y89_2189 900f7bff1c76bcfd75df70c047941846 218 SUPERFAMILY SSF53335 1 216 9.0E-59 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2189 900f7bff1c76bcfd75df70c047941846 218 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 217 5.4E-87 T 31-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Pfam PF02954 Bacterial regulatory protein, Fis family 595 636 6.5E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 619 639 1.6E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 602 619 1.6E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 SUPERFAMILY SSF55785 235 311 1.57E-8 T 31-10-2018 IPR035965 PAS domain superfamily Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Gene3D G3DSA:3.30.450.40 21 209 1.7E-47 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Pfam PF01590 GAF domain 73 194 2.5E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 SUPERFAMILY SSF46689 542 638 9.86E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Gene3D G3DSA:3.30.450.20 231 317 2.0E-6 T 31-10-2018 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 SUPERFAMILY SSF52540 346 571 3.88E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 SMART SM00382 353 496 1.2E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Gene3D G3DSA:1.10.8.60 505 577 6.7E-12 T 31-10-2018 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Gene3D G3DSA:3.40.50.300 332 504 4.4E-54 T 31-10-2018 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 420 435 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 357 370 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 SUPERFAMILY SSF55781 68 199 3.3E-9 T 31-10-2018 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Pfam PF00158 Sigma-54 interaction domain 340 498 6.0E-59 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_1003 f2ea032d16626ff280d75ff9c82279cb 643 Gene3D G3DSA:1.10.10.60 593 640 1.3E-12 T 31-10-2018 Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 Gene3D G3DSA:3.30.1330.10 1 160 7.9E-48 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 Hamap MF_00625 Selenide, water dikinase [selD]. 4 344 44.911 T 31-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 SUPERFAMILY SSF55326 6 158 1.7E-38 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 Gene3D G3DSA:3.90.650.10 163 343 2.4E-52 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 Pfam PF02769 AIR synthase related protein, C-terminal domain 168 343 6.6E-33 T 31-10-2018 IPR010918 PurM-like, C-terminal domain Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 TIGRFAM TIGR00476 selD: selenide, water dikinase 6 311 3.4E-134 T 31-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 PIRSF PIRSF036407 1 344 4.1E-113 T 31-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 156 1.7E-19 T 31-10-2018 IPR016188 PurM-like, N-terminal domain Y89_3693 1e4f24254ce16f88d0a55cc62d5ca431 344 SUPERFAMILY SSF56042 163 339 3.59E-50 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_2591 7fe3da2c62b94032565816766863093b 140 SUPERFAMILY SSF69118 8 136 3.99E-23 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_2591 7fe3da2c62b94032565816766863093b 140 Pfam PF02627 Carboxymuconolactone decarboxylase family 15 91 8.2E-7 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_2591 7fe3da2c62b94032565816766863093b 140 Gene3D G3DSA:1.20.1290.10 4 138 1.6E-21 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_5058 762d1b5fb5c9d16af50c7e52e81edb6f 235 Pfam PF13392 HNH endonuclease 158 201 1.1E-15 T 31-10-2018 IPR003615 HNH nuclease Y89_5058 762d1b5fb5c9d16af50c7e52e81edb6f 235 SUPERFAMILY SSF54060 132 204 3.06E-12 T 31-10-2018 Y89_5058 762d1b5fb5c9d16af50c7e52e81edb6f 235 Gene3D G3DSA:3.90.75.20 110 207 3.9E-8 T 31-10-2018 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:3.40.190.10 164 268 3.2E-60 T 31-10-2018 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:3.40.190.10 93 286 3.2E-60 T 31-10-2018 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 SUPERFAMILY SSF46785 3 86 1.33E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3503 c84962243b3db8a604a5da388cd4c462 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.7E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 Gene3D G3DSA:1.10.10.10 1 86 3.8E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3503 c84962243b3db8a604a5da388cd4c462 301 SUPERFAMILY SSF53850 90 295 5.16E-38 T 31-10-2018 Y89_3503 c84962243b3db8a604a5da388cd4c462 301 Pfam PF03466 LysR substrate binding domain 88 293 1.2E-41 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 Gene3D G3DSA:3.40.710.10 16 301 3.9E-64 T 31-10-2018 Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 SUPERFAMILY SSF56601 8 276 2.3E-60 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 260 1.4E-88 T 31-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 1.3E-13 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 142 155 1.3E-13 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_4490 a39a474e2cdf06567ad4e11bf991575c 310 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 115 132 1.3E-13 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.8E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 2.1E-58 T 31-10-2018 Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 SUPERFAMILY SSF51735 5 251 1.07E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 Gene3D G3DSA:3.40.50.720 1 266 6.2E-83 T 31-10-2018 Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.8E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.8E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2584 de347ae651ae22403d8fb690e6a37dc4 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 6.8E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0055 cb6e1bc12d904c8da00ecba7150073fc 228 Gene3D G3DSA:3.40.50.10610 67 228 3.1E-5 T 31-10-2018 Y89_0055 cb6e1bc12d904c8da00ecba7150073fc 228 SUPERFAMILY SSF52964 49 146 6.02E-10 T 31-10-2018 Y89_0055 cb6e1bc12d904c8da00ecba7150073fc 228 Pfam PF03783 Curli production assembly/transport component CsgG 48 225 1.2E-30 T 31-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 Y89_1230 aab8c8c5d3f3bae6db62a6a3cede1e56 195 Pfam PF06078 Bacterial protein of unknown function (DUF937) 37 177 1.1E-18 T 31-10-2018 IPR009282 Protein of unknown function DUF937 Y89_1230 aab8c8c5d3f3bae6db62a6a3cede1e56 195 Gene3D G3DSA:1.10.10.690 67 193 1.6E-31 T 31-10-2018 IPR027405 YidB-like Y89_1230 aab8c8c5d3f3bae6db62a6a3cede1e56 195 SUPERFAMILY SSF140804 73 184 3.79E-29 T 31-10-2018 IPR027405 YidB-like Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 SUPERFAMILY SSF53383 22 425 1.93E-141 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 Gene3D G3DSA:3.40.640.10 60 319 2.2E-166 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 Gene3D G3DSA:3.90.1150.10 25 419 2.2E-166 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 10 421 1.5E-163 T 31-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 Pfam PF00202 Aminotransferase class-III 18 421 1.2E-137 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 PIRSF PIRSF000521 25 129 0.0028 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 PIRSF PIRSF000521 172 425 2.9E-41 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0284 7653efa4556acdbc1f90ce932b60ab1b 426 PIRSF PIRSF000521 124 157 0.37 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 234 367 2.3E-9 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Gene3D G3DSA:3.40.50.300 183 373 1.2E-63 T 31-10-2018 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Pfam PF07724 AAA domain (Cdc48 subfamily) 631 797 3.4E-38 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Gene3D G3DSA:1.10.1780.10 1 161 1.5E-44 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 804 878 1.1E-12 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SMART SM01086 804 896 5.4E-11 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 325 337 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SMART SM00382 632 775 2.5E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SMART SM00382 229 370 4.8E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Gene3D G3DSA:1.10.8.60 804 900 2.1E-9 T 31-10-2018 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 4.6E-30 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 728 4.6E-30 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 743 757 4.6E-30 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 636 654 4.6E-30 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Gene3D G3DSA:3.40.50.300 585 802 1.9E-65 T 31-10-2018 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 888 0.0 T 31-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SUPERFAMILY SSF52540 190 519 7.89E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 Gene3D G3DSA:3.40.50.300 375 579 6.5E-45 T 31-10-2018 Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SUPERFAMILY SSF52540 581 878 5.57E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0100 28c9cbd9fdad18604013d4c9bed00ff2 902 SUPERFAMILY SSF81923 12 133 1.41E-17 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 Gene3D G3DSA:3.40.50.720 3 323 2.0E-129 T 31-10-2018 Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 SUPERFAMILY SSF51735 1 335 9.26E-90 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.0E-100 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 Gene3D G3DSA:3.90.25.10 201 332 2.0E-129 T 31-10-2018 Y89_5847 1e46e9042f3690ad17b473c7a8db2e8c 352 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 337 4.4E-151 T 31-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 Gene3D G3DSA:1.10.1740.10 3 78 2.2E-7 T 31-10-2018 Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 Pfam PF04542 Sigma-70 region 2 15 82 6.3E-10 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 SUPERFAMILY SSF88946 11 97 1.02E-12 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 SUPERFAMILY SSF88659 106 169 6.17E-10 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 Gene3D G3DSA:1.10.10.10 90 171 1.7E-5 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 170 7.4E-13 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3998 cb12129adcc51872714406ee8e6da2d6 414 Pfam PF08281 Sigma-70, region 4 116 167 3.1E-7 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_5784 ff243ebbd7736c58a76bf06e16a5bb89 464 Pfam PF13163 Protein of unknown function (DUF3999) 31 456 1.8E-149 T 31-10-2018 IPR025060 Protein of unknown function DUF3999 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SMART SM00958 228 358 1.7E-74 T 31-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF81767 227 368 1.57E-40 T 31-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF07516 SecA Wing and Scaffold domain 617 830 3.1E-67 T 31-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.10.450.50 843 915 1.0E-8 T 31-10-2018 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 818 0.0 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF52540 5 415 3.27E-88 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 170 190 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 63 87 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 376 393 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 101 115 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 117 127 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 339 361 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 PRINTS PR00906 SecA protein signature 413 426 1.7E-70 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.40.50.300 417 620 2.7E-90 T 31-10-2018 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.8E-34 T 31-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF52540 416 618 4.9E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:1.10.3060.10 621 833 8.0E-76 T 31-10-2018 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF07517 SecA DEAD-like domain 6 402 2.5E-133 T 31-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SMART SM00957 6 402 0.0 T 31-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 ProSitePatterns PS01312 SecA family signature. 500 515 - T 31-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.40.50.300 22 415 2.5E-175 T 31-10-2018 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Gene3D G3DSA:3.90.1440.10 229 368 2.5E-175 T 31-10-2018 Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Pfam PF02810 SEC-C motif 896 914 2.1E-10 T 31-10-2018 IPR004027 SEC-C motif Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 SUPERFAMILY SSF81886 620 904 1.19E-81 T 31-10-2018 IPR036266 SecA, Wing/Scaffold superfamily Y89_4892 fee3b0f55a421eff887964b9aecc6c6a 916 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.073 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 Gene3D G3DSA:1.10.10.10 3 88 7.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 Pfam PF03466 LysR substrate binding domain 88 294 1.9E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 Gene3D G3DSA:3.40.190.290 91 296 9.1E-53 T 31-10-2018 Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 SUPERFAMILY SSF46785 4 88 3.34E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 9.8E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0193 8efad9346bf9092739a6d91cd6df716f 310 SUPERFAMILY SSF53850 88 298 5.07E-38 T 31-10-2018 Y89_3251 e473546ded9f3de4c207f344c1d15aca 182 Pfam PF11985 Protein of unknown function (DUF3486) 1 180 5.6E-38 T 31-10-2018 IPR021874 Bacteriophage Mu, Gp27 Y89_4799 157725f751454ca11ae9737cff042b70 283 SUPERFAMILY SSF53328 87 283 1.96E-62 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_4799 157725f751454ca11ae9737cff042b70 283 SUPERFAMILY SSF55021 3 84 1.75E-14 T 31-10-2018 Y89_4799 157725f751454ca11ae9737cff042b70 283 PIRSF PIRSF036480 1 283 1.9E-119 T 31-10-2018 Y89_4799 157725f751454ca11ae9737cff042b70 283 Gene3D G3DSA:3.40.50.170 87 283 3.2E-79 T 31-10-2018 Y89_4799 157725f751454ca11ae9737cff042b70 283 Pfam PF00551 Formyl transferase 87 261 8.0E-39 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_4799 157725f751454ca11ae9737cff042b70 283 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 282 2.6E-110 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 Gene3D G3DSA:3.30.70.260 1 86 1.9E-27 T 31-10-2018 Y89_4799 157725f751454ca11ae9737cff042b70 283 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 282 49.118 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_4799 157725f751454ca11ae9737cff042b70 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 8.8E-64 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 3.0E-47 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 SUPERFAMILY SSF52096 5 314 6.89E-104 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 6.7E-157 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 Gene3D G3DSA:3.90.226.10 1 315 9.2E-118 T 31-10-2018 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 1.0E-63 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_1387 5bbfc275d31b61b8ac37e6ee917eb749 316 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.5 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SUPERFAMILY SSF55781 195 335 1.92E-19 T 31-10-2018 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Pfam PF13426 PAS domain 358 459 7.6E-15 T 31-10-2018 IPR000014 PAS domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Gene3D G3DSA:3.30.450.40 166 342 1.4E-19 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SUPERFAMILY SSF55785 352 458 3.22E-22 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00091 346 412 3.8E-6 T 31-10-2018 IPR000014 PAS domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00091 24 87 59.0 T 31-10-2018 IPR000014 PAS domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00052 639 885 2.7E-123 T 31-10-2018 IPR001633 EAL domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Gene3D G3DSA:3.30.450.20 344 469 2.2E-28 T 31-10-2018 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Pfam PF00563 EAL domain 645 880 2.1E-78 T 31-10-2018 IPR001633 EAL domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 346 466 1.1E-17 T 31-10-2018 IPR000014 PAS domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 467 628 2.2E-35 T 31-10-2018 IPR000160 GGDEF domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Gene3D G3DSA:3.30.70.270 470 641 3.0E-51 T 31-10-2018 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Pfam PF00990 Diguanylate cyclase, GGDEF domain 471 624 1.6E-39 T 31-10-2018 IPR000160 GGDEF domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00086 418 460 8.1E-7 T 31-10-2018 IPR001610 PAC motif Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SUPERFAMILY SSF55073 476 630 1.1E-43 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00267 460 629 1.7E-56 T 31-10-2018 IPR000160 GGDEF domain Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SMART SM00065 192 343 8.6E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Pfam PF01590 GAF domain 193 332 5.0E-13 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 Gene3D G3DSA:3.20.20.450 642 891 5.5E-105 T 31-10-2018 IPR035919 EAL domain superfamily Y89_5689 3dcc8e4356cf1a7688df151b3a9a3f88 899 SUPERFAMILY SSF141868 644 892 8.11E-92 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3631 e9eb9eceae99b993e4ae984d276be535 109 SUPERFAMILY SSF48452 2 109 2.37E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3631 e9eb9eceae99b993e4ae984d276be535 109 Gene3D G3DSA:1.25.40.10 1 109 4.3E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3631 e9eb9eceae99b993e4ae984d276be535 109 PIRSF PIRSF017117 1 109 8.4E-42 T 31-10-2018 IPR016684 Type III secretion system chaperone, YscY Y89_3036 5e42298b8b709640916980a95e15e41f 800 Gene3D G3DSA:1.20.1640.10 605 791 1.1E-13 T 31-10-2018 Y89_3036 5e42298b8b709640916980a95e15e41f 800 Gene3D G3DSA:1.20.1640.10 219 406 1.6E-9 T 31-10-2018 Y89_3036 5e42298b8b709640916980a95e15e41f 800 SUPERFAMILY SSF82866 203 392 3.27E-28 T 31-10-2018 Y89_3036 5e42298b8b709640916980a95e15e41f 800 SUPERFAMILY SSF82866 584 787 1.96E-33 T 31-10-2018 Y89_3036 5e42298b8b709640916980a95e15e41f 800 PRINTS PR00702 Acriflavin resistance protein family signature 629 652 1.8E-5 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3036 5e42298b8b709640916980a95e15e41f 800 PRINTS PR00702 Acriflavin resistance protein family signature 336 360 1.8E-5 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3036 5e42298b8b709640916980a95e15e41f 800 PRINTS PR00702 Acriflavin resistance protein family signature 756 779 1.8E-5 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3036 5e42298b8b709640916980a95e15e41f 800 PRINTS PR00702 Acriflavin resistance protein family signature 681 705 1.8E-5 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3036 5e42298b8b709640916980a95e15e41f 800 Pfam PF03176 MMPL family 584 790 4.1E-16 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y89_3036 5e42298b8b709640916980a95e15e41f 800 Pfam PF03176 MMPL family 171 422 3.5E-8 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 SUPERFAMILY SSF46689 225 275 1.21E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 322 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 Pfam PF12833 Helix-turn-helix domain 249 328 3.4E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 Gene3D G3DSA:1.10.10.60 225 330 6.1E-30 T 31-10-2018 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 SMART SM00342 241 326 5.0E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2681 f119c71039456c99d34839a1bb9d0324 333 Pfam PF14525 AraC-binding-like domain 23 204 2.8E-36 T 31-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 SMART SM00471 67 271 8.8E-10 T 31-10-2018 IPR003607 HD/PDEase domain Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 Gene3D G3DSA:1.10.3210.10 3 246 4.5E-54 T 31-10-2018 Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 SUPERFAMILY SSF109604 36 493 1.88E-58 T 31-10-2018 Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 Gene3D G3DSA:1.10.3410.10 249 387 1.7E-17 T 31-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 2 498 45.199 T 31-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 Pfam PF01966 HD domain 71 136 9.1E-8 T 31-10-2018 IPR006674 HD domain Y89_4228 bc80a23135f25fddb48b63c002a58a79 498 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 36 496 3.1E-108 T 31-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 Y89_4577 50e1621b926d793c13547326842176f8 687 Pfam PF00593 TonB dependent receptor 208 685 5.4E-43 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_4577 50e1621b926d793c13547326842176f8 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 156 4.4E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4577 50e1621b926d793c13547326842176f8 687 SUPERFAMILY SSF56935 55 687 9.16E-95 T 31-10-2018 Y89_4577 50e1621b926d793c13547326842176f8 687 Gene3D G3DSA:2.170.130.10 50 166 8.1E-27 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4577 50e1621b926d793c13547326842176f8 687 Gene3D G3DSA:2.40.170.20 168 687 8.8E-70 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Pfam PF00403 Heavy-metal-associated domain 11 69 4.3E-16 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Pfam PF00403 Heavy-metal-associated domain 77 136 2.2E-15 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 SUPERFAMILY SSF55008 6 71 4.71E-18 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 469 484 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 276 294 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 409 423 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 206 225 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 662 679 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 89 103 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00943 Copper-transporting ATPase signature 256 275 4.8E-13 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 486 500 6.9E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 708 720 6.9E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 685 704 6.9E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 336 350 6.9E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 632 642 6.9E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Gene3D G3DSA:2.70.150.20 280 391 5.0E-38 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 SUPERFAMILY SSF56784 485 785 1.39E-59 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 ProSitePatterns PS01047 Heavy-metal-associated domain. 79 108 - T 31-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Gene3D G3DSA:3.40.1110.10 497 617 6.3E-86 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 SUPERFAMILY SSF81653 289 386 3.27E-26 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Gene3D G3DSA:3.30.70.100 75 140 6.1E-23 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Gene3D G3DSA:3.30.70.100 9 72 3.1E-20 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Pfam PF00122 E1-E2 ATPase 287 466 5.0E-56 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 ProSitePatterns PS01047 Heavy-metal-associated domain. 13 42 - T 31-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 488 494 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 SUPERFAMILY SSF55008 75 145 2.09E-20 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 202 788 6.9E-179 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 221 787 1.8E-191 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 ProSitePatterns PS01229 Hypothetical cof family signature 2. 685 707 - T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 76 137 5.8E-11 T 31-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 10 70 6.3E-9 T 31-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Pfam PF00702 haloacid dehalogenase-like hydrolase 484 699 5.7E-42 T 31-10-2018 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 259 765 1.4E-86 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 SUPERFAMILY SSF81665 257 762 1.05E-15 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_1103 2452e4b86b6a214b5b42b8e3851b73eb 792 Gene3D G3DSA:3.40.50.1000 467 737 6.3E-86 T 31-10-2018 IPR023214 HAD superfamily Y89_4829 b312c96d30fea15509ee9a681590ac03 406 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 19 374 8.7E-108 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 Y89_4829 b312c96d30fea15509ee9a681590ac03 406 PIRSF PIRSF005962 4 391 8.1E-121 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 Y89_4829 b312c96d30fea15509ee9a681590ac03 406 SUPERFAMILY SSF55031 188 300 1.57E-30 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_4829 b312c96d30fea15509ee9a681590ac03 406 Gene3D G3DSA:3.30.70.360 185 299 4.3E-132 T 31-10-2018 Y89_4829 b312c96d30fea15509ee9a681590ac03 406 Pfam PF07687 Peptidase dimerisation domain 192 286 3.9E-11 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_4829 b312c96d30fea15509ee9a681590ac03 406 Pfam PF01546 Peptidase family M20/M25/M40 77 385 4.4E-34 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_4829 b312c96d30fea15509ee9a681590ac03 406 SUPERFAMILY SSF53187 6 389 1.08E-87 T 31-10-2018 Y89_4829 b312c96d30fea15509ee9a681590ac03 406 Gene3D G3DSA:3.40.630.10 20 373 4.3E-132 T 31-10-2018 Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 Gene3D G3DSA:3.40.50.300 419 660 5.0E-27 T 31-10-2018 Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 Gene3D G3DSA:3.40.50.300 157 331 6.2E-8 T 31-10-2018 Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 657 9.4E-265 T 31-10-2018 IPR022458 Conjugative coupling factor TraG/TraD Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 Pfam PF12696 TraM recognition site of TraD and TraG 509 636 8.8E-11 T 31-10-2018 IPR032689 TraD/TraG, TraM recognition site Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 SUPERFAMILY SSF52540 146 659 1.81E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4662 6981cbec7775c8c634352e2869cf5ca2 728 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 657 0.0 T 31-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 SUPERFAMILY SSF75516 27 190 2.75E-16 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 SMART SM00421 197 254 3.7E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 Gene3D G3DSA:3.30.450.80 24 188 1.1E-14 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 Pfam PF00196 Bacterial regulatory proteins, luxR family 199 253 1.4E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 TIGRFAM TIGR03541 reg_near_HchA: LuxR family transcriptional regulatory, chaperone HchA-associated 24 260 1.3E-110 T 31-10-2018 IPR019941 Transcription regulator LuxR, chaperone HchA-associated Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 Pfam PF03472 Autoinducer binding domain 39 180 1.8E-24 T 31-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 Gene3D G3DSA:1.10.10.10 194 260 2.7E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 230 242 2.5E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 214 2.5E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 214 230 2.5E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4216 d9e28d8f6087645d6eae8dd79d7d76e4 262 SUPERFAMILY SSF46894 193 260 5.1E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:1.20.5.480 244 289 2.1E-16 T 31-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 PIRSF PIRSF036298 1 304 2.2E-160 T 31-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF13247 4Fe-4S dicluster domain 88 184 1.5E-24 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF12800 4Fe-4S binding domain 33 45 0.069 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 23 223 3.9E-96 T 31-10-2018 Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Gene3D G3DSA:3.30.70.20 15 158 3.9E-96 T 31-10-2018 Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 SUPERFAMILY SSF54862 24 265 2.62E-70 T 31-10-2018 Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 Pfam PF09163 Formate dehydrogenase N, transmembrane 242 284 3.1E-23 T 31-10-2018 IPR015246 Formate dehydrogenase, transmembrane Y89_5423 66a3929bc35c474baff9112bb9cb5239 309 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 5 286 1.7E-143 T 31-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 Y89_4222 13833744b596469b4ab2f564de5b3cb0 325 TIGRFAM TIGR01556 rhamnosyltran: rhamnosyltransferase 11 291 1.6E-118 T 31-10-2018 IPR006446 Rhamnosyltransferase Y89_4222 13833744b596469b4ab2f564de5b3cb0 325 SUPERFAMILY SSF53448 22 280 7.31E-23 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4222 13833744b596469b4ab2f564de5b3cb0 325 Pfam PF00535 Glycosyl transferase family 2 33 173 8.6E-7 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_4222 13833744b596469b4ab2f564de5b3cb0 325 Gene3D G3DSA:3.90.550.10 21 219 1.4E-14 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_6231 4a1b744abf8d94a3c517682460a10160 97 Gene3D G3DSA:1.10.760.10 18 97 4.8E-29 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 94 1.4E-13 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 84 95 1.5E-8 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 41 51 1.5E-8 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 30 41 1.5E-8 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 PRINTS PR00607 Class IE cytochrome C signature 69 81 1.5E-8 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6231 4a1b744abf8d94a3c517682460a10160 97 SUPERFAMILY SSF46626 20 95 1.0E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5775 a023d40041c11f655aac3a31b4b475b6 196 SUPERFAMILY SSF51182 4 190 1.07E-56 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5775 a023d40041c11f655aac3a31b4b475b6 196 Gene3D G3DSA:2.60.120.10 22 115 3.0E-80 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5775 a023d40041c11f655aac3a31b4b475b6 196 Gene3D G3DSA:2.60.120.10 116 193 3.0E-80 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5775 a023d40041c11f655aac3a31b4b475b6 196 Pfam PF05962 HutD 11 181 1.1E-54 T 31-10-2018 IPR010282 Uncharacterised protein family HutD/Ves Y89_1658 65702ca0236538cbcd8e504e8d1e2da9 107 SUPERFAMILY SSF101498 5 104 1.02E-19 T 31-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily Y89_1658 65702ca0236538cbcd8e504e8d1e2da9 107 Pfam PF04316 Anti-sigma-28 factor, FlgM 49 102 1.4E-20 T 31-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Y89_1658 65702ca0236538cbcd8e504e8d1e2da9 107 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 5 104 1.4E-26 T 31-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 3.2E-4 T 31-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.4E-20 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Gene3D G3DSA:1.10.1670.10 11 203 4.2E-78 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SUPERFAMILY SSF48150 3 208 1.88E-73 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Gene3D G3DSA:1.10.340.30 21 132 4.2E-78 T 31-10-2018 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 PIRSF PIRSF001435 1 212 1.3E-52 T 31-10-2018 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SMART SM00478 38 185 1.8E-59 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.768 T 31-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 Pfam PF00633 Helix-hairpin-helix motif 100 127 7.1E-10 T 31-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 SMART SM00525 186 206 5.2E-5 T 31-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Y89_1514 e86adf6dd629f3aabff5ed9cbb0e7a6b 212 TIGRFAM TIGR01083 nth: endonuclease III 5 194 2.6E-86 T 31-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Y89_1135 731f7da9d6f2d198390777a4e7d8418f 308 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 25 296 3.8E-69 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_1135 731f7da9d6f2d198390777a4e7d8418f 308 Gene3D G3DSA:3.40.190.10 28 299 1.9E-91 T 31-10-2018 Y89_1135 731f7da9d6f2d198390777a4e7d8418f 308 SUPERFAMILY SSF53850 25 299 8.45E-70 T 31-10-2018 Y89_1135 731f7da9d6f2d198390777a4e7d8418f 308 Gene3D G3DSA:3.40.190.120 124 238 1.9E-91 T 31-10-2018 Y89_3957 146ccd57ae4afe5f8171b3edcf613e7d 407 PIRSF PIRSF029407 1 404 9.4E-189 T 31-10-2018 IPR014556 Uncharacterised conserved protein UCP029407 Y89_3957 146ccd57ae4afe5f8171b3edcf613e7d 407 Gene3D G3DSA:3.40.50.300 1 253 2.0E-7 T 31-10-2018 Y89_3957 146ccd57ae4afe5f8171b3edcf613e7d 407 SUPERFAMILY SSF52540 2 209 1.59E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6156 5ea01e7ab2c08389735d43e755ccbd32 106 Gene3D G3DSA:3.30.2270.10 1 99 5.6E-37 T 31-10-2018 IPR038561 Sarcosine oxidase subunit delta superfamily KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6156 5ea01e7ab2c08389735d43e755ccbd32 106 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 87 2.1E-40 T 31-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6156 5ea01e7ab2c08389735d43e755ccbd32 106 Pfam PF04267 Sarcosine oxidase, delta subunit family 4 84 6.6E-37 T 31-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SUPERFAMILY SSF52540 173 427 9.68E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 658 739 2.9E-25 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Gene3D G3DSA:1.10.8.60 658 757 4.6E-31 T 31-10-2018 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 538 556 1.1E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 614 1.1E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 496 514 1.1E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 567 585 1.1E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 7.4E-16 T 31-10-2018 IPR004176 Clp, N-terminal Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Gene3D G3DSA:3.40.50.300 444 656 1.1E-81 T 31-10-2018 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SUPERFAMILY SSF81923 1 142 5.1E-61 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SUPERFAMILY SSF52540 442 744 1.52E-80 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 523 541 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Gene3D G3DSA:3.40.50.300 172 360 1.1E-64 T 31-10-2018 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 740 0.0 T 31-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 491 652 3.1E-49 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 307 319 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SMART SM00382 211 356 5.4E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SMART SM00382 492 659 1.6E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 216 328 5.8E-12 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 SMART SM01086 658 748 3.0E-33 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Gene3D G3DSA:1.10.1780.10 1 143 6.6E-44 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_2468 db90a073db61aceed4e27ae105a0e97b 758 Gene3D G3DSA:1.10.8.60 361 443 2.6E-32 T 31-10-2018 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 Gene3D G3DSA:3.30.470.20 85 220 5.8E-93 T 31-10-2018 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 233 1.8E-79 T 31-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 Gene3D G3DSA:3.30.200.20 7 231 5.8E-93 T 31-10-2018 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.413 T 31-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 SUPERFAMILY SSF56104 3 232 6.21E-80 T 31-10-2018 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 31-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 Pfam PF01259 SAICAR synthetase 7 231 2.5E-63 T 31-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_4344 6c6dd0696f9a52b393a737e9a0265892 236 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 31-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_0997 c95669093205606346b027755afda3a3 297 Gene3D G3DSA:3.40.190.10 108 206 3.9E-20 T 31-10-2018 Y89_0997 c95669093205606346b027755afda3a3 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 245 5.4E-17 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0997 c95669093205606346b027755afda3a3 297 Gene3D G3DSA:3.40.190.10 34 244 3.9E-20 T 31-10-2018 Y89_0997 c95669093205606346b027755afda3a3 297 SUPERFAMILY SSF53850 27 245 6.42E-35 T 31-10-2018 Y89_4823 9d74211b1aa4e2eaa5e99c99259fbce8 426 Pfam PF01757 Acyltransferase family 12 397 2.6E-30 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 Gene3D G3DSA:1.10.1040.10 174 294 1.2E-36 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 296 4.4E-86 T 31-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 174 292 1.0E-31 T 31-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 SUPERFAMILY SSF51735 1 169 3.57E-30 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 SUPERFAMILY SSF48179 174 293 4.42E-32 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 Gene3D G3DSA:3.40.50.720 1 173 2.8E-35 T 31-10-2018 Y89_4886 efe3a0005cef433b72fafa9f31c9c652 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 149 1.5E-34 T 31-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Y89_2935 44128bc565504ce2d9e47edbf6104302 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 18 36 - T 31-10-2018 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 SUPERFAMILY SSF47413 15 73 5.06E-15 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 SUPERFAMILY SSF53822 72 327 1.16E-52 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_2935 44128bc565504ce2d9e47edbf6104302 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 17 62 2.3E-13 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 SMART SM00354 15 85 2.1E-21 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:1.10.260.40 7 72 1.7E-19 T 31-10-2018 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:3.40.50.2300 172 304 6.8E-66 T 31-10-2018 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 Pfam PF13377 Periplasmic binding protein-like domain 182 343 1.3E-29 T 31-10-2018 Y89_2935 44128bc565504ce2d9e47edbf6104302 343 Gene3D G3DSA:3.40.50.2300 78 324 6.8E-66 T 31-10-2018 Y89_3034 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 Gene3D G3DSA:2.60.120.620 12 288 6.3E-102 T 31-10-2018 Y89_3034 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 27 224 7.0E-40 T 31-10-2018 IPR008775 Phytanoyl-CoA dioxygenase Y89_3034 5bc5a9cc290bf27c4f8c590fdaf3ead4 288 SUPERFAMILY SSF51197 28 268 6.13E-43 T 31-10-2018 Y89_6059 75e3538f3cb74b472ef9a4728f71a47a 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 1.7E-47 T 31-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Y89_6059 75e3538f3cb74b472ef9a4728f71a47a 151 Pfam PF00692 dUTPase 17 149 5.2E-40 T 31-10-2018 IPR029054 dUTPase-like Y89_6059 75e3538f3cb74b472ef9a4728f71a47a 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 33.215 T 31-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Y89_6059 75e3538f3cb74b472ef9a4728f71a47a 151 Gene3D G3DSA:2.70.40.10 1 150 3.3E-52 T 31-10-2018 IPR036157 dUTPase-like superfamily Y89_6059 75e3538f3cb74b472ef9a4728f71a47a 151 SUPERFAMILY SSF51283 2 149 1.57E-52 T 31-10-2018 IPR036157 dUTPase-like superfamily Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 SMART SM00382 375 520 3.1E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Gene3D G3DSA:3.30.230.10 614 799 2.6E-71 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Hamap MF_01973 Lon protease [lon]. 32 798 59.927 T 31-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 SUPERFAMILY SSF52540 337 614 1.01E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 702 710 - T 31-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Gene3D G3DSA:1.10.8.60 519 611 3.5E-27 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 729 748 1.6E-47 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 620 636 1.6E-47 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 383 402 1.6E-47 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 752 770 1.6E-47 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 699 718 1.6E-47 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 597 797 4.1E-79 T 31-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Gene3D G3DSA:1.20.58.1480 145 270 2.0E-29 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Gene3D G3DSA:2.30.130.40 23 140 2.5E-13 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Gene3D G3DSA:3.40.50.300 340 518 3.9E-63 T 31-10-2018 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 SUPERFAMILY SSF54211 620 797 5.31E-47 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 32 227 3.6E-25 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 SMART SM00464 31 228 8.5E-23 T 31-10-2018 IPR003111 Lon, substrate-binding domain Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 SUPERFAMILY SSF88697 32 227 6.46E-19 T 31-10-2018 IPR015947 PUA-like superfamily Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 TIGRFAM TIGR00763 lon: endopeptidase La 34 797 1.4E-277 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 PIRSF PIRSF001174 21 799 2.3E-273 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Y89_4579 d997468f8d08fb351e59ed9f2edc8f71 799 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 379 517 1.6E-22 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 Gene3D G3DSA:1.10.540.10 10 108 3.5E-14 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 SUPERFAMILY SSF56645 13 197 5.01E-14 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 Gene3D G3DSA:1.20.140.10 206 352 4.7E-35 T 31-10-2018 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 203 341 6.4E-28 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 Gene3D G3DSA:2.40.110.10 129 205 1.1E-5 T 31-10-2018 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 SUPERFAMILY SSF47203 205 349 2.9E-35 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4335 70b7aab6336bf920c84dc40ac2d3a4b5 354 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 90 2.4E-7 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5829 8ad7c39917fa7681aa9d312d462dfcf3 230 SUPERFAMILY SSF161098 13 208 1.96E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5829 8ad7c39917fa7681aa9d312d462dfcf3 230 Gene3D G3DSA:1.10.3720.10 2 225 4.3E-51 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5829 8ad7c39917fa7681aa9d312d462dfcf3 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 223 3.6E-21 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5829 8ad7c39917fa7681aa9d312d462dfcf3 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 117 3.0E-22 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_3063 6c2dc243e0dfb6515a0395da3881dda3 331 PIRSF PIRSF033905 1 331 1.9E-171 T 31-10-2018 IPR009645 Uncharacterised conserved protein GguC Y89_3063 6c2dc243e0dfb6515a0395da3881dda3 331 SUPERFAMILY SSF56529 112 316 9.01E-25 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_3063 6c2dc243e0dfb6515a0395da3881dda3 331 Gene3D G3DSA:3.90.850.10 128 320 1.4E-13 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_5532 25df372e99e51deebe216f7cd35274dc 150 Pfam PF00583 Acetyltransferase (GNAT) family 39 129 1.1E-13 T 31-10-2018 IPR000182 GNAT domain Y89_5532 25df372e99e51deebe216f7cd35274dc 150 SUPERFAMILY SSF55729 1 149 1.4E-26 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5532 25df372e99e51deebe216f7cd35274dc 150 Gene3D G3DSA:3.40.630.30 1 150 2.8E-26 T 31-10-2018 Y89_3697 18bd32c94b7832943fa7cede502cb9bc 302 Hamap MF_00313 Glutaminase [glsA]. 1 302 47.144 T 31-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y89_3697 18bd32c94b7832943fa7cede502cb9bc 302 Pfam PF04960 Glutaminase 19 302 4.3E-111 T 31-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y89_3697 18bd32c94b7832943fa7cede502cb9bc 302 Gene3D G3DSA:3.40.710.10 1 302 1.5E-108 T 31-10-2018 Y89_3697 18bd32c94b7832943fa7cede502cb9bc 302 TIGRFAM TIGR03814 Gln_ase: glutaminase A 5 302 9.7E-129 T 31-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Y89_3697 18bd32c94b7832943fa7cede502cb9bc 302 SUPERFAMILY SSF56601 1 302 4.38E-109 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_2957 ff862c18051adda60fa3be6b22538987 81 Pfam PF13187 4Fe-4S dicluster domain 28 71 1.9E-8 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_2957 ff862c18051adda60fa3be6b22538987 81 SUPERFAMILY SSF54862 9 74 1.47E-14 T 31-10-2018 Y89_2957 ff862c18051adda60fa3be6b22538987 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_2957 ff862c18051adda60fa3be6b22538987 81 Gene3D G3DSA:3.30.70.20 15 76 5.1E-17 T 31-10-2018 Y89_5605 aad12833c84219f04c4381299e84a50b 139 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.601 T 31-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_5605 aad12833c84219f04c4381299e84a50b 139 SUPERFAMILY SSF54995 1 102 9.55E-37 T 31-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5605 aad12833c84219f04c4381299e84a50b 139 Pfam PF01250 Ribosomal protein S6 3 91 5.9E-27 T 31-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5605 aad12833c84219f04c4381299e84a50b 139 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 31-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_5605 aad12833c84219f04c4381299e84a50b 139 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 8.0E-34 T 31-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5605 aad12833c84219f04c4381299e84a50b 139 Gene3D G3DSA:3.30.70.60 1 92 3.0E-31 T 31-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 TIGRFAM TIGR03073 release_rtcB: release factor H-coupled RctB family protein 12 367 8.5E-189 T 31-10-2018 IPR017510 Release factor H-coupled RctB family protein Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 SUPERFAMILY SSF103365 8 372 6.8E-103 T 31-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 Pfam PF01139 tRNA-splicing ligase RtcB 125 372 2.3E-55 T 31-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 Pfam PF01139 tRNA-splicing ligase RtcB 29 98 1.1E-8 T 31-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 Gene3D G3DSA:3.90.1860.10 9 104 3.2E-15 T 31-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_6212 135cf11bfd2e8d209901c41d2733acab 379 Gene3D G3DSA:3.90.1860.10 105 373 9.1E-69 T 31-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_1087 20937510944275851098ed62954bd555 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 1.3E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1087 20937510944275851098ed62954bd555 272 Gene3D G3DSA:1.10.3720.10 73 269 3.0E-28 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1087 20937510944275851098ed62954bd555 272 SUPERFAMILY SSF161098 76 261 6.8E-36 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1512 619bb603c8d275e187d32b7d42d3e8ab 357 Pfam PF13847 Methyltransferase domain 176 334 1.4E-21 T 31-10-2018 IPR025714 Methyltransferase domain Y89_1512 619bb603c8d275e187d32b7d42d3e8ab 357 Gene3D G3DSA:1.10.10.10 14 93 5.0E-5 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1512 619bb603c8d275e187d32b7d42d3e8ab 357 Gene3D G3DSA:3.40.50.150 142 345 4.5E-32 T 31-10-2018 Y89_1512 619bb603c8d275e187d32b7d42d3e8ab 357 SUPERFAMILY SSF53335 151 348 2.28E-35 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1512 619bb603c8d275e187d32b7d42d3e8ab 357 SUPERFAMILY SSF46785 27 91 9.42E-7 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2849 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 SUPERFAMILY SSF161098 7 200 5.23E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2849 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 217 1.1E-24 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2849 ba52fb1dbbe7c2b3c25451193e9bfaf6 217 Gene3D G3DSA:1.10.3720.10 2 216 1.1E-52 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 SUPERFAMILY SSF54611 8 148 7.19E-53 T 31-10-2018 IPR035958 SecB-like superfamily Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 11 147 1.6E-54 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 Gene3D G3DSA:3.10.420.10 1 159 4.8E-58 T 31-10-2018 IPR035958 SecB-like superfamily Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 80 100 5.6E-37 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 19 36 5.6E-37 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 130 148 5.6E-37 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 104 126 5.6E-37 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 Pfam PF02556 Preprotein translocase subunit SecB 11 150 2.7E-54 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_5800 3267b9739b18c5a9b84a12c3c68e887c 163 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 33.454 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Y89_3876 4c3cf4b232d4f35bbe71f9edf81954a5 296 SMART SM00260 146 281 6.1E-22 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_3876 4c3cf4b232d4f35bbe71f9edf81954a5 296 SUPERFAMILY SSF50341 148 282 2.75E-15 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_3876 4c3cf4b232d4f35bbe71f9edf81954a5 296 PIRSF PIRSF020479 1 296 4.4E-114 T 31-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like Y89_3876 4c3cf4b232d4f35bbe71f9edf81954a5 296 Pfam PF01584 CheW-like domain 150 281 1.8E-13 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0212 1d421c59d603fcdc1e0732c4d4458a91 133 Gene3D G3DSA:3.30.420.270 60 129 2.5E-16 T 31-10-2018 Y89_0212 1d421c59d603fcdc1e0732c4d4458a91 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 132 4.0E-28 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 89 114 6.6E-41 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 35 64 6.6E-41 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 PRINTS PR00061 Ribosomal protein L19 signature 5 34 6.6E-41 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 Pfam PF01245 Ribosomal protein L19 5 114 2.3E-49 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 Gene3D G3DSA:2.30.30.790 3 115 3.9E-15 T 31-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 115 29.92 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 4 114 3.7E-50 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 31-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 SUPERFAMILY SSF50104 2 114 2.61E-45 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily Y89_1285 f4d4becb78b8492e132fdd007a6696e9 116 PIRSF PIRSF002191 1 116 5.6E-49 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4412 af51d77bcea63644a2cf41d388c39dc6 345 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 20 247 3.9E-68 T 31-10-2018 IPR018642 Protein of unknown function DUF2066 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 Gene3D G3DSA:3.40.190.290 93 302 1.1E-33 T 31-10-2018 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 SUPERFAMILY SSF46785 4 109 7.57E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 SUPERFAMILY SSF53850 93 299 3.74E-33 T 31-10-2018 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.2E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.2E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.2E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 Gene3D G3DSA:1.10.10.10 1 86 1.7E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1249 fdbf1628a0c2432a839b7a181f7baed6 311 Pfam PF03466 LysR substrate binding domain 91 298 4.5E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4923 7b55eda7e09c4777ca651cba87c6289d 345 Pfam PF00248 Aldo/keto reductase family 16 336 1.1E-66 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_4923 7b55eda7e09c4777ca651cba87c6289d 345 Gene3D G3DSA:3.20.20.100 1 345 2.4E-126 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_4923 7b55eda7e09c4777ca651cba87c6289d 345 PRINTS PR00069 Aldo-keto reductase signature 163 180 2.2E-7 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4923 7b55eda7e09c4777ca651cba87c6289d 345 PRINTS PR00069 Aldo-keto reductase signature 116 134 2.2E-7 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4923 7b55eda7e09c4777ca651cba87c6289d 345 SUPERFAMILY SSF51430 1 343 2.62E-105 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_4396 ec24398801fad68bade41b6d99db4658 142 PIRSF PIRSF000714 1 137 3.0E-49 T 31-10-2018 IPR026026 Histidine triad hydrolase, Hint-type Y89_4396 ec24398801fad68bade41b6d99db4658 142 Gene3D G3DSA:3.30.428.10 1 138 3.6E-43 T 31-10-2018 IPR036265 HIT-like superfamily Y89_4396 ec24398801fad68bade41b6d99db4658 142 SUPERFAMILY SSF54197 2 132 1.87E-35 T 31-10-2018 IPR036265 HIT-like superfamily Y89_4396 ec24398801fad68bade41b6d99db4658 142 Pfam PF01230 HIT domain 8 98 2.6E-18 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.964 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 SUPERFAMILY SSF50193 1 122 3.92E-52 T 31-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 Gene3D G3DSA:2.40.150.20 1 122 9.6E-55 T 31-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 2.6E-58 T 31-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 4.6E-55 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 SMART SM01374 1 122 4.5E-86 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Y89_0769 0f172d6b2e1dfd324cd372b9538696e4 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 31-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 Gene3D G3DSA:3.40.50.300 2 254 1.7E-76 T 31-10-2018 Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 SMART SM00382 28 227 1.9E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 SUPERFAMILY SSF52540 4 249 5.1E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 Pfam PF00005 ABC transporter 19 179 2.0E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2096 b161a47bb32b51e83a9da04d693a6746 255 PIRSF PIRSF039085 1 255 1.6E-114 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_5269 b877a8c0aa1c4b33389e0493f4faaf70 318 Pfam PF04463 Protein of unknown function (DUF523) 13 150 1.1E-33 T 31-10-2018 IPR007553 Domain of unknown function DUF523 Y89_5269 b877a8c0aa1c4b33389e0493f4faaf70 318 PIRSF PIRSF037004 3 318 1.1E-124 T 31-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 Y89_5269 b877a8c0aa1c4b33389e0493f4faaf70 318 Pfam PF08349 Protein of unknown function (DUF1722) 193 309 3.7E-41 T 31-10-2018 IPR013560 Domain of unknown function DUF1722 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 14 233 1.3E-82 T 31-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Gene3D G3DSA:1.20.140.160 85 235 2.5E-43 T 31-10-2018 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 233 3.2E-34 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Pfam PF04542 Sigma-70 region 2 14 86 7.6E-20 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 1 236 67.681 T 31-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 PRINTS PR00046 Major sigma-70 factor signature 41 54 2.1E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 PRINTS PR00046 Major sigma-70 factor signature 218 229 2.1E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 PRINTS PR00046 Major sigma-70 factor signature 186 198 2.1E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 PRINTS PR00046 Major sigma-70 factor signature 203 218 2.1E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 41 54 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Gene3D G3DSA:1.10.1740.10 1 83 1.1E-31 T 31-10-2018 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 SUPERFAMILY SSF88659 155 236 1.35E-20 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Pfam PF04545 Sigma-70, region 4 182 231 5.8E-19 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 Pfam PF04539 Sigma-70 region 3 95 155 9.6E-10 T 31-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 PIRSF PIRSF000770 1 238 2.0E-35 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 SUPERFAMILY SSF88659 88 155 9.16E-13 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3884 2f04aea07767327a6b80d07e2de52e32 239 SUPERFAMILY SSF88946 3 86 5.1E-26 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2537 255059fc1e19c155866accfa5c9720b2 496 SUPERFAMILY SSF53720 4 493 6.15E-142 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_2537 255059fc1e19c155866accfa5c9720b2 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_2537 255059fc1e19c155866accfa5c9720b2 496 Pfam PF00171 Aldehyde dehydrogenase family 22 490 1.1E-138 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_2537 255059fc1e19c155866accfa5c9720b2 496 Gene3D G3DSA:3.40.309.10 268 459 4.6E-153 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_2537 255059fc1e19c155866accfa5c9720b2 496 Gene3D G3DSA:3.40.605.10 26 488 4.6E-153 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_2832 a6203b7de5240f3bf86ef3f590362277 141 SUPERFAMILY SSF160719 27 126 1.44E-13 T 31-10-2018 Y89_2832 a6203b7de5240f3bf86ef3f590362277 141 Pfam PF04965 Gene 25-like lysozyme 26 115 3.1E-17 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y89_2832 a6203b7de5240f3bf86ef3f590362277 141 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 6 125 8.4E-26 T 31-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y89_2832 a6203b7de5240f3bf86ef3f590362277 141 Gene3D G3DSA:3.10.450.40 6 125 7.5E-7 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF14559 Tetratricopeptide repeat 129 195 5.5E-11 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:1.25.40.10 202 289 3.1E-25 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 SUPERFAMILY SSF52833 5 113 7.72E-37 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:3.40.30.10 3 112 1.1E-32 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 SUPERFAMILY SSF48452 125 247 6.64E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Gene3D G3DSA:1.25.40.10 116 201 3.9E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 TIGRFAM TIGR01068 thioredoxin: thioredoxin 13 110 1.7E-30 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF14561 Tetratricopeptide repeat 200 289 4.4E-27 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 Pfam PF00085 Thioredoxin 9 109 1.8E-27 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 36 45 1.5E-7 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 28 36 1.5E-7 T 31-10-2018 Y89_0964 137ef78d654d7e8d2dbc0701bf04a352 289 PRINTS PR00421 Thioredoxin family signature 76 87 1.5E-7 T 31-10-2018 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF03600 Citrate transporter 17 555 7.9E-58 T 31-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF02080 TrkA-C domain 232 300 2.3E-11 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 Pfam PF02080 TrkA-C domain 326 392 4.0E-12 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 31-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 SUPERFAMILY SSF116726 317 393 2.75E-17 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 Gene3D G3DSA:3.30.70.1450 323 398 4.8E-15 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 SUPERFAMILY SSF116726 232 307 8.89E-10 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_1185 2499f8790541d26b4b2aae9b1fac1d55 610 Gene3D G3DSA:3.30.70.1450 231 302 3.5E-12 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Y89_5546 5401c63ffa02ff3b0058ade8276d89e4 135 SUPERFAMILY SSF68912 100 133 5.89E-5 T 31-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Y89_5546 5401c63ffa02ff3b0058ade8276d89e4 135 Pfam PF07498 Rho termination factor, N-terminal domain 102 133 1.1E-7 T 31-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Y89_0248 3fdab70bca83def16b2d76642920732d 441 SUPERFAMILY SSF103473 25 438 5.36E-74 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0248 3fdab70bca83def16b2d76642920732d 441 Gene3D G3DSA:1.20.1250.20 26 438 4.2E-68 T 31-10-2018 Y89_0248 3fdab70bca83def16b2d76642920732d 441 Pfam PF07690 Major Facilitator Superfamily 40 397 1.2E-51 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5895 d56fa5e0130230b74959dc880f5de15b 225 SUPERFAMILY SSF109755 37 209 1.1E-9 T 31-10-2018 Y89_5895 d56fa5e0130230b74959dc880f5de15b 225 Pfam PF01865 Protein of unknown function DUF47 7 224 1.2E-59 T 31-10-2018 IPR018445 Putative phosphate transport regulator Y89_5895 d56fa5e0130230b74959dc880f5de15b 225 Gene3D G3DSA:1.20.58.220 1 225 1.9E-61 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_5895 d56fa5e0130230b74959dc880f5de15b 225 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 8 224 4.3E-54 T 31-10-2018 IPR002727 Protein of unknown function DUF47 Y89_6310 c555a9deef9cb89758ebe9dc5b299734 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 40 4.0E-15 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6310 c555a9deef9cb89758ebe9dc5b299734 44 Pfam PF00468 Ribosomal protein L34 1 44 2.1E-25 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6310 c555a9deef9cb89758ebe9dc5b299734 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 31-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_6310 c555a9deef9cb89758ebe9dc5b299734 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.452 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6310 c555a9deef9cb89758ebe9dc5b299734 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 4.7E-26 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 Pfam PF00067 Cytochrome P450 59 396 3.2E-28 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 Gene3D G3DSA:1.10.630.10 47 426 7.0E-89 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 317 344 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 366 375 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 169 184 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 300 311 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 375 386 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 106 117 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 PRINTS PR00359 B-class P450 signature 345 360 5.7E-27 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 SUPERFAMILY SSF48264 59 425 9.56E-77 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2555 08d3c1654a7dc35997f7900c6ffae89f 426 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 368 377 - T 31-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 311 3.9E-126 T 31-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 SUPERFAMILY SSF52374 342 474 4.74E-25 T 31-10-2018 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 Gene3D G3DSA:3.40.50.620 325 474 4.6E-39 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 Pfam PF00294 pfkB family carbohydrate kinase 13 304 1.0E-48 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 473 43.403 T 31-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 SUPERFAMILY SSF53613 12 309 1.56E-58 T 31-10-2018 IPR029056 Ribokinase-like Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 Gene3D G3DSA:3.40.1190.20 2 308 1.6E-110 T 31-10-2018 IPR029056 Ribokinase-like Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 341 407 2.2E-16 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 Pfam PF01467 Cytidylyltransferase-like 344 434 3.1E-16 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_5667 78a2e7f05c42702847849a65ec62df6c 474 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 472 1.3E-65 T 31-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Y89_3552 c77d31df05a86199efbe60637790bb2a 108 SUPERFAMILY SSF50022 1 103 1.96E-34 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3552 c77d31df05a86199efbe60637790bb2a 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 2 99 1.3E-32 T 31-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 Y89_3552 c77d31df05a86199efbe60637790bb2a 108 Gene3D G3DSA:2.102.10.10 1 105 1.6E-27 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3552 c77d31df05a86199efbe60637790bb2a 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 2 98 2.4E-15 T 31-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 232 3.6E-26 T 31-10-2018 Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.0E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.0E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.0E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 SUPERFAMILY SSF51735 6 232 1.84E-40 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 Gene3D G3DSA:3.40.50.720 4 234 2.1E-52 T 31-10-2018 Y89_1570 f51a199ddffcbf96dfbd28cdb18200ce 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF52016 161 372 3.57E-70 T 31-10-2018 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.9E-96 T 31-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.30.499.10 405 532 8.0E-150 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF53732 379 858 4.71E-148 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.9E-67 T 31-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.20.19.10 162 361 8.5E-77 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.30.499.10 686 867 5.0E-66 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 857 0.0 T 31-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:1.25.40.310 1 161 8.5E-72 T 31-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Pfam PF00330 Aconitase family (aconitate hydratase) 475 821 2.5E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 Gene3D G3DSA:3.40.1060.10 385 684 8.0E-150 T 31-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 SUPERFAMILY SSF74778 2 160 1.06E-68 T 31-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3545 c0640becf0762a86a9a01a5bfcc8ce06 869 PIRSF PIRSF036687 1 862 0.0 T 31-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Y89_3501 da63f311b437b57863b3e84822cee4ab 255 Gene3D G3DSA:3.40.50.720 1 254 4.2E-79 T 31-10-2018 Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 9.4E-41 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3501 da63f311b437b57863b3e84822cee4ab 255 SUPERFAMILY SSF51735 10 253 6.22E-83 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3501 da63f311b437b57863b3e84822cee4ab 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 253 1.4E-65 T 31-10-2018 Y89_4583 ea856689010d94fc328e337dd9241272 252 SUPERFAMILY SSF53335 27 250 1.46E-33 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4583 ea856689010d94fc328e337dd9241272 252 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 11 251 8.7E-87 T 31-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y89_4583 ea856689010d94fc328e337dd9241272 252 Pfam PF13649 Methyltransferase domain 68 168 9.2E-12 T 31-10-2018 Y89_4583 ea856689010d94fc328e337dd9241272 252 PIRSF PIRSF006325 7 252 8.8E-115 T 31-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y89_4583 ea856689010d94fc328e337dd9241272 252 Gene3D G3DSA:3.40.50.150 24 252 5.6E-54 T 31-10-2018 Y89_4583 ea856689010d94fc328e337dd9241272 252 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 9 252 40.533 T 31-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 Y89_4573 8317d726d026f7064ab915f66879cc29 212 SUPERFAMILY SSF52218 1 210 1.05E-48 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4573 8317d726d026f7064ab915f66879cc29 212 Pfam PF02525 Flavodoxin-like fold 3 207 8.0E-44 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_4573 8317d726d026f7064ab915f66879cc29 212 Gene3D G3DSA:3.40.50.360 1 212 7.0E-65 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4573 8317d726d026f7064ab915f66879cc29 212 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 209 29.269 T 31-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 616 2.0E-282 T 31-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Gene3D G3DSA:2.60.34.10 379 518 3.6E-50 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Gene3D G3DSA:3.30.420.40 194 361 3.4E-109 T 31-10-2018 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 617 45.471 T 31-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Gene3D G3DSA:3.30.420.40 22 374 3.4E-109 T 31-10-2018 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Gene3D G3DSA:3.90.640.10 238 311 3.4E-109 T 31-10-2018 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Pfam PF00012 Hsp70 protein 21 600 1.7E-182 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 SUPERFAMILY SSF100934 504 615 2.75E-33 T 31-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 Gene3D G3DSA:1.20.1270.10 520 616 1.4E-25 T 31-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 SUPERFAMILY SSF53067 200 376 1.57E-47 T 31-10-2018 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 SUPERFAMILY SSF100920 384 535 2.75E-50 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 385 404 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 466 482 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 211 221 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 152 172 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.4E-56 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_1216 3e35ed66ee717e4d90ffb655078f6f91 619 SUPERFAMILY SSF53067 19 197 1.72E-51 T 31-10-2018 Y89_2398 94c9df8836eb7ca02306287aa8268236 746 Pfam PF00593 TonB dependent receptor 282 744 8.2E-57 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2398 94c9df8836eb7ca02306287aa8268236 746 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 729 746 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_2398 94c9df8836eb7ca02306287aa8268236 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 168 2.5E-27 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2398 94c9df8836eb7ca02306287aa8268236 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 55 746 3.1E-102 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2398 94c9df8836eb7ca02306287aa8268236 746 SUPERFAMILY SSF56935 39 746 5.19E-133 T 31-10-2018 Y89_2398 94c9df8836eb7ca02306287aa8268236 746 Gene3D G3DSA:2.40.170.20 179 746 2.0E-220 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2398 94c9df8836eb7ca02306287aa8268236 746 Gene3D G3DSA:2.170.130.10 35 173 4.7E-43 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 8.6E-38 T 31-10-2018 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 113 2.3E-11 T 31-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 911 3.3E-37 T 31-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF13244 Domain of unknown function (DUF4040) 611 674 1.7E-17 T 31-10-2018 IPR025383 Domain of unknown function DUF4040 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 Pfam PF00361 Proton-conducting membrane transporter 126 401 1.9E-64 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 351 373 4.9E-5 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 77 97 4.9E-5 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_4300 5b120f839c1ce69d12960eaecb254e34 933 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 256 278 4.9E-5 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Y89_0576 4c346e45de1b5465b3dc2d2a3d1eea84 113 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 36 104 1.4E-12 T 31-10-2018 IPR018660 C-type lysozyme inhibitor Y89_0576 4c346e45de1b5465b3dc2d2a3d1eea84 113 SUPERFAMILY SSF141488 32 111 1.44E-15 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily Y89_0576 4c346e45de1b5465b3dc2d2a3d1eea84 113 Gene3D G3DSA:2.40.128.200 31 113 9.9E-8 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily Y89_0490 2dc358064b21e98de134db18a151caef 285 Gene3D G3DSA:3.60.40.10 9 265 3.3E-8 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0490 2dc358064b21e98de134db18a151caef 285 Pfam PF13672 Protein phosphatase 2C 8 253 1.4E-42 T 31-10-2018 Y89_0490 2dc358064b21e98de134db18a151caef 285 SUPERFAMILY SSF81606 15 223 2.88E-7 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 SMART SM00382 358 544 2.2E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 Gene3D G3DSA:1.20.1560.10 9 317 6.5E-37 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 Gene3D G3DSA:3.40.50.300 319 570 1.1E-66 T 31-10-2018 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 SUPERFAMILY SSF52540 322 556 3.7E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 Pfam PF00664 ABC transporter transmembrane region 34 282 2.0E-12 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 558 1.3E-252 T 31-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 Pfam PF00005 ABC transporter 349 496 1.8E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4105 92338cd5cfcc27cd78584fee2eeeca31 593 SUPERFAMILY SSF90123 19 320 5.76E-45 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 7 479 4.2E-173 T 31-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 Gene3D G3DSA:2.60.120.10 369 470 1.1E-14 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 SUPERFAMILY SSF51182 191 480 3.09E-79 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 SUPERFAMILY SSF53448 8 292 3.58E-67 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 1.1E-63 T 31-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 Gene3D G3DSA:3.90.550.10 7 360 1.1E-112 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3023 c775843494b038fe5fb0ab81f9f61fb6 488 Pfam PF00483 Nucleotidyl transferase 9 296 2.4E-59 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 269 291 1.5E-7 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 37 55 1.5E-7 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 103 116 1.5E-7 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 PRINTS PR00412 Epoxide hydrolase signature 117 130 1.5E-7 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 Gene3D G3DSA:3.40.50.1820 1 300 5.9E-93 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 Pfam PF00561 alpha/beta hydrolase fold 31 145 3.2E-20 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3188 0ad0041f50424c518a9f9cfaadd29b40 300 SUPERFAMILY SSF53474 4 295 3.06E-64 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5231 ced2aa7246fb5de7e686405b9ebe9464 403 Pfam PF05977 Transmembrane secretion effector 9 389 4.0E-35 T 31-10-2018 IPR010290 Transmembrane secretion effector Y89_5231 ced2aa7246fb5de7e686405b9ebe9464 403 Gene3D G3DSA:1.20.1250.20 8 391 6.7E-31 T 31-10-2018 Y89_5231 ced2aa7246fb5de7e686405b9ebe9464 403 SUPERFAMILY SSF103473 5 399 1.12E-37 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 SUPERFAMILY SSF46785 18 84 6.81E-13 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 SMART SM00345 22 80 4.8E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 Gene3D G3DSA:1.20.120.530 86 228 1.6E-20 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 Pfam PF07729 FCD domain 101 219 1.8E-18 T 31-10-2018 IPR011711 GntR, C-terminal Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 SMART SM00895 90 220 5.8E-12 T 31-10-2018 IPR011711 GntR, C-terminal Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 SUPERFAMILY SSF48008 101 227 6.8E-19 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 Gene3D G3DSA:1.10.10.10 20 81 5.2E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0837 443f9e78f7187e816fb1e86599a15ba5 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 77 2.1E-10 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 Pfam PF00561 alpha/beta hydrolase fold 35 143 5.8E-18 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 15 262 3.2E-81 T 31-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 SUPERFAMILY SSF53474 8 262 2.46E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 3.0E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 209 223 3.0E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 3.0E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 3.0E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0501 513f39b5cfc61c8f04180d786a2daf7b 265 Gene3D G3DSA:3.40.50.1820 1 263 1.5E-83 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1433 47372a7a92142b851852e18c56497d4e 575 Gene3D G3DSA:1.20.140.10 288 445 2.5E-37 T 31-10-2018 Y89_1433 47372a7a92142b851852e18c56497d4e 575 Gene3D G3DSA:2.40.110.20 135 287 3.2E-45 T 31-10-2018 Y89_1433 47372a7a92142b851852e18c56497d4e 575 SUPERFAMILY SSF47203 285 445 4.99E-39 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_1433 47372a7a92142b851852e18c56497d4e 575 SUPERFAMILY SSF56645 101 296 1.23E-40 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1433 47372a7a92142b851852e18c56497d4e 575 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 178 276 3.1E-16 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_1433 47372a7a92142b851852e18c56497d4e 575 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 443 6.3E-35 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_1433 47372a7a92142b851852e18c56497d4e 575 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 402 421 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_4395 d40667151868dd96623c0c5c1d834ac0 69 Hamap MF_00715 Protein SlyX [slyX]. 2 69 17.239 T 31-10-2018 IPR007236 SlyX Y89_4395 d40667151868dd96623c0c5c1d834ac0 69 Pfam PF04102 SlyX 3 69 4.3E-24 T 31-10-2018 IPR007236 SlyX Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 Gene3D G3DSA:1.10.287.950 218 549 9.0E-60 T 31-10-2018 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 307 336 2.1E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 411 2.1E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 490 2.1E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 2.1E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.1E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 SUPERFAMILY SSF58104 239 548 1.06E-56 T 31-10-2018 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 SMART SM00304 219 271 1.4E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 SMART SM00283 286 547 5.8E-39 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 Pfam PF00672 HAMP domain 220 266 2.8E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2570 0d602bd99655dbb1d1469fa12115cd75 552 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 514 8.8E-32 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0791 9f795b028f6bc778ba11a448cecfa61b 476 Pfam PF00425 chorismate binding enzyme 200 452 3.2E-73 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_0791 9f795b028f6bc778ba11a448cecfa61b 476 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 108 460 2.3E-121 T 31-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 Y89_0791 9f795b028f6bc778ba11a448cecfa61b 476 SUPERFAMILY SSF56322 33 460 2.88E-100 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_0791 9f795b028f6bc778ba11a448cecfa61b 476 Gene3D G3DSA:3.60.120.10 14 463 1.1E-101 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_3719 edcbd1adab4f8e96405e961fbc277879 154 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 2 136 1.2E-26 T 31-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 Y89_3719 edcbd1adab4f8e96405e961fbc277879 154 SUPERFAMILY SSF53254 2 136 2.91E-23 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_3719 edcbd1adab4f8e96405e961fbc277879 154 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 69 6.1E-14 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_3719 edcbd1adab4f8e96405e961fbc277879 154 Gene3D G3DSA:3.40.50.1240 1 153 2.8E-34 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_3719 edcbd1adab4f8e96405e961fbc277879 154 SMART SM00855 2 110 3.4E-9 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_4293 b84a7b48b896269c241b8b73b7cd52a4 365 Gene3D G3DSA:3.40.50.1100 52 158 5.1E-67 T 31-10-2018 Y89_4293 b84a7b48b896269c241b8b73b7cd52a4 365 SUPERFAMILY SSF53686 24 337 1.57E-67 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_4293 b84a7b48b896269c241b8b73b7cd52a4 365 Gene3D G3DSA:3.40.50.1100 26 324 5.1E-67 T 31-10-2018 Y89_4293 b84a7b48b896269c241b8b73b7cd52a4 365 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 317 5.0E-43 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 SUPERFAMILY SSF81333 3 78 1.15E-18 T 31-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.5E-6 T 31-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.5E-6 T 31-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.5E-6 T 31-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 Gene3D G3DSA:1.20.20.10 1 77 1.7E-27 T 31-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 31-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 14.112 T 31-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.4E-29 T 31-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y89_6299 7bf68f8f528bc902ec655bdd00814742 85 Pfam PF00137 ATP synthase subunit C 10 72 3.7E-9 T 31-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 2.1E-133 T 31-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 Gene3D G3DSA:3.40.50.620 1 305 7.3E-135 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 Pfam PF09190 DALR domain 340 401 8.1E-23 T 31-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 SMART SM00840 340 401 7.6E-27 T 31-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.7E-30 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 2.7E-30 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 2.7E-30 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.7E-30 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 Gene3D G3DSA:1.20.120.640 306 458 5.1E-50 T 31-10-2018 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 SUPERFAMILY SSF52374 3 312 6.14E-102 T 31-10-2018 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 SUPERFAMILY SSF47323 316 458 2.22E-41 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 459 39.105 T 31-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Y89_3537 65e0b5185147fa2730f12aad0e7f2577 460 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 457 9.9E-177 T 31-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Y89_1878 fb0010c6bbe25e9aad0b7caff39b2a5d 665 Gene3D G3DSA:3.40.50.720 297 644 4.5E-113 T 31-10-2018 Y89_1878 fb0010c6bbe25e9aad0b7caff39b2a5d 665 Gene3D G3DSA:3.40.50.720 162 282 7.1E-30 T 31-10-2018 Y89_1878 fb0010c6bbe25e9aad0b7caff39b2a5d 665 SUPERFAMILY SSF51735 299 587 6.35E-52 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1878 fb0010c6bbe25e9aad0b7caff39b2a5d 665 SUPERFAMILY SSF53335 159 345 5.65E-17 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1878 fb0010c6bbe25e9aad0b7caff39b2a5d 665 Pfam PF02719 Polysaccharide biosynthesis protein 301 608 8.9E-129 T 31-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Y89_0420 5711ff3898af9d9ff42295a4a5146611 299 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 289 4.2E-88 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_0420 5711ff3898af9d9ff42295a4a5146611 299 Gene3D G3DSA:1.20.1510.10 15 208 9.5E-45 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_0420 5711ff3898af9d9ff42295a4a5146611 299 Pfam PF01545 Cation efflux family 19 208 3.1E-45 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_0420 5711ff3898af9d9ff42295a4a5146611 299 SUPERFAMILY SSF161111 13 209 1.22E-55 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_0420 5711ff3898af9d9ff42295a4a5146611 299 SUPERFAMILY SSF160240 213 286 3.79E-8 T 31-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Y89_3677 885429cfa6d0d7927d88552308bbf46b 168 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 3 158 5.7E-51 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_3677 885429cfa6d0d7927d88552308bbf46b 168 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 6 158 8.8E-53 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_3677 885429cfa6d0d7927d88552308bbf46b 168 PIRSF PIRSF028301 1 168 8.4E-57 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_5959 e9cc881031807fd427e943db753a8c91 114 Gene3D G3DSA:3.40.190.10 29 63 1.1E-5 T 31-10-2018 Y89_5959 e9cc881031807fd427e943db753a8c91 114 SUPERFAMILY SSF53850 30 107 3.8E-8 T 31-10-2018 Y89_5959 e9cc881031807fd427e943db753a8c91 114 Gene3D G3DSA:3.40.190.10 69 106 1.1E-5 T 31-10-2018 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 Pfam PF01012 Electron transfer flavoprotein domain 4 169 2.3E-39 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 SUPERFAMILY SSF52467 187 308 1.45E-48 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 PIRSF PIRSF000089 1 309 2.7E-106 T 31-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 31-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 Gene3D G3DSA:3.40.50.1220 184 309 6.0E-58 T 31-10-2018 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 Gene3D G3DSA:3.40.50.620 2 183 8.4E-56 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 7.0E-37 T 31-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 SUPERFAMILY SSF52402 3 184 1.34E-56 T 31-10-2018 Y89_2069 2bc4dcec2dafa431f0e2d3394902314f 309 SMART SM00893 3 182 2.8E-55 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_0079 b82799cf868a597956b7893df6e9ec44 352 Pfam PF04055 Radical SAM superfamily 67 245 2.9E-13 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_0079 b82799cf868a597956b7893df6e9ec44 352 SMART SM00729 63 288 9.4E-4 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_0079 b82799cf868a597956b7893df6e9ec44 352 SUPERFAMILY SSF102114 48 261 2.09E-12 T 31-10-2018 Y89_0079 b82799cf868a597956b7893df6e9ec44 352 Gene3D G3DSA:3.20.20.70 65 278 2.9E-9 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0553 cd92d3cca96153096beeef67b38279cc 238 Gene3D G3DSA:3.40.50.880 1 230 1.3E-54 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0553 cd92d3cca96153096beeef67b38279cc 238 SUPERFAMILY SSF52317 1 187 5.88E-51 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0553 cd92d3cca96153096beeef67b38279cc 238 Pfam PF00117 Glutamine amidotransferase class-I 41 181 2.6E-13 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_1001 e528bcd9bdd4ea0ebab06a4c9575d18b 482 Pfam PF13520 Amino acid permease 63 451 6.2E-40 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_1001 e528bcd9bdd4ea0ebab06a4c9575d18b 482 TIGRFAM TIGR00908 2A0305: ethanolamine permease 26 470 7.2E-220 T 31-10-2018 IPR004757 Ethanolamine permease Y89_1001 e528bcd9bdd4ea0ebab06a4c9575d18b 482 Gene3D G3DSA:1.20.1740.10 30 473 6.3E-55 T 31-10-2018 Y89_1001 e528bcd9bdd4ea0ebab06a4c9575d18b 482 PIRSF PIRSF006060 11 479 5.3E-70 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_1908 3460e9982081747ae6a2701c98940446 429 SUPERFAMILY SSF53244 286 422 2.75E-26 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_1908 3460e9982081747ae6a2701c98940446 429 Gene3D G3DSA:3.90.190.20 286 428 1.0E-25 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_1908 3460e9982081747ae6a2701c98940446 429 SUPERFAMILY SSF53623 3 283 4.58E-87 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_1908 3460e9982081747ae6a2701c98940446 429 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 420 1.4E-92 T 31-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Y89_1908 3460e9982081747ae6a2701c98940446 429 Pfam PF08245 Mur ligase middle domain 47 186 2.6E-11 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_1908 3460e9982081747ae6a2701c98940446 429 PIRSF PIRSF001563 1 426 2.0E-100 T 31-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Y89_1908 3460e9982081747ae6a2701c98940446 429 Gene3D G3DSA:3.40.1190.10 1 284 1.1E-88 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 Gene3D G3DSA:3.40.190.10 88 285 1.7E-62 T 31-10-2018 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 SUPERFAMILY SSF53850 88 293 1.45E-42 T 31-10-2018 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 Gene3D G3DSA:3.40.190.10 162 267 1.7E-62 T 31-10-2018 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 Gene3D G3DSA:1.10.10.10 1 85 1.0E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 Pfam PF03466 LysR substrate binding domain 87 291 1.1E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1432 e8b9a5167ab0573500746ec6bba3f30e 295 SUPERFAMILY SSF46785 1 80 2.42E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 Pfam PF08497 Radical SAM N-terminal 23 378 4.0E-146 T 31-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 SUPERFAMILY SSF102114 370 620 4.45E-14 T 31-10-2018 Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 Pfam PF11842 Domain of unknown function (DUF3362) 593 723 1.1E-52 T 31-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 Pfam PF04055 Radical SAM superfamily 379 584 4.5E-22 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 Gene3D G3DSA:3.80.30.20 374 635 1.1E-15 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 SMART SM00729 375 628 1.4E-7 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 379 399 - T 31-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 643 4.7E-264 T 31-10-2018 IPR022946 Uncharacterised protein family UPF0313 Y89_5598 2f96bab66410f3f90d4f1c940b823226 747 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 645 49.862 T 31-10-2018 IPR022946 Uncharacterised protein family UPF0313 Y89_5557 9837704bdd221113ee0d147cfe0bc7c0 362 Pfam PF00487 Fatty acid desaturase 64 332 1.1E-30 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_4386 837454363ec04cbb9713d3f1c6e376c8 231 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 9 229 45.879 T 31-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Y89_4386 837454363ec04cbb9713d3f1c6e376c8 231 Pfam PF01618 MotA/TolQ/ExbB proton channel family 82 210 4.3E-44 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_4386 837454363ec04cbb9713d3f1c6e376c8 231 TIGRFAM TIGR02796 tolQ: protein TolQ 10 224 5.0E-91 T 31-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Y89_2165 6f38a9eb804f5c394c65049cd37ee09c 227 Gene3D G3DSA:3.40.50.300 3 227 2.6E-69 T 31-10-2018 Y89_2165 6f38a9eb804f5c394c65049cd37ee09c 227 SUPERFAMILY SSF52540 5 223 4.33E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2165 6f38a9eb804f5c394c65049cd37ee09c 227 SMART SM00382 34 220 9.2E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2165 6f38a9eb804f5c394c65049cd37ee09c 227 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2165 6f38a9eb804f5c394c65049cd37ee09c 227 Pfam PF00005 ABC transporter 25 171 9.7E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_6105 a25ba2295316593eaacb6926553fffe4 558 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 290 550 2.0E-74 T 31-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Y89_6105 a25ba2295316593eaacb6926553fffe4 558 Gene3D G3DSA:1.10.3720.10 304 552 1.9E-32 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6105 a25ba2295316593eaacb6926553fffe4 558 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 326 551 6.5E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_6105 a25ba2295316593eaacb6926553fffe4 558 SUPERFAMILY SSF161098 285 540 2.75E-37 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 Pfam PF00005 ABC transporter 345 493 8.2E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 SUPERFAMILY SSF90123 5 318 1.57E-35 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 Gene3D G3DSA:1.20.1560.10 2 317 2.8E-31 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 SUPERFAMILY SSF52540 322 563 1.57E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 ProSitePatterns PS00211 ABC transporters family signature. 465 479 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 Gene3D G3DSA:3.40.50.300 321 568 7.4E-71 T 31-10-2018 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 Pfam PF00664 ABC transporter transmembrane region 53 184 4.4E-9 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_0799 e3363cc5ce10b8f71990b9fc4b0af9de 570 SMART SM00382 354 545 1.2E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2883 e2f40bbcb475ef61a69ee2020b7965d1 191 Pfam PF11985 Protein of unknown function (DUF3486) 1 189 1.0E-38 T 31-10-2018 IPR021874 Bacteriophage Mu, Gp27 Y89_5459 e2f40bbcb475ef61a69ee2020b7965d1 191 Pfam PF11985 Protein of unknown function (DUF3486) 1 189 1.0E-38 T 31-10-2018 IPR021874 Bacteriophage Mu, Gp27 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Gene3D G3DSA:3.20.20.60 509 839 1.3E-108 T 31-10-2018 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Gene3D G3DSA:2.70.70.10 1 152 2.0E-43 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Pfam PF05524 PEP-utilising enzyme, N-terminal 284 403 4.5E-21 T 31-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 SUPERFAMILY SSF51621 530 819 3.93E-96 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Pfam PF00381 PTS HPr component phosphorylation site 178 254 1.7E-17 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 SUPERFAMILY SSF47831 313 420 2.88E-24 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 SUPERFAMILY SSF55594 178 255 1.26E-18 T 31-10-2018 IPR035895 HPr-like superfamily Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 178 253 4.6E-17 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 527 811 2.6E-95 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 SUPERFAMILY SSF51261 2 150 1.66E-47 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 287 832 3.7E-129 T 31-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 211 226 - T 31-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 9 128 5.4E-37 T 31-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 185 192 - T 31-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 770 782 8.9E-20 T 31-10-2018 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 717 732 8.9E-20 T 31-10-2018 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 568 587 8.9E-20 T 31-10-2018 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 734 749 8.9E-20 T 31-10-2018 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Pfam PF00391 PEP-utilising enzyme, mobile domain 427 500 8.4E-18 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 717 735 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 SUPERFAMILY SSF52009 402 514 6.28E-26 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Gene3D G3DSA:1.10.274.10 302 423 5.8E-53 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 70 82 - T 31-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Gene3D G3DSA:3.30.1340.10 175 257 1.6E-18 T 31-10-2018 IPR035895 HPr-like superfamily Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR00107 Phosphocarrier protein signature 185 201 2.2E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR00107 Phosphocarrier protein signature 210 225 2.2E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 PRINTS PR00107 Phosphocarrier protein signature 225 242 2.2E-10 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 8 130 3.3E-40 T 31-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Y89_1267 2ee4482989c5ce0ca78e3fb666cde929 842 Gene3D G3DSA:3.50.30.10 285 508 5.8E-53 T 31-10-2018 Y89_5311 59a733e2ff1e2d557be86e79b0124e55 259 SUPERFAMILY SSF48452 159 255 1.28E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5311 59a733e2ff1e2d557be86e79b0124e55 259 Gene3D G3DSA:1.25.40.10 136 257 1.7E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3824 2257b730ccedd69223f7343a2ebcfa78 169 Gene3D G3DSA:2.60.120.480 1 169 1.0E-65 T 31-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y89_3824 2257b730ccedd69223f7343a2ebcfa78 169 Hamap MF_00616 Ureidoglycolate lyase [allA]. 2 163 42.469 T 31-10-2018 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y89_3824 2257b730ccedd69223f7343a2ebcfa78 169 PIRSF PIRSF017306 2 162 1.6E-49 T 31-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y89_3824 2257b730ccedd69223f7343a2ebcfa78 169 SUPERFAMILY SSF51182 1 162 3.47E-58 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3824 2257b730ccedd69223f7343a2ebcfa78 169 Pfam PF04115 Ureidoglycolate lyase 2 158 2.9E-53 T 31-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 Y89_5078 d8f55104d0dc84a58e85340d92b14ebc 162 PIRSF PIRSF002070 1 160 3.8E-18 T 31-10-2018 Y89_5078 d8f55104d0dc84a58e85340d92b14ebc 162 SUPERFAMILY SSF50249 4 162 2.71E-29 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5078 d8f55104d0dc84a58e85340d92b14ebc 162 Gene3D G3DSA:2.40.50.140 4 155 2.3E-22 T 31-10-2018 Y89_5078 d8f55104d0dc84a58e85340d92b14ebc 162 Pfam PF00436 Single-strand binding protein family 5 110 3.6E-12 T 31-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y89_5078 d8f55104d0dc84a58e85340d92b14ebc 162 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 8 161 1.5E-16 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y89_5256 73fd2ec8c93cf132f4c266c431a5a7d8 185 SUPERFAMILY SSF53271 14 183 2.1E-43 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_5256 73fd2ec8c93cf132f4c266c431a5a7d8 185 Gene3D G3DSA:3.40.50.2020 3 184 2.9E-51 T 31-10-2018 Y89_5256 73fd2ec8c93cf132f4c266c431a5a7d8 185 Pfam PF00156 Phosphoribosyl transferase domain 18 145 2.2E-24 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 1.3E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 1.3E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 Gene3D G3DSA:1.10.10.60 234 339 1.7E-23 T 31-10-2018 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 SMART SM00342 254 336 3.6E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 SUPERFAMILY SSF46689 289 337 4.18E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 Pfam PF12833 Helix-turn-helix domain 261 337 6.3E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4529 faf70e1d522bf27ebfbde00aaf833cd7 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 211 2.0E-40 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_4844 5a26a56179be21107ea821788695ead6 75 Gene3D G3DSA:2.30.30.90 8 75 7.3E-30 T 31-10-2018 IPR038157 Ferrous iron transporter, core domain Y89_4844 5a26a56179be21107ea821788695ead6 75 SMART SM00899 1 73 5.1E-12 T 31-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Y89_4844 5a26a56179be21107ea821788695ead6 75 Pfam PF04023 FeoA domain 2 65 2.7E-11 T 31-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Y89_4844 5a26a56179be21107ea821788695ead6 75 SUPERFAMILY SSF50037 3 71 2.98E-17 T 31-10-2018 IPR008988 Transcriptional repressor, C-terminal Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.30 1740 1996 1.8E-131 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF53474 4104 4303 3.14E-35 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF47336 4030 4103 3.8E-17 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3554 3952 2.4E-131 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 530 933 3.8E-137 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2041 2444 4.9E-120 T 31-10-2018 IPR010071 Amino acid adenylation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:1.10.1200.10 2526 2602 8.4E-26 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:1.10.1200.10 1014 1091 4.3E-25 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00455 Putative AMP-binding domain signature. 654 665 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00550 Phosphopantetheine attachment site 1025 1085 8.4E-14 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00550 Phosphopantetheine attachment site 4040 4103 2.1E-12 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00550 Phosphopantetheine attachment site 2537 2599 4.1E-13 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF56801 1979 2548 7.2E-150 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.30 229 476 1.1E-157 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 1098 1296 2.45E-42 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 1284 1537 5.78E-46 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00501 AMP-binding enzyme 2021 2420 1.0E-83 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00501 AMP-binding enzyme 3533 3928 1.1E-101 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00501 AMP-binding enzyme 510 909 2.6E-102 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 2609 2808 1.05E-41 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF47336 1016 1086 1.13E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.40.50.12780 499 901 1.8E-142 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.40.50.12780 2010 2412 1.3E-127 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.40.50.12780 3523 3920 2.7E-136 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SMART SM00824 Thioesterase 4126 4318 0.0066 T 31-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.300.30 2413 2525 4.7E-36 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.300.30 902 1013 1.6E-34 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SMART SM00823 Phosphopantetheine attachment site 4038 4107 0.04 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SMART SM00823 Phosphopantetheine attachment site 2535 2603 0.0036 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SMART SM00823 Phosphopantetheine attachment site 1024 1090 0.051 T 31-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 2795 3045 4.45E-47 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.10 2603 2778 1.3E-53 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.10 1092 1266 3.8E-54 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 3253 3501 6.89E-57 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.30 3254 3509 1.4E-134 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 3082 3252 1.22E-44 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.300.30 3922 4025 3.0E-32 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2162 2173 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 1739 2005 4.45E-56 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.10 1570 1931 1.8E-131 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 231 478 6.45E-65 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4062 4077 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF47336 2527 2599 1.19E-19 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:1.10.1200.10 4026 4106 6.6E-25 T 31-10-2018 IPR036736 ACP-like superfamily Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF56801 493 1037 1.57E-160 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.30 2779 3050 2.6E-82 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.30 1267 1538 2.0E-86 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3675 3686 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF13193 AMP-binding enzyme C-terminal domain 917 998 9.6E-10 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF13193 AMP-binding enzyme C-terminal domain 2428 2509 9.5E-12 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF13193 AMP-binding enzyme C-terminal domain 3936 4012 2.1E-9 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1402 1557 1.4E-44 T 31-10-2018 IPR010060 Non-ribosomal peptide synthase Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2915 3069 1.0E-44 T 31-10-2018 IPR010060 Non-ribosomal peptide synthase Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.10 3082 3444 1.4E-134 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.30.559.10 52 420 1.1E-157 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00668 Condensation domain 1565 1999 2.8E-85 T 31-10-2018 IPR001242 Condensation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00668 Condensation domain 51 490 3.1E-113 T 31-10-2018 IPR001242 Condensation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00668 Condensation domain 1102 1544 2.7E-79 T 31-10-2018 IPR001242 Condensation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00668 Condensation domain 2614 3055 1.2E-81 T 31-10-2018 IPR001242 Condensation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00668 Condensation domain 3077 3510 4.3E-87 T 31-10-2018 IPR001242 Condensation domain Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Pfam PF00975 Thioesterase domain 4124 4274 2.7E-23 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF56801 3492 4051 1.09E-158 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 Gene3D G3DSA:3.40.50.1820 4107 4362 1.2E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 52 225 1.56E-54 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2559 2574 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 SUPERFAMILY SSF52777 1570 1738 1.11E-42 T 31-10-2018 Y89_2800 cde9c4666f7fdbe2efd6988e57e36cbf 4372 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1048 1063 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site Y89_1577 c33d5ba4beb8db643a031949eb5038ce 259 Gene3D G3DSA:3.40.225.10 9 259 2.7E-72 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_1577 c33d5ba4beb8db643a031949eb5038ce 259 SMART SM01007 24 203 4.8E-56 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_1577 c33d5ba4beb8db643a031949eb5038ce 259 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 25 203 3.6E-43 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_1577 c33d5ba4beb8db643a031949eb5038ce 259 SUPERFAMILY SSF53639 19 220 2.55E-57 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_3340 05baaa9c9f29047d938a00b6cf7a0396 145 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 11 143 1.0E-63 T 31-10-2018 IPR030991 Cytochrome c-550 PedF Y89_3340 05baaa9c9f29047d938a00b6cf7a0396 145 Gene3D G3DSA:1.10.760.10 46 144 5.6E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3340 05baaa9c9f29047d938a00b6cf7a0396 145 SUPERFAMILY SSF46626 11 141 4.66E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3340 05baaa9c9f29047d938a00b6cf7a0396 145 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 62 138 8.5E-14 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0421 5720834efb8e6b1a5a6b3ed0246f3e9d 134 Pfam PF05154 TM2 domain 74 119 7.7E-15 T 31-10-2018 IPR007829 TM2 domain Y89_0421 5720834efb8e6b1a5a6b3ed0246f3e9d 134 Pfam PF05154 TM2 domain 8 54 5.1E-15 T 31-10-2018 IPR007829 TM2 domain Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 Gene3D G3DSA:2.140.10.20 100 487 1.3E-119 T 31-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 SUPERFAMILY SSF51004 102 485 5.62E-90 T 31-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 21 92 2.9E-13 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 Gene3D G3DSA:1.10.760.10 13 98 1.4E-17 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 SUPERFAMILY SSF46626 7 111 4.94E-20 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0530 e2c28a98f222c7b2271a6ccb406f8fd3 493 Pfam PF02239 Cytochrome D1 heme domain 129 484 2.9E-149 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 475 489 5.7E-5 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 511 527 5.7E-5 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 SUPERFAMILY SSF52317 437 624 1.12E-22 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Pfam PF00425 chorismate binding enzyme 122 381 5.5E-47 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 511 522 2.8E-9 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 478 487 2.8E-9 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 597 610 2.8E-9 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Gene3D G3DSA:3.60.120.10 2 391 2.1E-134 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 SUPERFAMILY SSF56322 66 390 1.07E-66 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Gene3D G3DSA:3.40.50.880 436 625 2.6E-46 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 Pfam PF00117 Glutamine amidotransferase class-I 439 618 1.6E-25 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 511 522 3.6E-8 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 597 610 3.6E-8 T 31-10-2018 Y89_0808 b1c7a3ebe3d5ad7cd399dee68de47cb7 627 PRINTS PR00097 Anthranilate synthase component II signature 437 451 3.6E-8 T 31-10-2018 Y89_3772 2aa12a5758b629c8b53c113002cedee0 79 Gene3D G3DSA:3.30.110.40 1 77 5.9E-29 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_3772 2aa12a5758b629c8b53c113002cedee0 79 Pfam PF01206 Sulfurtransferase TusA 8 76 3.6E-24 T 31-10-2018 IPR001455 TusA-like domain Y89_3772 2aa12a5758b629c8b53c113002cedee0 79 SUPERFAMILY SSF64307 4 76 2.62E-25 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_3772 2aa12a5758b629c8b53c113002cedee0 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 9 33 - T 31-10-2018 IPR001455 TusA-like domain Y89_3772 2aa12a5758b629c8b53c113002cedee0 79 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 1 78 25.787 T 31-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 Y89_1818 4f3dab0e2991357d271e248200157c58 332 SUPERFAMILY SSF46785 87 163 6.89E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1818 4f3dab0e2991357d271e248200157c58 332 SUPERFAMILY SSF46785 5 86 3.81E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1818 4f3dab0e2991357d271e248200157c58 332 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 8 174 1.2E-33 T 31-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Y89_1818 4f3dab0e2991357d271e248200157c58 332 Pfam PF04079 Segregation and condensation complex subunit ScpB 12 172 2.5E-49 T 31-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Y89_1818 4f3dab0e2991357d271e248200157c58 332 Gene3D G3DSA:1.10.10.10 86 182 1.8E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1818 4f3dab0e2991357d271e248200157c58 332 Gene3D G3DSA:1.10.10.10 4 85 1.2E-11 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6122 dad31dc771383a647bccd9b87dab291e 321 Gene3D G3DSA:3.40.50.1820 8 314 6.4E-73 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6122 dad31dc771383a647bccd9b87dab291e 321 Pfam PF07859 alpha/beta hydrolase fold 82 287 2.6E-65 T 31-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 Y89_6122 dad31dc771383a647bccd9b87dab291e 321 SUPERFAMILY SSF53474 49 291 1.11E-55 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6122 dad31dc771383a647bccd9b87dab291e 321 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 154 166 - T 31-10-2018 IPR033140 Lipase, GDXG, putative serine active site Y89_5144 659c77dfdcc2a4bc15f4e9f9b66ca9bb 503 Pfam PF13817 IS66 C-terminal element 458 495 6.4E-16 T 31-10-2018 IPR039552 Transposase IS66, C-terminal Y89_5144 659c77dfdcc2a4bc15f4e9f9b66ca9bb 503 Pfam PF13007 Transposase C of IS166 homeodomain 34 105 3.5E-15 T 31-10-2018 IPR024463 Transposase TnpC, homeodomain Y89_5144 659c77dfdcc2a4bc15f4e9f9b66ca9bb 503 Pfam PF13005 zinc-finger binding domain of transposase IS66 114 156 9.7E-14 T 31-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 Y89_5144 659c77dfdcc2a4bc15f4e9f9b66ca9bb 503 Pfam PF03050 Transposase IS66 family 170 451 9.2E-103 T 31-10-2018 IPR004291 Transposase, IS66 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 233 6.0E-20 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:1.20.140.10 246 401 2.7E-36 T 31-10-2018 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:1.10.540.10 1 130 9.2E-57 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 SUPERFAMILY SSF47203 243 401 3.87E-44 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Gene3D G3DSA:2.40.110.10 131 245 2.6E-50 T 31-10-2018 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 128 6.7E-18 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 245 393 1.9E-32 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2640 488bf81bed2c3378330cfc07d7968401 409 SUPERFAMILY SSF56645 1 258 1.44E-72 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 Gene3D G3DSA:1.10.10.10 7 93 5.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 Gene3D G3DSA:3.40.190.10 103 269 9.3E-55 T 31-10-2018 Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 72 1.1E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 SUPERFAMILY SSF53850 97 289 2.17E-30 T 31-10-2018 Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 Pfam PF03466 LysR substrate binding domain 97 285 4.5E-31 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 SUPERFAMILY SSF46785 9 119 1.58E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1029 593bc3ba3793eb256c06d83fc98cd2a9 297 Gene3D G3DSA:3.40.190.10 170 263 9.3E-55 T 31-10-2018 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Gene3D G3DSA:3.30.1490.20 123 196 1.9E-33 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 SUPERFAMILY SSF52440 3 112 1.73E-34 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Gene3D G3DSA:3.30.470.20 197 391 1.6E-61 T 31-10-2018 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 392 53.54 T 31-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 392 2.3E-198 T 31-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Pfam PF02222 ATP-grasp domain 123 295 8.2E-55 T 31-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Gene3D G3DSA:3.40.50.20 2 122 2.1E-54 T 31-10-2018 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 SUPERFAMILY SSF56059 120 386 1.81E-58 T 31-10-2018 Y89_1276 c246a842e7418c81de5fee4e2273815c 393 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.7E-4 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 SMART SM00530 10 65 7.7E-15 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 Pfam PF01381 Helix-turn-helix 11 65 4.5E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 SUPERFAMILY SSF47413 2 70 2.68E-17 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 Gene3D G3DSA:2.60.120.10 93 183 3.7E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 SUPERFAMILY SSF51182 58 180 5.15E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3441 3e1f705d4edcc525088f65254ca3284e 183 Gene3D G3DSA:1.10.260.40 1 74 1.1E-19 T 31-10-2018 Y89_4284 8d747360fbc9aafe721718c73b011817 233 PIRSF PIRSF039137 1 233 3.7E-104 T 31-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Y89_4284 8d747360fbc9aafe721718c73b011817 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4284 8d747360fbc9aafe721718c73b011817 233 SUPERFAMILY SSF52540 2 231 2.02E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4284 8d747360fbc9aafe721718c73b011817 233 SMART SM00382 26 212 3.9E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4284 8d747360fbc9aafe721718c73b011817 233 Gene3D G3DSA:3.40.50.300 1 233 2.7E-66 T 31-10-2018 Y89_4284 8d747360fbc9aafe721718c73b011817 233 Pfam PF00005 ABC transporter 17 161 3.1E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.30.390.30 352 478 1.5E-49 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 5.5E-82 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 SUPERFAMILY SSF51905 1 344 5.1E-65 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.50.50.60 5 341 3.2E-130 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 Gene3D G3DSA:3.50.50.60 162 283 3.2E-130 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.5E-42 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 8.5E-42 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 8.5E-42 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 8.5E-42 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 8.5E-42 T 31-10-2018 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 SUPERFAMILY SSF55424 349 473 2.58E-42 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 PIRSF PIRSF000350 1 471 3.5E-90 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 472 2.7E-164 T 31-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 3.6E-39 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_3748 5c46978d0c2788de51dce739fcaacd8f 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 2.0E-71 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 Gene3D G3DSA:3.30.870.10 7 187 6.2E-34 T 31-10-2018 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 SMART SM00155 109 136 0.39 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 SMART SM00155 291 317 1.4 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 SUPERFAMILY SSF56024 4 177 3.36E-41 T 31-10-2018 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 Gene3D G3DSA:3.30.870.10 199 348 2.8E-24 T 31-10-2018 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 SUPERFAMILY SSF56024 207 364 3.36E-38 T 31-10-2018 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 Pfam PF13091 PLD-like domain 217 339 1.8E-25 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_4824 0c673c777b895a1638ffbdf2dadf7f4b 385 Pfam PF13091 PLD-like domain 30 169 3.4E-11 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 Pfam PF00005 ABC transporter 20 166 3.6E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 Gene3D G3DSA:3.40.50.300 2 241 3.6E-66 T 31-10-2018 Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 SUPERFAMILY SSF52540 4 235 1.93E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 SMART SM00382 28 213 6.3E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 3.5E-122 T 31-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4951 29be98c92fe47efa1a9a02e79eb01bb8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 6.3E-5 T 31-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 PIRSF PIRSF039085 1 241 2.9E-104 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 Gene3D G3DSA:3.40.50.300 1 241 3.5E-76 T 31-10-2018 Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 SUPERFAMILY SSF52540 1 235 4.51E-80 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 SMART SM00382 26 213 9.8E-19 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0830 b4ec23505b9cc4f8072e9ec44d03b50b 247 Pfam PF00005 ABC transporter 18 165 1.3E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2426 2a7cbc19f7b34de80cfb2c1ba3d3b21e 88 ProDom PD031420 YFEK EXPORTED PRECURSOR SIGNAL PERIPLASMIC ECS3291 XCC0326 1 67 2.0E-17 T 31-10-2018 IPR035242 Protein of unknown function DUF5329 Y89_2426 2a7cbc19f7b34de80cfb2c1ba3d3b21e 88 Pfam PF17263 Family of unknown function (DUF5329) 1 85 1.1E-32 T 31-10-2018 IPR035242 Protein of unknown function DUF5329 Y89_3196 c6d23ab86afb8c9320246f645c37b1ec 624 Gene3D G3DSA:1.10.760.10 330 400 2.7E-5 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3196 c6d23ab86afb8c9320246f645c37b1ec 624 SUPERFAMILY SSF46626 344 624 3.88E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SUPERFAMILY SSF47384 252 330 4.32E-22 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SUPERFAMILY SSF158472 192 239 3.14E-6 T 31-10-2018 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 492 6.4E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SUPERFAMILY SSF52172 516 633 2.42E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Gene3D G3DSA:1.10.287.130 251 330 6.7E-26 T 31-10-2018 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 35 101 2.4E-9 T 31-10-2018 IPR019247 Histidine kinase BarA, N-terminal Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SMART SM00387 378 494 7.5E-40 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 472 1.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 433 1.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 491 1.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 447 1.7E-17 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Pfam PF00512 His Kinase A (phospho-acceptor) domain 265 330 1.5E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Gene3D G3DSA:3.40.50.12740 515 647 5.3E-46 T 31-10-2018 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SMART SM00304 191 243 1.2E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Gene3D G3DSA:1.20.1480.50 155 249 5.7E-9 T 31-10-2018 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Gene3D G3DSA:3.30.565.10 331 497 1.2E-50 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SUPERFAMILY SSF55874 319 494 6.42E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 Pfam PF00072 Response regulator receiver domain 517 628 7.6E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SMART SM00448 515 628 3.2E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3724 6072b9683bacd7d2270771c8204d4ef2 651 SMART SM00388 265 330 1.3E-23 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 SUPERFAMILY SSF48024 8 114 1.83E-33 T 31-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 Pfam PF00772 DnaB-like helicase N terminal domain 8 105 7.9E-31 T 31-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 Gene3D G3DSA:3.40.50.300 159 440 8.3E-94 T 31-10-2018 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 Pfam PF03796 DnaB-like helicase C terminal domain 180 437 8.1E-97 T 31-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 SUPERFAMILY SSF52540 178 429 1.97E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 8 439 6.6E-151 T 31-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Y89_6330 7623a2fb7dc9c9e4f0c7dda437387d4e 448 Gene3D G3DSA:1.10.860.10 3 158 2.9E-47 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y89_4167 88470f28f0717e5fb97baa99107f2637 339 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 18 326 1.8E-120 T 31-10-2018 IPR020020 Luciferase-type oxidoreductase Y89_4167 88470f28f0717e5fb97baa99107f2637 339 SUPERFAMILY SSF51679 28 326 6.62E-56 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_4167 88470f28f0717e5fb97baa99107f2637 339 Gene3D G3DSA:3.20.20.30 8 329 7.9E-95 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_4167 88470f28f0717e5fb97baa99107f2637 339 Pfam PF00296 Luciferase-like monooxygenase 31 239 1.8E-37 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_4135 4a9cd7c392d2f5801831513d25a54647 292 SUPERFAMILY SSF51197 5 215 3.94E-27 T 31-10-2018 Y89_4135 4a9cd7c392d2f5801831513d25a54647 292 Gene3D G3DSA:2.60.120.620 2 209 1.4E-27 T 31-10-2018 Y89_4135 4a9cd7c392d2f5801831513d25a54647 292 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 7 197 9.6E-31 T 31-10-2018 IPR008775 Phytanoyl-CoA dioxygenase Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 307 7.2E-104 T 31-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 4 307 1.5E-104 T 31-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 SUPERFAMILY SSF53613 4 295 8.26E-64 T 31-10-2018 IPR029056 Ribokinase-like Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 Pfam PF00294 pfkB family carbohydrate kinase 17 289 4.0E-42 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 PIRSF PIRSF000535 1 310 4.2E-83 T 31-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Y89_1466 4bc8f7bfc9352d4069d7d6a38d344104 314 Gene3D G3DSA:3.40.1190.20 1 309 4.8E-96 T 31-10-2018 IPR029056 Ribokinase-like Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 3.6E-47 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 PIRSF PIRSF004505 1 155 7.8E-42 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 4.4E-61 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 Gene3D G3DSA:3.40.1280.10 1 155 9.5E-49 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 SUPERFAMILY SSF75217 1 154 1.1E-47 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_1020 d26fd1278364cd248ecc39fafeb99043 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 28.112 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Y89_4176 ef72366235b28e851f319bf53fd2aa3f 55 TIGRFAM TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein 11 52 1.8E-23 T 31-10-2018 IPR004448 Nitrate reductas, NapE, periplasmic Y89_4176 ef72366235b28e851f319bf53fd2aa3f 55 Pfam PF06796 Periplasmic nitrate reductase protein NapE 2 53 1.4E-24 T 31-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE Y89_1041 be05d0e113a0a0bb648619241225e282 340 SUPERFAMILY SSF52540 112 293 2.52E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1041 be05d0e113a0a0bb648619241225e282 340 Pfam PF02562 PhoH-like protein 113 316 7.1E-95 T 31-10-2018 IPR003714 PhoH-like protein GO:0005524 Y89_1041 be05d0e113a0a0bb648619241225e282 340 Gene3D G3DSA:3.40.50.300 109 316 2.2E-74 T 31-10-2018 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 Gene3D G3DSA:3.40.309.10 228 426 9.6E-157 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 Gene3D G3DSA:3.40.605.10 26 446 9.6E-157 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 224 231 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 SUPERFAMILY SSF53720 13 472 3.27E-119 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 PIRSF PIRSF036492 7 476 6.7E-168 T 31-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 Y89_0387 f0e130804e2cdfe0425f7586ff20ba94 476 Pfam PF00171 Aldehyde dehydrogenase family 33 445 8.5E-88 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 Gene3D G3DSA:3.40.50.720 7 265 9.4E-65 T 31-10-2018 Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 SUPERFAMILY SSF51735 5 229 1.16E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0061 T 31-10-2018 Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.9E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.9E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.9E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 PIRSF PIRSF000126 1 263 6.4E-73 T 31-10-2018 Y89_5501 1e85a1589de0b065fcb8a9e33a62ebe0 265 Pfam PF00106 short chain dehydrogenase 9 197 2.5E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 27 38 2.6E-6 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 51 2.6E-6 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 61 81 2.6E-6 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 SMART SM00422 26 94 1.5E-11 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 SUPERFAMILY SSF46955 26 97 3.19E-15 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_1687 c59c2da0c5c6761ae7b1b0d3c049fabd 270 Pfam PF13411 MerR HTH family regulatory protein 26 93 1.1E-17 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1152 2c26f2cfc5d8690160053118267388eb 513 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 435 5.6E-30 T 31-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Y89_1152 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:3.30.70.20 1 298 9.0E-104 T 31-10-2018 Y89_1152 2c26f2cfc5d8690160053118267388eb 513 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 490 0.0 T 31-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Y89_1152 2c26f2cfc5d8690160053118267388eb 513 Pfam PF13247 4Fe-4S dicluster domain 175 271 8.0E-38 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_1152 2c26f2cfc5d8690160053118267388eb 513 Gene3D G3DSA:1.10.3650.10 358 434 1.7E-30 T 31-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Y89_1152 2c26f2cfc5d8690160053118267388eb 513 SUPERFAMILY SSF54862 1 487 8.37E-178 T 31-10-2018 Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 6.6E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 2.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 192 6.7E-5 T 31-10-2018 Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 Gene3D G3DSA:3.40.50.720 1 255 3.1E-78 T 31-10-2018 Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 Pfam PF00106 short chain dehydrogenase 7 202 3.0E-49 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2636 4bfa76989016c7e4e5a10296c207f737 255 SUPERFAMILY SSF51735 3 250 1.15E-65 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 256 1.0E-50 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 Pfam PF02567 Phenazine biosynthesis-like protein 10 256 2.6E-50 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 SUPERFAMILY SSF54506 4 276 2.3E-67 T 31-10-2018 Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 Gene3D G3DSA:3.10.310.10 126 268 3.7E-75 T 31-10-2018 Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 PIRSF PIRSF016184 3 278 8.6E-61 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3983 e47b1b702cc8c8eaf6d45f795a221f72 278 Gene3D G3DSA:3.10.310.10 9 125 3.7E-75 T 31-10-2018 Y89_1785 0e3a716a1fc24f6ec0bd6f49431726fd 374 SUPERFAMILY SSF55729 174 344 2.28E-35 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1785 0e3a716a1fc24f6ec0bd6f49431726fd 374 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 9 373 5.5E-148 T 31-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition Y89_2724 5a922cd91d5fb26e16e8ede0fecd9080 278 Gene3D G3DSA:3.40.30.10 132 265 3.2E-32 T 31-10-2018 Y89_2724 5a922cd91d5fb26e16e8ede0fecd9080 278 SUPERFAMILY SSF52833 106 264 1.06E-32 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2724 5a922cd91d5fb26e16e8ede0fecd9080 278 Pfam PF00578 AhpC/TSA family 133 244 6.3E-15 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_2724 5a922cd91d5fb26e16e8ede0fecd9080 278 ProSitePatterns PS00194 Thioredoxin family active site. 160 178 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_3398 bde47929ff6e1d079aa7f1861bf7bd8a 1281 Pfam PF02514 CobN/Magnesium Chelatase 124 1177 6.2E-289 T 31-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Y89_0177 be95ae230cc5f23952efe472f3255553 278 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 64 278 6.1E-18 T 31-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 Y89_0177 be95ae230cc5f23952efe472f3255553 278 SUPERFAMILY SSF111364 39 278 5.49E-76 T 31-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 Y89_0177 be95ae230cc5f23952efe472f3255553 278 Gene3D G3DSA:2.40.230.20 36 278 1.7E-27 T 31-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 Y89_3154 bc4432473e49c6f9cd349f1529a8dd50 211 Pfam PF02195 ParB-like nuclease domain 53 149 1.4E-12 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_3154 bc4432473e49c6f9cd349f1529a8dd50 211 SUPERFAMILY SSF110849 50 183 1.92E-18 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_3154 bc4432473e49c6f9cd349f1529a8dd50 211 SMART SM00470 52 150 2.9E-6 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_1199 42d5251456758c9b4bbca916ea8cca0d 355 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 353 1.8E-130 T 31-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 Y89_1199 42d5251456758c9b4bbca916ea8cca0d 355 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 353 4.1E-67 T 31-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.40.50.980 47 373 4.6E-116 T 31-10-2018 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Pfam PF00501 AMP-binding enzyme 31 461 1.1E-106 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:2.30.38.10 374 454 4.6E-116 T 31-10-2018 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 545 2.9E-17 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.30.300.310 457 560 1.1E-29 T 31-10-2018 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 SUPERFAMILY SSF56801 18 557 3.01E-149 T 31-10-2018 Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_1713 385cef239568202fe5ab91ed38c3b06c 562 Gene3D G3DSA:3.40.50.980 52 228 4.6E-116 T 31-10-2018 Y89_5815 c98864bdd746071273868e162e6cfb69 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 207 3.7E-66 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_5815 c98864bdd746071273868e162e6cfb69 212 Gene3D G3DSA:3.40.50.880 1 210 2.5E-72 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5815 c98864bdd746071273868e162e6cfb69 212 PIRSF PIRSF000495 2 210 5.9E-67 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_5815 c98864bdd746071273868e162e6cfb69 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 208 34.552 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Y89_5815 c98864bdd746071273868e162e6cfb69 212 Pfam PF00117 Glutamine amidotransferase class-I 6 206 1.1E-18 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_5815 c98864bdd746071273868e162e6cfb69 212 SUPERFAMILY SSF52317 2 208 3.01E-55 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 Gene3D G3DSA:3.40.50.300 6 239 4.7E-60 T 31-10-2018 Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 Gene3D G3DSA:3.40.50.300 249 500 6.4E-29 T 31-10-2018 Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 SMART SM00382 36 220 2.3E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 SUPERFAMILY SSF52540 10 226 4.35E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 Pfam PF00005 ABC transporter 280 436 5.6E-6 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 Pfam PF00005 ABC transporter 28 173 2.5E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0149 c992a7c71cb23631855b10451ee97c9f 523 SUPERFAMILY SSF52540 259 487 1.08E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2317 a61d3fe7c8b9c5a605d2b5bdef951ca1 107 Pfam PF13560 Helix-turn-helix domain 24 79 1.9E-12 T 31-10-2018 Y89_2317 a61d3fe7c8b9c5a605d2b5bdef951ca1 107 SMART SM00530 28 83 9.5E-12 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_2317 a61d3fe7c8b9c5a605d2b5bdef951ca1 107 SUPERFAMILY SSF47413 22 88 2.25E-17 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2317 a61d3fe7c8b9c5a605d2b5bdef951ca1 107 Gene3D G3DSA:1.10.260.40 20 105 7.8E-19 T 31-10-2018 Y89_5315 a2e21dfa245a3b04ed227be50bd583df 90 Gene3D G3DSA:1.10.150.20 2 86 2.5E-19 T 31-10-2018 Y89_5315 a2e21dfa245a3b04ed227be50bd583df 90 Pfam PF04994 TfoX C-terminal domain 1 80 1.0E-27 T 31-10-2018 IPR007077 TfoX, C-terminal Y89_6008 7fed9c8527a211dda97bc415644b0687 97 Gene3D G3DSA:3.30.70.100 1 97 2.6E-31 T 31-10-2018 Y89_6008 7fed9c8527a211dda97bc415644b0687 97 SUPERFAMILY SSF54909 1 96 9.49E-27 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_6008 7fed9c8527a211dda97bc415644b0687 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 77 1.4E-18 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.2090.10 705 795 4.7E-284 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:1.20.1640.10 510 1011 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 609 623 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 3.4E-60 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82714 710 789 6.8E-16 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82693 141 328 1.99E-23 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82866 294 494 8.89E-45 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.2090.10 183 273 4.7E-284 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.70.1430 44 803 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:1.20.1640.10 14 509 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82693 45 129 1.1E-19 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.70.1320 139 330 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Pfam PF00873 AcrB/AcrD/AcrF family 9 1014 6.6E-296 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82693 555 652 1.78E-13 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.70.1430 557 653 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 Gene3D G3DSA:3.30.70.1440 654 853 4.7E-284 T 31-10-2018 Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82714 187 267 2.62E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_3903 d82cee0b97d4ef1d3c294bc01ab4cea0 1036 SUPERFAMILY SSF82866 794 1018 2.09E-44 T 31-10-2018 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 150 5.1E-41 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 Gene3D G3DSA:2.60.40.10 151 248 2.5E-33 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 PRINTS PR00969 Pili chaperone signature 30 39 3.2E-29 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 PRINTS PR00969 Pili chaperone signature 79 100 3.2E-29 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 PRINTS PR00969 Pili chaperone signature 172 187 3.2E-29 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 PRINTS PR00969 Pili chaperone signature 131 146 3.2E-29 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 PRINTS PR00969 Pili chaperone signature 107 124 3.2E-29 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 177 240 3.0E-21 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 SUPERFAMILY SSF49584 151 241 1.07E-17 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 SUPERFAMILY SSF49354 25 149 2.24E-39 T 31-10-2018 IPR008962 PapD-like superfamily Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 Gene3D G3DSA:2.60.40.10 31 150 2.9E-45 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0939 9d778ee5aea73f7149a7df39baf54dab 248 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 106 123 - T 31-10-2018 IPR018046 Pili assembly chaperone, conserved site Y89_5175 afffc16d668532bfbdd991c41758b044 103 SUPERFAMILY SSF141091 1 102 9.03E-39 T 31-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5175 afffc16d668532bfbdd991c41758b044 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 31-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5175 afffc16d668532bfbdd991c41758b044 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 7.6E-43 T 31-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5175 afffc16d668532bfbdd991c41758b044 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.193 T 31-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5175 afffc16d668532bfbdd991c41758b044 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 4.0E-40 T 31-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Pfam PF01381 Helix-turn-helix 7 60 9.7E-11 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Gene3D G3DSA:1.10.260.40 1 69 1.9E-20 T 31-10-2018 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Gene3D G3DSA:2.10.109.10 127 234 1.6E-7 T 31-10-2018 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SMART SM00530 6 60 3.3E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SUPERFAMILY SSF51306 101 233 6.54E-22 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 SUPERFAMILY SSF47413 3 61 2.49E-13 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_4453 d341dc888990dd6c8e58fb6d7fdfbe5f 237 Pfam PF00717 Peptidase S24-like 148 214 1.4E-12 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y89_2553 9b174ecb589acc70dfbac02453511bbe 535 SUPERFAMILY SSF51905 8 530 5.6E-41 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2553 9b174ecb589acc70dfbac02453511bbe 535 Pfam PF01593 Flavin containing amine oxidoreductase 24 304 3.2E-14 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y89_2553 9b174ecb589acc70dfbac02453511bbe 535 Gene3D G3DSA:3.50.50.60 2 122 2.2E-10 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2553 9b174ecb589acc70dfbac02453511bbe 535 Gene3D G3DSA:3.50.50.60 231 334 6.2E-17 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 ProSitePatterns PS00455 Putative AMP-binding domain signature. 221 232 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 SUPERFAMILY SSF56801 16 570 5.89E-132 T 31-10-2018 Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 561 1.8E-16 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 Gene3D G3DSA:3.30.300.30 471 574 7.1E-26 T 31-10-2018 Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 Gene3D G3DSA:3.40.50.12780 22 469 1.8E-101 T 31-10-2018 Y89_1164 2f6ed7e0b66b59944c2153beaebccc8b 632 Pfam PF00501 AMP-binding enzyme 34 476 3.9E-87 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_3019 2e828556eedeafab292e0402d07c9382 395 SUPERFAMILY SSF53756 10 389 2.51E-34 T 31-10-2018 Y89_3019 2e828556eedeafab292e0402d07c9382 395 Pfam PF00534 Glycosyl transferases group 1 192 365 1.4E-14 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_3019 2e828556eedeafab292e0402d07c9382 395 Gene3D G3DSA:3.40.50.2000 57 384 8.6E-26 T 31-10-2018 Y89_3019 2e828556eedeafab292e0402d07c9382 395 Gene3D G3DSA:3.40.50.2000 176 369 8.6E-26 T 31-10-2018 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 Gene3D G3DSA:3.40.640.10 41 303 1.1E-160 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 PIRSF PIRSF038800 1 407 5.4E-141 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 Pfam PF00266 Aminotransferase class-V 78 363 4.2E-16 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_3194 528f69c92be3f63d52a27ba130444b62 416 Gene3D G3DSA:3.90.1150.10 10 399 1.1E-160 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 TIGRFAM TIGR01814 kynureninase: kynureninase 8 399 2.3E-103 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 Hamap MF_01970 Kynureninase [kynU]. 1 399 35.183 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 Y89_3194 528f69c92be3f63d52a27ba130444b62 416 SUPERFAMILY SSF53383 3 400 2.45E-92 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1807 eb943573af4cf04775682d8975416257 186 Pfam PF00881 Nitroreductase family 9 163 1.3E-23 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y89_1807 eb943573af4cf04775682d8975416257 186 Gene3D G3DSA:3.40.109.10 1 178 1.3E-38 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1807 eb943573af4cf04775682d8975416257 186 SUPERFAMILY SSF55469 1 182 1.7E-38 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_1807 eb943573af4cf04775682d8975416257 186 PIRSF PIRSF000232 1 186 2.0E-66 T 31-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 1.7E-39 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.6E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.6E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.6E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 6.0E-17 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.9E-38 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 SUPERFAMILY SSF110324 2 80 2.13E-33 T 31-10-2018 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 31-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 Gene3D G3DSA:2.40.50.100 21 85 2.6E-29 T 31-10-2018 Y89_5174 22408758d4a7dc69c3799fc8677dd1fa 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.179 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2295 86c16257453cb7f1c98f45481c39796e 95 Pfam PF12021 Protein of unknown function (DUF3509) 4 87 1.8E-32 T 31-10-2018 IPR021898 Protein of unknown function DUF3509 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 Gene3D G3DSA:3.40.50.720 174 312 1.8E-149 T 31-10-2018 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 SUPERFAMILY SSF50129 318 369 1.05E-11 T 31-10-2018 IPR011032 GroES-like superfamily Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 SMART SM00829 10 367 1.2E-4 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 SUPERFAMILY SSF51735 161 333 5.16E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 Gene3D G3DSA:3.90.180.10 6 364 1.8E-149 T 31-10-2018 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.9E-219 T 31-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 Pfam PF00107 Zinc-binding dehydrogenase 197 330 5.9E-23 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 SUPERFAMILY SSF50129 1 185 1.28E-70 T 31-10-2018 IPR011032 GroES-like superfamily Y89_5991 729f1249df70fe18f3f16418b49d49d1 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 5.1E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 Pfam PF01895 PhoU domain 338 419 5.5E-7 T 31-10-2018 IPR026022 PhoU domain Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 Pfam PF02690 Na+/Pi-cotransporter 16 150 2.1E-33 T 31-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 Pfam PF02690 Na+/Pi-cotransporter 142 238 8.2E-11 T 31-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 Gene3D G3DSA:1.20.58.220 331 421 7.9E-8 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 SUPERFAMILY SSF109755 328 527 2.62E-25 T 31-10-2018 Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 6 305 4.1E-63 T 31-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Y89_5491 b9f316576141f1a7440a00f31fb5f3a0 555 Gene3D G3DSA:1.20.58.220 442 531 5.7E-6 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_3077 7548f7bbbe123beadc910c35aab761c5 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 114 4.0E-13 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_3077 7548f7bbbe123beadc910c35aab761c5 225 SUPERFAMILY SSF161098 22 214 2.22E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3077 7548f7bbbe123beadc910c35aab761c5 225 Gene3D G3DSA:1.10.3720.10 17 225 1.1E-44 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3077 7548f7bbbe123beadc910c35aab761c5 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 224 2.3E-22 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3096 2b08f7d034c3202c863a46f750fe292a 202 Pfam PF06930 Protein of unknown function (DUF1282) 8 177 2.5E-20 T 31-10-2018 IPR009698 Protein of unknown function DUF1282 Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 220 1.1E-48 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 SMART SM00796 5 226 1.7E-73 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 Gene3D G3DSA:3.30.1360.40 1 83 1.1E-11 T 31-10-2018 Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 Gene3D G3DSA:2.40.100.10 85 288 4.4E-52 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 SUPERFAMILY SSF50891 92 248 3.22E-26 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_0517 f9960b748d38fc9665f74d2415fdc187 292 SUPERFAMILY SSF160467 6 96 2.09E-14 T 31-10-2018 Y89_6253 8089063962e7fb7567d6413a9e94e977 292 Gene3D G3DSA:3.40.50.1820 13 290 7.5E-55 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6253 8089063962e7fb7567d6413a9e94e977 292 SUPERFAMILY SSF53474 12 288 5.4E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6253 8089063962e7fb7567d6413a9e94e977 292 Pfam PF12697 Alpha/beta hydrolase family 31 282 1.9E-14 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0345 16bce53dd3f8d6fac0f5b67c62969b5b 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 297 9.4E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0345 16bce53dd3f8d6fac0f5b67c62969b5b 309 SUPERFAMILY SSF161098 19 300 1.12E-54 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0345 16bce53dd3f8d6fac0f5b67c62969b5b 309 Gene3D G3DSA:1.10.3720.10 21 304 4.9E-52 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1014 ecf5905a7046e5f423e7d5deb6e03958 239 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 21 205 9.6E-36 T 31-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y89_1014 ecf5905a7046e5f423e7d5deb6e03958 239 SUPERFAMILY SSF50486 15 220 2.2E-53 T 31-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Y89_1014 ecf5905a7046e5f423e7d5deb6e03958 239 Gene3D G3DSA:3.10.300.10 12 215 4.9E-38 T 31-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y89_1014 ecf5905a7046e5f423e7d5deb6e03958 239 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 19 213 25.791 T 31-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y89_0258 073a8e86cc923fe9c5a68cb55c21b7b3 213 Pfam PF05076 Suppressor of fused protein (SUFU) 47 196 1.6E-22 T 31-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 Y89_0258 073a8e86cc923fe9c5a68cb55c21b7b3 213 SUPERFAMILY SSF103359 46 196 5.23E-6 T 31-10-2018 IPR037181 Suppressor of fused, N-terminal Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 Y89_3612 a6f6b1b34e247fb3cadc05c620b01bbe 143 Gene3D G3DSA:1.10.10.1000 38 127 4.4E-10 T 31-10-2018 Y89_3612 a6f6b1b34e247fb3cadc05c620b01bbe 143 Pfam PF09025 YopR, type III needle-polymerisation regulator 54 142 1.3E-21 T 31-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 Y89_3612 a6f6b1b34e247fb3cadc05c620b01bbe 143 TIGRFAM TIGR02509 type_III_yopR: type III secretion effector, YopR family 16 141 2.5E-47 T 31-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 Y89_3612 a6f6b1b34e247fb3cadc05c620b01bbe 143 SUPERFAMILY SSF140591 24 123 8.63E-28 T 31-10-2018 Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 Gene3D G3DSA:3.40.50.300 1 298 1.9E-42 T 31-10-2018 Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1100 1169 2.4E-12 T 31-10-2018 Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 SUPERFAMILY SSF52540 892 1203 1.44E-17 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 SUPERFAMILY SSF52540 1 288 1.74E-26 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 Gene3D G3DSA:3.40.50.300 977 1211 1.0E-22 T 31-10-2018 Y89_4766 24f0a9e046fb9866d196232b3e0ec79f 1211 Pfam PF13476 AAA domain 6 329 1.5E-24 T 31-10-2018 IPR038729 Rad50/SbcC-type AAA domain Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 Gene3D G3DSA:1.10.8.540 513 600 7.0E-23 T 31-10-2018 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 Pfam PF00771 FHIPEP family 31 696 2.2E-267 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 704 4.3E-261 T 31-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 Gene3D G3DSA:1.10.490.80 604 704 7.8E-12 T 31-10-2018 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 1.5E-55 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 31-10-2018 IPR025505 FHIPEP conserved site Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 PIRSF PIRSF005419 7 707 9.3E-249 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3887 568e3e52fe935e2cea711c9c8910f812 707 Gene3D G3DSA:3.40.30.60 370 512 3.8E-53 T 31-10-2018 Y89_4336 9e0913e231773dc353b42173b0685f73 135 Gene3D G3DSA:3.10.129.10 7 135 2.4E-35 T 31-10-2018 Y89_4336 9e0913e231773dc353b42173b0685f73 135 Pfam PF03061 Thioesterase superfamily 51 121 1.1E-12 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_4336 9e0913e231773dc353b42173b0685f73 135 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 19 126 2.1E-15 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_4336 9e0913e231773dc353b42173b0685f73 135 SUPERFAMILY SSF54637 11 130 2.24E-27 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1560 fc8884c9c2517fa6ac7db9bbe4d0a233 197 Gene3D G3DSA:3.40.50.360 2 187 9.4E-44 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1560 fc8884c9c2517fa6ac7db9bbe4d0a233 197 Pfam PF03358 NADPH-dependent FMN reductase 1 143 3.7E-31 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y89_1560 fc8884c9c2517fa6ac7db9bbe4d0a233 197 SUPERFAMILY SSF52218 1 168 3.26E-29 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1560 fc8884c9c2517fa6ac7db9bbe4d0a233 197 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 3 171 2.4E-69 T 31-10-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 Y89_4904 68fa3879119b1156c358e505e8e16484 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 4.4E-5 T 31-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4904 68fa3879119b1156c358e505e8e16484 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 31-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4904 68fa3879119b1156c358e505e8e16484 360 Pfam PF00953 Glycosyl transferase family 4 99 284 9.7E-37 T 31-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Y89_4904 68fa3879119b1156c358e505e8e16484 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 31-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4904 68fa3879119b1156c358e505e8e16484 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 7.9E-141 T 31-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4904 68fa3879119b1156c358e505e8e16484 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.643 T 31-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_1627 740062ae963038aed0a7a06e2cd0f728 264 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 24 263 1.5E-92 T 31-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 Y89_1627 740062ae963038aed0a7a06e2cd0f728 264 SUPERFAMILY SSF161098 67 258 1.13E-34 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1627 740062ae963038aed0a7a06e2cd0f728 264 Gene3D G3DSA:1.10.3720.10 65 262 5.5E-32 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1627 740062ae963038aed0a7a06e2cd0f728 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 263 7.1E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2975 99221a8d80cfea7e174df13ea199fde7 156 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 7.3E-30 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Y89_2975 99221a8d80cfea7e174df13ea199fde7 156 Gene3D G3DSA:3.40.50.2300 1 135 6.8E-35 T 31-10-2018 Y89_2975 99221a8d80cfea7e174df13ea199fde7 156 SUPERFAMILY SSF52788 1 136 1.44E-36 T 31-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Y89_2975 99221a8d80cfea7e174df13ea199fde7 156 SMART SM00226 1 136 2.2E-54 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 SUPERFAMILY SSF46785 491 616 1.12E-43 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 494 616 8.7E-50 T 31-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 26 243 3.8E-87 T 31-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 Pfam PF07514 Putative helicase 27 340 1.9E-126 T 31-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 Gene3D G3DSA:2.40.10.200 511 612 6.5E-26 T 31-10-2018 Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 Gene3D G3DSA:1.10.10.10 495 565 6.5E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4684 893767bd85f63699a96d9b77c5a99e39 620 Gene3D G3DSA:1.10.3210.40 29 249 1.7E-39 T 31-10-2018 Y89_0912 667e21bdb7e59cc5749aab1eb1ef6495 397 SUPERFAMILY SSF56601 32 387 1.68E-95 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_0912 667e21bdb7e59cc5749aab1eb1ef6495 397 Pfam PF00144 Beta-lactamase 38 385 2.1E-80 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_0912 667e21bdb7e59cc5749aab1eb1ef6495 397 Gene3D G3DSA:3.40.710.10 32 389 4.3E-121 T 31-10-2018 Y89_0912 667e21bdb7e59cc5749aab1eb1ef6495 397 ProSitePatterns PS00336 Beta-lactamase class-C active site. 86 93 - T 31-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF55874 251 394 1.31E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00091 75 138 3.2E-7 T 31-10-2018 IPR000014 PAS domain Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:1.10.287.130 166 244 2.6E-15 T 31-10-2018 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00388 181 247 3.0E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF13188 PAS domain 76 130 3.4E-7 T 31-10-2018 IPR000014 PAS domain Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF55785 75 153 4.01E-10 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SMART SM00387 287 393 3.8E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF00512 His Kinase A (phospho-acceptor) domain 181 245 4.3E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 371 1.5E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 1.5E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.5E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 390 1.5E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:3.30.450.20 60 164 3.8E-6 T 31-10-2018 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 SUPERFAMILY SSF47384 175 245 2.75E-12 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Gene3D G3DSA:3.30.565.10 255 394 2.1E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4256 e40ec59b431a6ec9d5f254023e3a918e 402 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 391 6.0E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Gene3D G3DSA:1.10.8.60 8 240 1.2E-103 T 31-10-2018 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 359 2.3E-33 T 31-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 570 684 1.2E-15 T 31-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Pfam PF13177 DNA polymerase III, delta subunit 20 178 2.5E-44 T 31-10-2018 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.9E-5 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.9E-5 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Gene3D G3DSA:1.20.272.10 242 361 3.5E-43 T 31-10-2018 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 7.7E-131 T 31-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Gene3D G3DSA:3.40.50.300 13 177 1.2E-103 T 31-10-2018 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 SUPERFAMILY SSF52540 29 222 2.54E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 SMART SM00382 37 179 7.6E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 SUPERFAMILY SSF48019 243 362 1.45E-33 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Y89_3806 931634b4db8c5b29dc8e59657b63d3f2 695 Gene3D G3DSA:3.30.300.150 564 673 6.6E-14 T 31-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_4180 eb0ae3290d912ca15029afd4910ffcef 163 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 40 146 3.4E-46 T 31-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB Y89_4180 eb0ae3290d912ca15029afd4910ffcef 163 PIRSF PIRSF006105 3 162 3.3E-54 T 31-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB Y89_4180 eb0ae3290d912ca15029afd4910ffcef 163 SUPERFAMILY SSF48695 44 153 6.55E-43 T 31-10-2018 IPR036280 Multiheme cytochrome superfamily Y89_4180 eb0ae3290d912ca15029afd4910ffcef 163 Gene3D G3DSA:1.10.1130.10 66 133 6.1E-28 T 31-10-2018 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.40.605.10 565 1039 1.2E-155 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.40.309.10 816 1007 1.2E-155 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF01619 Proline dehydrogenase 197 496 5.8E-95 T 31-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 533 1037 5.5E-212 T 31-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF00171 Aldehyde dehydrogenase family 583 1037 2.2E-115 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 841 852 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Gene3D G3DSA:3.20.20.220 147 532 3.2E-136 T 31-10-2018 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF51730 190 540 4.32E-114 T 31-10-2018 IPR029041 FAD-linked oxidoreductase-like Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF81935 19 189 1.83E-62 T 31-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 74 187 2.2E-45 T 31-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 SUPERFAMILY SSF53720 553 1042 1.2E-127 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4576 768bc4cd4e37a92cb4961ca1604a9e55 1060 PIRSF PIRSF000197 4 1057 0.0 T 31-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 SUPERFAMILY SSF46689 1 65 4.99E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 Gene3D G3DSA:1.10.357.10 1 212 3.7E-96 T 31-10-2018 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.3E-17 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 83 198 4.1E-13 T 31-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 8.8E-12 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 8.8E-12 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1452 4b9e28c898f6dd90495b663522316f3e 212 SUPERFAMILY SSF48498 83 202 7.56E-12 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3785 ccf0fd169d0aa1460ba920d4023ea1d5 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 9 45 4.3E-9 T 31-10-2018 IPR008621 Cbb3-type cytochrome oxidase component Y89_1231 b06bd4fdd0f7cd188b2b9187a5f81780 316 Gene3D G3DSA:3.20.20.100 1 316 2.8E-102 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_1231 b06bd4fdd0f7cd188b2b9187a5f81780 316 SUPERFAMILY SSF51430 1 313 2.62E-95 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_1231 b06bd4fdd0f7cd188b2b9187a5f81780 316 Pfam PF00248 Aldo/keto reductase family 16 313 4.4E-69 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_5212 9f24c46a0f44d243223721a91179c484 334 Gene3D G3DSA:3.40.50.300 10 211 7.0E-67 T 31-10-2018 Y89_5212 9f24c46a0f44d243223721a91179c484 334 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 330 1.3E-20 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_5212 9f24c46a0f44d243223721a91179c484 334 SUPERFAMILY SSF90002 237 329 1.57E-25 T 31-10-2018 Y89_5212 9f24c46a0f44d243223721a91179c484 334 SMART SM00833 237 331 7.4E-16 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_5212 9f24c46a0f44d243223721a91179c484 334 Gene3D G3DSA:3.30.1220.10 222 331 8.9E-34 T 31-10-2018 IPR036627 CobW-like, C-terminal domain superfamily Y89_5212 9f24c46a0f44d243223721a91179c484 334 SUPERFAMILY SSF52540 11 210 1.99E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5212 9f24c46a0f44d243223721a91179c484 334 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 13 191 4.4E-52 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 Pfam PF13365 Trypsin-like peptidase domain 107 241 1.9E-30 T 31-10-2018 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 Gene3D G3DSA:2.40.10.120 53 274 3.8E-77 T 31-10-2018 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 137 157 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 320 332 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 234 251 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 116 128 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 PRINTS PR00834 HtrA/DegQ protease family signature 212 229 5.6E-54 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 SUPERFAMILY SSF50156 238 363 1.71E-22 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 SUPERFAMILY SSF50494 51 272 6.4E-63 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 Gene3D G3DSA:2.30.42.10 275 374 1.6E-24 T 31-10-2018 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 Pfam PF13180 PDZ domain 280 370 2.4E-15 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_4935 d66c1fe1bab2f94c34632873d8fcabab 389 SMART SM00228 280 362 1.3E-12 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 9.2E-56 T 31-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 31-10-2018 IPR018102 Ribosomal S11, conserved site Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 Gene3D G3DSA:3.30.420.80 1 129 5.1E-56 T 31-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 PIRSF PIRSF002131 1 129 1.7E-53 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 Pfam PF00411 Ribosomal protein S11 19 128 2.2E-51 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.637 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Y89_0782 6612f1505ad78f0c94ed2173877365bd 129 SUPERFAMILY SSF53137 15 129 2.09E-47 T 31-10-2018 Y89_6322 dd8dcac6370a43a48e9752758464a060 433 Gene3D G3DSA:1.10.150.130 1 109 1.2E-11 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_6322 dd8dcac6370a43a48e9752758464a060 433 Pfam PF00589 Phage integrase family 144 295 7.6E-26 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_6322 dd8dcac6370a43a48e9752758464a060 433 SUPERFAMILY SSF56349 5 305 5.59E-39 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_6322 dd8dcac6370a43a48e9752758464a060 433 Gene3D G3DSA:1.10.443.10 118 322 8.2E-32 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_6322 dd8dcac6370a43a48e9752758464a060 433 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 81 4.4E-5 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_5147 dd8dcac6370a43a48e9752758464a060 433 Gene3D G3DSA:1.10.150.130 1 109 1.2E-11 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5147 dd8dcac6370a43a48e9752758464a060 433 Pfam PF00589 Phage integrase family 144 295 7.6E-26 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_5147 dd8dcac6370a43a48e9752758464a060 433 SUPERFAMILY SSF56349 5 305 5.59E-39 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_5147 dd8dcac6370a43a48e9752758464a060 433 Gene3D G3DSA:1.10.443.10 118 322 8.2E-32 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_5147 dd8dcac6370a43a48e9752758464a060 433 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 81 4.4E-5 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_4201 e017a939591be27844be7c13612b97c3 87 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 1 85 9.6E-37 T 31-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 Y89_4201 e017a939591be27844be7c13612b97c3 87 Gene3D G3DSA:1.10.1200.20 1 87 2.2E-38 T 31-10-2018 IPR035900 Colicin E immunity protein superfamily Y89_4201 e017a939591be27844be7c13612b97c3 87 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 8 87 4.0E-41 T 31-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 Y89_4201 e017a939591be27844be7c13612b97c3 87 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 41 57 4.2E-28 T 31-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 Y89_4201 e017a939591be27844be7c13612b97c3 87 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 64 85 4.2E-28 T 31-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 Y89_4201 e017a939591be27844be7c13612b97c3 87 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 2 20 4.2E-28 T 31-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 Y89_4201 e017a939591be27844be7c13612b97c3 87 SUPERFAMILY SSF47345 1 86 1.96E-32 T 31-10-2018 IPR035900 Colicin E immunity protein superfamily Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 Gene3D G3DSA:3.90.180.10 22 334 3.0E-107 T 31-10-2018 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 SMART SM00829 16 334 7.3E-12 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 SUPERFAMILY SSF50129 9 137 1.48E-33 T 31-10-2018 IPR011032 GroES-like superfamily Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 150 171 - T 31-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 89 3.0E-6 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 2.5E-177 T 31-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 Gene3D G3DSA:3.40.50.720 128 273 3.0E-107 T 31-10-2018 Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 SUPERFAMILY SSF51735 117 287 1.12E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1459 191d53dad0755775ed02a51c760d4d4c 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 2.9E-24 T 31-10-2018 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 SUPERFAMILY SSF82861 25 107 1.57E-16 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 Pfam PF00924 Mechanosensitive ion channel 67 262 1.5E-49 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 SUPERFAMILY SSF82689 177 272 2.35E-26 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 138 172 - T 31-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 SUPERFAMILY SSF50182 109 174 5.89E-18 T 31-10-2018 IPR010920 LSM domain superfamily Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 Gene3D G3DSA:3.30.70.100 175 266 1.5E-22 T 31-10-2018 Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 Pfam PF05552 Conserved TM helix 15 59 7.2E-8 T 31-10-2018 IPR008910 Conserved TM helix Y89_4883 26010b9c83e8c4b6dec104bc7f2c8c71 278 Gene3D G3DSA:2.30.30.60 124 173 1.2E-21 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_4052 39eb78c5e7bede4df3dde134ab513b25 91 Pfam PF02583 Metal-sensitive transcriptional repressor 8 86 4.7E-22 T 31-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Y89_4052 39eb78c5e7bede4df3dde134ab513b25 91 Gene3D G3DSA:1.20.58.1000 1 91 9.1E-30 T 31-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 SUPERFAMILY SSF53323 722 982 1.44E-30 T 31-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 Gene3D G3DSA:3.40.920.10 720 943 2.1E-20 T 31-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 731 931 8.3E-27 T 31-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 SUPERFAMILY SSF52518 438 622 6.48E-14 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 458 543 1.1E-6 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 SUPERFAMILY SSF52518 18 227 1.53E-17 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 SUPERFAMILY SSF52922 268 397 5.49E-8 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_2524 167a3ad4fbedb66d8a33fda796e2905f 1185 Gene3D G3DSA:3.40.50.970 6 220 5.8E-24 T 31-10-2018 Y89_1939 5226b364a9f5a8ed96a3229a0af816fa 365 Pfam PF15899 BNR-Asp box repeat 265 278 0.06 T 31-10-2018 IPR002860 BNR repeat Y89_1939 5226b364a9f5a8ed96a3229a0af816fa 365 SUPERFAMILY SSF110296 78 323 4.18E-50 T 31-10-2018 Y89_1939 5226b364a9f5a8ed96a3229a0af816fa 365 Gene3D G3DSA:2.130.10.10 45 288 5.3E-26 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_1939 5226b364a9f5a8ed96a3229a0af816fa 365 Pfam PF14870 Photosynthesis system II assembly factor YCF48 151 237 5.6E-16 T 31-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.6E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 Gene3D G3DSA:1.10.10.10 1 87 4.2E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 SUPERFAMILY SSF46785 2 109 1.82E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 SUPERFAMILY SSF53850 86 285 1.15E-40 T 31-10-2018 Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 Gene3D G3DSA:3.40.190.290 89 283 1.8E-35 T 31-10-2018 Y89_3936 ff3087f577a7ea4ba9c2f5b64620e7f4 290 Pfam PF03466 LysR substrate binding domain 85 283 3.3E-44 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 31-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 SMART SM00938 4 105 4.6E-66 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-45 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 31-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 23 41 1.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 83 103 1.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 2 17 1.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 PRINTS PR00340 P-II protein signature 52 75 1.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 SUPERFAMILY SSF54913 1 112 6.35E-45 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 PIRSF PIRSF039144 1 112 4.8E-55 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_5977 83db47bc8df9010c24883e7f9c6e6061 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.9E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 Pfam PF00072 Response regulator receiver domain 4 117 4.4E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 SUPERFAMILY SSF52172 1 131 4.7E-28 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3346 3280f0bb9f328d91ed4859b283861585 221 SUPERFAMILY SSF46894 146 211 8.84E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 SMART SM00448 2 116 2.3E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 Gene3D G3DSA:3.40.50.12740 3 213 1.4E-52 T 31-10-2018 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 SMART SM00421 153 210 1.8E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.4E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.4E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.4E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3346 3280f0bb9f328d91ed4859b283861585 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 8.2E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 4.3E-259 T 31-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:3.30.930.10 485 690 8.0E-66 T 31-10-2018 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SMART SM00873 211 384 2.1E-95 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:2.40.50.140 39 153 3.2E-73 T 31-10-2018 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 46.978 T 31-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Pfam PF03484 tRNA synthetase B5 domain 405 471 1.9E-19 T 31-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 7.5E-31 T 31-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SUPERFAMILY SSF46955 403 475 5.49E-18 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SUPERFAMILY SSF50249 39 190 2.08E-49 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SMART SM00896 698 791 1.9E-46 T 31-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Pfam PF03483 B3/4 domain 211 383 1.9E-70 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:3.30.70.380 699 792 3.0E-33 T 31-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SMART SM00874 402 471 1.2E-27 T 31-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SUPERFAMILY SSF54991 692 791 2.09E-32 T 31-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:3.50.40.10 196 394 4.8E-81 T 31-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Pfam PF01588 Putative tRNA binding domain 45 144 1.2E-24 T 31-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:3.30.56.10 400 475 2.4E-28 T 31-10-2018 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 Gene3D G3DSA:3.30.56.10 4 181 3.2E-73 T 31-10-2018 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SUPERFAMILY SSF56037 195 394 1.8E-74 T 31-10-2018 Y89_2305 4367c0bea44572a1ebf1b5e43e4282f9 792 SUPERFAMILY SSF55681 467 683 7.45E-54 T 31-10-2018 Y89_3956 2c818f6736a83667de76b2ab72b9d1e8 196 Pfam PF01583 Adenylylsulphate kinase 23 176 3.2E-67 T 31-10-2018 Y89_3956 2c818f6736a83667de76b2ab72b9d1e8 196 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 11 190 4.6E-69 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y89_3956 2c818f6736a83667de76b2ab72b9d1e8 196 Gene3D G3DSA:3.40.50.300 5 195 1.9E-74 T 31-10-2018 Y89_3956 2c818f6736a83667de76b2ab72b9d1e8 196 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 22 194 36.102 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Y89_3956 2c818f6736a83667de76b2ab72b9d1e8 196 SUPERFAMILY SSF52540 19 191 2.41E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2090 a462a1661eb4ff95d3fa5bac8eb72239 369 Gene3D G3DSA:3.20.20.70 3 368 8.7E-143 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2090 a462a1661eb4ff95d3fa5bac8eb72239 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 341 5.8E-93 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_2090 a462a1661eb4ff95d3fa5bac8eb72239 369 SUPERFAMILY SSF51395 3 365 2.13E-127 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 652 8.3E-214 T 31-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 SUPERFAMILY SSF54862 81 213 1.17E-33 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 SUPERFAMILY SSF53706 219 685 4.19E-86 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 127 1.1E-14 T 31-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Gene3D G3DSA:2.20.25.90 221 275 4.7E-13 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 3.5E-12 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Pfam PF00384 Molybdopterin oxidoreductase 550 635 1.0E-10 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 75 2.7E-10 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Gene3D G3DSA:3.10.20.740 1 128 1.0E-27 T 31-10-2018 Y89_2446 922facb096e6a080d97af0f13bce4811 905 SUPERFAMILY SSF50692 812 889 9.27E-8 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_2446 922facb096e6a080d97af0f13bce4811 905 SMART SM00926 221 275 1.4E-11 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 SUPERFAMILY SSF54292 1 77 7.88E-19 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2446 922facb096e6a080d97af0f13bce4811 905 SMART SM00929 88 128 2.6E-19 T 31-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2446 922facb096e6a080d97af0f13bce4811 905 Gene3D G3DSA:3.40.50.740 479 687 8.1E-17 T 31-10-2018 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Pfam PF01209 ubiE/COQ5 methyltransferase family 25 255 5.9E-99 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 30 255 2.4E-84 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 SUPERFAMILY SSF53335 18 253 2.79E-52 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 41 56 - T 31-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 163 177 - T 31-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 21 255 39.028 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Y89_5735 6a593f91dcc483f7a9f0bd6c6838bbd3 256 Gene3D G3DSA:3.40.50.150 36 256 1.2E-76 T 31-10-2018 Y89_0495 09eb535c641be6a492342779b8c7721e 133 Gene3D G3DSA:3.10.129.10 1 133 5.3E-44 T 31-10-2018 Y89_0495 09eb535c641be6a492342779b8c7721e 133 Pfam PF03061 Thioesterase superfamily 47 123 5.0E-16 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_0495 09eb535c641be6a492342779b8c7721e 133 SUPERFAMILY SSF54637 4 131 3.74E-29 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF46689 251 301 1.93E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 Pfam PF12833 Helix-turn-helix domain 220 299 1.1E-15 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 Pfam PF02311 AraC-like ligand binding domain 47 184 4.0E-28 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF51215 36 187 3.53E-32 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 Gene3D G3DSA:2.60.120.280 49 187 6.2E-10 T 31-10-2018 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 SUPERFAMILY SSF46689 203 246 1.16E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 SMART SM00342 214 297 8.7E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 2.7E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 2.7E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1455 cbe9dd687a60d0c71ff4b9616691dcfb 307 Gene3D G3DSA:1.10.10.60 197 303 4.8E-26 T 31-10-2018 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 352 361 - T 31-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 149 165 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 299 326 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 327 342 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 202 224 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 103 114 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 359 370 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 166 181 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00359 B-class P450 signature 350 359 2.3E-36 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00385 P450 superfamily signature 350 359 3.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00385 P450 superfamily signature 248 265 3.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00385 P450 superfamily signature 359 370 3.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 PRINTS PR00385 P450 superfamily signature 283 294 3.3E-5 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 SUPERFAMILY SSF48264 13 408 4.98E-91 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 Gene3D G3DSA:1.10.630.10 6 412 1.2E-111 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2534 f661bcada42732bf39d981f831b37a6b 415 Pfam PF00067 Cytochrome P450 197 379 2.2E-28 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 SUPERFAMILY SSF51905 7 261 2.0E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Gene3D G3DSA:1.10.150.570 567 620 4.8E-24 T 31-10-2018 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 620 1.8E-278 T 31-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.4E-5 T 31-10-2018 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 8.4E-5 T 31-10-2018 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 31-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Gene3D G3DSA:3.50.50.60 294 458 7.9E-56 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Gene3D G3DSA:3.50.50.60 2 234 1.3E-88 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 SMART SM01228 544 615 1.5E-41 T 31-10-2018 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 622 42.533 T 31-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Pfam PF01134 Glucose inhibited division protein A 8 399 8.9E-170 T 31-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Pfam PF13932 GidA associated domain 402 614 7.3E-77 T 31-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 31-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Y89_6305 0775a5ee9f1ddd6abc22147b2fe49903 630 Gene3D G3DSA:1.10.10.1800 459 548 1.0E-26 T 31-10-2018 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 SMART SM00436 122 217 1.1E-34 T 31-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 308 323 - T 31-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Pfam PF01751 Toprim domain 3 128 1.9E-16 T 31-10-2018 IPR006171 TOPRIM domain Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Pfam PF01131 DNA topoisomerase 152 590 2.2E-110 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Gene3D G3DSA:1.10.460.10 156 603 4.6E-149 T 31-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 3.0E-25 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 3.0E-25 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 96 109 3.0E-25 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 522 536 3.0E-25 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 187 205 3.0E-25 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 651 5.8E-221 T 31-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 621 655 1.5E-9 T 31-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Gene3D G3DSA:1.10.290.10 280 409 4.6E-149 T 31-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 SUPERFAMILY SSF56712 1 606 2.49E-177 T 31-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 SMART SM00437 271 559 6.0E-64 T 31-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 SUPERFAMILY SSF57783 619 655 2.89E-9 T 31-10-2018 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Gene3D G3DSA:2.70.20.10 211 489 4.6E-149 T 31-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 SMART SM00493 1 122 2.4E-23 T 31-10-2018 IPR006171 TOPRIM domain Y89_4643 aac223d18b3d986b3a90a01694d54d14 674 Gene3D G3DSA:3.40.50.140 1 149 4.3E-50 T 31-10-2018 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 Pfam PF00501 AMP-binding enzyme 95 525 2.1E-43 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 Gene3D G3DSA:3.40.50.12780 72 521 8.8E-58 T 31-10-2018 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 269 280 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 2 651 3.2E-276 T 31-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 Gene3D G3DSA:3.30.300.30 524 646 2.3E-12 T 31-10-2018 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 SUPERFAMILY SSF56801 19 643 6.02E-128 T 31-10-2018 Y89_3326 82ed2b0de36d0ed88d4593651c903e83 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 36 91 1.8E-11 T 31-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Gene3D G3DSA:3.30.450.20 66 174 1.7E-69 T 31-10-2018 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Pfam PF02743 Cache domain 37 260 3.2E-31 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 SUPERFAMILY SSF58104 320 629 1.07E-75 T 31-10-2018 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 SUPERFAMILY SSF103190 84 184 3.92E-10 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 SMART SM00283 367 628 7.2E-96 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Gene3D G3DSA:3.30.450.20 54 272 1.7E-69 T 31-10-2018 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 594 9.5E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Pfam PF00672 HAMP domain 299 348 8.4E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 SMART SM00304 298 352 5.5E-15 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 SMART SM00304 387 447 18.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4794 a8caebb82cf0bdc69bce178a19af87da 629 Gene3D G3DSA:1.10.287.950 298 629 2.2E-75 T 31-10-2018 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 290 444 4.5E-29 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 SUPERFAMILY SSF47203 295 447 1.77E-40 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 Gene3D G3DSA:2.40.110.20 132 290 1.3E-57 T 31-10-2018 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 Gene3D G3DSA:1.20.140.10 291 446 4.9E-35 T 31-10-2018 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 182 278 2.7E-12 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 SUPERFAMILY SSF56645 61 299 1.69E-36 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1050 7ad39e66c8458b85c83484d4526c83cf 549 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 403 422 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 Pfam PF12146 Serine aminopeptidase, S33 67 171 2.1E-15 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 156 169 2.3E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 110 2.3E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 2.3E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 98 109 3.0E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 142 156 3.0E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 71 79 3.0E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 Gene3D G3DSA:3.40.50.1820 25 276 2.5E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1331 4cbb6e0bb9412ad904f1d68619e2cdc0 301 SUPERFAMILY SSF53474 26 276 1.44E-42 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 SUPERFAMILY SSF103263 4 354 2.49E-148 T 31-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00789 Chorismate synthase signature 3. 318 334 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 Hamap MF_00300 Chorismate synthase [aroC]. 10 351 37.167 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 Pfam PF01264 Chorismate synthase 10 344 2.9E-139 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 PIRSF PIRSF001456 3 359 8.8E-140 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 Gene3D G3DSA:3.60.150.10 1 361 2.9E-153 T 31-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3653 9d408bffe2a7c901e1f4e36aa3c957f1 363 TIGRFAM TIGR00033 aroC: chorismate synthase 10 349 2.6E-140 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Y89_3220 28e488e457121d5d195f97e206166123 471 Gene3D G3DSA:1.20.1250.20 259 467 2.9E-19 T 31-10-2018 Y89_3220 28e488e457121d5d195f97e206166123 471 Pfam PF07690 Major Facilitator Superfamily 15 409 1.4E-53 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3220 28e488e457121d5d195f97e206166123 471 SUPERFAMILY SSF103473 9 462 1.7E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3220 28e488e457121d5d195f97e206166123 471 Gene3D G3DSA:1.20.1720.10 11 255 3.3E-46 T 31-10-2018 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 6.8E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 6.8E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 6.8E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 SMART SM00388 225 289 3.8E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 Gene3D G3DSA:1.10.287.130 176 289 2.4E-18 T 31-10-2018 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 SUPERFAMILY SSF55874 332 437 1.09E-25 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 Gene3D G3DSA:3.30.565.10 299 440 4.9E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 439 4.6E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 288 7.7E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 SMART SM00387 334 440 2.7E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 SUPERFAMILY SSF47384 208 287 7.26E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2721 bb5662816838f1e762860a668a2c2dfd 440 Pfam PF08521 Two-component sensor kinase N-terminal 16 147 3.0E-9 T 31-10-2018 IPR013727 Two-component sensor kinase, N-terminal Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Gene3D G3DSA:3.30.1370.120 260 330 1.1E-11 T 31-10-2018 IPR038591 NolW-like superfamily Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Gene3D G3DSA:3.30.1370.120 95 256 3.5E-50 T 31-10-2018 IPR038591 NolW-like superfamily Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Pfam PF03958 Bacterial type II/III secretion system short domain 263 332 3.3E-12 T 31-10-2018 IPR005644 NolW-like Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Pfam PF03958 Bacterial type II/III secretion system short domain 339 482 1.8E-11 T 31-10-2018 IPR005644 NolW-like Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Pfam PF03958 Bacterial type II/III secretion system short domain 199 259 1.9E-10 T 31-10-2018 IPR005644 NolW-like Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 PRINTS PR00811 Bacterial general secretion pathway protein D signature 719 733 1.2E-26 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 PRINTS PR00811 Bacterial general secretion pathway protein D signature 696 714 1.2E-26 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 PRINTS PR00811 Bacterial general secretion pathway protein D signature 482 492 1.2E-26 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 PRINTS PR00811 Bacterial general secretion pathway protein D signature 597 607 1.2E-26 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 PRINTS PR00811 Bacterial general secretion pathway protein D signature 562 586 1.2E-26 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 104 741 1.2E-198 T 31-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Y89_4748 8bbb7e3f300f23cba15d4f213ddbd9a5 803 Pfam PF00263 Bacterial type II and III secretion system protein 566 732 5.0E-49 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_3866 5cde4faf0a8f24380e572d93951e1878 111 SUPERFAMILY SSF160544 10 86 3.14E-19 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3866 5cde4faf0a8f24380e572d93951e1878 111 Gene3D G3DSA:3.40.1690.10 9 87 5.9E-22 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3866 5cde4faf0a8f24380e572d93951e1878 111 Pfam PF01312 FlhB HrpN YscU SpaS Family 12 81 2.1E-16 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF51735 4 153 9.97E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 PIRSF PIRSF006205 4 396 8.9E-149 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF55347 129 272 1.8E-61 T 31-10-2018 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 390 46.959 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Gene3D G3DSA:1.10.1740.10 311 395 3.7E-30 T 31-10-2018 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 135 8.8E-43 T 31-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 269 385 2.0E-43 T 31-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 389 9.3E-158 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Gene3D G3DSA:3.40.50.720 1 153 5.0E-49 T 31-10-2018 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 149 237 8.3E-38 T 31-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_1376 c59dcb149784e9b68dec1a7a9e07b570 396 SUPERFAMILY SSF69055 300 393 1.7E-30 T 31-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Y89_2711 99cca0803c169682f18a4833539e4a82 124 Gene3D G3DSA:2.60.120.10 5 106 2.0E-36 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2711 99cca0803c169682f18a4833539e4a82 124 Pfam PF07883 Cupin domain 42 101 7.4E-13 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_2711 99cca0803c169682f18a4833539e4a82 124 SUPERFAMILY SSF51182 5 110 3.66E-26 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4696 e6fe95c0192a9566d78aaa4f5962fddc 510 Pfam PF14319 Transposase zinc-binding domain 52 149 8.1E-22 T 31-10-2018 IPR026889 Transposase zinc-binding domain Y89_4696 e6fe95c0192a9566d78aaa4f5962fddc 510 Pfam PF04986 Putative transposase 179 403 2.4E-47 T 31-10-2018 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Y89_4699 e6fe95c0192a9566d78aaa4f5962fddc 510 Pfam PF14319 Transposase zinc-binding domain 52 149 8.1E-22 T 31-10-2018 IPR026889 Transposase zinc-binding domain Y89_4699 e6fe95c0192a9566d78aaa4f5962fddc 510 Pfam PF04986 Putative transposase 179 403 2.4E-47 T 31-10-2018 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Y89_2068 662cb72a79f033873daccf8bc8836398 249 PIRSF PIRSF000090 1 249 7.1E-83 T 31-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Y89_2068 662cb72a79f033873daccf8bc8836398 249 Gene3D G3DSA:3.40.50.620 1 247 1.6E-87 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2068 662cb72a79f033873daccf8bc8836398 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 31-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Y89_2068 662cb72a79f033873daccf8bc8836398 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 3.6E-46 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_2068 662cb72a79f033873daccf8bc8836398 249 SUPERFAMILY SSF52402 1 244 6.42E-85 T 31-10-2018 Y89_2068 662cb72a79f033873daccf8bc8836398 249 SMART SM00893 23 211 7.4E-68 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_1410 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Hamap MF_01114 Regulatory protein RecX [recX]. 6 153 13.77 T 31-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Y89_1410 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 10 55 4.1E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1410 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 57 101 3.1E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1410 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Pfam PF02631 RecX family 33 148 3.8E-32 T 31-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Y89_1410 9a23dbbf5c8d09507ce58bb4b4c3277c 153 Gene3D G3DSA:1.10.10.10 103 152 8.8E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 SUPERFAMILY SSF103473 13 427 1.7E-56 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 Gene3D G3DSA:1.20.1250.20 239 431 1.8E-27 T 31-10-2018 Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 PIRSF PIRSF002808 2 441 7.3E-78 T 31-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 Gene3D G3DSA:1.20.1250.20 14 218 1.0E-42 T 31-10-2018 Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 Pfam PF07690 Major Facilitator Superfamily 287 425 1.6E-9 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3767 c2ca7385c6dc30402408a5881fecfb7d 453 Pfam PF07690 Major Facilitator Superfamily 29 274 5.5E-31 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1370 861a105354ee3f8f00326bcc74513910 246 Pfam PF00318 Ribosomal protein S2 9 224 8.7E-95 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.671 T 31-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1370 861a105354ee3f8f00326bcc74513910 246 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 31-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.2E-37 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 Gene3D G3DSA:1.10.287.610 103 150 1.1E-91 T 31-10-2018 Y89_1370 861a105354ee3f8f00326bcc74513910 246 Gene3D G3DSA:3.40.50.10490 8 219 1.1E-91 T 31-10-2018 Y89_1370 861a105354ee3f8f00326bcc74513910 246 SUPERFAMILY SSF52313 6 231 4.45E-96 T 31-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Y89_1370 861a105354ee3f8f00326bcc74513910 246 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 31-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Y89_1370 861a105354ee3f8f00326bcc74513910 246 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 9.0E-106 T 31-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1099 c5ffd858610f2129d0022842a797dc1e 560 Gene3D G3DSA:3.40.50.12780 14 442 1.3E-109 T 31-10-2018 Y89_1099 c5ffd858610f2129d0022842a797dc1e 560 SUPERFAMILY SSF56801 29 546 4.45E-132 T 31-10-2018 Y89_1099 c5ffd858610f2129d0022842a797dc1e 560 Pfam PF00501 AMP-binding enzyme 34 447 2.5E-89 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1099 c5ffd858610f2129d0022842a797dc1e 560 Gene3D G3DSA:3.30.300.310 443 551 1.2E-29 T 31-10-2018 Y89_1099 c5ffd858610f2129d0022842a797dc1e 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 536 1.0E-18 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 31-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 305 37.017 T 31-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 SUPERFAMILY SSF50486 208 307 6.87E-31 T 31-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 SUPERFAMILY SSF53328 5 210 6.67E-67 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 306 1.2E-94 T 31-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 Gene3D G3DSA:3.10.25.10 210 312 1.5E-28 T 31-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 Pfam PF02911 Formyl transferase, C-terminal domain 207 302 1.2E-25 T 31-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 Pfam PF00551 Formyl transferase 6 184 4.1E-47 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_0024 2f0197bbd13caa6b6554e8ee499f8be3 314 Gene3D G3DSA:3.40.50.170 1 209 1.5E-81 T 31-10-2018 Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 Pfam PF01011 PQQ enzyme repeat 532 568 1.2E-10 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 34 586 2.4E-238 T 31-10-2018 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 51 79 - T 31-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 Pfam PF13360 PQQ-like domain 82 339 1.1E-16 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 452 517 540.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 147 178 1.4E-5 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 97 129 8.2E-8 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 361 397 470.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 527 558 6.8E-7 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SMART SM00564 192 235 200.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 Gene3D G3DSA:2.140.10.10 35 616 4.0E-259 T 31-10-2018 Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 SUPERFAMILY SSF50998 46 609 8.11E-149 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y89_3341 61f2a5f0426372d53c20b69d54a65c1f 623 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 282 303 - T 31-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 Pfam PF00107 Zinc-binding dehydrogenase 146 260 1.1E-19 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 Gene3D G3DSA:3.90.180.10 11 313 8.8E-93 T 31-10-2018 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 SMART SM00829 9 313 2.9E-41 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 SUPERFAMILY SSF50129 11 136 8.33E-37 T 31-10-2018 IPR011032 GroES-like superfamily Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 Gene3D G3DSA:3.40.50.720 115 252 8.8E-93 T 31-10-2018 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 8 314 9.4E-119 T 31-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 SUPERFAMILY SSF51735 106 277 2.22E-38 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1758 5c6d3f8bfb2417c2b24f61cac5bc973a 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 82 1.1E-6 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 Gene3D G3DSA:3.40.190.10 122 222 1.3E-41 T 31-10-2018 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 SUPERFAMILY SSF53850 58 326 2.49E-36 T 31-10-2018 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 Pfam PF13379 NMT1-like family 24 267 1.4E-14 T 31-10-2018 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 SUPERFAMILY SSF160387 372 465 5.23E-14 T 31-10-2018 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 Gene3D G3DSA:1.10.8.450 255 281 1.3E-41 T 31-10-2018 Y89_2958 af5edd56c519ac442b4601c85a771c29 468 Gene3D G3DSA:3.40.190.10 42 254 1.3E-41 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 Gene3D G3DSA:1.10.246.130 252 365 4.6E-33 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 Gene3D G3DSA:3.60.20.40 366 549 2.0E-64 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 364 388 - T 31-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 SUPERFAMILY SSF56235 26 553 4.82E-172 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 Pfam PF01019 Gamma-glutamyltranspeptidase 45 550 3.1E-175 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 444 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 364 382 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 388 406 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 236 252 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 453 470 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 142 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 52 77 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 142 161 2.8E-73 T 31-10-2018 Y89_4012 52b5dd9be6ed64c2a551229b1d1b089a 557 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 32 547 1.2E-155 T 31-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Y89_5738 4fb2fcab1a2724bba55d318d23fbe346 134 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 30 104 1.7E-33 T 31-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y89_5738 4fb2fcab1a2724bba55d318d23fbe346 134 SUPERFAMILY SSF141734 4 120 4.84E-49 T 31-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Y89_5738 4fb2fcab1a2724bba55d318d23fbe346 134 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 53 104 1.0E-24 T 31-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y89_5738 4fb2fcab1a2724bba55d318d23fbe346 134 Gene3D G3DSA:3.10.20.400 3 95 3.4E-38 T 31-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Y89_5738 4fb2fcab1a2724bba55d318d23fbe346 134 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 4 108 32.986 T 31-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 SUPERFAMILY SSF52172 5 132 1.29E-36 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 Gene3D G3DSA:1.10.10.10 138 243 7.1E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 SMART SM00448 5 120 4.7E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 SMART SM00862 162 237 2.1E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 237 6.8E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 SUPERFAMILY SSF46894 138 238 3.4E-25 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 Pfam PF00072 Response regulator receiver domain 7 120 4.9E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5654 5576a940bdf8d5510159d02b6364fd59 244 Gene3D G3DSA:3.40.50.2300 2 137 3.5E-34 T 31-10-2018 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.769 T 31-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 188 204 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 135 148 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 247 262 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 707 733 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 8.9E-69 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 31-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 Gene3D G3DSA:1.20.1440.90 303 388 9.0E-25 T 31-10-2018 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 SUPERFAMILY SSF51621 5 878 0.0 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 136 147 - T 31-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_1339 80b2445035c4e74cdc817b3bd06cc8a7 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 131 878 2.0E-275 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Y89_0142 5a849b0b8d3c0807f1037ae04119460a 475 PIRSF PIRSF006060 8 472 6.7E-74 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_0142 5a849b0b8d3c0807f1037ae04119460a 475 Gene3D G3DSA:1.20.1740.10 21 466 7.1E-66 T 31-10-2018 Y89_0142 5a849b0b8d3c0807f1037ae04119460a 475 Pfam PF00324 Amino acid permease 26 449 2.3E-117 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_0142 5a849b0b8d3c0807f1037ae04119460a 475 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_0142 5a849b0b8d3c0807f1037ae04119460a 475 TIGRFAM TIGR01773 GABAperm: GABA permease 1 461 2.7E-253 T 31-10-2018 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 Y89_3386 b8b06b854a1cef90541d8960f0349926 273 Pfam PF00665 Integrase core domain 106 221 3.1E-32 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_3386 b8b06b854a1cef90541d8960f0349926 273 SUPERFAMILY SSF53098 99 261 1.9E-41 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3386 b8b06b854a1cef90541d8960f0349926 273 Gene3D G3DSA:3.30.420.10 97 240 3.9E-16 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3386 b8b06b854a1cef90541d8960f0349926 273 Pfam PF13276 HTH-like domain 29 81 1.8E-13 T 31-10-2018 IPR025948 HTH-like domain Y89_4378 b8b06b854a1cef90541d8960f0349926 273 Pfam PF00665 Integrase core domain 106 221 3.1E-32 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_4378 b8b06b854a1cef90541d8960f0349926 273 SUPERFAMILY SSF53098 99 261 1.9E-41 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4378 b8b06b854a1cef90541d8960f0349926 273 Gene3D G3DSA:3.30.420.10 97 240 3.9E-16 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_4378 b8b06b854a1cef90541d8960f0349926 273 Pfam PF13276 HTH-like domain 29 81 1.8E-13 T 31-10-2018 IPR025948 HTH-like domain Y89_4482 d269641effb5f63d36695e754020b81c 298 Gene3D G3DSA:3.40.190.290 93 295 1.2E-40 T 31-10-2018 Y89_4482 d269641effb5f63d36695e754020b81c 298 SUPERFAMILY SSF53850 90 295 1.96E-43 T 31-10-2018 Y89_4482 d269641effb5f63d36695e754020b81c 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.1E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4482 d269641effb5f63d36695e754020b81c 298 Gene3D G3DSA:1.10.10.10 3 89 2.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4482 d269641effb5f63d36695e754020b81c 298 Pfam PF03466 LysR substrate binding domain 91 293 9.2E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4482 d269641effb5f63d36695e754020b81c 298 SUPERFAMILY SSF46785 1 113 6.31E-26 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:3.40.190.10 168 272 7.7E-28 T 31-10-2018 Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.2E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:1.10.10.10 2 90 3.5E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 Gene3D G3DSA:3.40.190.10 95 289 7.7E-28 T 31-10-2018 Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 SUPERFAMILY SSF46785 1 113 2.72E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 Pfam PF03466 LysR substrate binding domain 90 298 2.4E-28 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2920 88d885686d25da1479f87a4c39dc0db8 303 SUPERFAMILY SSF53850 92 298 5.07E-28 T 31-10-2018 Y89_0227 1b8e9d25eddef58dab957b2ee7d94c94 477 PIRSF PIRSF006060 2 472 1.1E-81 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_0227 1b8e9d25eddef58dab957b2ee7d94c94 477 Pfam PF13520 Amino acid permease 21 411 2.3E-38 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_0227 1b8e9d25eddef58dab957b2ee7d94c94 477 Gene3D G3DSA:1.20.1740.10 11 448 2.0E-60 T 31-10-2018 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 Hamap MF_01932 AMP nucleosidase [amn]. 8 491 59.128 T 31-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 16 491 2.1E-251 T 31-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 Gene3D G3DSA:3.30.1730.10 10 177 1.3E-53 T 31-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 17 171 5.4E-50 T 31-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 Pfam PF01048 Phosphorylase superfamily 276 460 2.1E-16 T 31-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 Gene3D G3DSA:3.40.50.1580 179 491 6.3E-103 T 31-10-2018 Y89_1052 e2fd6cb49cc87b81d835b46a398a70ef 491 SUPERFAMILY SSF53167 14 491 1.31E-143 T 31-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Y89_6399 0ca797a6ee4ebeea769cb1087c24b01c 223 Gene3D G3DSA:3.40.30.10 40 218 2.6E-47 T 31-10-2018 Y89_6399 0ca797a6ee4ebeea769cb1087c24b01c 223 Pfam PF13462 Thioredoxin 48 202 3.5E-17 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_6399 0ca797a6ee4ebeea769cb1087c24b01c 223 SUPERFAMILY SSF52833 23 213 9.33E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3732 c6ebff03f360dbf73055614c30636149 140 Gene3D G3DSA:1.10.10.10 2 139 3.7E-40 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3732 c6ebff03f360dbf73055614c30636149 140 Pfam PF01047 MarR family 36 93 4.0E-13 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3732 c6ebff03f360dbf73055614c30636149 140 SMART SM00347 29 129 3.2E-18 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3732 c6ebff03f360dbf73055614c30636149 140 SUPERFAMILY SSF46785 3 139 4.29E-32 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3732 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.4E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3732 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.4E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_3732 c6ebff03f360dbf73055614c30636149 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 1.4E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_4729 12b0f0069262564198c25f5bf03ef1c2 464 SUPERFAMILY SSF75304 2 451 9.94E-123 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4729 12b0f0069262564198c25f5bf03ef1c2 464 Pfam PF01425 Amidase 28 442 3.5E-89 T 31-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4729 12b0f0069262564198c25f5bf03ef1c2 464 Gene3D G3DSA:3.90.1300.10 2 456 3.9E-122 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_5589 348272fdea833b8360d27a71981dafe9 399 Gene3D G3DSA:3.20.140.10 1 399 2.8E-170 T 31-10-2018 Y89_5589 348272fdea833b8360d27a71981dafe9 399 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 398 4.8E-155 T 31-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_5589 348272fdea833b8360d27a71981dafe9 399 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 171 398 1.7E-88 T 31-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y89_5589 348272fdea833b8360d27a71981dafe9 399 SUPERFAMILY SSF54675 5 139 5.3E-42 T 31-10-2018 Y89_5589 348272fdea833b8360d27a71981dafe9 399 PIRSF PIRSF000484 1 383 1.2E-64 T 31-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Y89_5589 348272fdea833b8360d27a71981dafe9 399 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 399 51.346 T 31-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_5589 348272fdea833b8360d27a71981dafe9 399 SUPERFAMILY SSF51690 122 397 2.35E-91 T 31-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Y89_3561 1388bc590785bbd564bdc2b9beb3038f 336 Pfam PF12697 Alpha/beta hydrolase family 58 265 4.1E-12 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3561 1388bc590785bbd564bdc2b9beb3038f 336 Gene3D G3DSA:3.40.50.1820 213 314 1.0E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3561 1388bc590785bbd564bdc2b9beb3038f 336 SUPERFAMILY SSF53474 49 313 3.46E-35 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3561 1388bc590785bbd564bdc2b9beb3038f 336 Gene3D G3DSA:3.40.50.1820 22 202 2.2E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Gene3D G3DSA:2.40.50.100 591 660 9.8E-21 T 31-10-2018 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 SUPERFAMILY SSF51230 584 658 1.7E-19 T 31-10-2018 IPR011053 Single hybrid motif Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Gene3D G3DSA:3.30.470.130 1 449 1.1E-197 T 31-10-2018 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 614 631 - T 31-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 SUPERFAMILY SSF52440 3 115 7.19E-51 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 SUPERFAMILY SSF51246 333 447 1.36E-36 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 324 1.5E-72 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Pfam PF00364 Biotin-requiring enzyme 591 656 1.9E-13 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Pfam PF00289 Biotin carboxylase, N-terminal domain 4 112 9.9E-47 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 SMART SM00878 338 444 4.3E-51 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 288 295 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 SUPERFAMILY SSF56059 85 347 3.01E-68 T 31-10-2018 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 155 169 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_2131 4f6fc1294b1963011afb0a250d3d49a3 661 Pfam PF02785 Biotin carboxylase C-terminal domain 338 444 1.3E-32 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 3.2E-27 T 31-10-2018 IPR021131 Ribosomal protein L18e/L15P Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 Gene3D G3DSA:3.100.10.10 67 144 1.4E-13 T 31-10-2018 Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 142 2.4E-43 T 31-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 SUPERFAMILY SSF52080 4 142 2.62E-42 T 31-10-2018 IPR036227 Ribosomal L18e/L15P superfamily Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 31-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0778 0584c53260dd3c6ac75a1348a178b33a 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 17.557 T 31-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Y89_2389 73d6cdba32d6e0d0547bd789694af618 226 Gene3D G3DSA:3.40.50.850 2 206 1.1E-45 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_2389 73d6cdba32d6e0d0547bd789694af618 226 Pfam PF00857 Isochorismatase family 14 167 1.8E-27 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_2389 73d6cdba32d6e0d0547bd789694af618 226 SUPERFAMILY SSF52499 4 206 3.27E-44 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_5243 29613d44cd572b5f82abcc64919f5cde 204 SUPERFAMILY SSF143081 3 199 1.7E-43 T 31-10-2018 IPR036590 SOS response associated peptidase-like Y89_5243 29613d44cd572b5f82abcc64919f5cde 204 Gene3D G3DSA:3.90.1680.10 1 204 1.2E-41 T 31-10-2018 IPR036590 SOS response associated peptidase-like Y89_5243 29613d44cd572b5f82abcc64919f5cde 204 Pfam PF02586 SOS response associated peptidase (SRAP) 1 191 1.1E-33 T 31-10-2018 IPR003738 SOS response associated peptidase (SRAP) Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 7.6E-41 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 SUPERFAMILY SSF55174 1 91 9.81E-15 T 31-10-2018 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 SMART SM00363 1 58 5.2E-8 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 Gene3D G3DSA:3.30.70.580 63 227 5.7E-51 T 31-10-2018 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 Pfam PF01479 S4 domain 1 42 1.3E-8 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 SUPERFAMILY SSF55120 61 227 5.44E-43 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 Gene3D G3DSA:3.10.290.10 1 62 6.9E-15 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 Pfam PF00849 RNA pseudouridylate synthase 62 190 1.2E-12 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_4628 14d8565c4c58369e6ab64cb1a7dccdbe 230 Gene3D G3DSA:3.30.70.1560 128 209 5.7E-51 T 31-10-2018 Y89_3471 cd993a83a453d83efd91840254d55daa 480 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 13 468 3.2E-213 T 31-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y89_3471 cd993a83a453d83efd91840254d55daa 480 SUPERFAMILY SSF81442 11 468 4.84E-118 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3471 cd993a83a453d83efd91840254d55daa 480 Gene3D G3DSA:1.20.210.10 6 475 2.1E-201 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3471 cd993a83a453d83efd91840254d55daa 480 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 17 446 1.3E-109 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SMART SM00400 36 90 1.8E-34 T 31-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SUPERFAMILY SSF57783 4 101 1.7E-37 T 31-10-2018 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SUPERFAMILY SSF56731 117 427 3.79E-110 T 31-10-2018 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Gene3D G3DSA:3.40.1360.10 244 371 1.5E-44 T 31-10-2018 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Gene3D G3DSA:3.90.580.10 1 102 1.7E-40 T 31-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Pfam PF10410 DnaB-helicase binding domain of primase 374 426 2.5E-9 T 31-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Gene3D G3DSA:3.90.980.10 112 243 1.0E-46 T 31-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SMART SM00493 262 333 2.8E-21 T 31-10-2018 IPR006171 TOPRIM domain Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SMART SM00766 526 654 9.3E-34 T 31-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Hamap MF_00974 DNA primase [dnaG]. 4 655 30.095 T 31-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Gene3D G3DSA:1.20.50.20 372 429 8.2E-20 T 31-10-2018 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 255 5.4E-43 T 31-10-2018 IPR013264 DNA primase, catalytic core, N-terminal Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 SUPERFAMILY SSF117023 525 654 7.85E-27 T 31-10-2018 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Pfam PF13662 Toprim domain 262 331 1.6E-17 T 31-10-2018 IPR006171 TOPRIM domain Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Pfam PF01807 CHC2 zinc finger 6 101 9.9E-42 T 31-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 TIGRFAM TIGR01391 dnaG: DNA primase 5 421 3.8E-147 T 31-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Gene3D G3DSA:1.10.860.10 517 658 2.4E-21 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y89_0649 86597a26ea42adc2bb15d2f37c938f28 664 Pfam PF08278 DNA primase DnaG DnaB-binding 529 652 3.4E-23 T 31-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 SUPERFAMILY SSF69279 192 363 5.61E-35 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Gene3D G3DSA:2.30.110.50 14 333 1.2E-135 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 529 552 5.0E-5 T 31-10-2018 IPR010609 Gp5, C-terminal Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Pfam PF05954 Phage late control gene D protein (GPD) 29 330 1.2E-102 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Gene3D G3DSA:3.30.1920.30 224 286 1.2E-135 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 SUPERFAMILY SSF69279 11 184 9.78E-63 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Gene3D G3DSA:3.55.50.10 98 189 1.2E-135 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 SUPERFAMILY SSF69349 442 660 1.1E-55 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 Gene3D G3DSA:2.40.50.230 355 457 1.8E-49 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 SUPERFAMILY SSF69255 365 452 3.66E-35 T 31-10-2018 Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 2.2E-199 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_2401 2a538e3ed51beae497824f6e4156fc1a 689 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 524 7.7E-207 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF13332 Haemagluttinin repeat 263 321 6.3E-6 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF13332 Haemagluttinin repeat 341 404 3.4E-6 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF13332 Haemagluttinin repeat 194 260 4.0E-6 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF13332 Haemagluttinin repeat 143 193 0.0058 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 78 114 0.013 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 147 178 0.15 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 59 98 1.6E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF04830 Possible hemagglutinin (DUF637) 533 583 1.0E-9 T 31-10-2018 IPR006915 Domain of unknown function DUF637, haemagglutinin putative Y89_0049 36ffcb3d0ce7eef9aaf5f9573d1c30e5 997 Pfam PF04830 Possible hemagglutinin (DUF637) 588 667 2.3E-14 T 31-10-2018 IPR006915 Domain of unknown function DUF637, haemagglutinin putative Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 SMART SM00862 151 225 6.4E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 Gene3D G3DSA:3.40.50.2300 2 126 4.9E-40 T 31-10-2018 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 SUPERFAMILY SSF52172 3 125 2.85E-44 T 31-10-2018 IPR011006 CheY-like superfamily Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 Gene3D G3DSA:1.10.10.10 127 228 1.3E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 226 3.5E-109 T 31-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 SMART SM00448 4 117 8.3E-46 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 SUPERFAMILY SSF46894 128 226 7.11E-29 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.4E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_6098 3b61ef0ae834381c5006c92e8233f6e5 229 Pfam PF00072 Response regulator receiver domain 6 117 1.5E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 139 154 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 292 306 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 114 122 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 125 138 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 201 214 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 349 360 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 406 419 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 215 228 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 PRINTS PR00415 Aconitase family signature 88 101 7.5E-48 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 3.5E-233 T 31-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.6E-159 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 473 61.578 T 31-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 SUPERFAMILY SSF53732 2 472 2.49E-163 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 Gene3D G3DSA:3.30.499.10 332 474 1.1E-49 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y89_1898 922f5b848e2337631c98e688e7f83e30 474 Gene3D G3DSA:3.30.499.20 5 292 4.9E-97 T 31-10-2018 Y89_5834 16a071c4edc24c44346f2669ba432b27 509 Gene3D G3DSA:1.20.1720.10 16 202 2.1E-45 T 31-10-2018 Y89_5834 16a071c4edc24c44346f2669ba432b27 509 SUPERFAMILY SSF103473 8 496 3.01E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5834 16a071c4edc24c44346f2669ba432b27 509 Gene3D G3DSA:1.20.1250.20 203 432 9.1E-17 T 31-10-2018 Y89_5834 16a071c4edc24c44346f2669ba432b27 509 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 493 1.3E-155 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Y89_5834 16a071c4edc24c44346f2669ba432b27 509 Pfam PF07690 Major Facilitator Superfamily 19 413 4.9E-52 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 Gene3D G3DSA:3.40.640.10 69 317 2.6E-184 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.701 T 31-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 SUPERFAMILY SSF53383 2 424 8.21E-135 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 Gene3D G3DSA:3.90.1150.10 7 420 2.6E-184 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 4.0E-192 T 31-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Y89_1045 8f5a4b53820691c6984dee37afd8901b 427 Pfam PF00202 Aminotransferase class-III 32 394 8.0E-77 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 SUPERFAMILY SSF89095 297 402 3.66E-35 T 31-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 144 158 - T 31-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 Gene3D G3DSA:1.10.150.380 297 414 1.3E-35 T 31-10-2018 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 480 38.612 T 31-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 Pfam PF02637 GatB domain 328 479 6.5E-52 T 31-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 SMART SM00845 328 479 3.5E-78 T 31-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 Gene3D G3DSA:1.10.10.410 415 481 3.7E-24 T 31-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 SUPERFAMILY SSF55931 4 296 4.12E-120 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 Pfam PF02934 GatB/GatE catalytic domain 5 288 1.8E-111 T 31-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Y89_4974 3ec4d49247af9a163ab435b3444b4032 481 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 2 479 4.7E-171 T 31-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Pfam PF13437 HlyD family secretion protein 245 363 6.6E-13 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Gene3D G3DSA:1.10.287.470 97 131 5.1E-12 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 256 277 1.7E-10 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 75 95 1.7E-10 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 288 312 1.7E-10 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 360 375 1.7E-10 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 SUPERFAMILY SSF111369 187 296 9.42E-11 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Gene3D G3DSA:2.40.30.170 259 377 3.2E-34 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Pfam PF13533 Biotin-lipoyl like 65 109 3.6E-11 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 SUPERFAMILY SSF111369 63 137 7.98E-9 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Gene3D G3DSA:1.10.287.470 137 205 3.3E-5 T 31-10-2018 Y89_4116 f8ddb29b79d9a404e39b68ae91696061 383 Gene3D G3DSA:2.40.50.100 65 96 5.1E-12 T 31-10-2018 Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 SUPERFAMILY SSF54373 219 306 7.46E-21 T 31-10-2018 Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 349 4.5E-82 T 31-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 Gene3D G3DSA:3.50.50.60 6 346 1.7E-93 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 Gene3D G3DSA:3.30.9.10 90 305 1.7E-93 T 31-10-2018 Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 Pfam PF01266 FAD dependent oxidoreductase 4 345 7.3E-69 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_5155 063f9a6c787756913a0a5b1a25ccf056 364 SUPERFAMILY SSF51905 4 360 7.12E-51 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 561 579 5.2E-38 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 584 598 5.2E-38 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 460 470 5.2E-38 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 352 362 5.2E-38 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 PRINTS PR00811 Bacterial general secretion pathway protein D signature 425 449 5.2E-38 T 31-10-2018 IPR001775 GspD/PilQ family Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Gene3D G3DSA:3.30.70.1070 687 770 1.2E-7 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Gene3D G3DSA:3.30.1370.120 273 350 7.3E-13 T 31-10-2018 IPR038591 NolW-like superfamily Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Gene3D G3DSA:3.30.1370.120 200 271 2.0E-12 T 31-10-2018 IPR038591 NolW-like superfamily Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Pfam PF00263 Bacterial type II and III secretion system protein 429 597 1.3E-51 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Pfam PF03958 Bacterial type II/III secretion system short domain 141 200 2.0E-8 T 31-10-2018 IPR005644 NolW-like Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Pfam PF03958 Bacterial type II/III secretion system short domain 206 271 3.3E-10 T 31-10-2018 IPR005644 NolW-like Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Pfam PF03958 Bacterial type II/III secretion system short domain 277 352 5.6E-14 T 31-10-2018 IPR005644 NolW-like Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 48 605 1.7E-157 T 31-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Y89_3457 d9f503a056e98e8a4f71bad2712e5748 776 Gene3D G3DSA:3.30.1370.120 44 198 1.8E-50 T 31-10-2018 IPR038591 NolW-like superfamily Y89_4972 3205b6f06ff956b6aa25efab63eeadeb 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 1.6E-17 T 31-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y89_4972 3205b6f06ff956b6aa25efab63eeadeb 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 2.5E-29 T 31-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y89_4972 3205b6f06ff956b6aa25efab63eeadeb 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 24.079 T 31-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Y89_4972 3205b6f06ff956b6aa25efab63eeadeb 96 SUPERFAMILY SSF141000 3 93 1.7E-28 T 31-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 Y89_4972 3205b6f06ff956b6aa25efab63eeadeb 96 Gene3D G3DSA:1.10.20.60 1 93 1.4E-23 T 31-10-2018 Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 SMART SM00487 20 222 2.7E-62 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 SUPERFAMILY SSF52540 74 359 5.71E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 Gene3D G3DSA:3.40.50.300 214 405 5.6E-47 T 31-10-2018 Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 Gene3D G3DSA:3.40.50.300 1 210 8.3E-77 T 31-10-2018 Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 Pfam PF00271 Helicase conserved C-terminal domain 231 339 3.9E-28 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 Pfam PF00270 DEAD/DEAH box helicase 25 194 7.2E-48 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1073 31fd63fbd29fae26ad4930b5ea6ad220 449 SMART SM00490 258 339 8.0E-30 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 31-10-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 PIRSF PIRSF500125 1 518 1.4E-283 T 31-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 SUPERFAMILY SSF56645 13 282 1.04E-81 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 Gene3D G3DSA:1.10.3140.10 14 151 3.7E-44 T 31-10-2018 Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 482 2.6E-62 T 31-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 Gene3D G3DSA:1.20.140.10 288 477 5.1E-63 T 31-10-2018 Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 Gene3D G3DSA:2.40.110.10 152 282 3.1E-39 T 31-10-2018 Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 281 4.6E-93 T 31-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 PIRSF PIRSF000331 11 501 4.0E-192 T 31-10-2018 IPR004925 HpaB/PvcC/4-BUDH Y89_0933 acdb99f5de259ca980a8b62b195cbf3a 520 SUPERFAMILY SSF47203 272 494 6.7E-45 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_1132 1457c7b9f93f707e65713080b12632be 302 Pfam PF13437 HlyD family secretion protein 155 235 3.6E-10 T 31-10-2018 Y89_1132 1457c7b9f93f707e65713080b12632be 302 Pfam PF13533 Biotin-lipoyl like 45 90 1.6E-16 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_1132 1457c7b9f93f707e65713080b12632be 302 Gene3D G3DSA:2.40.50.100 45 115 1.9E-11 T 31-10-2018 Y89_1132 1457c7b9f93f707e65713080b12632be 302 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 228 7.7E-35 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1132 1457c7b9f93f707e65713080b12632be 302 Gene3D G3DSA:2.40.30.170 168 291 1.2E-24 T 31-10-2018 Y89_1132 1457c7b9f93f707e65713080b12632be 302 SUPERFAMILY SSF111369 43 195 1.28E-22 T 31-10-2018 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 267 1.6E-24 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 SUPERFAMILY SSF111369 58 272 1.44E-36 T 31-10-2018 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 352 3.6E-75 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 Gene3D G3DSA:2.40.50.100 67 195 4.9E-66 T 31-10-2018 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 Gene3D G3DSA:2.40.420.20 278 350 4.9E-66 T 31-10-2018 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 Gene3D G3DSA:1.10.287.470 102 161 4.9E-66 T 31-10-2018 Y89_0816 09b4c664c89e247d6ad7bb58a2a85e5d 370 Gene3D G3DSA:2.40.30.170 58 277 4.9E-66 T 31-10-2018 Y89_0979 63d5584853e6585a69fa176334c30b6c 265 Gene3D G3DSA:3.40.50.1980 139 262 9.2E-27 T 31-10-2018 Y89_0979 63d5584853e6585a69fa176334c30b6c 265 SUPERFAMILY SSF53807 19 261 3.92E-52 T 31-10-2018 Y89_0979 63d5584853e6585a69fa176334c30b6c 265 Pfam PF01497 Periplasmic binding protein 22 218 2.0E-24 T 31-10-2018 IPR002491 ABC transporter periplasmic binding domain Y89_0979 63d5584853e6585a69fa176334c30b6c 265 Gene3D G3DSA:3.40.50.1980 19 138 1.6E-29 T 31-10-2018 Y89_0760 f04d50fc81601fa1adb5c543ea51b6a5 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 200 34.093 T 31-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0760 f04d50fc81601fa1adb5c543ea51b6a5 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 197 1.1E-63 T 31-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Y89_0760 f04d50fc81601fa1adb5c543ea51b6a5 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 197 8.3E-74 T 31-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0760 f04d50fc81601fa1adb5c543ea51b6a5 200 SUPERFAMILY SSF52166 6 199 1.44E-71 T 31-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0760 f04d50fc81601fa1adb5c543ea51b6a5 200 Gene3D G3DSA:3.40.1370.10 4 199 1.6E-67 T 31-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Y89_2651 797d263159546732ea31e60d153b6a52 586 Gene3D G3DSA:3.40.50.150 353 585 9.2E-13 T 31-10-2018 Y89_2651 797d263159546732ea31e60d153b6a52 586 Gene3D G3DSA:3.40.50.1820 3 287 1.5E-45 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2651 797d263159546732ea31e60d153b6a52 586 SUPERFAMILY SSF53335 400 575 1.48E-14 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2651 797d263159546732ea31e60d153b6a52 586 Pfam PF12147 Putative methyltransferase 276 583 1.6E-156 T 31-10-2018 IPR022744 Methyltransferase domain, putative Y89_2651 797d263159546732ea31e60d153b6a52 586 Pfam PF12146 Serine aminopeptidase, S33 32 267 2.3E-66 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_2651 797d263159546732ea31e60d153b6a52 586 SUPERFAMILY SSF53474 4 282 4.27E-34 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 Gene3D G3DSA:3.30.1300.30 39 121 5.4E-9 T 31-10-2018 Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 3.6E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 TIGRFAM TIGR01707 gspI: type II secretion system protein I 9 107 1.2E-36 T 31-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 SUPERFAMILY SSF54523 41 120 2.04E-13 T 31-10-2018 Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 1.8E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4753 34a0f8f21836bb3f008df9bf1400324b 124 Pfam PF02501 Type II secretion system (T2SS), protein I 43 120 6.4E-19 T 31-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 131 155 5.7E-7 T 31-10-2018 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 102 114 5.7E-7 T 31-10-2018 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 42 56 5.7E-7 T 31-10-2018 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 105 111 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 Gene3D G3DSA:3.40.50.150 23 214 1.3E-17 T 31-10-2018 Y89_5106 d6cd8c3abff0c3da862fe80ad85187cc 453 SUPERFAMILY SSF53335 18 178 1.51E-22 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 SUPERFAMILY SSF53383 5 306 1.77E-56 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 1 315 1.4E-107 T 31-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 182 195 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 Pfam PF00155 Aminotransferase class I and II 47 301 1.1E-30 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 Gene3D G3DSA:3.40.640.10 27 230 5.7E-52 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4074 c1a8ae5a388855f88ba7aee41164e74a 324 Gene3D G3DSA:3.90.1150.10 15 293 5.7E-52 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0860 07767958c0b0627be375743971d8d75e 238 SUPERFAMILY SSF51735 4 235 2.92E-70 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0860 07767958c0b0627be375743971d8d75e 238 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 232 1.0E-50 T 31-10-2018 Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 3.5E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 129 3.5E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 3.5E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 Gene3D G3DSA:3.40.50.720 2 235 5.9E-71 T 31-10-2018 Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 1.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0860 07767958c0b0627be375743971d8d75e 238 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 171 0.002 T 31-10-2018 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 Pfam PF02567 Phenazine biosynthesis-like protein 7 274 3.0E-85 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 PIRSF PIRSF016184 1 278 9.7E-82 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 SUPERFAMILY SSF54506 2 277 2.79E-67 T 31-10-2018 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 273 6.1E-56 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 Gene3D G3DSA:3.10.310.10 7 119 1.3E-97 T 31-10-2018 Y89_3420 fef065bbbff6db9570dfbc43d1b3b80b 278 Gene3D G3DSA:3.10.310.10 120 266 1.3E-97 T 31-10-2018 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 Pfam PF02567 Phenazine biosynthesis-like protein 7 274 3.0E-85 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 PIRSF PIRSF016184 1 278 9.7E-82 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 SUPERFAMILY SSF54506 2 277 2.79E-67 T 31-10-2018 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 273 6.1E-56 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 Gene3D G3DSA:3.10.310.10 7 119 1.3E-97 T 31-10-2018 Y89_0807 fef065bbbff6db9570dfbc43d1b3b80b 278 Gene3D G3DSA:3.10.310.10 120 266 1.3E-97 T 31-10-2018 Y89_4334 973f54e7254fb917eaecf302b3ea4a6f 253 SUPERFAMILY SSF52096 4 252 3.78E-68 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_4334 973f54e7254fb917eaecf302b3ea4a6f 253 Gene3D G3DSA:3.90.226.10 2 198 6.1E-53 T 31-10-2018 Y89_4334 973f54e7254fb917eaecf302b3ea4a6f 253 Gene3D G3DSA:1.10.12.10 202 252 3.8E-12 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_4334 973f54e7254fb917eaecf302b3ea4a6f 253 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 252 2.5E-50 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2974 389d93d936b9e09ea5dbe67ca1fc4e84 230 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 20 216 9.5E-122 T 31-10-2018 IPR014063 Arsenate resistance ArsH Y89_2974 389d93d936b9e09ea5dbe67ca1fc4e84 230 SUPERFAMILY SSF52218 21 217 1.3E-62 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_2974 389d93d936b9e09ea5dbe67ca1fc4e84 230 Gene3D G3DSA:3.40.50.360 2 230 7.8E-77 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_2974 389d93d936b9e09ea5dbe67ca1fc4e84 230 Pfam PF03358 NADPH-dependent FMN reductase 24 166 7.5E-27 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 38.095 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 Gene3D G3DSA:3.90.930.12 83 177 1.2E-40 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-34 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-34 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-34 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 Pfam PF00347 Ribosomal protein L6 90 164 8.0E-19 T 31-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 Pfam PF00347 Ribosomal protein L6 12 82 2.5E-16 T 31-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 31-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 7.3E-76 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 SUPERFAMILY SSF56053 83 177 3.17E-36 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 SUPERFAMILY SSF56053 1 82 1.12E-22 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 PIRSF PIRSF002162 1 177 1.5E-46 T 31-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0774 498ad56a7234b8f83975d6c9b437e371 177 Gene3D G3DSA:3.90.930.12 1 82 6.1E-27 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0125 f5c9f15e6896c9d4b9ed553ac4c76c17 211 Pfam PF02630 SCO1/SenC 48 185 3.2E-37 T 31-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0125 f5c9f15e6896c9d4b9ed553ac4c76c17 211 Gene3D G3DSA:3.40.30.10 42 209 3.3E-51 T 31-10-2018 Y89_0125 f5c9f15e6896c9d4b9ed553ac4c76c17 211 SUPERFAMILY SSF52833 50 207 2.43E-49 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2585 adec55f1cb4fd2597c172f78de411824 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 440 514 4.4E-11 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2585 adec55f1cb4fd2597c172f78de411824 543 Gene3D G3DSA:3.30.300.310 428 530 8.6E-20 T 31-10-2018 Y89_2585 adec55f1cb4fd2597c172f78de411824 543 Pfam PF00501 AMP-binding enzyme 22 430 1.1E-84 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2585 adec55f1cb4fd2597c172f78de411824 543 Gene3D G3DSA:3.40.50.12780 12 427 2.0E-96 T 31-10-2018 Y89_2585 adec55f1cb4fd2597c172f78de411824 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2585 adec55f1cb4fd2597c172f78de411824 543 SUPERFAMILY SSF56801 15 526 1.31E-126 T 31-10-2018 Y89_0027 3a033ada26f76592c738ce01a85dfec5 362 SUPERFAMILY SSF102405 85 293 1.53E-45 T 31-10-2018 Y89_0027 3a033ada26f76592c738ce01a85dfec5 362 Gene3D G3DSA:3.40.50.450 1 294 1.3E-102 T 31-10-2018 Y89_0027 3a033ada26f76592c738ce01a85dfec5 362 Pfam PF02481 DNA recombination-mediator protein A 82 283 1.7E-75 T 31-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Y89_0027 3a033ada26f76592c738ce01a85dfec5 362 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 74 291 9.4E-75 T 31-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Gene3D G3DSA:1.20.140.10 230 374 1.7E-41 T 31-10-2018 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Gene3D G3DSA:1.10.540.10 1 119 1.3E-41 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 SUPERFAMILY SSF47203 224 374 3.22E-43 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 333 352 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 373 3.1E-40 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 214 8.7E-21 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 SUPERFAMILY SSF56645 4 237 3.4E-81 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 2.1E-38 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2597 26a4cf2de93f0586fc47f6a7288128a9 374 Gene3D G3DSA:2.40.110.10 121 229 1.1E-35 T 31-10-2018 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 12 381 1.4E-162 T 31-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 Pfam PF01546 Peptidase family M20/M25/M40 69 379 3.9E-41 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 SUPERFAMILY SSF55031 187 296 6.28E-30 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_4191 4c9a0cb594731ae94f7299116154aead 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 143 - T 31-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 Pfam PF07687 Peptidase dimerisation domain 183 289 1.6E-27 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_4191 4c9a0cb594731ae94f7299116154aead 383 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 9 383 51.86 T 31-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 Gene3D G3DSA:3.40.630.10 14 370 3.6E-126 T 31-10-2018 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 SUPERFAMILY SSF53187 9 382 1.15E-64 T 31-10-2018 Y89_4191 4c9a0cb594731ae94f7299116154aead 383 Gene3D G3DSA:3.30.70.360 187 300 3.6E-126 T 31-10-2018 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 464 4.5E-117 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 SUPERFAMILY SSF56954 3 466 6.41E-104 T 31-10-2018 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 Gene3D G3DSA:1.20.1600.10 54 462 2.1E-157 T 31-10-2018 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 Pfam PF02321 Outer membrane efflux protein 64 253 1.4E-19 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 Pfam PF02321 Outer membrane efflux protein 282 462 2.5E-32 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5205 22b116910d1c624063f8ed13374d4b62 479 Gene3D G3DSA:2.20.200.10 100 353 2.1E-157 T 31-10-2018 Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 SMART SM00479 30 215 7.7E-24 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 Pfam PF00929 Exonuclease 32 206 1.6E-32 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 Hamap MF_00157 Ribonuclease T [rnt]. 1 224 112.439 T 31-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 TIGRFAM TIGR01298 RNaseT: ribonuclease T 22 221 1.4E-116 T 31-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 SUPERFAMILY SSF53098 21 219 3.19E-57 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_1499 f35890dc9ed1ff32c385b91bf416066b 224 Gene3D G3DSA:3.30.420.10 19 224 1.3E-57 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 521 4.0E-116 T 31-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 Gene3D G3DSA:1.20.58.220 333 433 2.0E-12 T 31-10-2018 IPR038078 PhoU-like domain superfamily Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF02690 Na+/Pi-cotransporter 13 147 2.0E-35 T 31-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF02690 Na+/Pi-cotransporter 158 258 1.2E-8 T 31-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 308 1.8E-106 T 31-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 Pfam PF01895 PhoU domain 340 422 9.2E-12 T 31-10-2018 IPR026022 PhoU domain Y89_6214 89fb52c9fe86eff00d43cb1a6554156d 582 SUPERFAMILY SSF109755 320 532 3.66E-35 T 31-10-2018 Y89_5088 8ba91031634b7bc73fa2ab65fd733558 526 Gene3D G3DSA:3.40.50.300 219 505 7.2E-73 T 31-10-2018 Y89_5088 8ba91031634b7bc73fa2ab65fd733558 526 Gene3D G3DSA:3.30.450.90 88 215 1.1E-11 T 31-10-2018 Y89_5088 8ba91031634b7bc73fa2ab65fd733558 526 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 321 335 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_5088 8ba91031634b7bc73fa2ab65fd733558 526 SUPERFAMILY SSF52540 104 502 4.14E-55 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5088 8ba91031634b7bc73fa2ab65fd733558 526 Pfam PF00437 Type II/IV secretion system protein 112 385 1.5E-40 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_3975 d0b596493e0fcc14b9ba89e0d758d84f 585 SUPERFAMILY SSF101478 5 365 2.88E-31 T 31-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Y89_3975 d0b596493e0fcc14b9ba89e0d758d84f 585 Gene3D G3DSA:1.10.4080.10 5 375 2.6E-33 T 31-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Y89_3975 d0b596493e0fcc14b9ba89e0d758d84f 585 Pfam PF03747 ADP-ribosylglycohydrolase 16 340 7.0E-25 T 31-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 Y89_1742 470284baadd04a68f0c58095df79ea7a 189 SUPERFAMILY SSF55729 5 172 1.35E-30 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1742 470284baadd04a68f0c58095df79ea7a 189 Pfam PF13302 Acetyltransferase (GNAT) domain 14 146 4.1E-11 T 31-10-2018 IPR000182 GNAT domain Y89_1742 470284baadd04a68f0c58095df79ea7a 189 Gene3D G3DSA:3.40.630.30 1 189 2.4E-55 T 31-10-2018 Y89_5201 662314d1bd8b28ac3786e3cead231f88 237 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5201 662314d1bd8b28ac3786e3cead231f88 237 SUPERFAMILY SSF52540 10 229 7.62E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5201 662314d1bd8b28ac3786e3cead231f88 237 SMART SM00382 39 227 7.5E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5201 662314d1bd8b28ac3786e3cead231f88 237 Pfam PF00005 ABC transporter 30 178 2.2E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5201 662314d1bd8b28ac3786e3cead231f88 237 Gene3D G3DSA:3.40.50.300 8 235 6.6E-65 T 31-10-2018 Y89_4791 7379e4588867aa8623491b3458553358 632 Gene3D G3DSA:3.30.450.20 66 177 3.3E-60 T 31-10-2018 Y89_4791 7379e4588867aa8623491b3458553358 632 Gene3D G3DSA:1.10.287.950 301 632 3.0E-76 T 31-10-2018 Y89_4791 7379e4588867aa8623491b3458553358 632 Pfam PF00672 HAMP domain 302 351 1.1E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4791 7379e4588867aa8623491b3458553358 632 SMART SM00304 301 355 7.7E-16 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4791 7379e4588867aa8623491b3458553358 632 SMART SM00304 390 450 18.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4791 7379e4588867aa8623491b3458553358 632 SUPERFAMILY SSF103190 93 184 1.78E-8 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_4791 7379e4588867aa8623491b3458553358 632 Gene3D G3DSA:3.30.450.20 54 275 3.3E-60 T 31-10-2018 Y89_4791 7379e4588867aa8623491b3458553358 632 Pfam PF02743 Cache domain 37 263 3.2E-34 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_4791 7379e4588867aa8623491b3458553358 632 SUPERFAMILY SSF58104 323 632 3.27E-76 T 31-10-2018 Y89_4791 7379e4588867aa8623491b3458553358 632 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 414 598 1.7E-44 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4791 7379e4588867aa8623491b3458553358 632 SMART SM00283 370 631 2.3E-97 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4955 22d0913c307e340da25028e7b7738e13 286 Gene3D G3DSA:3.40.50.300 36 158 1.8E-6 T 31-10-2018 Y89_4955 22d0913c307e340da25028e7b7738e13 286 Pfam PF03668 P-loop ATPase protein family 1 285 9.3E-95 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 Y89_4955 22d0913c307e340da25028e7b7738e13 286 PIRSF PIRSF005052 1 286 2.0E-114 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 Y89_4955 22d0913c307e340da25028e7b7738e13 286 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 286 40.437 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 Y89_4955 22d0913c307e340da25028e7b7738e13 286 SUPERFAMILY SSF52540 1 154 1.88E-13 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1852 fd030be0155789015f35c794ee7237b8 746 Pfam PF02153 Prephenate dehydrogenase 29 285 2.4E-72 T 31-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Y89_1852 fd030be0155789015f35c794ee7237b8 746 SUPERFAMILY SSF51735 16 183 4.84E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1852 fd030be0155789015f35c794ee7237b8 746 Gene3D G3DSA:1.10.3660.10 191 296 3.2E-35 T 31-10-2018 Y89_1852 fd030be0155789015f35c794ee7237b8 746 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 325 738 4.9E-126 T 31-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y89_1852 fd030be0155789015f35c794ee7237b8 746 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 321 740 33.578 T 31-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y89_1852 fd030be0155789015f35c794ee7237b8 746 ProSitePatterns PS00104 EPSP synthase signature 1. 400 414 - T 31-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y89_1852 fd030be0155789015f35c794ee7237b8 746 ProSitePatterns PS00885 EPSP synthase signature 2. 652 670 - T 31-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Y89_1852 fd030be0155789015f35c794ee7237b8 746 Gene3D G3DSA:3.65.10.10 333 542 5.2E-160 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Y89_1852 fd030be0155789015f35c794ee7237b8 746 SUPERFAMILY SSF48179 189 295 9.98E-35 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1852 fd030be0155789015f35c794ee7237b8 746 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 318 731 1.4E-118 T 31-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Y89_1852 fd030be0155789015f35c794ee7237b8 746 Gene3D G3DSA:3.65.10.10 325 731 5.2E-160 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Y89_1852 fd030be0155789015f35c794ee7237b8 746 Gene3D G3DSA:3.40.50.720 15 190 4.5E-52 T 31-10-2018 Y89_1852 fd030be0155789015f35c794ee7237b8 746 SUPERFAMILY SSF55205 316 738 5.89E-133 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 141 2.1E-66 T 31-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 3.6E-20 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 3.6E-20 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 SUPERFAMILY SSF54523 35 141 4.87E-40 T 31-10-2018 Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 7.7E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 Pfam PF08334 Type II secretion system (T2SS), protein G 31 140 1.8E-44 T 31-10-2018 IPR013545 Type II secretion system protein G Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 5.7E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1918 85cbdf9907f81576ecdf3fd76d9bf6ba 142 Gene3D G3DSA:3.30.700.10 33 140 2.9E-46 T 31-10-2018 Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 Gene3D G3DSA:3.40.50.300 1 322 1.1E-100 T 31-10-2018 Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 SUPERFAMILY SSF52540 5 253 4.71E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 Pfam PF00005 ABC transporter 30 182 1.6E-35 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 298 4.4E-19 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 SMART SM00382 39 231 7.8E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4992 fb729a8cbca4b0b94abf8185567d334b 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 316 8.9E-27 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_4010 9edcd64a8758d0371981273610630b4a 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 114 4.0E-25 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4010 9edcd64a8758d0371981273610630b4a 221 SUPERFAMILY SSF161098 11 205 2.09E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4010 9edcd64a8758d0371981273610630b4a 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 220 1.9E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4010 9edcd64a8758d0371981273610630b4a 221 Gene3D G3DSA:1.10.3720.10 1 220 1.7E-49 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 720 9.2E-177 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 174 1.1E-11 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 Gene3D G3DSA:2.170.130.10 54 182 2.9E-31 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 703 720 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 Gene3D G3DSA:2.40.170.20 183 720 1.4E-233 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 SUPERFAMILY SSF56935 43 720 4.48E-130 T 31-10-2018 Y89_0801 48f15f39227841a06cfcbcc1e97ff620 720 Pfam PF00593 TonB dependent receptor 288 717 5.7E-53 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 Pfam PF01220 Dehydroquinase class II 4 140 1.6E-60 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 Gene3D G3DSA:3.40.50.9100 1 145 3.6E-66 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 SUPERFAMILY SSF52304 3 145 2.75E-63 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 143 8.4E-62 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 PIRSF PIRSF001399 1 146 1.4E-58 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 31-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 147 75.469 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Y89_5516 fc0d747fc3254ba82f4319ee979026f0 147 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 143 3.0E-69 T 31-10-2018 Y89_2834 82ab2dd21f200e1248d36a36c2dd5558 494 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 68 489 2.0E-192 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_2834 82ab2dd21f200e1248d36a36c2dd5558 494 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 489 1.4E-214 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Y89_4011 f507412d903035669dae64a986e2522f 244 Pfam PF00005 ABC transporter 17 165 1.6E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4011 f507412d903035669dae64a986e2522f 244 PIRSF PIRSF039085 1 243 1.3E-102 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_4011 f507412d903035669dae64a986e2522f 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4011 f507412d903035669dae64a986e2522f 244 Gene3D G3DSA:3.40.50.300 1 243 1.0E-74 T 31-10-2018 Y89_4011 f507412d903035669dae64a986e2522f 244 SMART SM00382 26 213 4.8E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4011 f507412d903035669dae64a986e2522f 244 SUPERFAMILY SSF52540 1 226 3.59E-76 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2147 19b616e5f700db85a315d1e41ab27784 305 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 35 165 1.0E-61 T 31-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Y89_2147 19b616e5f700db85a315d1e41ab27784 305 Gene3D G3DSA:1.10.8.300 196 301 4.9E-26 T 31-10-2018 Y89_2147 19b616e5f700db85a315d1e41ab27784 305 Gene3D G3DSA:3.40.50.300 2 194 2.9E-44 T 31-10-2018 Y89_2147 19b616e5f700db85a315d1e41ab27784 305 PIRSF PIRSF002849 1 304 2.1E-119 T 31-10-2018 Y89_2147 19b616e5f700db85a315d1e41ab27784 305 SUPERFAMILY SSF52540 8 282 4.31E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 PIRSF PIRSF000521 29 416 4.4E-28 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 Pfam PF00202 Aminotransferase class-III 28 439 1.3E-121 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 SUPERFAMILY SSF53383 10 442 1.94E-130 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 Gene3D G3DSA:3.90.1150.10 12 435 3.4E-161 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 442 7.5E-175 T 31-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 447 49.782 T 31-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Y89_0443 ade2dee9ecd1103b1e8ef0629e7aa92d 467 Gene3D G3DSA:3.40.640.10 65 342 3.4E-161 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 Gene3D G3DSA:2.160.10.10 67 189 1.1E-38 T 31-10-2018 Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 5 166 1.7E-80 T 31-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 72 108 0.0021 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 152 1.3E-7 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 Gene3D G3DSA:1.10.3130.10 1 66 1.6E-24 T 31-10-2018 Y89_1210 d0aebf0790c82a7c69c0226e1f7faaaf 258 SUPERFAMILY SSF51161 2 172 5.27E-58 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 84 104 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 105 125 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 149 175 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 63 78 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 190 212 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 33 58 1.9E-44 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 169 409 3.5E-12 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 Gene3D G3DSA:2.102.10.10 48 173 9.4E-135 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 Gene3D G3DSA:3.90.380.10 30 462 9.4E-135 T 31-10-2018 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 SUPERFAMILY SSF50022 20 163 6.94E-41 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 SUPERFAMILY SSF55961 166 465 5.22E-61 T 31-10-2018 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 Pfam PF00355 Rieske [2Fe-2S] domain 49 132 9.7E-17 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_2581 69ab42a20c14a9202b6ca42866c66e47 466 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 91 114 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 SUPERFAMILY SSF48024 8 114 1.57E-33 T 31-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 Gene3D G3DSA:1.10.860.10 3 158 1.9E-47 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 Pfam PF03796 DnaB-like helicase C terminal domain 180 437 7.1E-97 T 31-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 SUPERFAMILY SSF52540 178 429 2.56E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 Gene3D G3DSA:3.40.50.300 159 443 8.6E-94 T 31-10-2018 Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 Pfam PF00772 DnaB-like helicase N terminal domain 8 106 4.5E-31 T 31-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Y89_5060 1a90924e6740cfff7d03d1f121af92bb 447 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 8 439 9.4E-151 T 31-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 SUPERFAMILY SSF102114 56 322 9.03E-68 T 31-10-2018 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 Hamap MF_00206 Lipoyl synthase [lipA]. 1 327 153.716 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 43 79 1.9E-7 T 31-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 SMART SM00729 90 299 1.1E-13 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 Pfam PF04055 Radical SAM superfamily 97 256 1.3E-14 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 TIGRFAM TIGR00510 lipA: lipoyl synthase 38 321 8.6E-128 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 PIRSF PIRSF005963 6 327 3.1E-128 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Y89_1028 1f8279358402aabda6a7f9ef61c39fc8 327 Gene3D G3DSA:3.20.20.70 82 307 2.9E-21 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0039 cdb24be0b673d70d9f2777e63ba15443 125 Pfam PF08883 Dopa 4,5-dioxygenase family 12 111 6.8E-34 T 31-10-2018 IPR014980 Dopa 4,5-dioxygenase Y89_0039 cdb24be0b673d70d9f2777e63ba15443 125 Gene3D G3DSA:3.30.70.1240 2 120 8.9E-40 T 31-10-2018 IPR023389 DOPA-like superfamily Y89_0039 cdb24be0b673d70d9f2777e63ba15443 125 PIRSF PIRSF028139 2 115 1.7E-47 T 31-10-2018 IPR014980 Dopa 4,5-dioxygenase Y89_0039 cdb24be0b673d70d9f2777e63ba15443 125 SUPERFAMILY SSF143410 2 113 3.01E-45 T 31-10-2018 IPR023389 DOPA-like superfamily Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 1.7E-12 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 Gene3D G3DSA:3.40.640.10 142 358 4.9E-86 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 Pfam PF00155 Aminotransferase class I and II 107 446 8.4E-39 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 SUPERFAMILY SSF46785 6 86 2.64E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 SUPERFAMILY SSF53383 105 457 1.51E-86 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 SMART SM00345 17 76 1.3E-12 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 Gene3D G3DSA:3.90.1150.10 109 447 4.9E-86 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5972 299529e07541a1b16f96c4b7df8571fc 458 Gene3D G3DSA:1.10.10.10 1 77 1.9E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 Pfam PF00375 Sodium:dicarboxylate symporter family 11 403 2.2E-97 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 297 320 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 3 430 36.487 T 31-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 Gene3D G3DSA:1.10.3860.10 1 416 8.5E-110 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 SUPERFAMILY SSF118215 11 404 1.44E-106 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 3.5E-29 T 31-10-2018 Y89_0130 c62f5d13ac46c2838794e4632c285f74 444 PRINTS PR00173 Glutamate-aspartate symporter signature 45 65 3.5E-29 T 31-10-2018 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 24 138 6.3E-33 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 144 156 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 356 375 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 PIRSF PIRSF016578 13 102 6.7 T 31-10-2018 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 PIRSF PIRSF016578 145 382 5.7E-11 T 31-10-2018 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 SUPERFAMILY SSF56645 20 261 1.05E-82 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 142 237 1.6E-24 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Gene3D G3DSA:1.10.540.10 20 140 1.8E-42 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 SUPERFAMILY SSF47203 249 397 3.54E-44 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Gene3D G3DSA:2.40.110.10 141 253 4.7E-43 T 31-10-2018 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Gene3D G3DSA:1.20.140.10 254 397 1.6E-41 T 31-10-2018 Y89_2133 a536fa46e60e2f4e6b78d7371321d949 406 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 249 395 6.8E-43 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 11 234 3.6E-53 T 31-10-2018 IPR022488 Polyphosphate kinase-2-related Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 269 495 3.7E-99 T 31-10-2018 IPR022488 Polyphosphate kinase-2-related Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 491 1.5E-235 T 31-10-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 Gene3D G3DSA:3.40.50.300 1 236 2.6E-83 T 31-10-2018 Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 SUPERFAMILY SSF52540 302 489 1.45E-24 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 SUPERFAMILY SSF52540 41 215 2.57E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1551 bd94205b8842df66e1d837cf5e28a086 496 Gene3D G3DSA:3.40.50.300 237 495 7.2E-113 T 31-10-2018 Y89_1038 bfe74321ac9721debde9f253abc2a58b 511 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 452 2.8E-97 T 31-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Y89_1038 bfe74321ac9721debde9f253abc2a58b 511 SUPERFAMILY SSF56317 221 484 4.19E-47 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1038 bfe74321ac9721debde9f253abc2a58b 511 Gene3D G3DSA:3.60.110.10 221 474 5.1E-16 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1038 bfe74321ac9721debde9f253abc2a58b 511 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 8 489 22.918 T 31-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Y89_1038 bfe74321ac9721debde9f253abc2a58b 511 Pfam PF00795 Carbon-nitrogen hydrolase 230 467 7.7E-29 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_4641 7e808965b3a231a92c4ccd4754b917e5 175 Pfam PF11358 Protein of unknown function (DUF3158) 11 165 1.2E-71 T 31-10-2018 IPR021502 Protein of unknown function DUF3158 Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 Gene3D G3DSA:3.30.420.40 4 216 9.6E-91 T 31-10-2018 Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 216 7.2E-62 T 31-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 Gene3D G3DSA:3.30.420.40 95 185 9.6E-91 T 31-10-2018 Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 Pfam PF00814 Glycoprotease family 32 150 3.3E-28 T 31-10-2018 IPR000905 Gcp-like domain Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 SUPERFAMILY SSF53067 4 106 3.11E-28 T 31-10-2018 Y89_1341 5d5865f6b28312c3c1d39b69c573ade0 226 SUPERFAMILY SSF53067 109 214 3.37E-25 T 31-10-2018 Y89_5690 b874d267af89e5edda9bd4a94fb9e2f9 215 SUPERFAMILY SSF55068 10 213 1.31E-79 T 31-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y89_5690 b874d267af89e5edda9bd4a94fb9e2f9 215 Pfam PF01625 Peptide methionine sulfoxide reductase 52 204 4.8E-64 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y89_5690 b874d267af89e5edda9bd4a94fb9e2f9 215 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 51 204 3.8E-65 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y89_5690 b874d267af89e5edda9bd4a94fb9e2f9 215 Gene3D G3DSA:3.30.1060.10 9 215 1.7E-90 T 31-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y89_5690 b874d267af89e5edda9bd4a94fb9e2f9 215 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 49 210 36.809 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Y89_5149 ebcd81972c5620a0078d42e7ef960932 242 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 240 1.9E-58 T 31-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y89_5149 ebcd81972c5620a0078d42e7ef960932 242 SUPERFAMILY SSF64438 3 241 3.85E-84 T 31-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y89_5149 ebcd81972c5620a0078d42e7ef960932 242 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 239 2.3E-76 T 31-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y89_5149 ebcd81972c5620a0078d42e7ef960932 242 Gene3D G3DSA:3.60.140.10 1 242 1.9E-90 T 31-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Y89_2923 3ac67f33145661bc9414a466e546b05b 186 Gene3D G3DSA:1.20.1290.10 13 182 1.3E-40 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_2923 3ac67f33145661bc9414a466e546b05b 186 SUPERFAMILY SSF69118 1 183 1.14E-46 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_2923 3ac67f33145661bc9414a466e546b05b 186 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 108 3.2E-10 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_2923 3ac67f33145661bc9414a466e546b05b 186 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 63 105 7.5E-9 T 31-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 SMART SM00487 154 361 4.8E-52 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 Pfam PF00271 Helicase conserved C-terminal domain 369 478 9.8E-30 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 SUPERFAMILY SSF52540 210 494 1.97E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 Gene3D G3DSA:3.40.50.300 352 517 2.5E-47 T 31-10-2018 Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 SMART SM00490 397 478 2.0E-32 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 290 298 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 Gene3D G3DSA:3.40.50.300 80 349 5.2E-74 T 31-10-2018 Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 Pfam PF00270 DEAD/DEAH box helicase 159 334 2.9E-48 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1163 e51f6305176faaae4ec566a840ad3c33 523 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 134 516 53.172 T 31-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.30.470.20 101 309 1.8E-71 T 31-10-2018 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Pfam PF07478 D-ala D-ala ligase C-terminus 120 311 2.4E-56 T 31-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.40.50.20 8 100 8.2E-30 T 31-10-2018 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 PIRSF PIRSF039102 59 318 1.4E-82 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 PIRSF PIRSF039102 17 65 9.3E-8 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 20 313 4.8E-110 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 SUPERFAMILY SSF56059 113 312 5.48E-59 T 31-10-2018 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Pfam PF01820 D-ala D-ala ligase N-terminus 20 102 3.1E-18 T 31-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 257 285 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 79 90 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Gene3D G3DSA:3.30.1490.20 127 192 1.8E-71 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 19 315 35.054 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Y89_4899 87a7f4bab32128f75d0cb30f439bda41 319 SUPERFAMILY SSF52440 20 112 5.08E-30 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_3985 a6b57f432b4a69438810daecea28b443 280 Gene3D G3DSA:2.60.120.1440 61 195 2.6E-26 T 31-10-2018 Y89_3985 a6b57f432b4a69438810daecea28b443 280 Pfam PF04773 FecR protein 68 160 1.4E-19 T 31-10-2018 IPR006860 FecR protein Y89_3985 a6b57f432b4a69438810daecea28b443 280 PIRSF PIRSF018266 6 277 1.0E-74 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_3985 a6b57f432b4a69438810daecea28b443 280 Pfam PF16344 Domain of unknown function (DUF4974) 173 266 9.4E-8 T 31-10-2018 IPR032508 Protein FecR, C-terminal Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 SUPERFAMILY SSF50475 13 214 2.16E-52 T 31-10-2018 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 45 122 1.3E-17 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 26 214 6.3E-45 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 180 214 1.4E-9 T 31-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Gene3D G3DSA:2.30.110.10 1 214 1.2E-68 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 PIRSF PIRSF000190 2 214 1.0E-60 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_3419 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 184 197 - T 31-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 SUPERFAMILY SSF50475 13 214 2.16E-52 T 31-10-2018 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 45 122 1.3E-17 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 26 214 6.3E-45 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 180 214 1.4E-9 T 31-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 Gene3D G3DSA:2.30.110.10 1 214 1.2E-68 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 PIRSF PIRSF000190 2 214 1.0E-60 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_0806 a5019dcbad4cb5e1a2ab1f1bb5bfb1a8 214 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 184 197 - T 31-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Y89_4018 7d4e4d03551c49aee9adc85c7862a314 207 Gene3D G3DSA:3.40.50.150 3 207 4.3E-39 T 31-10-2018 Y89_4018 7d4e4d03551c49aee9adc85c7862a314 207 SUPERFAMILY SSF53335 16 203 2.09E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4018 7d4e4d03551c49aee9adc85c7862a314 207 Pfam PF13489 Methyltransferase domain 32 179 1.4E-14 T 31-10-2018 Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 Pfam PF11741 AMIN domain 32 129 5.1E-18 T 31-10-2018 IPR021731 AMIN domain Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 Gene3D G3DSA:3.40.630.40 147 384 4.0E-72 T 31-10-2018 Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 157 375 1.3E-45 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 SUPERFAMILY SSF53187 155 379 7.85E-52 T 31-10-2018 Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 SMART SM00646 217 375 1.3E-66 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y89_6278 6bac42d01ca3e8cd3ef3d47ff3f3db59 397 Gene3D G3DSA:2.60.40.3500 17 132 2.3E-25 T 31-10-2018 Y89_2322 d60cfd11c881b31ff5053dc5c8e4fca4 212 PIRSF PIRSF009320 1 210 1.4E-50 T 31-10-2018 Y89_2322 d60cfd11c881b31ff5053dc5c8e4fca4 212 SUPERFAMILY SSF52540 1 210 5.85E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2322 d60cfd11c881b31ff5053dc5c8e4fca4 212 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 184 1.2E-15 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_2322 d60cfd11c881b31ff5053dc5c8e4fca4 212 Gene3D G3DSA:3.40.50.300 1 209 8.8E-50 T 31-10-2018 Y89_4260 c4b0d30c1c1d36937c9b75b5a442b966 474 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 105 3.6E-17 T 31-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Y89_4260 c4b0d30c1c1d36937c9b75b5a442b966 474 Pfam PF07196 Flagellin hook IN motif 125 182 3.5E-9 T 31-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Y89_4260 c4b0d30c1c1d36937c9b75b5a442b966 474 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 229 452 2.3E-60 T 31-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 Y89_4143 8d2eebd93e12cbdb8cb807ce009b242a 232 SUPERFAMILY SSF51182 1 231 1.1E-74 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4143 8d2eebd93e12cbdb8cb807ce009b242a 232 Gene3D G3DSA:2.60.120.10 9 231 1.1E-82 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4143 8d2eebd93e12cbdb8cb807ce009b242a 232 Pfam PF02678 Pirin 12 118 2.4E-37 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y89_4143 8d2eebd93e12cbdb8cb807ce009b242a 232 PIRSF PIRSF006232 1 231 3.1E-56 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y89_4143 8d2eebd93e12cbdb8cb807ce009b242a 232 Gene3D G3DSA:2.60.120.10 11 134 1.1E-82 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0234 e20316fed29854c35b65c882cef2e0f9 260 SUPERFAMILY SSF100950 2 245 2.64E-72 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_0234 e20316fed29854c35b65c882cef2e0f9 260 SMART SM00882 8 217 3.7E-41 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_0234 e20316fed29854c35b65c882cef2e0f9 260 Gene3D G3DSA:3.40.1080.10 1 249 3.5E-82 T 31-10-2018 Y89_0234 e20316fed29854c35b65c882cef2e0f9 260 Pfam PF01144 Coenzyme A transferase 8 217 3.2E-48 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 151 675 1.8E-108 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Gene3D G3DSA:3.30.365.10 20 278 9.6E-67 T 31-10-2018 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Gene3D G3DSA:3.90.1170.50 37 136 9.6E-67 T 31-10-2018 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 135 1.5E-16 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Gene3D G3DSA:3.30.365.10 360 731 2.5E-102 T 31-10-2018 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Gene3D G3DSA:3.30.365.10 137 336 9.6E-67 T 31-10-2018 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 SUPERFAMILY SSF56003 136 733 1.28E-158 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 Gene3D G3DSA:3.30.365.10 433 590 2.5E-102 T 31-10-2018 Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 SUPERFAMILY SSF54665 7 147 8.5E-33 T 31-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Y89_3388 e30cd3e160204ea347e293fe8477e66e 734 SMART SM01008 22 136 2.3E-35 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.7E-70 T 31-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 Pfam PF01765 Ribosome recycling factor 22 183 5.1E-62 T 31-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.534 T 31-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 Gene3D G3DSA:3.30.1360.40 31 105 6.3E-67 T 31-10-2018 Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 SUPERFAMILY SSF55194 1 185 4.71E-70 T 31-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 Y89_1373 e5dce18c9f5be27837de0c012fcb3caa 185 Gene3D G3DSA:1.10.132.20 13 182 6.3E-67 T 31-10-2018 Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 PIRSF PIRSF001589 1 589 1.2E-204 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 Gene3D G3DSA:3.60.20.10 3 185 1.8E-56 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 SUPERFAMILY SSF52402 234 562 9.04E-72 T 31-10-2018 Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 519 2.6E-118 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 SUPERFAMILY SSF56235 1 224 2.74E-60 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 586 0.0 T 31-10-2018 IPR017535 Asparagine synthase family amidotransferase Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 Pfam PF13537 Glutamine amidotransferase domain 47 166 3.1E-43 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Y89_1547 a07aa27091b66e6bc2cc2096c1af2a99 589 Pfam PF00733 Asparagine synthase 246 584 1.6E-80 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y89_6267 3cdb7f519f46d2de945a2382f6694058 133 SUPERFAMILY SSF160631 2 132 2.49E-42 T 31-10-2018 Y89_6267 3cdb7f519f46d2de945a2382f6694058 133 Gene3D G3DSA:3.40.1580.10 1 133 7.5E-40 T 31-10-2018 IPR037883 Knr4/Smi1-like domain superfamily Y89_6267 3cdb7f519f46d2de945a2382f6694058 133 Pfam PF14567 SMI1-KNR4 cell-wall 2 131 1.3E-42 T 31-10-2018 Y89_6267 3cdb7f519f46d2de945a2382f6694058 133 SMART SM00860 21 128 0.0026 T 31-10-2018 IPR018958 Knr4/Smi1-like domain Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 1.2E-98 T 31-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 Gene3D G3DSA:3.40.1080.10 2 210 3.1E-104 T 31-10-2018 Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 31-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 Pfam PF01144 Coenzyme A transferase 6 198 5.9E-41 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 SUPERFAMILY SSF100950 3 209 2.65E-74 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_2516 e3d2827a1ac7713724c2c3fe2db1eadb 210 SMART SM00882 6 202 1.0E-79 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_0842 4c48675083c45997b88467d27e099ae4 547 Gene3D G3DSA:3.40.50.970 337 537 2.0E-54 T 31-10-2018 Y89_0842 4c48675083c45997b88467d27e099ae4 547 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_0842 4c48675083c45997b88467d27e099ae4 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 2.8E-53 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_0842 4c48675083c45997b88467d27e099ae4 547 SUPERFAMILY SSF52518 3 179 2.54E-48 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0842 4c48675083c45997b88467d27e099ae4 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 9.9E-39 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_0842 4c48675083c45997b88467d27e099ae4 547 Gene3D G3DSA:3.40.50.1220 181 330 8.7E-35 T 31-10-2018 Y89_0842 4c48675083c45997b88467d27e099ae4 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 319 8.1E-30 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_0842 4c48675083c45997b88467d27e099ae4 547 Gene3D G3DSA:3.40.50.970 1 174 3.2E-60 T 31-10-2018 Y89_0842 4c48675083c45997b88467d27e099ae4 547 SUPERFAMILY SSF52518 356 534 3.32E-58 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0842 4c48675083c45997b88467d27e099ae4 547 SUPERFAMILY SSF52467 154 335 1.8E-38 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_2494 995ac44206a1b29a90e51641156d93b0 319 Gene3D G3DSA:3.40.190.10 112 211 2.6E-100 T 31-10-2018 Y89_2494 995ac44206a1b29a90e51641156d93b0 319 Gene3D G3DSA:3.40.190.10 31 307 2.6E-100 T 31-10-2018 Y89_2494 995ac44206a1b29a90e51641156d93b0 319 Gene3D G3DSA:1.10.8.450 243 276 2.6E-100 T 31-10-2018 Y89_2494 995ac44206a1b29a90e51641156d93b0 319 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 31 310 8.1E-63 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_2494 995ac44206a1b29a90e51641156d93b0 319 SMART SM00062 30 248 3.8E-23 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2494 995ac44206a1b29a90e51641156d93b0 319 Pfam PF09084 NMT1/THI5 like 57 252 1.0E-15 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_2494 995ac44206a1b29a90e51641156d93b0 319 SUPERFAMILY SSF53850 29 258 1.07E-46 T 31-10-2018 Y89_2523 f00526b1c2ee42bc98f87e018f8103da 140 SUPERFAMILY SSF46955 5 120 4.4E-25 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_2523 f00526b1c2ee42bc98f87e018f8103da 140 Gene3D G3DSA:1.10.1660.10 4 138 4.6E-26 T 31-10-2018 Y89_2523 f00526b1c2ee42bc98f87e018f8103da 140 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2523 f00526b1c2ee42bc98f87e018f8103da 140 Pfam PF13411 MerR HTH family regulatory protein 5 70 4.8E-17 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2523 f00526b1c2ee42bc98f87e018f8103da 140 SMART SM00422 5 72 1.1E-18 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF00563 EAL domain 440 674 6.5E-72 T 31-10-2018 IPR001633 EAL domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SMART SM00267 252 423 7.3E-68 T 31-10-2018 IPR000160 GGDEF domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 418 2.7E-51 T 31-10-2018 IPR000160 GGDEF domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 261 421 5.1E-47 T 31-10-2018 IPR000160 GGDEF domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Gene3D G3DSA:3.20.20.450 437 684 4.2E-101 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SUPERFAMILY SSF141868 439 682 3.66E-89 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SUPERFAMILY SSF55073 268 425 3.37E-54 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 109 2.3E-21 T 31-10-2018 IPR005330 MHYT domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 245 8.7E-15 T 31-10-2018 IPR005330 MHYT domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 171 1.3E-15 T 31-10-2018 IPR005330 MHYT domain Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 Gene3D G3DSA:3.30.70.270 258 436 1.9E-65 T 31-10-2018 Y89_3606 d4df81a2eb7e05bd97dc70ab9a41af2c 685 SMART SM00052 433 679 5.4E-120 T 31-10-2018 IPR001633 EAL domain Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Hamap MF_01899 Ribonuclease D [rnd]. 6 372 43.314 T 31-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Gene3D G3DSA:3.30.420.10 5 193 7.7E-61 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 SMART SM00341 212 292 6.8E-12 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 SUPERFAMILY SSF47819 197 303 3.49E-29 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 SUPERFAMILY SSF53098 5 212 1.6E-60 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 SMART SM00474 6 174 1.8E-35 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Gene3D G3DSA:1.10.150.80 304 374 2.2E-5 T 31-10-2018 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Pfam PF01612 3'-5' exonuclease 6 173 2.0E-38 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 SUPERFAMILY SSF47819 297 372 9.91E-16 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 TIGRFAM TIGR01388 rnd: ribonuclease D 8 373 5.9E-157 T 31-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Gene3D G3DSA:1.10.150.80 197 296 1.1E-25 T 31-10-2018 Y89_4056 44c4504da8d966dadc1fa6917e5e6c38 374 Pfam PF00570 HRDC domain 215 282 3.3E-17 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Y89_1188 7599df1aca4aa5c44379813f0a705b1c 325 Gene3D G3DSA:3.40.50.2300 49 295 1.2E-96 T 31-10-2018 Y89_1188 7599df1aca4aa5c44379813f0a705b1c 325 SUPERFAMILY SSF53822 37 286 1.73E-24 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_1188 7599df1aca4aa5c44379813f0a705b1c 325 Gene3D G3DSA:3.40.50.2300 146 317 1.2E-96 T 31-10-2018 Y89_1188 7599df1aca4aa5c44379813f0a705b1c 325 Pfam PF04392 ABC transporter substrate binding protein 32 323 1.5E-123 T 31-10-2018 IPR007487 ABC transporter, substrate-binding protein Y89_3713 f838280137efbaf6ce302086531cdf15 286 Gene3D G3DSA:3.40.50.1820 4 276 1.5E-58 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3713 f838280137efbaf6ce302086531cdf15 286 Pfam PF00561 alpha/beta hydrolase fold 28 137 6.6E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3713 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.6E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3713 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 1.6E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3713 f838280137efbaf6ce302086531cdf15 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.6E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3713 f838280137efbaf6ce302086531cdf15 286 SUPERFAMILY SSF53474 5 285 1.76E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 SUPERFAMILY SSF81296 411 524 6.16E-31 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 PIRSF PIRSF006281 2 525 3.4E-244 T 31-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 18 523 62.242 T 31-10-2018 IPR023704 Glucan biosynthesis protein G Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 SUPERFAMILY SSF74650 36 407 3.04E-167 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 Gene3D G3DSA:2.60.40.10 411 525 3.7E-47 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 Gene3D G3DSA:2.70.98.10 35 410 9.2E-172 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y89_5750 ff22612d4bd49794c32ac4153dd0fb65 525 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 36 521 3.0E-200 T 31-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 Y89_4565 ca47bc87d4c06538b48983ffaa4360bd 494 Gene3D G3DSA:3.30.1330.120 298 437 4.2E-178 T 31-10-2018 Y89_4565 ca47bc87d4c06538b48983ffaa4360bd 494 SUPERFAMILY SSF103378 13 492 1.26E-152 T 31-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Y89_4565 ca47bc87d4c06538b48983ffaa4360bd 494 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 14 494 8.2E-280 T 31-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 Y89_4565 ca47bc87d4c06538b48983ffaa4360bd 494 Pfam PF03972 MmgE/PrpD family 18 477 2.3E-152 T 31-10-2018 IPR005656 MmgE/PrpD GO:0016829 Y89_4565 ca47bc87d4c06538b48983ffaa4360bd 494 Gene3D G3DSA:1.10.4100.10 23 472 4.2E-178 T 31-10-2018 Y89_1706 aeafb7e01619daa7e13730ed304d3c69 664 Pfam PF04632 Fusaric acid resistance protein family 16 657 7.0E-194 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_4985 a1850f55ea833a93d3e8d7c38be761f1 236 Gene3D G3DSA:3.30.110.170 38 226 8.0E-19 T 31-10-2018 Y89_4985 a1850f55ea833a93d3e8d7c38be761f1 236 Pfam PF04402 Protein of unknown function (DUF541) 32 227 1.6E-26 T 31-10-2018 IPR007497 Protein of unknown function DUF541 Y89_4985 a1850f55ea833a93d3e8d7c38be761f1 236 Gene3D G3DSA:3.30.70.2970 43 143 8.0E-19 T 31-10-2018 Y89_3232 3be92fbd9b5bc7717b9e283ef43cdc24 736 Pfam PF13550 Putative phage tail protein 213 358 7.0E-9 T 31-10-2018 IPR032876 Tip attachment protein J Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 SMART SM00490 263 344 1.6E-32 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 SMART SM00487 20 227 8.3E-62 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 Pfam PF00270 DEAD/DEAH box helicase 25 199 3.8E-45 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 Gene3D G3DSA:3.40.50.300 1 215 1.7E-75 T 31-10-2018 Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 SUPERFAMILY SSF52540 80 365 3.4E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 566 50.612 T 31-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 SUPERFAMILY SSF52540 24 102 2.92E-5 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 Gene3D G3DSA:3.40.50.300 219 437 1.5E-49 T 31-10-2018 Y89_0451 6cc3bc48405ad49ca5ad597404c15bae 639 Pfam PF00271 Helicase conserved C-terminal domain 241 344 2.7E-26 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_3619 851c11852941481cda6b3bbf332e0203 276 Gene3D G3DSA:1.20.1270.190 207 276 1.2E-31 T 31-10-2018 Y89_3619 851c11852941481cda6b3bbf332e0203 276 Pfam PF16806 Antiactivator protein ExsD 42 274 6.4E-101 T 31-10-2018 IPR031835 Antiactivator protein ExsD Y89_3619 851c11852941481cda6b3bbf332e0203 276 Gene3D G3DSA:1.10.8.520 37 108 2.6E-38 T 31-10-2018 Y89_3619 851c11852941481cda6b3bbf332e0203 276 Gene3D G3DSA:1.10.287.1060 138 206 7.0E-48 T 31-10-2018 Y89_3478 fd60b28a9dfa77b868f24e32cba3ddb4 80 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 4.8E-29 T 31-10-2018 IPR010696 Protein of unknown function DUF1272 Y89_4067 e3db1305893d3bb29be2a3af1d79d04c 186 Gene3D G3DSA:1.10.357.10 4 181 1.6E-34 T 31-10-2018 Y89_4067 e3db1305893d3bb29be2a3af1d79d04c 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.6E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4067 e3db1305893d3bb29be2a3af1d79d04c 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 7.4E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4067 e3db1305893d3bb29be2a3af1d79d04c 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 7.4E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4067 e3db1305893d3bb29be2a3af1d79d04c 186 SUPERFAMILY SSF46689 2 81 5.13E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1272 632c38e9465270637e17d0abc54f6191 184 Gene3D G3DSA:2.20.70.10 1 35 3.5E-18 T 31-10-2018 Y89_1272 632c38e9465270637e17d0abc54f6191 184 Gene3D G3DSA:3.90.79.10 36 180 3.0E-37 T 31-10-2018 Y89_1272 632c38e9465270637e17d0abc54f6191 184 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_1272 632c38e9465270637e17d0abc54f6191 184 Pfam PF00293 NUDIX domain 44 141 1.4E-14 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_1272 632c38e9465270637e17d0abc54f6191 184 Pfam PF14803 Nudix N-terminal 2 35 3.1E-17 T 31-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 Y89_1272 632c38e9465270637e17d0abc54f6191 184 SUPERFAMILY SSF55811 2 165 3.25E-41 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 SUPERFAMILY SSF51569 2 289 3.77E-83 T 31-10-2018 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 1.4E-54 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 8.6E-15 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 8.6E-15 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 8.6E-15 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 8.6E-15 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 SMART SM01130 2 290 2.1E-89 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 Gene3D G3DSA:3.20.20.70 1 292 4.6E-81 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0834 d2473ec38b2f23afeebe5cb23c0cfe9a 303 PIRSF PIRSF001365 1 299 3.4E-80 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 SUPERFAMILY SSF81891 120 401 2.88E-51 T 31-10-2018 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 SUPERFAMILY SSF81301 1 119 1.42E-29 T 31-10-2018 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Pfam PF01743 Poly A polymerase head domain 4 122 3.8E-18 T 31-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 41.247 T 31-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 55.229 T 31-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Pfam PF01966 HD domain 231 320 7.4E-8 T 31-10-2018 IPR006674 HD domain Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 PIRSF PIRSF000813 1 408 2.3E-201 T 31-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Gene3D G3DSA:1.10.3090.10 122 408 6.9E-43 T 31-10-2018 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 9.3E-13 T 31-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Y89_0656 e26dcbcfd106f1ea538b091b9abf1a39 410 Gene3D G3DSA:3.30.460.10 1 121 4.0E-30 T 31-10-2018 Y89_4509 ea42e9ed152c85159977cd4462573883 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 304 5.0E-64 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_4509 ea42e9ed152c85159977cd4462573883 320 Gene3D G3DSA:3.40.50.1100 51 148 9.3E-75 T 31-10-2018 Y89_4509 ea42e9ed152c85159977cd4462573883 320 SUPERFAMILY SSF53686 8 312 1.83E-73 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_4509 ea42e9ed152c85159977cd4462573883 320 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 56 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y89_4509 ea42e9ed152c85159977cd4462573883 320 PIRSF PIRSF006278 2 229 1.1E-8 T 31-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y89_4509 ea42e9ed152c85159977cd4462573883 320 PIRSF PIRSF006278 256 308 38.0 T 31-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Y89_4509 ea42e9ed152c85159977cd4462573883 320 Gene3D G3DSA:3.40.50.1100 18 308 9.3E-75 T 31-10-2018 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 Pfam PF04185 Phosphoesterase family 48 422 2.5E-133 T 31-10-2018 IPR007312 Phosphoesterase GO:0016788 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 686 1.1E-300 T 31-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 Pfam PF05506 Domain of unknown function (DUF756) 590 672 6.7E-19 T 31-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 Pfam PF05506 Domain of unknown function (DUF756) 490 577 4.7E-20 T 31-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 Gene3D G3DSA:3.40.720.10 265 469 2.6E-53 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_1690 4f635d430da80f8fea2df737fcac923a 692 Gene3D G3DSA:3.40.720.10 38 203 3.5E-28 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 31-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 309 1.7E-134 T 31-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 Gene3D G3DSA:3.20.20.70 1 234 8.8E-69 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 311 47.471 T 31-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 SUPERFAMILY SSF51395 1 305 5.13E-69 T 31-10-2018 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 PIRSF PIRSF006621 1 310 3.6E-70 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 Pfam PF01207 Dihydrouridine synthase (Dus) 1 291 1.6E-80 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Y89_2234 fffd69ed56661e277cd225d6881b9e09 312 Gene3D G3DSA:1.20.120.1460 238 312 3.7E-16 T 31-10-2018 Y89_3138 83a3f08cdb8c4ec1d4dd8c86da12df0d 172 Pfam PF02464 Competence-damaged protein 10 159 6.4E-36 T 31-10-2018 IPR008136 CinA, C-terminal Y89_3138 83a3f08cdb8c4ec1d4dd8c86da12df0d 172 SUPERFAMILY SSF142433 5 163 9.15E-40 T 31-10-2018 IPR036653 CinA-like, C-terminal Y89_3138 83a3f08cdb8c4ec1d4dd8c86da12df0d 172 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 159 1.8E-24 T 31-10-2018 IPR008136 CinA, C-terminal Y89_3138 83a3f08cdb8c4ec1d4dd8c86da12df0d 172 Gene3D G3DSA:3.90.950.20 3 166 8.2E-42 T 31-10-2018 IPR036653 CinA-like, C-terminal Y89_4915 8aa28c0c74b1e3e9646da0cb6288190b 192 SMART SM00749 53 116 0.019 T 31-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y89_4915 8aa28c0c74b1e3e9646da0cb6288190b 192 SMART SM00749 130 191 0.093 T 31-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Y89_4915 8aa28c0c74b1e3e9646da0cb6288190b 192 Pfam PF04972 BON domain 125 190 1.9E-17 T 31-10-2018 IPR007055 BON domain Y89_4915 8aa28c0c74b1e3e9646da0cb6288190b 192 Pfam PF04972 BON domain 46 115 8.3E-12 T 31-10-2018 IPR007055 BON domain Y89_2725 0f8f04acaa73c2c26ac8629b80720935 256 SUPERFAMILY SSF52833 96 253 8.25E-38 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2725 0f8f04acaa73c2c26ac8629b80720935 256 Gene3D G3DSA:3.40.30.10 112 255 6.1E-41 T 31-10-2018 Y89_2725 0f8f04acaa73c2c26ac8629b80720935 256 Gene3D G3DSA:3.10.450.70 28 97 1.1E-28 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Y89_2725 0f8f04acaa73c2c26ac8629b80720935 256 Pfam PF13098 Thioredoxin-like domain 123 253 5.7E-16 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_2725 0f8f04acaa73c2c26ac8629b80720935 256 SUPERFAMILY SSF54423 27 86 3.92E-21 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Y89_6378 34b077dd29d4d16e9997b2f3a3aec8cc 419 Gene3D G3DSA:2.40.10.10 226 406 9.8E-19 T 31-10-2018 Y89_6378 34b077dd29d4d16e9997b2f3a3aec8cc 419 SUPERFAMILY SSF50494 227 400 3.23E-13 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_6378 34b077dd29d4d16e9997b2f3a3aec8cc 419 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 246 251 - T 31-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 Y89_6378 34b077dd29d4d16e9997b2f3a3aec8cc 419 Gene3D G3DSA:2.40.10.10 296 404 9.8E-19 T 31-10-2018 Y89_5108 34b077dd29d4d16e9997b2f3a3aec8cc 419 Gene3D G3DSA:2.40.10.10 226 406 9.8E-19 T 31-10-2018 Y89_5108 34b077dd29d4d16e9997b2f3a3aec8cc 419 SUPERFAMILY SSF50494 227 400 3.23E-13 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_5108 34b077dd29d4d16e9997b2f3a3aec8cc 419 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 246 251 - T 31-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 Y89_5108 34b077dd29d4d16e9997b2f3a3aec8cc 419 Gene3D G3DSA:2.40.10.10 296 404 9.8E-19 T 31-10-2018 Y89_3282 15807e2a392212a5d6efae2a132b5f06 456 PIRSF PIRSF006060 1 454 2.7E-78 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3282 15807e2a392212a5d6efae2a132b5f06 456 Pfam PF00324 Amino acid permease 22 380 3.6E-38 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_3282 15807e2a392212a5d6efae2a132b5f06 456 Gene3D G3DSA:1.20.1740.10 12 446 2.6E-72 T 31-10-2018 Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 SUPERFAMILY SSF111369 41 184 2.09E-21 T 31-10-2018 Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 Gene3D G3DSA:2.40.30.170 43 266 2.8E-36 T 31-10-2018 Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 226 1.1E-16 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 213 7.9E-34 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 Gene3D G3DSA:2.40.50.100 44 188 2.8E-36 T 31-10-2018 Y89_4122 5fe74f8e95e1769be4a12dfe7e900ca4 302 Gene3D G3DSA:1.10.287.470 78 153 2.8E-36 T 31-10-2018 Y89_3337 c67cf0b011300bf1aa9638258f84ceb7 304 Pfam PF12706 Beta-lactamase superfamily domain 50 271 7.1E-49 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3337 c67cf0b011300bf1aa9638258f84ceb7 304 Gene3D G3DSA:3.60.15.10 1 304 1.2E-92 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3337 c67cf0b011300bf1aa9638258f84ceb7 304 SUPERFAMILY SSF56281 1 304 6.38E-68 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3337 c67cf0b011300bf1aa9638258f84ceb7 304 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 304 177.943 T 31-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B Y89_3337 c67cf0b011300bf1aa9638258f84ceb7 304 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 304 3.0E-146 T 31-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B Y89_1851 bcba96d6314f2904fb984349b45478bb 369 Gene3D G3DSA:3.90.1150.10 26 360 8.6E-118 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1851 bcba96d6314f2904fb984349b45478bb 369 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 226 235 - T 31-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Y89_1851 bcba96d6314f2904fb984349b45478bb 369 Gene3D G3DSA:3.40.640.10 50 274 8.6E-118 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1851 bcba96d6314f2904fb984349b45478bb 369 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 364 1.3E-115 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y89_1851 bcba96d6314f2904fb984349b45478bb 369 Pfam PF00155 Aminotransferase class I and II 38 362 2.3E-50 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_1851 bcba96d6314f2904fb984349b45478bb 369 SUPERFAMILY SSF53383 17 366 5.5E-83 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1851 bcba96d6314f2904fb984349b45478bb 369 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 7 366 62.59 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y89_1469 c48fa0712195a8bef5bec5551a1082cf 137 Gene3D G3DSA:1.10.3730.20 40 127 3.4E-9 T 31-10-2018 Y89_1469 c48fa0712195a8bef5bec5551a1082cf 137 SUPERFAMILY SSF103481 37 122 1.31E-11 T 31-10-2018 Y89_1469 c48fa0712195a8bef5bec5551a1082cf 137 Pfam PF00893 Small Multidrug Resistance protein 44 112 1.2E-6 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_1469 c48fa0712195a8bef5bec5551a1082cf 137 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 5 125 20.855 T 31-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF Y89_3510 2a12620b4e485cdfce6d1016767d0cc7 451 Pfam PF13520 Amino acid permease 13 410 1.0E-54 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3510 2a12620b4e485cdfce6d1016767d0cc7 451 PIRSF PIRSF006060 2 450 3.8E-73 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3510 2a12620b4e485cdfce6d1016767d0cc7 451 Gene3D G3DSA:1.20.1740.10 6 446 2.9E-89 T 31-10-2018 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 178 370 1.8E-64 T 31-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF52402 181 374 2.14E-38 T 31-10-2018 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 SMART SM00981 77 167 5.1E-24 T 31-10-2018 IPR004114 THUMP domain GO:0003723 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 386 483 7.1E-36 T 31-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.40.50.620 177 387 6.1E-49 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF52821 397 482 5.63E-8 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 484 206.371 T 31-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Pfam PF02926 THUMP domain 29 166 1.6E-21 T 31-10-2018 IPR004114 THUMP domain GO:0003723 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 SUPERFAMILY SSF143437 1 175 3.84E-48 T 31-10-2018 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.30.2130.30 1 176 6.7E-36 T 31-10-2018 Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 Gene3D G3DSA:3.40.250.10 394 483 1.5E-6 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5789 cedf7a59f054c94731e0f52886c92b46 484 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 371 2.7E-106 T 31-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 Y89_1980 1872aedffbdbd57ef7d785f8fa30bbae 402 Gene3D G3DSA:1.10.3430.10 1 402 1.2E-94 T 31-10-2018 IPR029020 Ammonium/urea transporter Y89_1980 1872aedffbdbd57ef7d785f8fa30bbae 402 Pfam PF00909 Ammonium Transporter Family 19 395 9.1E-86 T 31-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Y89_1980 1872aedffbdbd57ef7d785f8fa30bbae 402 SUPERFAMILY SSF111352 13 380 1.96E-91 T 31-10-2018 Y89_1980 1872aedffbdbd57ef7d785f8fa30bbae 402 ProSitePatterns PS01219 Ammonium transporters signature. 163 188 - T 31-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Y89_2548 a4fb2fc4c3b52c6157e41bc4a3d38b5b 832 SUPERFAMILY SSF82866 209 399 4.71E-25 T 31-10-2018 Y89_2548 a4fb2fc4c3b52c6157e41bc4a3d38b5b 832 Gene3D G3DSA:1.20.1640.10 627 808 1.6E-11 T 31-10-2018 Y89_2548 a4fb2fc4c3b52c6157e41bc4a3d38b5b 832 SUPERFAMILY SSF82866 647 798 2.88E-27 T 31-10-2018 Y89_2548 a4fb2fc4c3b52c6157e41bc4a3d38b5b 832 Pfam PF03176 MMPL family 495 800 1.2E-10 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y89_2548 a4fb2fc4c3b52c6157e41bc4a3d38b5b 832 Pfam PF03176 MMPL family 222 434 5.0E-5 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 SUPERFAMILY SSF50621 245 386 1.51E-30 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 Gene3D G3DSA:3.20.20.10 33 273 3.9E-96 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 Gene3D G3DSA:2.40.37.10 22 380 3.9E-96 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 31-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 271 5.0E-55 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 52 79 1.1E-18 T 31-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 96 120 1.1E-18 T 31-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 126 148 1.1E-18 T 31-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 26 50 1.1E-18 T 31-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01182 Ornithine decarboxylase signature 329 339 1.1E-18 T 31-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 272 365 9.4E-15 T 31-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 3.8E-18 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 3.8E-18 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 3.8E-18 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 261 280 3.8E-18 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 SUPERFAMILY SSF51419 25 273 4.86E-66 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5005 d2296bf5c2e39fae8ca731c0a1abb27a 387 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 54 72 - T 31-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y89_1875 a6d4da626a4f5f83e9fde6707c5b7139 344 SUPERFAMILY SSF53756 12 334 1.88E-38 T 31-10-2018 Y89_1875 a6d4da626a4f5f83e9fde6707c5b7139 344 Pfam PF00534 Glycosyl transferases group 1 157 315 9.5E-15 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_1875 a6d4da626a4f5f83e9fde6707c5b7139 344 Gene3D G3DSA:3.40.50.2000 142 318 4.9E-24 T 31-10-2018 Y89_1875 a6d4da626a4f5f83e9fde6707c5b7139 344 Gene3D G3DSA:3.40.50.2000 2 141 3.9E-5 T 31-10-2018 Y89_3321 fde449868abc0f2894e1a21cdef1b356 474 Pfam PF02667 Short chain fatty acid transporter 14 458 5.6E-83 T 31-10-2018 IPR006160 Short chain fatty acid transporter AtoE Y89_0377 abae769a25213d5531f66c93c6fd0fa3 292 Gene3D G3DSA:1.10.3210.10 12 279 9.2E-64 T 31-10-2018 Y89_0377 abae769a25213d5531f66c93c6fd0fa3 292 SUPERFAMILY SSF109604 13 281 3.32E-65 T 31-10-2018 Y89_0377 abae769a25213d5531f66c93c6fd0fa3 292 Pfam PF08668 HDOD domain 20 213 2.3E-54 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00091 391 457 2.6 T 31-10-2018 IPR000014 PAS domain Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00091 268 334 2.8E-9 T 31-10-2018 IPR000014 PAS domain Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00091 158 220 49.0 T 31-10-2018 IPR000014 PAS domain Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 642 751 1.7E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Pfam PF08447 PAS fold 291 376 2.2E-15 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Pfam PF00512 His Kinase A (phospho-acceptor) domain 527 597 6.9E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 731 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 698 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 712 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Gene3D G3DSA:3.30.450.20 400 518 5.0E-10 T 31-10-2018 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SUPERFAMILY SSF55785 382 502 1.93E-10 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00387 641 753 3.6E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Gene3D G3DSA:3.30.565.10 599 754 2.5E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00388 526 599 5.9E-5 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Gene3D G3DSA:1.10.287.130 531 597 1.9E-18 T 31-10-2018 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 268 389 3.1E-22 T 31-10-2018 IPR000014 PAS domain Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00086 340 383 4.8E-7 T 31-10-2018 IPR001610 PAC motif Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SMART SM00086 462 504 21.0 T 31-10-2018 IPR001610 PAC motif Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 Gene3D G3DSA:3.30.450.20 267 399 1.8E-30 T 31-10-2018 Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SUPERFAMILY SSF55874 590 751 7.07E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SUPERFAMILY SSF55785 273 386 9.99E-27 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0825 97e71b8bced167ff4e862920f00cfadc 758 SUPERFAMILY SSF47384 522 597 5.89E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Gene3D G3DSA:3.30.420.40 1 191 8.1E-69 T 31-10-2018 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 SUPERFAMILY SSF53067 5 192 5.83E-65 T 31-10-2018 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Hamap MF_00020 Acetate kinase [ackA]. 1 394 169.52 T 31-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PIRSF PIRSF000722 2 394 2.7E-131 T 31-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Gene3D G3DSA:3.30.420.40 195 394 8.6E-70 T 31-10-2018 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 31-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 6 17 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 374 386 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 200 221 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 170 183 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 319 335 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 PRINTS PR00471 Acetate kinase family signature 297 310 6.4E-43 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 TIGRFAM TIGR00016 ackA: acetate kinase 3 392 5.2E-133 T 31-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 SUPERFAMILY SSF53067 153 393 1.11E-82 T 31-10-2018 Y89_4524 35ab8e1725d3fcd7aa1fa4b3eb442af8 394 Pfam PF00871 Acetokinase family 6 386 4.1E-133 T 31-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 SUPERFAMILY SSF55811 4 154 1.76E-29 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 Pfam PF00293 NUDIX domain 7 146 8.9E-26 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.33 T 31-10-2018 IPR022927 RNA pyrophosphohydrolase RppH Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 Gene3D G3DSA:3.90.79.10 1 157 3.0E-43 T 31-10-2018 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.4E-6 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_0357 49f0f22881f30d9fd8e06a20036e09ad 159 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.4E-6 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 SMART SM00644 7 158 1.3E-46 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 SUPERFAMILY SSF55846 10 174 1.57E-43 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 159 1.1E-24 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 Gene3D G3DSA:3.40.80.10 17 172 7.1E-51 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 Gene3D G3DSA:1.10.101.10 173 255 2.1E-31 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Y89_4550 c7a2460d47afe18c42cd3b3407ad97a9 255 SUPERFAMILY SSF47090 182 253 2.35E-18 T 31-10-2018 IPR036365 PGBD-like superfamily Y89_2887 9cf0646508a2cf7ecb739061a512cf94 190 Pfam PF05069 Phage virion morphogenesis family 11 182 9.0E-33 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_2887 9cf0646508a2cf7ecb739061a512cf94 190 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 11 119 2.4E-13 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_1053 4bc307864e50248cdf0bfeea69a41f77 188 SUPERFAMILY SSF103642 165 182 2.78E-5 T 31-10-2018 Y89_1053 4bc307864e50248cdf0bfeea69a41f77 188 Pfam PF02810 SEC-C motif 166 181 1.1E-5 T 31-10-2018 IPR004027 SEC-C motif Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 Gene3D G3DSA:1.20.1730.10 23 501 7.9E-93 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 1.0E-123 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 Pfam PF00474 Sodium:solute symporter family 35 437 1.8E-138 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_4575 94bb58bfd2fa74e9c9e5276eefe5be87 506 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 491 1.3E-227 T 31-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 248 8.4E-68 T 31-10-2018 Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 Gene3D G3DSA:3.40.50.720 2 253 1.3E-73 T 31-10-2018 Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 SUPERFAMILY SSF51735 9 248 3.4E-75 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.5E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1913 b35bb61307e6eb8212283f7ed2cb6e98 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2804 4066905cca0e3a67633b3450e9b04c69 284 Pfam PF03781 Sulfatase-modifying factor enzyme 1 37 282 3.9E-69 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Y89_2804 4066905cca0e3a67633b3450e9b04c69 284 SUPERFAMILY SSF56436 36 283 3.06E-65 T 31-10-2018 IPR016187 C-type lectin fold Y89_2804 4066905cca0e3a67633b3450e9b04c69 284 Gene3D G3DSA:3.90.1580.10 25 284 3.0E-60 T 31-10-2018 Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 112 26.804 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 Pfam PF02033 Ribosome-binding factor A 7 112 2.1E-32 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 99 1.0E-47 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 SUPERFAMILY SSF89919 2 106 1.96E-35 T 31-10-2018 IPR023799 Ribosome-binding factor A domain superfamily Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 Gene3D G3DSA:3.30.300.20 1 107 1.8E-38 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 ProSitePatterns PS01319 Ribosome-binding factor A signature. 78 99 - T 31-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 Y89_5356 2ef43db2e362b766dd90fd21275fe6bd 130 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 3.7E-34 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Y89_5828 57d8d976c36c524fc070f445c7bfc50e 231 Gene3D G3DSA:1.10.3720.10 4 227 4.7E-52 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5828 57d8d976c36c524fc070f445c7bfc50e 231 SUPERFAMILY SSF161098 11 208 1.74E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5828 57d8d976c36c524fc070f445c7bfc50e 231 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 117 1.7E-17 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_5828 57d8d976c36c524fc070f445c7bfc50e 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 221 1.1E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1277 6751d73bd78ec4c07e8635c7c1203e29 249 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 58 229 4.3E-16 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain Y89_1277 6751d73bd78ec4c07e8635c7c1203e29 249 Gene3D G3DSA:3.40.50.1110 47 239 1.4E-21 T 31-10-2018 IPR036514 SGNH hydrolase superfamily Y89_1277 6751d73bd78ec4c07e8635c7c1203e29 249 SUPERFAMILY SSF52266 51 239 7.47E-31 T 31-10-2018 Y89_6188 0d04ee63c126f86d467940ac83648f3f 381 Gene3D G3DSA:3.40.50.2000 189 349 3.6E-35 T 31-10-2018 Y89_6188 0d04ee63c126f86d467940ac83648f3f 381 Pfam PF00534 Glycosyl transferases group 1 189 345 2.1E-32 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_6188 0d04ee63c126f86d467940ac83648f3f 381 SUPERFAMILY SSF53756 1 368 2.39E-74 T 31-10-2018 Y89_6188 0d04ee63c126f86d467940ac83648f3f 381 Gene3D G3DSA:3.40.50.2000 1 188 4.2E-24 T 31-10-2018 Y89_6188 0d04ee63c126f86d467940ac83648f3f 381 Pfam PF13439 Glycosyltransferase Family 4 15 173 2.2E-15 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 Pfam PF01551 Peptidase family M23 339 435 1.4E-32 T 31-10-2018 IPR016047 Peptidase M23 Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 Gene3D G3DSA:3.10.450.350 213 455 3.5E-95 T 31-10-2018 Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 Gene3D G3DSA:2.70.70.10 310 441 3.5E-95 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 Gene3D G3DSA:3.10.450.350 103 196 3.5E-16 T 31-10-2018 Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 SUPERFAMILY SSF51261 188 436 2.93E-73 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_0740 d41d6b4d3c69c8d5b42e787295898537 479 Pfam PF04225 Opacity-associated protein A LysM-like domain 113 193 5.6E-11 T 31-10-2018 IPR007340 Opacity-associated protein A Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 1.8E-66 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:1.10.486.10 377 545 1.8E-120 T 31-10-2018 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 SUPERFAMILY SSF52540 2 640 3.25E-165 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 4 266 8.0E-93 T 31-10-2018 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 3 668 0.0 T 31-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 668 40.391 T 31-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:1.10.10.160 106 183 8.0E-93 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Gene3D G3DSA:3.40.50.300 274 633 1.8E-120 T 31-10-2018 Y89_6034 af5b5411664ddd82fa5b69b245fd17ca 669 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 265 3.6E-73 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y89_3943 17b78ca539eb1c543ab02c597404475a 252 SUPERFAMILY SSF81301 40 118 1.69E-11 T 31-10-2018 Y89_3943 17b78ca539eb1c543ab02c597404475a 252 Pfam PF01909 Nucleotidyltransferase domain 40 78 2.1E-5 T 31-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Y89_3943 17b78ca539eb1c543ab02c597404475a 252 Gene3D G3DSA:3.30.460.10 17 113 2.2E-7 T 31-10-2018 Y89_1171 08b92b5e48adcb7ae4ab51cc77799b4a 229 Gene3D G3DSA:2.160.10.10 36 197 3.0E-45 T 31-10-2018 Y89_1171 08b92b5e48adcb7ae4ab51cc77799b4a 229 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 124 152 - T 31-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y89_1171 08b92b5e48adcb7ae4ab51cc77799b4a 229 SUPERFAMILY SSF51161 35 192 2.91E-37 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1171 08b92b5e48adcb7ae4ab51cc77799b4a 229 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 150 5.6E-8 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_5234 5776f03348da8906995ab59e4f0b417c 2073 SUPERFAMILY SSF51126 63 336 1.79E-43 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_5234 5776f03348da8906995ab59e4f0b417c 2073 Gene3D G3DSA:2.160.20.10 42 423 3.2E-86 T 31-10-2018 IPR012334 Pectin lyase fold Y89_5234 5776f03348da8906995ab59e4f0b417c 2073 Pfam PF05860 haemagglutination activity domain 42 152 2.3E-22 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_5234 5776f03348da8906995ab59e4f0b417c 2073 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 74 149 6.4E-19 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_5234 5776f03348da8906995ab59e4f0b417c 2073 SMART SM00912 40 152 1.2E-35 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 SUPERFAMILY SSF52016 419 600 1.1E-57 T 31-10-2018 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 SUPERFAMILY SSF143975 1 418 6.93E-148 T 31-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 Pfam PF00920 Dehydratase family 66 597 8.4E-162 T 31-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 601 58.942 T 31-10-2018 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 601 0.0 T 31-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 Y89_1822 9acbb454b733fdb308d38f10c0140a4a 608 Gene3D G3DSA:3.50.30.80 419 568 1.2E-50 T 31-10-2018 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 SUPERFAMILY SSF53187 13 348 1.37E-44 T 31-10-2018 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 Gene3D G3DSA:3.40.630.10 19 346 2.3E-83 T 31-10-2018 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 Gene3D G3DSA:2.40.30.40 81 175 2.3E-83 T 31-10-2018 IPR023367 Peptidase M42, domain 2 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 Pfam PF05343 M42 glutamyl aminopeptidase 53 341 8.9E-74 T 31-10-2018 IPR008007 Peptidase M42 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 SUPERFAMILY SSF101821 78 190 1.1E-24 T 31-10-2018 Y89_1545 0678df4490dc2a64903bf5d86c525e69 398 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 8 349 1.8E-171 T 31-10-2018 IPR017537 Peptidase M42, hydrolase Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 SUPERFAMILY SSF48498 97 201 2.25E-8 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 Gene3D G3DSA:1.10.10.60 2 66 9.8E-18 T 31-10-2018 Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 SUPERFAMILY SSF46689 11 89 2.19E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 Gene3D G3DSA:1.10.357.10 67 201 1.6E-13 T 31-10-2018 Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 68 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 1.2E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 1.2E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4035 0d76f4527097a54f6f5bb51e313c81d3 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 9.1E-17 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 Pfam PF00743 Flavin-binding monooxygenase-like 82 217 9.4E-9 T 31-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 Gene3D G3DSA:3.50.50.60 158 250 5.8E-13 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 Gene3D G3DSA:3.50.50.60 2 157 2.8E-38 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 SUPERFAMILY SSF51905 4 386 5.94E-51 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 Gene3D G3DSA:3.50.50.60 313 435 2.9E-6 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4145 eecd4b065dbfd2e52b40178ea9a202fe 499 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 57 4.0E-6 T 31-10-2018 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Gene3D G3DSA:3.90.1150.10 218 383 7.9E-44 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 262 336 1.1E-15 T 31-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 SUPERFAMILY SSF55904 359 502 1.14E-23 T 31-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 364 493 1.4E-33 T 31-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 31 142 2.6E-8 T 31-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 SUPERFAMILY SSF53383 241 356 1.2E-12 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Gene3D G3DSA:3.40.50.2300 16 147 5.2E-7 T 31-10-2018 Y89_4004 1a7bdd899f5d4f229cb98f0314c718f1 521 Gene3D G3DSA:3.90.100.10 384 504 2.3E-31 T 31-10-2018 Y89_3874 53e8f53dd529e9aca0d201e25260d6cb 135 Pfam PF10975 Protein of unknown function (DUF2802) 64 130 4.3E-23 T 31-10-2018 IPR021244 Protein of unknown function DUF2802 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 SUPERFAMILY SSF63411 2 204 9.98E-35 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 Gene3D G3DSA:3.30.830.10 1 214 3.1E-50 T 31-10-2018 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 Pfam PF05193 Peptidase M16 inactive domain 170 327 7.4E-12 T 31-10-2018 IPR007863 Peptidase M16, C-terminal Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 Gene3D G3DSA:3.30.830.10 584 750 6.5E-20 T 31-10-2018 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 TIGRFAM TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF 1 674 5.0E-272 T 31-10-2018 IPR011844 Coenzyme PQQ biosynthesis protein PqqF GO:0004222|GO:0006508|GO:0008270|GO:0018189 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 SUPERFAMILY SSF63411 577 754 4.96E-19 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 Pfam PF00675 Insulinase (Peptidase family M16) 10 130 5.8E-29 T 31-10-2018 IPR011765 Peptidase M16, N-terminal Y89_3351 fc9d5a5ed57db7e71f106b3f8fbfa3ad 761 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 28 51 - T 31-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 Gene3D G3DSA:3.30.360.10 128 235 1.3E-108 T 31-10-2018 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 PIRSF PIRSF000161 1 268 2.7E-88 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 SUPERFAMILY SSF51735 1 267 3.23E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 SUPERFAMILY SSF55347 128 237 1.79E-37 T 31-10-2018 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 129 265 6.9E-44 T 31-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 Gene3D G3DSA:3.40.50.720 4 265 1.3E-108 T 31-10-2018 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 126 1.5E-39 T 31-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 3 266 1.4E-100 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 266 36.014 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5371 f92f02fcc6aba2eb9c5ed8694addf071 268 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 151 168 - T 31-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_6096 ee0e499ff39fe65004aca2b261247af0 296 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 18 293 3.3E-106 T 31-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Y89_6096 ee0e499ff39fe65004aca2b261247af0 296 Gene3D G3DSA:1.10.357.140 30 188 2.4E-41 T 31-10-2018 Y89_6096 ee0e499ff39fe65004aca2b261247af0 296 Pfam PF01040 UbiA prenyltransferase family 34 278 6.9E-66 T 31-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y89_6096 ee0e499ff39fe65004aca2b261247af0 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 31-10-2018 IPR030470 UbiA prenyltransferase conserved site Y89_6096 ee0e499ff39fe65004aca2b261247af0 296 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 11 294 30.676 T 31-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 PIRSF PIRSF029570 5 948 0.0 T 31-10-2018 IPR016925 Uncharacterised conserved protein UCP029570 Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 Gene3D G3DSA:3.20.20.70 53 313 7.6E-23 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 253 263 1.8E-6 T 31-10-2018 IPR016062 Hypothetical protein TM1410-related Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 275 287 1.8E-6 T 31-10-2018 IPR016062 Hypothetical protein TM1410-related Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 147 166 1.8E-6 T 31-10-2018 IPR016062 Hypothetical protein TM1410-related Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 PRINTS PR01545 Thermotoga maritima hypothetical protein TM1410 signature 90 109 1.8E-6 T 31-10-2018 IPR016062 Hypothetical protein TM1410-related Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 SUPERFAMILY SSF51445 52 305 2.53E-36 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 Pfam PF03537 Glycoside-hydrolase family GH114 72 292 6.8E-17 T 31-10-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain Y89_1955 beddaf6fb08e1d45f5327782c36aa496 948 SUPERFAMILY SSF88713 570 787 1.75E-6 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_3093 4b29df042ef268a9ef286d2282dda3ef 458 SMART SM01236 131 228 1.8E-27 T 31-10-2018 Y89_3093 4b29df042ef268a9ef286d2282dda3ef 458 Gene3D G3DSA:1.20.910.10 94 270 7.6E-12 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_3093 4b29df042ef268a9ef286d2282dda3ef 458 Pfam PF14518 Iron-containing redox enzyme 100 264 5.3E-33 T 31-10-2018 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 Gene3D G3DSA:3.40.50.300 2 285 9.8E-83 T 31-10-2018 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 Pfam PF00005 ABC transporter 340 473 1.1E-22 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 Pfam PF12848 ABC transporter 230 304 6.5E-11 T 31-10-2018 IPR032781 ABC-transporter extension domain Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 Gene3D G3DSA:3.40.50.300 286 554 7.4E-75 T 31-10-2018 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 SUPERFAMILY SSF52540 302 530 3.04E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 SMART SM00382 348 522 2.9E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 SMART SM00382 31 240 8.2E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 SUPERFAMILY SSF52540 13 244 2.8E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 7.5E-296 T 31-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 Y89_5202 b9c6ade0fbf9b98c7fdb313004ebe133 554 Pfam PF00005 ABC transporter 22 191 3.9E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 Pfam PF00266 Aminotransferase class-V 6 349 3.5E-49 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 Gene3D G3DSA:3.90.1150.10 258 361 8.1E-43 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 Gene3D G3DSA:3.40.640.10 18 257 5.4E-93 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 SUPERFAMILY SSF53383 4 358 8.03E-117 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 PIRSF PIRSF000525 1 361 7.2E-150 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 6 359 3.8E-165 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y89_1849 339fc0f2d436ae42bce905dc96c34005 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 3 360 51.669 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Y89_4617 45c07028364557af0cc253a27c91904d 214 Gene3D G3DSA:1.10.287.70 103 209 1.1E-14 T 31-10-2018 Y89_4617 45c07028364557af0cc253a27c91904d 214 Pfam PF07885 Ion channel 126 207 3.0E-12 T 31-10-2018 IPR013099 Potassium channel domain Y89_4617 45c07028364557af0cc253a27c91904d 214 SUPERFAMILY SSF81324 117 209 2.88E-16 T 31-10-2018 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 354 377 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 150 172 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 266 286 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 31 47 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 120 141 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 319 339 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 93 117 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 178 198 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 PRINTS PR01035 Tetracycline resistance protein signature 294 315 1.1E-54 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 Pfam PF07690 Major Facilitator Superfamily 25 328 2.6E-37 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 Gene3D G3DSA:1.20.1250.20 14 414 2.2E-66 T 31-10-2018 Y89_4221 2459d029a8845f8b92bacb907db191d3 422 SUPERFAMILY SSF103473 19 416 7.46E-62 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4198 cfe5084716fe77040069c0b90e114ec7 415 PIRSF PIRSF000355 64 415 2.8E-142 T 31-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4198 cfe5084716fe77040069c0b90e114ec7 415 Pfam PF00268 Ribonucleotide reductase, small chain 95 382 1.1E-85 T 31-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_4198 cfe5084716fe77040069c0b90e114ec7 415 SUPERFAMILY SSF47240 56 388 5.73E-98 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_4198 cfe5084716fe77040069c0b90e114ec7 415 Gene3D G3DSA:1.10.620.20 73 408 3.4E-111 T 31-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Y89_4987 2ca778218bdc81d0c952cde18e41dae2 483 Pfam PF03573 outer membrane porin, OprD family 61 481 5.3E-123 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4987 2ca778218bdc81d0c952cde18e41dae2 483 Gene3D G3DSA:2.40.160.10 25 483 2.4E-185 T 31-10-2018 IPR023614 Porin domain superfamily Y89_1772 45cdffb5fbee0231639d6d5d24c3f66f 312 PIRSF PIRSF026649 1 306 1.5E-105 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y89_1772 45cdffb5fbee0231639d6d5d24c3f66f 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 306 50.163 T 31-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 Y89_1772 45cdffb5fbee0231639d6d5d24c3f66f 312 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4 306 7.8E-135 T 31-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 Y89_1772 45cdffb5fbee0231639d6d5d24c3f66f 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 297 3.4E-87 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Y89_5922 35f23c56408fa72385de775323446a4f 325 SMART SM00829 10 322 1.5E-57 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_5922 35f23c56408fa72385de775323446a4f 325 SUPERFAMILY SSF51735 111 274 3.18E-52 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5922 35f23c56408fa72385de775323446a4f 325 Pfam PF00107 Zinc-binding dehydrogenase 151 272 4.9E-32 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_5922 35f23c56408fa72385de775323446a4f 325 SUPERFAMILY SSF50129 1 140 1.22E-40 T 31-10-2018 IPR011032 GroES-like superfamily Y89_5922 35f23c56408fa72385de775323446a4f 325 Gene3D G3DSA:3.90.180.10 14 318 4.2E-106 T 31-10-2018 Y89_5922 35f23c56408fa72385de775323446a4f 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 1.7E-10 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_5922 35f23c56408fa72385de775323446a4f 325 Gene3D G3DSA:3.40.50.720 123 267 4.2E-106 T 31-10-2018 Y89_0109 ea2579e5e0b3df6225aad655a87fb9b2 345 SUPERFAMILY SSF53901 7 197 4.9E-9 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0109 ea2579e5e0b3df6225aad655a87fb9b2 345 SUPERFAMILY SSF53901 182 317 6.38E-10 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0109 ea2579e5e0b3df6225aad655a87fb9b2 345 Gene3D G3DSA:3.40.47.10 94 333 2.4E-10 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1583 686132a2d4f642599bf3406e19226620 468 Gene3D G3DSA:3.30.9.10 125 354 1.2E-59 T 31-10-2018 Y89_1583 686132a2d4f642599bf3406e19226620 468 Gene3D G3DSA:3.50.50.60 31 394 1.2E-59 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1583 686132a2d4f642599bf3406e19226620 468 Pfam PF01266 FAD dependent oxidoreductase 31 393 7.4E-48 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1583 686132a2d4f642599bf3406e19226620 468 SUPERFAMILY SSF51905 3 307 1.6E-41 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 SUPERFAMILY SSF46894 835 905 4.76E-20 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 Gene3D G3DSA:3.40.50.300 20 189 1.5E-10 T 31-10-2018 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 859 875 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 875 887 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 845 859 1.1E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 SUPERFAMILY SSF52540 36 249 2.13E-9 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 Gene3D G3DSA:1.25.40.10 462 819 1.1E-43 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 Gene3D G3DSA:1.10.10.10 832 906 2.8E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 ProSitePatterns PS00622 LuxR-type HTH domain signature. 859 886 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 SUPERFAMILY SSF48452 466 810 9.1E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 SMART SM00421 842 899 4.5E-22 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 Pfam PF00196 Bacterial regulatory proteins, luxR family 844 898 9.9E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1102 9a362fa6be9bbadf817acb069418ed28 906 SUPERFAMILY SSF48452 472 584 2.82E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2151 c0c672958b9ccf28e91fa3723fcfca0c 265 Pfam PF13622 Thioesterase-like superfamily 20 263 3.1E-52 T 31-10-2018 Y89_2151 c0c672958b9ccf28e91fa3723fcfca0c 265 SUPERFAMILY SSF54637 1 108 1.23E-25 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_2151 c0c672958b9ccf28e91fa3723fcfca0c 265 SUPERFAMILY SSF54637 123 263 2.4E-27 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_2151 c0c672958b9ccf28e91fa3723fcfca0c 265 Gene3D G3DSA:3.10.129.90 4 264 2.9E-71 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.40.50.11180 25 335 7.5E-123 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SMART SM00490 826 910 1.2E-15 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SMART SM00487 600 790 3.1E-35 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 150 1081 0.0 T 31-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF52540 782 990 7.92E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.90.1150.50 1005 1149 1.3E-40 T 31-10-2018 IPR037235 TRCF-like, C-terminal domain Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SMART SM00982 1008 1108 2.3E-50 T 31-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF143517 994 1146 1.02E-43 T 31-10-2018 IPR037235 TRCF-like, C-terminal domain Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.40.50.300 478 989 8.0E-233 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.40.50.11140 357 453 1.1E-25 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF52540 353 466 1.89E-29 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF52540 12 342 1.35E-107 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF141259 471 548 5.36E-23 T 31-10-2018 IPR036101 CarD-like/TRCF domain superfamily Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Pfam PF00270 DEAD/DEAH box helicase 605 765 9.6E-19 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SUPERFAMILY SSF52540 524 783 1.36E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:2.30.30.840 483 541 8.0E-233 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.40.50.300 542 781 8.0E-233 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 SMART SM01058 479 576 1.2E-48 T 31-10-2018 IPR003711 CarD-like/TRCF domain Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Pfam PF00271 Helicase conserved C-terminal domain 806 909 5.2E-16 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Pfam PF03461 TRCF domain 1009 1100 6.3E-27 T 31-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Gene3D G3DSA:3.30.2060.10 130 215 7.5E-123 T 31-10-2018 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 36 1106 28.049 T 31-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Y89_2017 57d1fae5719b31db308f94d9d18bf6ce 1150 Pfam PF02559 CarD-like/TRCF domain 480 575 2.6E-24 T 31-10-2018 IPR003711 CarD-like/TRCF domain Y89_4008 8a34d8624a78e4ae114fa0bff19a31ff 302 Gene3D G3DSA:3.40.190.10 28 274 2.3E-100 T 31-10-2018 Y89_4008 8a34d8624a78e4ae114fa0bff19a31ff 302 SMART SM00062 38 271 9.3E-57 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_4008 8a34d8624a78e4ae114fa0bff19a31ff 302 Gene3D G3DSA:3.40.190.10 133 228 2.3E-100 T 31-10-2018 Y89_4008 8a34d8624a78e4ae114fa0bff19a31ff 302 SUPERFAMILY SSF53850 8 272 6.73E-64 T 31-10-2018 Y89_4008 8a34d8624a78e4ae114fa0bff19a31ff 302 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 269 7.0E-51 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2854 939552d9d7c20231885794bbed22ba07 411 SUPERFAMILY SSF56645 33 234 3.01E-44 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2854 939552d9d7c20231885794bbed22ba07 411 PIRSF PIRSF016578 19 401 2.1E-26 T 31-10-2018 Y89_2854 939552d9d7c20231885794bbed22ba07 411 SUPERFAMILY SSF47203 249 409 1.34E-20 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2854 939552d9d7c20231885794bbed22ba07 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 226 7.6E-10 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2854 939552d9d7c20231885794bbed22ba07 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 132 7.7E-8 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2854 939552d9d7c20231885794bbed22ba07 411 Gene3D G3DSA:1.10.540.10 27 133 1.2E-19 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2854 939552d9d7c20231885794bbed22ba07 411 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 20 411 6.8E-177 T 31-10-2018 IPR023922 Sulphate-starvation-induced SfnB Y89_2854 939552d9d7c20231885794bbed22ba07 411 Gene3D G3DSA:1.20.140.10 235 409 7.5E-54 T 31-10-2018 Y89_2854 939552d9d7c20231885794bbed22ba07 411 Gene3D G3DSA:2.40.110.10 135 234 3.1E-27 T 31-10-2018 Y89_2854 939552d9d7c20231885794bbed22ba07 411 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 252 386 2.2E-21 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 SUPERFAMILY SSF51735 2 186 5.26E-51 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 4.5E-58 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Gene3D G3DSA:1.10.1040.50 190 494 2.5E-102 T 31-10-2018 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 SUPERFAMILY SSF48179 413 497 1.45E-20 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 SUPERFAMILY SSF48179 186 290 1.45E-31 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 414 497 5.0E-22 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 9.3E-32 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Gene3D G3DSA:3.30.750.190 291 411 2.5E-102 T 31-10-2018 Y89_3707 cf4659c83c9b0d82591b8c23b4bbe28d 509 Gene3D G3DSA:3.40.50.720 2 189 6.5E-64 T 31-10-2018 Y89_3756 f1b01b91b467335af2713e99b46a5f3e 202 Gene3D G3DSA:3.30.530.20 23 202 9.4E-62 T 31-10-2018 IPR023393 START-like domain superfamily Y89_3756 f1b01b91b467335af2713e99b46a5f3e 202 Pfam PF01852 START domain 23 198 3.6E-15 T 31-10-2018 IPR002913 START domain GO:0008289 Y89_3756 f1b01b91b467335af2713e99b46a5f3e 202 SMART SM00234 6 201 0.0094 T 31-10-2018 IPR002913 START domain GO:0008289 Y89_3756 f1b01b91b467335af2713e99b46a5f3e 202 SUPERFAMILY SSF55961 22 201 4.05E-39 T 31-10-2018 Y89_3756 f1b01b91b467335af2713e99b46a5f3e 202 PIRSF PIRSF039033 1 202 2.2E-81 T 31-10-2018 IPR028347 START domain-containing protein Y89_1516 8f715af309c4507f620776a45dc0cb45 214 Pfam PF04205 FMN-binding domain 105 194 1.7E-17 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_1516 8f715af309c4507f620776a45dc0cb45 214 PIRSF PIRSF006091 1 210 3.7E-75 T 31-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y89_1516 8f715af309c4507f620776a45dc0cb45 214 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 14 198 2.6E-67 T 31-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y89_1516 8f715af309c4507f620776a45dc0cb45 214 SMART SM00900 105 197 1.4E-36 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_1516 8f715af309c4507f620776a45dc0cb45 214 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 6 199 27.966 T 31-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 3.7E-5 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 293 3.7E-5 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.7E-5 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 6.7E-9 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 6.7E-9 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.7E-9 T 31-10-2018 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 313 3.7E-38 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 SUPERFAMILY SSF51905 2 331 1.4E-29 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2396 5dbd0ab13a7589d68e988b20b004ff5f 401 Gene3D G3DSA:3.50.50.100 1 373 1.7E-72 T 31-10-2018 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 Gene3D G3DSA:3.30.63.10 34 93 1.2E-70 T 31-10-2018 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 SUPERFAMILY SSF52540 3 186 1.63E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 Pfam PF00625 Guanylate kinase 4 182 3.6E-54 T 31-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 Gene3D G3DSA:3.40.50.300 7 180 1.2E-70 T 31-10-2018 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 36.599 T 31-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.0E-74 T 31-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 31-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Y89_6074 7baf81fa66da5d662e0023e48a6072b6 203 SMART SM00072 2 184 9.5E-62 T 31-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 SUPERFAMILY SSF52833 1 85 9.49E-25 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 Gene3D G3DSA:3.40.30.10 1 83 4.8E-33 T 31-10-2018 Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 SUPERFAMILY SSF47616 80 201 1.81E-31 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 Gene3D G3DSA:1.20.1050.10 84 200 8.0E-44 T 31-10-2018 Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.9E-15 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_2216 3da66da9afd078b74ab996f33d91ce2f 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 119 195 1.9E-7 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:3.90.700.10 249 352 5.4E-161 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF51905 6 427 3.97E-74 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:4.10.80.40 550 590 2.7E-25 T 31-10-2018 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Pfam PF00890 FAD binding domain 10 407 4.4E-118 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 590 6.2E-41 T 31-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 10 590 2.5E-258 T 31-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 8 590 0.0 T 31-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:3.50.50.60 10 418 5.4E-161 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 44 53 - T 31-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 PIRSF PIRSF000171 1 580 2.6E-48 T 31-10-2018 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 Gene3D G3DSA:1.20.58.100 433 549 1.7E-40 T 31-10-2018 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF46977 454 590 2.35E-49 T 31-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3752 3eace1ac6ecd017e4622c2f74d66b2ab 590 SUPERFAMILY SSF56425 240 358 8.52E-40 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_0932 fbcc274e61d8ec89afce90e311d92807 170 Pfam PF01613 Flavin reductase like domain 15 163 3.7E-28 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Y89_0932 fbcc274e61d8ec89afce90e311d92807 170 SMART SM00903 15 162 1.0E-52 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Y89_0932 fbcc274e61d8ec89afce90e311d92807 170 Gene3D G3DSA:2.30.110.10 2 167 8.0E-45 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_0932 fbcc274e61d8ec89afce90e311d92807 170 SUPERFAMILY SSF50475 11 163 2.21E-47 T 31-10-2018 Y89_0932 fbcc274e61d8ec89afce90e311d92807 170 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 163 4.0E-72 T 31-10-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 Y89_0362 4c362dbea672b21f9b0d4c5e71af5614 266 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 254 1.8E-84 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Y89_0362 4c362dbea672b21f9b0d4c5e71af5614 266 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 259 3.8E-86 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Y89_0362 4c362dbea672b21f9b0d4c5e71af5614 266 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Y89_0362 4c362dbea672b21f9b0d4c5e71af5614 266 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 259 20.041 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Y89_1335 43a8a3ac84058f13a7a4cc6967c62a42 134 Gene3D G3DSA:1.20.1270.390 35 131 5.6E-32 T 31-10-2018 Y89_1335 43a8a3ac84058f13a7a4cc6967c62a42 134 Pfam PF14346 Domain of unknown function (DUF4398) 28 125 3.5E-30 T 31-10-2018 IPR025511 Domain of unknown function DUF4398 Y89_1295 17b6b7b20634eb0cc6bb21ce96cf57b6 94 Pfam PF12021 Protein of unknown function (DUF3509) 5 88 4.2E-19 T 31-10-2018 IPR021898 Protein of unknown function DUF3509 Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 SUPERFAMILY SSF47616 74 197 8.63E-34 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 SUPERFAMILY SSF52833 1 81 5.83E-25 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 192 2.0E-8 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 Gene3D G3DSA:1.20.1050.10 83 191 5.0E-90 T 31-10-2018 Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 Gene3D G3DSA:3.40.30.10 6 196 5.0E-90 T 31-10-2018 Y89_3712 5b403c7065f05197a3f4078b6e376c77 220 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 77 7.2E-17 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_5725 552271922f69bbeac47858b4d9079e14 177 Pfam PF00227 Proteasome subunit 2 171 6.0E-21 T 31-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Y89_5725 552271922f69bbeac47858b4d9079e14 177 SUPERFAMILY SSF56235 2 173 1.87E-55 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_5725 552271922f69bbeac47858b4d9079e14 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 173 4.6E-84 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y89_5725 552271922f69bbeac47858b4d9079e14 177 Gene3D G3DSA:3.60.20.10 1 174 5.1E-65 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_5725 552271922f69bbeac47858b4d9079e14 177 PIRSF PIRSF039093 1 176 4.1E-84 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y89_5725 552271922f69bbeac47858b4d9079e14 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 173 41.314 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Y89_0431 cc243581fe7fcac6c3b1e574010a0de6 135 Gene3D G3DSA:3.40.50.12740 7 133 3.6E-37 T 31-10-2018 Y89_0431 cc243581fe7fcac6c3b1e574010a0de6 135 Pfam PF00072 Response regulator receiver domain 10 121 3.2E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0431 cc243581fe7fcac6c3b1e574010a0de6 135 SMART SM00448 8 121 6.9E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0431 cc243581fe7fcac6c3b1e574010a0de6 135 SUPERFAMILY SSF52172 5 126 1.85E-35 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1395 ab3cf052025d76220ab82962bb45249a 408 Pfam PF04143 Sulphur transport 7 162 8.7E-26 T 31-10-2018 IPR007272 Sulphur transport domain Y89_1395 ab3cf052025d76220ab82962bb45249a 408 Pfam PF04143 Sulphur transport 239 393 1.3E-20 T 31-10-2018 IPR007272 Sulphur transport domain Y89_3837 f7728d0e85513bf5b30426271a64bab0 260 SUPERFAMILY SSF51658 1 256 7.05E-88 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_3837 f7728d0e85513bf5b30426271a64bab0 260 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 255 5.1E-129 T 31-10-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 Y89_3837 f7728d0e85513bf5b30426271a64bab0 260 PIRSF PIRSF006241 1 260 5.5E-96 T 31-10-2018 IPR026040 Hydroxypyruvate isomerase-like Y89_3837 f7728d0e85513bf5b30426271a64bab0 260 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 3.8E-34 T 31-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y89_3837 f7728d0e85513bf5b30426271a64bab0 260 Gene3D G3DSA:3.20.20.150 1 258 3.2E-82 T 31-10-2018 Y89_5411 80affd04116d6476d8a2d0d8bae1e54a 192 SUPERFAMILY SSF52540 11 114 8.23E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5411 80affd04116d6476d8a2d0d8bae1e54a 192 Gene3D G3DSA:3.40.50.300 10 141 8.7E-12 T 31-10-2018 Y89_4021 2252dbe268b5343a1cbbb2ada78c019f 138 SUPERFAMILY SSF143744 3 134 1.57E-34 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_4021 2252dbe268b5343a1cbbb2ada78c019f 138 Pfam PF03928 Haem-degrading 5 131 3.4E-30 T 31-10-2018 IPR005624 Haem-degrading Y89_4021 2252dbe268b5343a1cbbb2ada78c019f 138 Gene3D G3DSA:3.30.450.150 1 137 9.7E-43 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 18 149 2.2E-31 T 31-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 21 155 21.959 T 31-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 Gene3D G3DSA:3.30.70.20 28 78 8.3E-9 T 31-10-2018 Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 134 145 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 Pfam PF12838 4Fe-4S dicluster domain 31 76 3.4E-7 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 Pfam PF12838 4Fe-4S dicluster domain 101 148 4.8E-9 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 31 42 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 SUPERFAMILY SSF54862 29 151 3.21E-18 T 31-10-2018 Y89_4177 7d33a0975bedda794332ca0ec663a41d 163 Gene3D G3DSA:3.30.70.20 90 162 5.2E-10 T 31-10-2018 Y89_3992 e16c6cc9a782aa915b317b0ca7ea7795 158 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 7.9E-26 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_3992 e16c6cc9a782aa915b317b0ca7ea7795 158 Gene3D G3DSA:3.90.960.10 1 156 5.8E-45 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_3992 e16c6cc9a782aa915b317b0ca7ea7795 158 SUPERFAMILY SSF55826 4 152 8.5E-41 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_4739 0f3df0d6d963c8977dbbeab7b339fa3b 248 Gene3D G3DSA:3.30.1150.10 148 239 4.5E-8 T 31-10-2018 Y89_4739 0f3df0d6d963c8977dbbeab7b339fa3b 248 Pfam PF13103 TonB C terminal 163 230 2.1E-6 T 31-10-2018 Y89_4739 0f3df0d6d963c8977dbbeab7b339fa3b 248 SUPERFAMILY SSF74653 71 239 7.19E-15 T 31-10-2018 Y89_4739 0f3df0d6d963c8977dbbeab7b339fa3b 248 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 189 238 4.2E-7 T 31-10-2018 IPR006260 TonB/TolA, C-terminal Y89_2467 ca47877d37aab3ee5589634c9a30f103 122 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 39 117 1.2E-34 T 31-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 Y89_2467 ca47877d37aab3ee5589634c9a30f103 122 SUPERFAMILY SSF54736 37 120 8.37E-33 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y89_2467 ca47877d37aab3ee5589634c9a30f103 122 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 17 116 29.359 T 31-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Y89_2467 ca47877d37aab3ee5589634c9a30f103 122 Gene3D G3DSA:3.30.1390.10 18 122 1.7E-43 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y89_3749 1160597cf794a7a400d4235626f4b653 409 Pfam PF00364 Biotin-requiring enzyme 4 76 3.3E-19 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_3749 1160597cf794a7a400d4235626f4b653 409 Pfam PF02817 e3 binding domain 112 145 7.1E-16 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Y89_3749 1160597cf794a7a400d4235626f4b653 409 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_3749 1160597cf794a7a400d4235626f4b653 409 SUPERFAMILY SSF51230 1 96 6.41E-26 T 31-10-2018 IPR011053 Single hybrid motif Y89_3749 1160597cf794a7a400d4235626f4b653 409 SUPERFAMILY SSF52777 179 408 1.33E-86 T 31-10-2018 Y89_3749 1160597cf794a7a400d4235626f4b653 409 Gene3D G3DSA:3.30.559.10 176 409 5.6E-93 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_3749 1160597cf794a7a400d4235626f4b653 409 Gene3D G3DSA:4.10.320.10 113 154 3.9E-17 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_3749 1160597cf794a7a400d4235626f4b653 409 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 409 2.7E-188 T 31-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y89_3749 1160597cf794a7a400d4235626f4b653 409 SUPERFAMILY SSF47005 105 150 1.7E-12 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_3749 1160597cf794a7a400d4235626f4b653 409 Gene3D G3DSA:2.40.50.100 2 102 1.5E-20 T 31-10-2018 Y89_3749 1160597cf794a7a400d4235626f4b653 409 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 179 407 3.0E-79 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Y89_1453 be8b5efb84c359300895114f9186a223 392 SUPERFAMILY SSF103473 3 385 1.7E-58 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1453 be8b5efb84c359300895114f9186a223 392 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 380 2.4E-89 T 31-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 Y89_1453 be8b5efb84c359300895114f9186a223 392 Pfam PF07690 Major Facilitator Superfamily 15 348 7.9E-37 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1453 be8b5efb84c359300895114f9186a223 392 Gene3D G3DSA:1.20.1720.10 5 384 1.0E-108 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 290 6.3E-16 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 Gene3D G3DSA:2.40.30.170 51 300 3.3E-97 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 Gene3D G3DSA:1.10.287.470 98 171 3.3E-97 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 Gene3D G3DSA:2.40.50.100 63 206 3.3E-97 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 SUPERFAMILY SSF111369 53 294 9.94E-71 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 Gene3D G3DSA:2.40.420.20 301 369 3.3E-97 T 31-10-2018 Y89_2699 33a5feb1c1104417f6dc30daa6dd00c0 414 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 371 1.6E-80 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 437 5.7E-31 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 126 4.0E-33 T 31-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 Gene3D G3DSA:1.10.1060.10 10 140 5.0E-37 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 Gene3D G3DSA:3.50.50.60 273 455 1.1E-21 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 Gene3D G3DSA:3.50.50.60 141 260 6.3E-28 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 SUPERFAMILY SSF46548 15 151 1.1E-27 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 SUPERFAMILY SSF51971 139 381 7.65E-51 T 31-10-2018 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 296 1.2E-9 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 164 1.2E-9 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 411 429 1.2E-9 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 372 388 2.7E-19 T 31-10-2018 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 2.7E-19 T 31-10-2018 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 162 2.7E-19 T 31-10-2018 Y89_0463 222fef38784aa1eb8c3fd0d6de8c8a7c 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 401 423 2.7E-19 T 31-10-2018 Y89_2020 5b6301a726b0fd3a913a31eeedfd9ce4 445 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 445 46.074 T 31-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y89_2020 5b6301a726b0fd3a913a31eeedfd9ce4 445 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 255 6.8E-112 T 31-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y89_2020 5b6301a726b0fd3a913a31eeedfd9ce4 445 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 445 1.4E-204 T 31-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 Y89_2020 5b6301a726b0fd3a913a31eeedfd9ce4 445 Pfam PF11973 NQRA C-terminal domain 260 309 1.1E-21 T 31-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 Y89_0828 9dc0ff535b7a200d885fac2647d2c673 232 Gene3D G3DSA:1.10.3720.10 4 227 3.7E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0828 9dc0ff535b7a200d885fac2647d2c673 232 SUPERFAMILY SSF161098 16 212 3.01E-39 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0828 9dc0ff535b7a200d885fac2647d2c673 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 121 2.4E-16 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_0828 9dc0ff535b7a200d885fac2647d2c673 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 225 7.9E-17 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2027 00e405631ec38beed33f9db88fcb8154 75 Pfam PF04400 (Na+)-NQR maturation NqrM 21 59 4.8E-14 T 31-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 SUPERFAMILY SSF103088 60 166 3.92E-35 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 Pfam PF00691 OmpA family 68 162 3.6E-25 T 31-10-2018 IPR006665 OmpA-like domain Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 Gene3D G3DSA:3.30.1330.60 47 167 5.8E-38 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 ProSitePatterns PS01068 OmpA-like domain. 100 144 - T 31-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 67 167 3.7E-42 T 31-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 69 91 1.3E-20 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 98 113 1.3E-20 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 PRINTS PR01021 OMPA domain signature 113 129 1.3E-20 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4382 6f5cb405bc7be79abd6ae63dedbb4567 168 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 168 30.199 T 31-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 Y89_2797 ed946ef7b7c012e7cc6d699e7822b4c8 400 Pfam PF03929 PepSY-associated TM region 12 363 1.0E-61 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_3171 0d7ae068eb6b6637c886439912ea822e 313 SMART SM00797 30 311 9.2E-119 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_3171 0d7ae068eb6b6637c886439912ea822e 313 Gene3D G3DSA:2.40.100.10 184 312 5.2E-35 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3171 0d7ae068eb6b6637c886439912ea822e 313 SUPERFAMILY SSF50891 200 294 6.07E-6 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3171 0d7ae068eb6b6637c886439912ea822e 313 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 31 292 1.0E-73 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_4406 36ae13252a37c70c66fc5e54487903d2 411 Pfam PF03631 Virulence factor BrkB 22 266 7.7E-59 T 31-10-2018 IPR017039 Virulence factor BrkB Y89_4406 36ae13252a37c70c66fc5e54487903d2 411 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 11 267 2.6E-74 T 31-10-2018 IPR017039 Virulence factor BrkB Y89_4406 36ae13252a37c70c66fc5e54487903d2 411 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 9 292 23.632 T 31-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial Y89_3614 3c7dfa5a87bc9e0723d8e92cc982d439 85 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 13 85 5.4E-26 T 31-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 Y89_3614 3c7dfa5a87bc9e0723d8e92cc982d439 85 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 13 85 4.7E-22 T 31-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 Y89_3614 3c7dfa5a87bc9e0723d8e92cc982d439 85 Gene3D G3DSA:1.20.58.90 3 85 2.5E-11 T 31-10-2018 Y89_3614 3c7dfa5a87bc9e0723d8e92cc982d439 85 SUPERFAMILY SSF140129 8 81 1.83E-21 T 31-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 Y89_3181 11e8403b93256486966480a2bf8d087d 169 Gene3D G3DSA:1.10.1740.10 3 77 1.3E-5 T 31-10-2018 Y89_3181 11e8403b93256486966480a2bf8d087d 169 SUPERFAMILY SSF88659 92 164 1.61E-13 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3181 11e8403b93256486966480a2bf8d087d 169 Pfam PF04542 Sigma-70 region 2 15 80 2.2E-11 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3181 11e8403b93256486966480a2bf8d087d 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 160 4.8E-21 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3181 11e8403b93256486966480a2bf8d087d 169 SUPERFAMILY SSF88946 12 98 1.26E-10 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3181 11e8403b93256486966480a2bf8d087d 169 Gene3D G3DSA:1.10.10.10 91 164 1.1E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3181 11e8403b93256486966480a2bf8d087d 169 Pfam PF04545 Sigma-70, region 4 116 163 5.3E-13 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_5378 546cca1893a2aea0618604113b0e5b9e 101 Hamap MF_00460 Protein RnfH [rnfH]. 4 96 24.947 T 31-10-2018 IPR005346 RnfH protein Y89_5378 546cca1893a2aea0618604113b0e5b9e 101 Pfam PF03658 RnfH family Ubiquitin 4 88 2.5E-30 T 31-10-2018 IPR005346 RnfH protein Y89_5378 546cca1893a2aea0618604113b0e5b9e 101 SUPERFAMILY SSF54285 4 80 1.96E-21 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y89_5378 546cca1893a2aea0618604113b0e5b9e 101 Gene3D G3DSA:3.10.20.280 1 90 6.7E-29 T 31-10-2018 IPR037021 RnfH superfamily Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 SUPERFAMILY SSF51905 1 291 2.22E-25 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 2.8E-8 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 2.8E-8 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 2.8E-8 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 2.8E-8 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 Gene3D G3DSA:3.50.50.60 115 222 1.0E-95 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 Gene3D G3DSA:3.50.50.60 3 287 1.0E-95 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 SUPERFAMILY SSF51905 114 215 1.86E-5 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.4E-12 T 31-10-2018 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 246 268 1.4E-12 T 31-10-2018 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.4E-12 T 31-10-2018 Y89_0852 7bffb06107de9db22da9f5583bb9f67f 295 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 271 3.0E-18 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5904 876632905664610a40bbabedd06f0616 332 Gene3D G3DSA:3.40.190.10 27 295 5.4E-117 T 31-10-2018 Y89_5904 876632905664610a40bbabedd06f0616 332 PIRSF PIRSF002825 1 332 6.0E-107 T 31-10-2018 IPR026045 Ferric binding protein Y89_5904 876632905664610a40bbabedd06f0616 332 Pfam PF13343 Bacterial extracellular solute-binding protein 71 297 4.0E-21 T 31-10-2018 Y89_5904 876632905664610a40bbabedd06f0616 332 SUPERFAMILY SSF53850 24 328 4.66E-79 T 31-10-2018 Y89_5904 876632905664610a40bbabedd06f0616 332 Gene3D G3DSA:3.40.190.10 124 330 5.4E-117 T 31-10-2018 Y89_6263 977b07c382e881a8ece5bd4bb24e75d2 464 SUPERFAMILY SSF53383 26 455 1.17E-81 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_6263 977b07c382e881a8ece5bd4bb24e75d2 464 Gene3D G3DSA:3.40.640.10 92 350 2.6E-124 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_6263 977b07c382e881a8ece5bd4bb24e75d2 464 Gene3D G3DSA:3.90.1150.10 25 444 2.6E-124 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_6263 977b07c382e881a8ece5bd4bb24e75d2 464 Pfam PF00202 Aminotransferase class-III 50 428 1.6E-41 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_2022 9186e890bc66112c3a1b94b1c1405b35 261 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 5 259 35.403 T 31-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 Y89_2022 9186e890bc66112c3a1b94b1c1405b35 261 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 255 5.5E-93 T 31-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 Y89_2022 9186e890bc66112c3a1b94b1c1405b35 261 PIRSF PIRSF009437 1 261 7.2E-105 T 31-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 Y89_2022 9186e890bc66112c3a1b94b1c1405b35 261 SMART SM00900 146 247 4.5E-31 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_2022 9186e890bc66112c3a1b94b1c1405b35 261 Pfam PF04205 FMN-binding domain 146 244 4.7E-13 T 31-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 SUPERFAMILY SSF52172 15 179 5.27E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 SMART SM00448 15 127 1.6E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 Pfam PF00072 Response regulator receiver domain 17 126 3.7E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 Gene3D G3DSA:3.40.50.2300 7 174 9.1E-37 T 31-10-2018 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 SUPERFAMILY SSF109604 226 377 2.51E-11 T 31-10-2018 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 Gene3D G3DSA:1.10.3210.10 183 376 2.6E-32 T 31-10-2018 Y89_2615 0753fed3351654e26cbc3e452f3e1a94 447 Pfam PF13487 HD domain 263 322 2.0E-17 T 31-10-2018 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 31-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 Gene3D G3DSA:2.20.28.120 1 51 3.5E-28 T 31-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 14.99 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 SUPERFAMILY SSF57829 1 49 2.93E-18 T 31-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 51 2.4E-25 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6053 0c8b2ee8b1ac9d6f16c7ca263da8107d 51 Pfam PF00471 Ribosomal protein L33 4 49 3.6E-17 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 65 1.9E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 SUPERFAMILY SSF53850 91 292 1.24E-31 T 31-10-2018 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 Gene3D G3DSA:3.40.190.290 95 273 2.1E-33 T 31-10-2018 Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 Gene3D G3DSA:1.10.10.10 1 86 1.1E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 Pfam PF03466 LysR substrate binding domain 90 290 1.2E-30 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5660 bbd78acf272c8b071687b4913b3ff6b8 294 SUPERFAMILY SSF46785 2 85 6.81E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 Gene3D G3DSA:3.30.950.10 140 245 6.4E-17 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 9 221 9.9E-48 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 7 239 1.5E-66 T 31-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 SUPERFAMILY SSF53790 2 240 1.83E-49 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 Gene3D G3DSA:3.40.1010.10 5 139 1.1E-30 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_2118 0f7c971057528f90f2a4bb54ab3136e9 250 PIRSF PIRSF036427 5 246 1.1E-69 T 31-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 Y89_5262 1e138bb49760af321f965e453d08bea0 262 SUPERFAMILY SSF49354 32 161 2.49E-26 T 31-10-2018 IPR008962 PapD-like superfamily Y89_5262 1e138bb49760af321f965e453d08bea0 262 Gene3D G3DSA:2.60.40.10 40 157 1.8E-7 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_5262 1e138bb49760af321f965e453d08bea0 262 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 41 156 1.4E-17 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_3149 1d891ebc9b769aca159091830128c7fa 453 Gene3D G3DSA:2.60.40.1090 273 451 3.2E-6 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_3149 1d891ebc9b769aca159091830128c7fa 453 PIRSF PIRSF029766 7 453 2.0E-199 T 31-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 Y89_3149 1d891ebc9b769aca159091830128c7fa 453 SUPERFAMILY SSF49401 274 451 9.11E-9 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_3149 1d891ebc9b769aca159091830128c7fa 453 Pfam PF00419 Fimbrial protein 268 453 9.2E-28 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_0772 5795d52f7430457cc585af753fe24d1a 101 SUPERFAMILY SSF57716 2 101 1.14E-37 T 31-10-2018 Y89_0772 5795d52f7430457cc585af753fe24d1a 101 Gene3D G3DSA:4.10.830.10 41 101 2.7E-22 T 31-10-2018 Y89_0772 5795d52f7430457cc585af753fe24d1a 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.573 T 31-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid Y89_0772 5795d52f7430457cc585af753fe24d1a 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 31-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0772 5795d52f7430457cc585af753fe24d1a 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.2E-24 T 31-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 Gene3D G3DSA:3.40.50.1100 117 239 2.3E-189 T 31-10-2018 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 Gene3D G3DSA:3.40.50.1100 26 440 2.3E-189 T 31-10-2018 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 109 123 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 10 440 1.7E-240 T 31-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 SUPERFAMILY SSF53686 98 440 8.64E-55 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_1652 28dcd713e26bce389c3ad63151862c30 448 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 448 258.726 T 31-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Y89_1652 28dcd713e26bce389c3ad63151862c30 448 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 97 398 3.4E-57 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_4460 0bbe4202563e2e8fe83eb603ca909b7c 448 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 447 60.533 T 31-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y89_4460 0bbe4202563e2e8fe83eb603ca909b7c 448 Gene3D G3DSA:3.75.10.20 1 448 2.0E-207 T 31-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y89_4460 0bbe4202563e2e8fe83eb603ca909b7c 448 Pfam PF04996 Succinylarginine dihydrolase 3 446 2.3E-224 T 31-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y89_4460 0bbe4202563e2e8fe83eb603ca909b7c 448 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 446 5.2E-247 T 31-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 Y89_4460 0bbe4202563e2e8fe83eb603ca909b7c 448 SUPERFAMILY SSF55909 3 446 3.53E-206 T 31-10-2018 Y89_2796 7ecb6f7ff605cb86a9ce24a6b37cda65 179 PIRSF PIRSF029505 1 179 1.3E-95 T 31-10-2018 IPR016922 Uncharacterised conserved protein UCP029505 Y89_0623 7866d90ef29723972d565d4243c6c9c0 69 Gene3D G3DSA:1.20.120.910 2 67 3.1E-13 T 31-10-2018 Y89_0623 7866d90ef29723972d565d4243c6c9c0 69 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 66 5.1E-10 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y89_5587 0d8352d12f83347049413270374aec99 200 Gene3D G3DSA:3.40.50.620 25 193 6.9E-27 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5587 0d8352d12f83347049413270374aec99 200 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 27 61 4.9E-7 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_5587 0d8352d12f83347049413270374aec99 200 Pfam PF01467 Cytidylyltransferase-like 28 156 5.4E-6 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_5587 0d8352d12f83347049413270374aec99 200 SUPERFAMILY SSF52374 27 177 1.56E-21 T 31-10-2018 Y89_6137 9b40c30b6f722bec373923852a778355 653 SUPERFAMILY SSF46548 222 352 2.27E-19 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_6137 9b40c30b6f722bec373923852a778355 653 Pfam PF13183 4Fe-4S dicluster domain 242 336 7.6E-12 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_6137 9b40c30b6f722bec373923852a778355 653 Pfam PF02754 Cysteine-rich domain 525 611 9.9E-14 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_6137 9b40c30b6f722bec373923852a778355 653 Pfam PF02754 Cysteine-rich domain 402 481 0.0079 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_6137 9b40c30b6f722bec373923852a778355 653 Gene3D G3DSA:1.10.1060.10 309 358 7.0E-6 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_6137 9b40c30b6f722bec373923852a778355 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 323 334 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_6137 9b40c30b6f722bec373923852a778355 653 Pfam PF11982 Domain of unknown function (DUF3483) 4 220 1.4E-89 T 31-10-2018 IPR021872 Protein of unknown function DUF3483 Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 Gene3D G3DSA:1.20.1440.100 15 87 5.0E-67 T 31-10-2018 Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 1.5E-28 T 31-10-2018 Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 SUPERFAMILY SSF56784 2 206 1.68E-28 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 Gene3D G3DSA:3.40.50.1000 4 212 5.0E-67 T 31-10-2018 IPR023214 HAD superfamily Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 200 5.5E-48 T 31-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y89_1759 066a6eb8f32d162abc3c16c42e7774c3 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 6.8E-31 T 31-10-2018 Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 9.7E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 9.7E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 9.7E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 SMART SM00347 28 128 9.2E-30 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 Gene3D G3DSA:1.10.10.10 9 142 4.6E-37 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 SUPERFAMILY SSF46785 6 138 1.67E-29 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0447 eef0b1b6d32357b2a7283ec9a954393f 147 Pfam PF01047 MarR family 35 92 9.1E-17 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 331 1.5E-136 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 31-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PIRSF PIRSF001415 3 336 2.3E-149 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 Gene3D G3DSA:3.20.20.70 1 337 1.9E-153 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 SUPERFAMILY SSF51569 8 334 4.54E-141 T 31-10-2018 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 1.5E-56 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_5931 27bc69e242d58c65006826ba0f00904c 337 SMART SM01004 10 333 3.6E-240 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 31-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 592 4.8E-25 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Gene3D G3DSA:1.10.1040.50 498 709 6.4E-81 T 31-10-2018 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 31-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 SUPERFAMILY SSF51735 314 496 1.76E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.229 T 31-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 495 2.9E-61 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 SUPERFAMILY SSF52096 2 308 8.83E-70 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2005 55fe83262017e2e23c660dbe95aef357 715 SUPERFAMILY SSF48179 622 714 6.29E-24 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Gene3D G3DSA:3.40.50.720 314 497 1.4E-68 T 31-10-2018 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Gene3D G3DSA:3.90.226.10 1 313 1.5E-117 T 31-10-2018 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 SUPERFAMILY SSF48179 496 616 3.57E-29 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_2005 55fe83262017e2e23c660dbe95aef357 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 212 8.4E-40 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_0213 d5f7655ec3c83af5fcc134e36f8cafe1 70 Pfam PF11278 Protein of unknown function (DUF3079) 1 49 8.2E-34 T 31-10-2018 IPR021430 Protein of unknown function DUF3079 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 Pfam PF03466 LysR substrate binding domain 88 292 1.7E-41 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5905 af11a732054053138625f17f4aa1b3cc 304 Gene3D G3DSA:1.10.10.10 2 94 1.2E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5905 af11a732054053138625f17f4aa1b3cc 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.1E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 Gene3D G3DSA:3.40.190.10 167 271 6.4E-53 T 31-10-2018 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 SUPERFAMILY SSF53850 88 295 4.11E-37 T 31-10-2018 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 SUPERFAMILY SSF46785 2 87 2.18E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5905 af11a732054053138625f17f4aa1b3cc 304 Gene3D G3DSA:3.40.190.10 95 291 6.4E-53 T 31-10-2018 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5905 af11a732054053138625f17f4aa1b3cc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6049 378cbfdc589e0f148321eaf86704169b 387 Gene3D G3DSA:1.20.1250.20 2 180 3.4E-16 T 31-10-2018 Y89_6049 378cbfdc589e0f148321eaf86704169b 387 SUPERFAMILY SSF103473 3 369 5.89E-38 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_6049 378cbfdc589e0f148321eaf86704169b 387 Pfam PF07690 Major Facilitator Superfamily 11 238 1.3E-14 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_6049 378cbfdc589e0f148321eaf86704169b 387 Gene3D G3DSA:1.20.1250.20 196 384 1.6E-13 T 31-10-2018 Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 SUPERFAMILY SSF56281 3 467 6.77E-131 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 Pfam PF00753 Metallo-beta-lactamase superfamily 13 227 6.6E-12 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 Gene3D G3DSA:3.40.50.10890 223 409 2.7E-143 T 31-10-2018 Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 Pfam PF10996 Beta-Casp domain 255 383 8.5E-26 T 31-10-2018 IPR022712 Beta-Casp domain Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 Gene3D G3DSA:3.60.15.10 7 443 2.7E-143 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 SMART SM01027 255 383 2.6E-56 T 31-10-2018 IPR022712 Beta-Casp domain Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 SMART SM00849 14 250 2.1E-25 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1412 d0d046bcbb3ade39142037297fee1e52 467 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 397 459 1.2E-16 T 31-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 276 366 1.6E-24 T 31-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 Gene3D G3DSA:2.60.410.10 276 366 7.7E-34 T 31-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 Gene3D G3DSA:3.40.710.10 24 275 2.4E-99 T 31-10-2018 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 255 1.1E-87 T 31-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 SUPERFAMILY SSF69189 276 368 8.04E-25 T 31-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 4.3E-18 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 4.3E-18 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 4.3E-18 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 SUPERFAMILY SSF56601 8 276 3.04E-90 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_1025 7fcd2f8580bc51cb80272962c9039e66 386 SMART SM00936 276 366 1.5E-32 T 31-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_3079 ba26c279fc5efd065a2e18bcf400bd06 531 Pfam PF00563 EAL domain 281 513 2.9E-55 T 31-10-2018 IPR001633 EAL domain Y89_3079 ba26c279fc5efd065a2e18bcf400bd06 531 SMART SM00052 274 519 2.5E-71 T 31-10-2018 IPR001633 EAL domain Y89_3079 ba26c279fc5efd065a2e18bcf400bd06 531 SUPERFAMILY SSF141868 281 527 2.48E-66 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3079 ba26c279fc5efd065a2e18bcf400bd06 531 Gene3D G3DSA:3.20.20.450 277 529 5.4E-72 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3079 ba26c279fc5efd065a2e18bcf400bd06 531 Pfam PF12792 CSS motif domain associated with EAL 46 241 6.4E-34 T 31-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Y89_0519 931168b6fb51e73f117de787a398da0b 332 Pfam PF00419 Fimbrial protein 196 332 3.6E-16 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_0519 931168b6fb51e73f117de787a398da0b 332 Gene3D G3DSA:2.60.40.1090 197 331 6.1E-7 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_0519 931168b6fb51e73f117de787a398da0b 332 SUPERFAMILY SSF49401 206 331 1.89E-13 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 Gene3D G3DSA:1.10.287.470 96 169 3.1E-90 T 31-10-2018 Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 Gene3D G3DSA:2.40.420.20 297 362 3.1E-90 T 31-10-2018 Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 358 1.7E-78 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 Gene3D G3DSA:2.40.50.100 61 204 3.1E-90 T 31-10-2018 Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 286 3.1E-19 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 Gene3D G3DSA:2.40.30.170 48 296 3.1E-90 T 31-10-2018 Y89_1504 e22f689fa8e5eb875cb8569a357c0680 385 SUPERFAMILY SSF111369 50 293 1.7E-65 T 31-10-2018 Y89_4692 63641ce5490f895552959f50d887dab6 276 Pfam PF00905 Penicillin binding protein transpeptidase domain 42 261 1.1E-43 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_4692 63641ce5490f895552959f50d887dab6 276 ProSitePatterns PS00337 Beta-lactamase class-D active site. 69 79 - T 31-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 Y89_4692 63641ce5490f895552959f50d887dab6 276 SUPERFAMILY SSF56601 28 275 4.66E-36 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4692 63641ce5490f895552959f50d887dab6 276 Gene3D G3DSA:3.40.710.10 26 276 8.7E-103 T 31-10-2018 Y89_0596 d3b245b038fb0e75d115435af16822e8 400 ProSitePatterns PS00674 AAA-protein family signature. 237 256 - T 31-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Y89_0596 d3b245b038fb0e75d115435af16822e8 400 SMART SM00382 135 267 2.4E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0596 d3b245b038fb0e75d115435af16822e8 400 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 139 263 7.0E-30 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0596 d3b245b038fb0e75d115435af16822e8 400 Gene3D G3DSA:1.10.8.60 266 315 1.6E-41 T 31-10-2018 Y89_0596 d3b245b038fb0e75d115435af16822e8 400 Gene3D G3DSA:3.40.50.300 111 265 1.6E-41 T 31-10-2018 Y89_0596 d3b245b038fb0e75d115435af16822e8 400 SUPERFAMILY SSF52540 108 327 6.18E-39 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4305 92c61410af87826f2f326ff0967e5dcc 370 Gene3D G3DSA:1.10.10.2840 240 368 3.3E-19 T 31-10-2018 Y89_4305 92c61410af87826f2f326ff0967e5dcc 370 Pfam PF13556 PucR C-terminal helix-turn-helix domain 306 363 1.4E-17 T 31-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Y89_4305 92c61410af87826f2f326ff0967e5dcc 370 Pfam PF05651 Putative sugar diacid recognition 4 137 1.7E-49 T 31-10-2018 IPR008599 Putative sugar diacid recognition Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 SUPERFAMILY SSF69349 442 493 1.41E-9 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 475 581 6.1E-34 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Gene3D G3DSA:3.30.1920.30 221 284 4.0E-79 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 SUPERFAMILY SSF69255 364 451 1.02E-33 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Gene3D G3DSA:3.55.50.10 96 187 4.0E-79 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Pfam PF05954 Phage late control gene D protein (GPD) 27 327 1.3E-74 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 SUPERFAMILY SSF69279 9 182 1.53E-47 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 19 502 6.4E-120 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 SUPERFAMILY SSF69279 197 365 1.87E-31 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Gene3D G3DSA:2.40.50.230 358 456 1.9E-41 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 615 759 5.2E-49 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 Gene3D G3DSA:2.30.110.50 21 328 4.0E-79 T 31-10-2018 Y89_3827 2221fb8a4a5f78fe41f98ea031196919 842 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 493 1.1E-160 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 TIGRFAM TIGR02695 azurin: azurin 23 147 1.5E-62 T 31-10-2018 IPR014068 Azurin Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 SUPERFAMILY SSF49503 21 147 1.81E-48 T 31-10-2018 IPR008972 Cupredoxin Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 148 2.6E-32 T 31-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 Gene3D G3DSA:2.60.40.420 21 148 5.5E-48 T 31-10-2018 IPR008972 Cupredoxin Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 125 141 - T 31-10-2018 IPR028871 Blue (type 1) copper protein, binding site Y89_5592 fa752ba998c90bd70d52744650d0cdd2 148 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 27 146 5.0E-67 T 31-10-2018 Y89_0154 883ffe355bc23682b35d45f01c0a9da9 357 PIRSF PIRSF028756 48 346 8.5E-131 T 31-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 Y89_0154 883ffe355bc23682b35d45f01c0a9da9 357 Gene3D G3DSA:3.40.50.300 55 337 9.3E-104 T 31-10-2018 Y89_0154 883ffe355bc23682b35d45f01c0a9da9 357 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 89 316 6.5E-118 T 31-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 Y89_0154 883ffe355bc23682b35d45f01c0a9da9 357 SUPERFAMILY SSF52540 121 308 2.24E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0154 883ffe355bc23682b35d45f01c0a9da9 357 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 90 316 9.8E-112 T 31-10-2018 IPR022488 Polyphosphate kinase-2-related Y89_5563 d59212f0b2c4fe0206bc13502f52f01c 190 Pfam PF04955 HupE / UreJ protein 10 187 2.8E-61 T 31-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein Y89_5563 d59212f0b2c4fe0206bc13502f52f01c 190 PIRSF PIRSF016919 1 190 4.2E-64 T 31-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein Y89_1714 a28a442a1ad99532831b57a05cfe7f09 69 Pfam PF09720 Putative addiction module component 15 62 9.0E-7 T 31-10-2018 IPR013406 Conserved hypothetical protein CHP02574, addiction module Y89_1934 28e4a4f78843da2ac6d2ce917af693a5 87 Pfam PF07023 Protein of unknown function (DUF1315) 6 67 8.4E-29 T 31-10-2018 IPR009749 Protein of unknown function DUF1315 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 SUPERFAMILY SSF46894 132 211 2.07E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 SUPERFAMILY SSF52172 2 132 9.53E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 SMART SM00448 2 115 6.8E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 Pfam PF00072 Response regulator receiver domain 4 116 2.4E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 Gene3D G3DSA:3.40.50.12740 2 210 2.6E-61 T 31-10-2018 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 5.5E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 5.5E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 5.5E-5 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 SMART SM00421 147 204 4.4E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2502 aa1d3827711d5574adbed81e6d432cc7 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 204 1.3E-14 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 SUPERFAMILY SSF52540 190 441 3.11E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 Pfam PF06956 Regulator of RNA terminal phosphate cyclase 2 188 2.6E-86 T 31-10-2018 IPR009715 Regulator of RNA terminal phosphate cyclase Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 Pfam PF00158 Sigma-54 interaction domain 190 358 1.1E-49 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 279 294 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 Gene3D G3DSA:3.40.50.300 175 364 2.5E-49 T 31-10-2018 Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 SMART SM00382 210 356 3.0E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 Gene3D G3DSA:1.10.8.60 366 444 7.5E-7 T 31-10-2018 Y89_5188 c042802456cabb461e7ca7d91c32c0dd 531 PIRSF PIRSF037354 1 531 1.2E-299 T 31-10-2018 IPR017183 Sigma54-dependent transcriptional activator, RtcR GO:0003700|GO:0006355 Y89_3068 24b0a72e60ecd029c59238478efb18b9 319 Pfam PF04909 Amidohydrolase 10 300 1.9E-39 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_3068 24b0a72e60ecd029c59238478efb18b9 319 Gene3D G3DSA:3.20.20.140 7 308 1.5E-76 T 31-10-2018 Y89_3068 24b0a72e60ecd029c59238478efb18b9 319 SUPERFAMILY SSF51556 8 300 4.0E-46 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_3673 19a52fb616784a0e0b3bac882cd7bbd7 335 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 20 320 1.6E-97 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_3673 19a52fb616784a0e0b3bac882cd7bbd7 335 Pfam PF06996 Type VI secretion, TssG 20 320 1.9E-88 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 PRINTS PR00147 DNA photolyase signature 384 398 1.1E-22 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 PRINTS PR00147 DNA photolyase signature 325 341 1.1E-22 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 PRINTS PR00147 DNA photolyase signature 345 363 1.1E-22 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 SUPERFAMILY SSF48173 194 468 7.59E-109 T 31-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 SUPERFAMILY SSF52425 2 185 1.09E-50 T 31-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 Pfam PF00875 DNA photolyase 3 166 3.7E-44 T 31-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 Gene3D G3DSA:1.10.579.10 293 470 1.3E-78 T 31-10-2018 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 Gene3D G3DSA:1.25.40.80 132 286 1.8E-83 T 31-10-2018 Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 31-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 Gene3D G3DSA:3.40.50.620 3 202 1.8E-83 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5271 375186a91f4163abca1e0e3be24b9cc9 476 Pfam PF03441 FAD binding domain of DNA photolyase 275 467 3.3E-82 T 31-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 Y89_5653 516d53d00359b6e96a4710e6cc4e993c 258 Gene3D G3DSA:3.40.190.10 107 203 3.1E-21 T 31-10-2018 Y89_5653 516d53d00359b6e96a4710e6cc4e993c 258 Gene3D G3DSA:3.40.190.10 31 239 3.1E-21 T 31-10-2018 Y89_5653 516d53d00359b6e96a4710e6cc4e993c 258 SUPERFAMILY SSF53850 23 241 1.87E-35 T 31-10-2018 Y89_5653 516d53d00359b6e96a4710e6cc4e993c 258 SMART SM00062 22 243 8.7E-12 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5653 516d53d00359b6e96a4710e6cc4e993c 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 238 1.2E-15 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3314 fcd657bf7d432541b6152e74b1ea2440 432 Gene3D G3DSA:2.60.120.10 272 398 2.3E-63 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3314 fcd657bf7d432541b6152e74b1ea2440 432 SUPERFAMILY SSF51182 8 431 7.56E-160 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3314 fcd657bf7d432541b6152e74b1ea2440 432 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 9 429 71.026 T 31-10-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 Y89_3314 fcd657bf7d432541b6152e74b1ea2440 432 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 8 426 3.6E-196 T 31-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 Y89_3314 fcd657bf7d432541b6152e74b1ea2440 432 Pfam PF04209 homogentisate 1,2-dioxygenase 9 427 5.3E-213 T 31-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 Y89_2617 6c48fcc8b4571780d112da8d59878ad9 122 Gene3D G3DSA:2.60.120.430 2 122 3.3E-50 T 31-10-2018 Y89_2617 6c48fcc8b4571780d112da8d59878ad9 122 PIRSF PIRSF020485 1 122 2.7E-74 T 31-10-2018 IPR012905 PA-IL-like Y89_2617 6c48fcc8b4571780d112da8d59878ad9 122 SUPERFAMILY SSF49785 2 122 1.96E-64 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_2617 6c48fcc8b4571780d112da8d59878ad9 122 Pfam PF07828 PA-IL-like protein 2 122 1.3E-71 T 31-10-2018 IPR012905 PA-IL-like Y89_4695 c225d258f3b89f4887f70477f8ecac8a 961 Pfam PF01526 Tn3 transposase DDE domain 570 956 1.2E-141 T 31-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Y89_4695 c225d258f3b89f4887f70477f8ecac8a 961 Pfam PF13700 Domain of unknown function (DUF4158) 7 169 1.0E-51 T 31-10-2018 IPR025296 Domain of unknown function DUF4158 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 PIRSF PIRSF000412 1 418 1.0E-169 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 SUPERFAMILY SSF53383 6 416 1.32E-183 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 Pfam PF00464 Serine hydroxymethyltransferase 9 386 6.0E-181 T 31-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.453 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 31-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 Gene3D G3DSA:3.40.640.10 37 289 2.3E-186 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2754 27a7c3e784bd7940f0c520521949b3ec 418 Gene3D G3DSA:3.90.1150.10 11 396 2.3E-186 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4034 4426e7130f715a55c4858c1e9b2b487f 513 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4034 4426e7130f715a55c4858c1e9b2b487f 513 SUPERFAMILY SSF103473 1 488 4.97E-66 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4034 4426e7130f715a55c4858c1e9b2b487f 513 Pfam PF07690 Major Facilitator Superfamily 13 405 6.5E-52 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4034 4426e7130f715a55c4858c1e9b2b487f 513 Gene3D G3DSA:1.20.1720.10 9 222 7.0E-49 T 31-10-2018 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 SUPERFAMILY SSF48208 49 542 6.8E-161 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 Hamap MF_01060 Periplasmic trehalase [treA]. 2 541 85.813 T 31-10-2018 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 ProSitePatterns PS00928 Trehalase signature 2. 453 462 - T 31-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 ProSitePatterns PS00927 Trehalase signature 1. 157 170 - T 31-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 Pfam PF01204 Trehalase 64 540 4.6E-171 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 199 217 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 274 291 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 523 536 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 446 462 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 340 357 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 PRINTS PR00744 Glycosyl hydrolase family 37 signature 308 325 6.2E-41 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Y89_2784 937d5d90194bfe6550fe8af9c5f42659 545 Gene3D G3DSA:1.50.10.10 47 543 1.8E-175 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Y89_6003 fd46b64175681dc779552028b74a924d 883 SUPERFAMILY SSF52540 20 497 5.11E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6003 fd46b64175681dc779552028b74a924d 883 Gene3D G3DSA:1.20.1580.10 653 810 6.4E-128 T 31-10-2018 Y89_6003 fd46b64175681dc779552028b74a924d 883 ProSitePatterns PS00211 ABC transporters family signature. 769 783 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6003 fd46b64175681dc779552028b74a924d 883 SUPERFAMILY SSF52540 545 853 3.22E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6003 fd46b64175681dc779552028b74a924d 883 Gene3D G3DSA:3.40.50.300 543 875 6.4E-128 T 31-10-2018 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF89000 302 452 1.61E-51 T 31-10-2018 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF00364 Biotin-requiring enzyme 540 605 2.4E-17 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF02436 Conserved carboxylase domain 297 488 7.0E-57 T 31-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF51230 532 605 2.36E-21 T 31-10-2018 IPR011053 Single hybrid motif Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Gene3D G3DSA:2.40.50.100 530 606 4.2E-25 T 31-10-2018 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 SUPERFAMILY SSF51569 5 305 6.04E-90 T 31-10-2018 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 12 602 9.0E-257 T 31-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Pfam PF00682 HMGL-like 12 273 1.1E-50 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y89_6174 4b4a6c6e8fb0df9b62e8e27f8d6a32e0 607 Gene3D G3DSA:3.20.20.70 1 461 1.2E-173 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1964 3bdbdaeae51b333c8bdb3c1ab442dc96 158 SUPERFAMILY SSF47413 12 64 4.07E-5 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_1964 3bdbdaeae51b333c8bdb3c1ab442dc96 158 Gene3D G3DSA:1.10.260.40 11 94 1.5E-6 T 31-10-2018 Y89_2946 0e9740c32d701c52bd206aed5e19f421 282 Pfam PF00005 ABC transporter 37 178 1.0E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2946 0e9740c32d701c52bd206aed5e19f421 282 SUPERFAMILY SSF52540 17 230 3.88E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2946 0e9740c32d701c52bd206aed5e19f421 282 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2946 0e9740c32d701c52bd206aed5e19f421 282 SMART SM00382 45 226 4.9E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2946 0e9740c32d701c52bd206aed5e19f421 282 Gene3D G3DSA:3.40.50.300 14 243 9.2E-64 T 31-10-2018 Y89_5528 0e1d204c150ecc2ea7030ccdf9f7df65 529 Gene3D G3DSA:1.25.10.110 161 229 7.0E-6 T 31-10-2018 Y89_5528 0e1d204c150ecc2ea7030ccdf9f7df65 529 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 235 526 1.0E-132 T 31-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type Y89_5528 0e1d204c150ecc2ea7030ccdf9f7df65 529 Pfam PF02653 Branched-chain amino acid transport system / permease component 237 512 2.1E-54 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_5528 0e1d204c150ecc2ea7030ccdf9f7df65 529 SUPERFAMILY SSF48371 125 225 8.06E-7 T 31-10-2018 IPR016024 Armadillo-type fold Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 394 1.8E-40 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 Gene3D G3DSA:2.40.110.10 130 247 3.8E-37 T 31-10-2018 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 SUPERFAMILY SSF47203 241 396 7.09E-37 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 SUPERFAMILY SSF56645 8 254 4.19E-47 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 Gene3D G3DSA:1.10.540.10 1 128 7.1E-7 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 Gene3D G3DSA:1.20.140.10 248 400 1.6E-35 T 31-10-2018 Y89_5665 0444daf4aac4ef3849dc366fcd077a47 402 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.9E-23 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4427 60507205f09995f904939f536e07f3da 299 TIGRFAM TIGR01138 cysM: cysteine synthase B 7 296 8.5E-171 T 31-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y89_4427 60507205f09995f904939f536e07f3da 299 Gene3D G3DSA:3.40.50.1100 39 144 1.3E-110 T 31-10-2018 Y89_4427 60507205f09995f904939f536e07f3da 299 Gene3D G3DSA:3.40.50.1100 12 292 1.3E-110 T 31-10-2018 Y89_4427 60507205f09995f904939f536e07f3da 299 SUPERFAMILY SSF53686 5 294 2.23E-90 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_4427 60507205f09995f904939f536e07f3da 299 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 31-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y89_4427 60507205f09995f904939f536e07f3da 299 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 296 1.3E-124 T 31-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y89_4427 60507205f09995f904939f536e07f3da 299 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 285 2.6E-68 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_3706 c3e9fd794d2a0b30f83b4088960ed221 261 SUPERFAMILY SSF52096 7 260 3.11E-88 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3706 c3e9fd794d2a0b30f83b4088960ed221 261 Gene3D G3DSA:1.10.12.10 204 260 1.2E-24 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_3706 c3e9fd794d2a0b30f83b4088960ed221 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_3706 c3e9fd794d2a0b30f83b4088960ed221 261 Gene3D G3DSA:3.90.226.10 6 203 7.6E-69 T 31-10-2018 Y89_3706 c3e9fd794d2a0b30f83b4088960ed221 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 260 1.1E-72 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_3309 888c3625c0936528bc1504de3305187e 535 SUPERFAMILY SSF52096 237 517 5.97E-91 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3309 888c3625c0936528bc1504de3305187e 535 SUPERFAMILY SSF52096 23 270 2.99E-74 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3309 888c3625c0936528bc1504de3305187e 535 Gene3D G3DSA:3.90.226.10 1 272 1.4E-102 T 31-10-2018 Y89_3309 888c3625c0936528bc1504de3305187e 535 Pfam PF01039 Carboxyl transferase domain 48 525 1.2E-155 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_3309 888c3625c0936528bc1504de3305187e 535 Gene3D G3DSA:3.90.226.10 275 535 2.0E-105 T 31-10-2018 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 Pfam PF06969 HemN C-terminal domain 369 435 5.0E-12 T 31-10-2018 IPR010723 HemN, C-terminal Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 PIRSF PIRSF000167 3 459 4.0E-168 T 31-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 460 3.1E-173 T 31-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 Gene3D G3DSA:3.80.30.20 2 367 6.0E-119 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 Pfam PF04055 Radical SAM superfamily 58 232 3.4E-18 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 Gene3D G3DSA:1.10.10.920 368 460 7.5E-32 T 31-10-2018 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 SMART SM00729 53 276 4.8E-51 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_3792 47b85eb241fea8b0c719959ccf04bd57 460 SUPERFAMILY SSF102114 5 448 1.27E-134 T 31-10-2018 Y89_0703 cafcb45ec35e3be49e913f57085fda86 209 SUPERFAMILY SSF53955 2 208 3.09E-47 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_0703 cafcb45ec35e3be49e913f57085fda86 209 Pfam PF00182 Chitinase class I 75 167 1.1E-4 T 31-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Y89_0703 cafcb45ec35e3be49e913f57085fda86 209 Gene3D G3DSA:1.10.530.70 17 208 4.2E-21 T 31-10-2018 Y89_3323 0b98d5de4aca98813e101f57334311d2 218 SUPERFAMILY SSF100950 4 216 3.27E-74 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_3323 0b98d5de4aca98813e101f57334311d2 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 1.1E-98 T 31-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Y89_3323 0b98d5de4aca98813e101f57334311d2 218 Pfam PF01144 Coenzyme A transferase 6 201 1.8E-41 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_3323 0b98d5de4aca98813e101f57334311d2 218 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 31-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 Y89_3323 0b98d5de4aca98813e101f57334311d2 218 Gene3D G3DSA:3.40.1080.10 1 213 3.2E-93 T 31-10-2018 Y89_3323 0b98d5de4aca98813e101f57334311d2 218 SMART SM00882 6 202 5.8E-72 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Y89_6117 5e0eb206c11c55b7000149bf29b48664 458 Pfam PF03315 Serine dehydratase beta chain 4 154 9.2E-55 T 31-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y89_6117 5e0eb206c11c55b7000149bf29b48664 458 Pfam PF03313 Serine dehydratase alpha chain 186 452 2.1E-103 T 31-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Y89_6117 5e0eb206c11c55b7000149bf29b48664 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 454 3.7E-210 T 31-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Y89_6117 5e0eb206c11c55b7000149bf29b48664 458 Gene3D G3DSA:3.30.1330.90 11 158 3.2E-51 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Y89_6117 5e0eb206c11c55b7000149bf29b48664 458 SUPERFAMILY SSF143548 17 154 6.8E-45 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 Gene3D G3DSA:3.40.30.10 1 84 6.2E-29 T 31-10-2018 Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 Pfam PF00462 Glutaredoxin 4 63 7.8E-22 T 31-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.2E-15 T 31-10-2018 IPR014025 Glutaredoxin subgroup Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.2E-15 T 31-10-2018 IPR014025 Glutaredoxin subgroup Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.2E-15 T 31-10-2018 IPR014025 Glutaredoxin subgroup Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 SUPERFAMILY SSF52833 1 83 1.2E-29 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 2.0E-35 T 31-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 Y89_5801 c4a55980bb84ae5ee46d0e5927b71929 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 31-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 Gene3D G3DSA:3.40.50.1000 7 207 2.5E-52 T 31-10-2018 IPR023214 HAD superfamily Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 180 6.0E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 186 5.4E-30 T 31-10-2018 Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 Gene3D G3DSA:1.10.150.240 19 86 2.5E-52 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 125 186 1.7E-8 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_2046 c9744cfe1f29945832e2a02f5e636f88 230 SUPERFAMILY SSF56784 3 215 5.65E-58 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 11 297 1.8E-119 T 31-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Gene3D G3DSA:1.10.150.130 6 99 4.4E-24 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 298 57.571 T 31-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Gene3D G3DSA:1.10.443.10 111 292 3.4E-71 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Pfam PF00589 Phage integrase family 113 283 5.1E-52 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 SUPERFAMILY SSF56349 8 288 2.21E-59 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 90 3.9E-19 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_1289 7ef5027d1e9e1bad08f5f11c5f034a38 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 298 65.88 T 31-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:3.40.190.10 163 268 2.7E-53 T 31-10-2018 Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:3.40.190.10 91 294 2.7E-53 T 31-10-2018 Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 Gene3D G3DSA:1.10.10.10 2 88 1.1E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 SUPERFAMILY SSF46785 3 87 1.14E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 Pfam PF03466 LysR substrate binding domain 88 297 6.2E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 SUPERFAMILY SSF53850 89 299 1.71E-37 T 31-10-2018 Y89_4038 ece9cd86e014bd5ba0c7fb4532679c46 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 410 2.2E-162 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 5.0E-30 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 5.0E-30 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 5.0E-30 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 5.0E-30 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 30 368 2.6E-25 T 31-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 SUPERFAMILY SSF51419 26 282 4.97E-81 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 Gene3D G3DSA:3.20.20.10 34 275 3.5E-153 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 SUPERFAMILY SSF50621 255 411 1.15E-53 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 31-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 9.5E-27 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 9.5E-27 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 9.5E-27 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 9.5E-27 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 9.5E-27 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 Gene3D G3DSA:2.40.37.10 16 407 3.5E-153 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 411 43.118 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Y89_5966 547ba5556f547a4014d8a15ae7e8c324 415 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 280 1.5E-80 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Y89_1827 37531d42b71f4556013fbdb561dcd929 310 SUPERFAMILY SSF161098 70 296 3.27E-49 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1827 37531d42b71f4556013fbdb561dcd929 310 Gene3D G3DSA:1.10.3720.10 66 306 2.8E-56 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1827 37531d42b71f4556013fbdb561dcd929 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 301 1.3E-11 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0159 60cdfca1307138fbb9e287b091e5f86e 365 Gene3D G3DSA:3.40.50.2300 36 292 4.5E-128 T 31-10-2018 Y89_0159 60cdfca1307138fbb9e287b091e5f86e 365 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 36 302 2.0E-52 T 31-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Y89_0159 60cdfca1307138fbb9e287b091e5f86e 365 Gene3D G3DSA:3.40.50.2300 139 355 4.5E-128 T 31-10-2018 Y89_0159 60cdfca1307138fbb9e287b091e5f86e 365 SUPERFAMILY SSF53822 174 245 5.18E-5 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_1816 545fc42df5c159a7e61ee90a3a9b6bf2 209 Pfam PF01300 Telomere recombination 22 198 1.9E-44 T 31-10-2018 IPR006070 YrdC-like domain GO:0003725 Y89_1816 545fc42df5c159a7e61ee90a3a9b6bf2 209 Gene3D G3DSA:3.90.870.10 1 206 1.3E-63 T 31-10-2018 Y89_1816 545fc42df5c159a7e61ee90a3a9b6bf2 209 SUPERFAMILY SSF55821 1 204 3.05E-63 T 31-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Y89_1816 545fc42df5c159a7e61ee90a3a9b6bf2 209 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 2.8E-62 T 31-10-2018 IPR006070 YrdC-like domain GO:0003725 Y89_3030 4bfcd54202e256477b695dc420ae8820 347 SUPERFAMILY SSF53098 141 298 8.04E-17 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3030 4bfcd54202e256477b695dc420ae8820 347 Pfam PF13565 Homeodomain-like domain 46 119 7.2E-10 T 31-10-2018 Y89_3030 4bfcd54202e256477b695dc420ae8820 347 Gene3D G3DSA:3.30.420.10 136 310 3.1E-10 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3030 4bfcd54202e256477b695dc420ae8820 347 Pfam PF00665 Integrase core domain 145 266 1.5E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_3030 4bfcd54202e256477b695dc420ae8820 347 SUPERFAMILY SSF46689 5 123 1.77E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 SUPERFAMILY SSF48557 7 465 1.31E-144 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.20.200.10 144 412 1.5E-110 T 31-10-2018 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 8 467 1.7E-206 T 31-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 Pfam PF00206 Lyase 15 347 4.1E-97 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 Pfam PF10415 Fumarase C C-terminus 413 465 3.1E-19 T 31-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.10.40.30 413 464 6.4E-19 T 31-10-2018 Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 1.9E-28 T 31-10-2018 IPR000362 Fumarate lyase family Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 1.9E-28 T 31-10-2018 IPR000362 Fumarate lyase family Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 1.9E-28 T 31-10-2018 IPR000362 Fumarate lyase family Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 1.9E-28 T 31-10-2018 IPR000362 Fumarate lyase family Y89_6168 a4bdbb1007e4faeaba40299645b7c143 474 Gene3D G3DSA:1.10.275.10 5 143 3.2E-58 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_4330 224226438418e7a6f3431599c07dc451 416 Pfam PF03573 outer membrane porin, OprD family 23 414 3.0E-158 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4330 224226438418e7a6f3431599c07dc451 416 Gene3D G3DSA:2.40.160.10 18 416 4.0E-182 T 31-10-2018 IPR023614 Porin domain superfamily Y89_4827 3eb378ec05594a232de620b536017226 494 SUPERFAMILY SSF75304 13 484 2.62E-126 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4827 3eb378ec05594a232de620b536017226 494 Pfam PF01425 Amidase 35 466 8.0E-89 T 31-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4827 3eb378ec05594a232de620b536017226 494 Gene3D G3DSA:3.90.1300.10 8 487 3.2E-135 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 Hamap MF_00201 DNA repair protein RecO [recO]. 3 228 19.615 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 Gene3D G3DSA:1.20.1440.120 78 232 6.5E-51 T 31-10-2018 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 Pfam PF02565 Recombination protein O C terminal 80 222 7.0E-23 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 Gene3D G3DSA:2.40.50.140 4 75 2.7E-21 T 31-10-2018 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 Pfam PF11967 Recombination protein O N terminal 7 73 2.5E-15 T 31-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 SUPERFAMILY SSF57863 84 142 1.7E-8 T 31-10-2018 IPR037278 ARFGAP/RecO-like zinc finger Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 TIGRFAM TIGR00613 reco: DNA repair protein RecO 11 145 9.7E-19 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Y89_4586 116013059469cdde61ce6cf83c8f2fb9 233 SUPERFAMILY SSF50249 10 73 1.88E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 SMART SM01358 37 292 2.9E-35 T 31-10-2018 IPR032255 Helical bimodular sensor domain Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 541 1.1E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 1.1E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 483 510 1.1E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 Pfam PF16591 Helical bimodular sensor domain 47 286 1.2E-41 T 31-10-2018 IPR032255 Helical bimodular sensor domain Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 613 1.3E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 Gene3D G3DSA:1.10.287.950 313 647 1.4E-80 T 31-10-2018 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 Pfam PF00672 HAMP domain 314 367 4.4E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 SUPERFAMILY SSF58104 343 647 1.31E-78 T 31-10-2018 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 Gene3D G3DSA:1.20.1440.210 130 249 6.1E-37 T 31-10-2018 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 SMART SM00304 377 423 21.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 SMART SM00304 314 370 8.7E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5744 be27e7962563a09364caa1b0a7f914f8 647 SMART SM00283 385 646 1.1E-84 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 Gene3D G3DSA:2.30.330.10 67 157 2.4E-34 T 31-10-2018 IPR036429 SpoA-like superfamily Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 110 123 2.6E-28 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 77 93 2.6E-28 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 94 110 2.6E-28 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 PRINTS PR00956 Flagellar motor switch protein FliN signature 123 138 2.6E-28 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 74 149 3.3E-33 T 31-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 SUPERFAMILY SSF101801 74 155 1.2E-25 T 31-10-2018 IPR036429 SpoA-like superfamily Y89_3895 6a3863419ff7d96e882de88b4e0339cb 157 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 78 147 6.6E-25 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) Y89_3894 95e2f68a34a36c6cfd233e206404abf4 150 Pfam PF04347 Flagellar biosynthesis protein, FliO 63 142 1.1E-19 T 31-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Y89_3894 95e2f68a34a36c6cfd233e206404abf4 150 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 51 118 1.9E-22 T 31-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 Gene3D G3DSA:3.40.47.10 125 396 4.3E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 Gene3D G3DSA:3.40.47.10 6 298 4.3E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 SUPERFAMILY SSF53901 3 278 3.84E-62 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 PIRSF PIRSF000429 1 401 1.6E-113 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 Pfam PF00108 Thiolase, N-terminal domain 5 270 1.6E-46 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 SUPERFAMILY SSF53901 280 400 5.07E-44 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.1E-130 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_3596 0c26ea812f807103b7c1b8963392e9cf 401 Pfam PF02803 Thiolase, C-terminal domain 279 400 2.6E-47 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_1559 76b43c29de39b5e240722975b8412429 249 SUPERFAMILY SSF52540 5 232 6.62E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1559 76b43c29de39b5e240722975b8412429 249 Gene3D G3DSA:3.40.50.300 2 237 7.2E-58 T 31-10-2018 Y89_1559 76b43c29de39b5e240722975b8412429 249 Pfam PF00005 ABC transporter 20 160 5.4E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1559 76b43c29de39b5e240722975b8412429 249 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1559 76b43c29de39b5e240722975b8412429 249 SMART SM00382 29 211 7.0E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 262 7.4E-104 T 31-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 Pfam PF02735 Ku70/Ku80 beta-barrel domain 12 193 2.1E-34 T 31-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 PIRSF PIRSF006493 1 292 4.0E-106 T 31-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 Gene3D G3DSA:2.40.290.10 3 181 1.2E-17 T 31-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 SMART SM00559 53 181 6.6E-49 T 31-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 260 32.198 T 31-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type Y89_3126 ff71d1aea23edeb645baf88b1c7bc64f 293 SUPERFAMILY SSF100939 2 259 1.2E-51 T 31-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily Y89_1435 251bb510252cc20909965f452aeee4b9 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 262 8.3E-68 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_1435 251bb510252cc20909965f452aeee4b9 265 SUPERFAMILY SSF52096 10 263 5.86E-84 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1435 251bb510252cc20909965f452aeee4b9 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_1435 251bb510252cc20909965f452aeee4b9 265 Gene3D G3DSA:3.90.226.10 8 207 2.9E-68 T 31-10-2018 Y89_1435 251bb510252cc20909965f452aeee4b9 265 Gene3D G3DSA:1.10.12.10 208 264 1.3E-22 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_5383 72c69b8a89513a0de9813425ca444d65 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.7E-125 T 31-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Y89_5383 72c69b8a89513a0de9813425ca444d65 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 75.027 T 31-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 Y89_5383 72c69b8a89513a0de9813425ca444d65 381 Gene3D G3DSA:3.20.20.70 3 379 2.2E-125 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5383 72c69b8a89513a0de9813425ca444d65 381 PIRSF PIRSF000138 2 379 2.6E-122 T 31-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Y89_5383 72c69b8a89513a0de9813425ca444d65 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 31-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Y89_5383 72c69b8a89513a0de9813425ca444d65 381 SUPERFAMILY SSF51395 7 374 2.56E-98 T 31-10-2018 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 SUPERFAMILY SSF56954 6 471 2.09E-81 T 31-10-2018 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 44 468 2.0E-73 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 Pfam PF02321 Outer membrane efflux protein 63 256 2.7E-21 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 Pfam PF02321 Outer membrane efflux protein 288 466 8.1E-15 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 Gene3D G3DSA:2.20.200.10 100 357 3.8E-98 T 31-10-2018 Y89_4115 ea6a99d96ecb07f7503b37bdbb466077 482 Gene3D G3DSA:1.20.1600.10 53 469 3.8E-98 T 31-10-2018 Y89_5936 169850e97fa852a8638ebb961520de2d 652 SUPERFAMILY SSF46626 138 242 4.44E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5936 169850e97fa852a8638ebb961520de2d 652 Pfam PF03239 Iron permease FTR1 family 361 494 3.0E-12 T 31-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 Y89_5936 169850e97fa852a8638ebb961520de2d 652 Gene3D G3DSA:1.10.760.10 122 241 1.2E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5936 169850e97fa852a8638ebb961520de2d 652 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 149 232 1.4E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2355 36b6ad94832d6b315f3c5eefee36ca59 126 Gene3D G3DSA:1.10.287.1080 9 118 9.4E-37 T 31-10-2018 Y89_2355 36b6ad94832d6b315f3c5eefee36ca59 126 Pfam PF12643 MazG-like family 44 125 8.8E-17 T 31-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y89_2355 36b6ad94832d6b315f3c5eefee36ca59 126 PIRSF PIRSF029826 4 126 8.7E-48 T 31-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Y89_2355 36b6ad94832d6b315f3c5eefee36ca59 126 SUPERFAMILY SSF101386 8 125 3.27E-35 T 31-10-2018 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 368 386 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 207 232 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 327 352 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 143 169 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 258 277 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 177 203 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PRINTS PR00083 Histidinol dehydrogenase signature 236 257 2.7E-88 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 Pfam PF00815 Histidinol dehydrogenase 30 433 2.0E-168 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 Gene3D G3DSA:3.40.50.1980 240 356 1.9E-129 T 31-10-2018 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 SUPERFAMILY SSF53720 33 434 4.51E-86 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 433 2.1E-160 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 434 40.702 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 Gene3D G3DSA:3.40.50.1980 36 238 1.9E-129 T 31-10-2018 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 PIRSF PIRSF000099 8 436 1.8E-158 T 31-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Y89_4937 6ae1ffffe70d8304bcf73ade3b1e03bf 440 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 236 268 - T 31-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Y89_5482 3ea09992246329478a3a842ef7a2a570 229 PIRSF PIRSF028111 1 229 3.4E-87 T 31-10-2018 IPR016868 Bacteriophage B3, Orf5 Y89_5482 3ea09992246329478a3a842ef7a2a570 229 Pfam PF10979 Protein of unknown function (DUF2786) 5 45 3.8E-15 T 31-10-2018 IPR024498 Domain of unknown function DUF2786 Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 Pfam PF03466 LysR substrate binding domain 99 301 4.6E-27 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 Gene3D G3DSA:3.40.190.290 103 309 1.7E-14 T 31-10-2018 Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 SUPERFAMILY SSF46785 12 97 1.5E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 Gene3D G3DSA:1.10.10.10 12 100 7.7E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 SUPERFAMILY SSF53850 104 306 4.71E-25 T 31-10-2018 Y89_0307 12d43b9e77a402f3b5520964a96903d4 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 3.7E-14 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 469 482 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 281 294 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 205 220 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 267 280 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 191 204 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 162 170 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 407 418 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 138 151 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 PRINTS PR00415 Aconitase family signature 360 374 1.4E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 SUPERFAMILY SSF52016 603 862 7.85E-68 T 31-10-2018 Y89_4563 de92b8352764079aa52b115cd2119271 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 864 0.0 T 31-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 Y89_4563 de92b8352764079aa52b115cd2119271 868 Pfam PF00694 Aconitase C-terminal domain 661 792 3.7E-30 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:1.10.1440.20 566 623 1.7E-7 T 31-10-2018 Y89_4563 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.20.19.10 624 863 1.5E-82 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 Pfam PF00330 Aconitase family (aconitate hydratase) 70 538 5.0E-149 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.30.499.10 361 565 2.5E-75 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 SUPERFAMILY SSF53732 23 591 2.22E-184 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Y89_4563 de92b8352764079aa52b115cd2119271 868 Gene3D G3DSA:3.30.499.20 10 360 3.1E-132 T 31-10-2018 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 363 7.9E-22 T 31-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 SUPERFAMILY SSF103025 6 286 7.22E-92 T 31-10-2018 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:3.30.1360.120 8 234 3.1E-85 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 SUPERFAMILY SSF101790 278 372 8.5E-25 T 31-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 257 8.3E-91 T 31-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:2.40.30.110 285 361 4.8E-26 T 31-10-2018 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 PIRSF PIRSF006487 1 373 8.3E-83 T 31-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:4.10.1250.10 235 283 1.5E-20 T 31-10-2018 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 Gene3D G3DSA:3.30.70.1400 57 142 3.1E-85 T 31-10-2018 Y89_2756 a6e99e756ab1c7a1913d7d9eae3e5b6b 373 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 7 367 1.5E-107 T 31-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Y89_2835 b7fd75fc5e5954ee0bfc6e795c451a20 181 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 10 160 4.8E-54 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_2835 b7fd75fc5e5954ee0bfc6e795c451a20 181 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 163 1.9E-58 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_2835 b7fd75fc5e5954ee0bfc6e795c451a20 181 PIRSF PIRSF028301 1 175 7.8E-65 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 Pfam PF12951 Passenger-associated-transport-repeat 456 485 5.8E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 SUPERFAMILY SSF52743 49 369 1.31E-59 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 118 131 9.2E-17 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 305 321 9.2E-17 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 PRINTS PR00723 Subtilisin serine protease family (S8) signature 70 89 9.2E-17 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 306 316 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 SUPERFAMILY SSF103515 681 995 3.79E-67 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 Gene3D G3DSA:3.40.50.200 30 369 3.6E-60 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 Pfam PF03797 Autotransporter beta-domain 723 975 3.2E-56 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 Pfam PF00082 Subtilase family 70 359 6.4E-38 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 521 995 1.2E-49 T 31-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 SMART SM00869 719 985 1.2E-53 T 31-10-2018 IPR005546 Autotransporter beta-domain Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 122 132 - T 31-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 Gene3D G3DSA:2.40.128.130 673 995 2.0E-68 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily Y89_1492 fe0e1f3126765f94c9130e25bc1aeac7 995 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 455 485 8.6E-11 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat Y89_1994 bc398fa4c3f5b997128284f159454483 526 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 417 505 1.7E-13 T 31-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 Pfam PF01266 FAD dependent oxidoreductase 23 345 5.4E-49 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 334 340 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 63 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 365 377 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 45 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 34 2.0E-22 T 31-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 Gene3D G3DSA:3.50.50.60 20 377 7.0E-113 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1994 bc398fa4c3f5b997128284f159454483 526 Gene3D G3DSA:1.10.8.870 412 523 4.1E-21 T 31-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Y89_1994 bc398fa4c3f5b997128284f159454483 526 SUPERFAMILY SSF51905 22 345 3.78E-33 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1994 bc398fa4c3f5b997128284f159454483 526 Gene3D G3DSA:3.30.9.10 104 341 7.0E-113 T 31-10-2018 Y89_0012 68343af7874fd45b80547b0262af8705 178 Gene3D G3DSA:3.40.50.1000 4 178 4.1E-52 T 31-10-2018 IPR023214 HAD superfamily Y89_0012 68343af7874fd45b80547b0262af8705 178 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 147 1.8E-43 T 31-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Y89_0012 68343af7874fd45b80547b0262af8705 178 PIRSF PIRSF004682 1 174 1.2E-53 T 31-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Y89_0012 68343af7874fd45b80547b0262af8705 178 SUPERFAMILY SSF56784 2 177 3.39E-46 T 31-10-2018 IPR036412 HAD-like superfamily Y89_0012 68343af7874fd45b80547b0262af8705 178 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 148 4.8E-35 T 31-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Y89_0012 68343af7874fd45b80547b0262af8705 178 Pfam PF13242 HAD-hyrolase-like 101 170 2.9E-12 T 31-10-2018 Y89_0556 75b887a770d5c7532b5e41d29cf5ad66 429 Gene3D G3DSA:3.50.50.60 35 386 1.5E-64 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0556 75b887a770d5c7532b5e41d29cf5ad66 429 Gene3D G3DSA:3.30.9.10 126 349 1.5E-64 T 31-10-2018 Y89_0556 75b887a770d5c7532b5e41d29cf5ad66 429 SUPERFAMILY SSF51905 33 335 1.74E-42 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0556 75b887a770d5c7532b5e41d29cf5ad66 429 Pfam PF01266 FAD dependent oxidoreductase 35 385 2.2E-53 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_1620 ba7b278d68e8d1fa807bf9b0d7bede70 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 74 4.9E-19 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_1620 ba7b278d68e8d1fa807bf9b0d7bede70 100 Gene3D G3DSA:3.30.70.100 1 97 6.2E-25 T 31-10-2018 Y89_1620 ba7b278d68e8d1fa807bf9b0d7bede70 100 SUPERFAMILY SSF54909 3 89 4.6E-23 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_4595 83e31d4118eb4d4360df8fb5e4d0b54e 194 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 7 75 3.0E-16 T 31-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 Y89_4595 83e31d4118eb4d4360df8fb5e4d0b54e 194 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 122 175 1.3E-11 T 31-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal Y89_4595 83e31d4118eb4d4360df8fb5e4d0b54e 194 SUPERFAMILY SSF89069 6 72 7.32E-14 T 31-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Y89_4595 83e31d4118eb4d4360df8fb5e4d0b54e 194 Gene3D G3DSA:1.10.10.880 6 72 1.0E-16 T 31-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Y89_4434 3a15ffd8a91c2d05a56b933d295200bb 135 Pfam PF03724 META domain 28 129 2.9E-27 T 31-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ Y89_4434 3a15ffd8a91c2d05a56b933d295200bb 135 Gene3D G3DSA:2.40.128.270 18 132 5.0E-22 T 31-10-2018 IPR038670 HslJ-like superfamily Y89_0681 66d94483da397e4f92f50c44fae48e39 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 4.6E-99 T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 SUPERFAMILY SSF51366 4 217 7.85E-76 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 Gene3D G3DSA:3.20.20.70 4 221 2.2E-84 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 PIRSF PIRSF001461 1 224 7.7E-103 T 31-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.9E-89 T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y89_0681 66d94483da397e4f92f50c44fae48e39 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 SMART SM00862 146 221 2.4E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 Gene3D G3DSA:3.40.50.2300 1 121 2.0E-39 T 31-10-2018 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.0E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 Pfam PF00072 Response regulator receiver domain 4 112 3.6E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 SMART SM00448 1 112 8.3E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 Gene3D G3DSA:1.10.10.10 124 226 2.2E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2220 f20a3afdb13caf86854e110b32fab366 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 5.7E-103 T 31-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y89_2220 f20a3afdb13caf86854e110b32fab366 226 SUPERFAMILY SSF52172 1 175 1.36E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1873 72667453dc3b58989eca91c79556dac4 373 SUPERFAMILY SSF51182 245 364 4.02E-20 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1873 72667453dc3b58989eca91c79556dac4 373 Gene3D G3DSA:2.60.120.10 250 366 5.3E-28 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1873 72667453dc3b58989eca91c79556dac4 373 Gene3D G3DSA:3.40.50.720 1 248 2.8E-79 T 31-10-2018 Y89_1873 72667453dc3b58989eca91c79556dac4 373 SUPERFAMILY SSF51735 1 235 3.98E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1873 72667453dc3b58989eca91c79556dac4 373 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 189 9.4E-20 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_0886 66e1210131dab05d62a945e76666c137 402 Gene3D G3DSA:1.20.1720.10 17 394 1.2E-103 T 31-10-2018 Y89_0886 66e1210131dab05d62a945e76666c137 402 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 392 2.2E-93 T 31-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 Y89_0886 66e1210131dab05d62a945e76666c137 402 SUPERFAMILY SSF103473 10 397 2.09E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0886 66e1210131dab05d62a945e76666c137 402 Pfam PF07690 Major Facilitator Superfamily 25 351 2.3E-40 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.450.20 59 181 1.8E-73 T 31-10-2018 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.450.20 46 287 1.8E-73 T 31-10-2018 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF55874 433 579 9.3E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 430 9.4E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 525 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 539 5.2E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 579 1.8E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_6252 65d28635d04ae756420d229c8c8fc139 588 PIRSF PIRSF036431 1 588 1.2E-192 T 31-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Y89_6252 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF47384 358 431 1.96E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:1.10.287.130 340 425 3.3E-16 T 31-10-2018 Y89_6252 65d28635d04ae756420d229c8c8fc139 588 Gene3D G3DSA:3.30.565.10 432 585 4.4E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6252 65d28635d04ae756420d229c8c8fc139 588 SUPERFAMILY SSF103190 108 193 1.16E-13 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_6252 65d28635d04ae756420d229c8c8fc139 588 SMART SM00387 472 581 1.0E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_6252 65d28635d04ae756420d229c8c8fc139 588 SMART SM00388 362 430 3.2E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1596 938203e31e7f5c34d86c680a7c502c90 89 Pfam PF10976 Protein of unknown function (DUF2790) 10 87 4.1E-26 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_1596 938203e31e7f5c34d86c680a7c502c90 89 Gene3D G3DSA:2.30.140.50 19 89 4.8E-23 T 31-10-2018 Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 Pfam PF00106 short chain dehydrogenase 3 184 8.3E-43 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 Gene3D G3DSA:3.40.50.720 2 223 5.1E-55 T 31-10-2018 Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 4.7E-19 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.7E-19 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 4.7E-19 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.7E-19 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 4.7E-19 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 166 0.0017 T 31-10-2018 Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 8.2E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 8.2E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 8.2E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3175 8ae87c7e3c4a1f279afe97318ab8188e 252 SUPERFAMILY SSF51735 3 246 1.57E-58 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6298 9dadd1e6e5ceeff5a57ce01c758673be 156 Gene3D G3DSA:1.20.5.620 62 122 1.9E-17 T 31-10-2018 Y89_6298 9dadd1e6e5ceeff5a57ce01c758673be 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 4.9E-48 T 31-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 Y89_6298 9dadd1e6e5ceeff5a57ce01c758673be 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 2.0E-37 T 31-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y89_6298 9dadd1e6e5ceeff5a57ce01c758673be 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.008 T 31-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Y89_6298 9dadd1e6e5ceeff5a57ce01c758673be 156 SUPERFAMILY SSF81573 63 121 1.15E-14 T 31-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Y89_0952 3acb9b74607569f0d2cd6c6e8ea04a05 496 Pfam PF13520 Amino acid permease 16 427 9.2E-32 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_0952 3acb9b74607569f0d2cd6c6e8ea04a05 496 PIRSF PIRSF006060 1 487 1.4E-65 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_0952 3acb9b74607569f0d2cd6c6e8ea04a05 496 Gene3D G3DSA:1.20.1740.10 12 463 1.0E-44 T 31-10-2018 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 SUPERFAMILY SSF53732 5 645 4.05E-227 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 450 461 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 372 386 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 279 292 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 170 178 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 293 306 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 512 525 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 203 216 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 146 159 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 PRINTS PR00415 Aconitase family signature 217 232 7.7E-42 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.30.499.10 373 609 1.1E-101 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 SUPERFAMILY SSF52016 649 909 1.1E-90 T 31-10-2018 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 ProSitePatterns PS00450 Aconitase family signature 1. 446 462 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:1.10.1440.20 610 669 2.3E-19 T 31-10-2018 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Pfam PF00694 Aconitase C-terminal domain 710 837 1.0E-49 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 ProSitePatterns PS01244 Aconitase family signature 2. 512 525 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 910 0.0 T 31-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.30.499.20 6 372 2.7E-160 T 31-10-2018 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Pfam PF00330 Aconitase family (aconitate hydratase) 75 581 1.2E-182 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Y89_3774 964d627e054e29855550e20ce3d9b3f5 910 Gene3D G3DSA:3.20.19.10 672 910 2.0E-110 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Y89_3424 6998a8da09d1ef242a94cb325fb7ce2a 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 15 162 5.0E-85 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_3424 6998a8da09d1ef242a94cb325fb7ce2a 162 Pfam PF03284 Phenazine biosynthesis protein A/B 10 162 8.4E-91 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_3424 6998a8da09d1ef242a94cb325fb7ce2a 162 SUPERFAMILY SSF54427 19 148 9.83E-25 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3424 6998a8da09d1ef242a94cb325fb7ce2a 162 Gene3D G3DSA:3.10.450.50 12 152 5.9E-48 T 31-10-2018 Y89_1647 102ccf765410a0a864391cc3f28167b2 172 Pfam PF02293 AmiS/UreI family transporter 2 168 2.2E-56 T 31-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 Y89_1647 102ccf765410a0a864391cc3f28167b2 172 Gene3D G3DSA:1.25.40.600 2 170 6.9E-47 T 31-10-2018 IPR038523 AmiS/UreI transporter superfamily Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 Gene3D G3DSA:3.40.50.720 2 257 3.3E-76 T 31-10-2018 Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 SUPERFAMILY SSF51735 9 253 2.08E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.0E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 2.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 2.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 2.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 251 9.9E-60 T 31-10-2018 Y89_6264 b72f4721f84524ad9f5bd2876163df53 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 201 0.0053 T 31-10-2018 Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 Hamap MF_00163 Peptide deformylase [def]. 1 172 27.724 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 Gene3D G3DSA:3.90.45.10 1 179 1.7E-64 T 31-10-2018 IPR036821 Peptide deformylase superfamily Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 PIRSF PIRSF004749 1 172 2.7E-47 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 8.1E-35 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 Pfam PF01327 Polypeptide deformylase 3 160 3.8E-47 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 111 129 1.5E-31 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 130 159 1.5E-31 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 99 110 1.5E-31 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 PRINTS PR01576 Peptide deformylase signature 35 64 1.5E-31 T 31-10-2018 IPR023635 Peptide deformylase Y89_4230 ba296b9bb8ae459bc205d02f8ba8905c 179 SUPERFAMILY SSF56420 1 167 3.4E-57 T 31-10-2018 IPR036821 Peptide deformylase superfamily Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.6E-27 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 SUPERFAMILY SSF50249 1 65 2.4E-22 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 67 6.5E-38 T 31-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 SMART SM00357 3 67 3.9E-23 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 25 34 1.6E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 4 19 1.6E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 PRINTS PR00050 Cold shock protein signature 40 58 1.6E-15 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 Gene3D G3DSA:2.40.50.140 1 65 5.9E-25 T 31-10-2018 Y89_2466 369e4e9b07834af497b8a61b3a4a6c1a 90 PIRSF PIRSF002599 1 84 2.7E-22 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 Y89_5336 3537310801f299672f09a2f82e7d1804 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 8 108 9.0E-30 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 123 230 3.0E-16 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 5 289 44.057 T 31-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Y89_5336 3537310801f299672f09a2f82e7d1804 293 Gene3D G3DSA:3.40.50.620 5 283 1.4E-107 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5336 3537310801f299672f09a2f82e7d1804 293 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 5 269 4.0E-110 T 31-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Y89_5336 3537310801f299672f09a2f82e7d1804 293 SUPERFAMILY SSF52374 5 284 4.02E-88 T 31-10-2018 Y89_5336 3537310801f299672f09a2f82e7d1804 293 Gene3D G3DSA:3.40.50.620 80 217 1.4E-107 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5336 3537310801f299672f09a2f82e7d1804 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 6.5E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 169 179 6.5E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 185 193 6.5E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 6.5E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_5336 3537310801f299672f09a2f82e7d1804 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 6.5E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 SMART SM00342 253 335 8.5E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 319 6.9E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 319 335 6.9E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 26 210 3.4E-44 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 Gene3D G3DSA:1.10.10.60 237 342 1.2E-22 T 31-10-2018 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 289 331 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 SUPERFAMILY SSF46689 288 339 5.82E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3178 07a493a52361a7f947fc0b8a9ce4a8c6 344 Pfam PF12833 Helix-turn-helix domain 259 337 6.7E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4261 04ef81cf3bed30120a3e542ea698ad3c 123 Gene3D G3DSA:3.30.160.170 35 118 6.7E-14 T 31-10-2018 IPR035924 FlaG-like superfamily Y89_4261 04ef81cf3bed30120a3e542ea698ad3c 123 Pfam PF03646 FlaG protein 43 120 2.8E-23 T 31-10-2018 IPR005186 FlaG protein Y89_4261 04ef81cf3bed30120a3e542ea698ad3c 123 SUPERFAMILY SSF160214 44 122 1.44E-23 T 31-10-2018 IPR035924 FlaG-like superfamily Y89_2478 1f5800f9181f00855441345a4ef637d0 324 Pfam PF13410 Glutathione S-transferase, C-terminal domain 193 264 1.3E-13 T 31-10-2018 Y89_2478 1f5800f9181f00855441345a4ef637d0 324 SUPERFAMILY SSF47616 172 314 9.61E-37 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_2478 1f5800f9181f00855441345a4ef637d0 324 PIRSF PIRSF015753 3 313 5.2E-130 T 31-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 Y89_2478 1f5800f9181f00855441345a4ef637d0 324 SUPERFAMILY SSF52833 35 151 3.57E-14 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2478 1f5800f9181f00855441345a4ef637d0 324 Pfam PF13409 Glutathione S-transferase, N-terminal domain 52 147 7.2E-22 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_2478 1f5800f9181f00855441345a4ef637d0 324 Gene3D G3DSA:3.40.30.130 1 165 1.4E-65 T 31-10-2018 Y89_2478 1f5800f9181f00855441345a4ef637d0 324 Gene3D G3DSA:1.20.1050.10 168 320 8.9E-68 T 31-10-2018 Y89_1069 c2f3fb7b4c7bb88d2148c24877fc460c 364 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 8 356 1.6E-193 T 31-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 Y89_1069 c2f3fb7b4c7bb88d2148c24877fc460c 364 Gene3D G3DSA:3.20.20.30 4 359 2.7E-109 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_1069 c2f3fb7b4c7bb88d2148c24877fc460c 364 SUPERFAMILY SSF51679 5 355 1.14E-94 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_1069 c2f3fb7b4c7bb88d2148c24877fc460c 364 Pfam PF00296 Luciferase-like monooxygenase 9 328 3.5E-78 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 SUPERFAMILY SSF81330 13 127 1.7E-35 T 31-10-2018 IPR036019 Gated mechanosensitive channel Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Gene3D G3DSA:1.10.1200.120 3 134 7.8E-42 T 31-10-2018 IPR036019 Gated mechanosensitive channel Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 7.3E-45 T 31-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 4 133 6.0E-48 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 9.2E-13 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 9.2E-13 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 9.2E-13 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 132 24.315 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Y89_5222 3cd39cbf09a56d5ff3cc80ec121ad9f4 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 31-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site Y89_6054 1fccd6e3293b7cee4f3434398a7ff5c1 78 Gene3D G3DSA:2.30.170.40 2 78 1.0E-34 T 31-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6054 1fccd6e3293b7cee4f3434398a7ff5c1 78 SUPERFAMILY SSF143800 2 77 1.67E-31 T 31-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6054 1fccd6e3293b7cee4f3434398a7ff5c1 78 Pfam PF00830 Ribosomal L28 family 3 61 1.2E-28 T 31-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_6054 1fccd6e3293b7cee4f3434398a7ff5c1 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 22.188 T 31-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_6054 1fccd6e3293b7cee4f3434398a7ff5c1 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.5E-29 T 31-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 231 796 2.6E-139 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:3.40.1110.10 519 626 5.4E-64 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF55008 87 164 6.68E-17 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:2.70.150.20 304 415 1.4E-30 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF81665 262 501 4.71E-8 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF81653 323 409 3.4E-22 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00122 E1-E2 ATPase 310 487 1.0E-47 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00403 Heavy-metal-associated domain 97 156 1.1E-8 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 276 797 4.6E-113 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Pfam PF00702 haloacid dehalogenase-like hydrolase 504 708 8.9E-33 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 7 89 5.4E-28 T 31-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase Y89_3789 bf4462705c959555b24ae6b6e846b468 811 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 510 516 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:3.30.70.100 88 159 6.8E-12 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 284 772 7.7E-68 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 97 106 4.7E-5 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 376 392 4.7E-5 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00941 Cadmium-transporting ATPase signature 108 129 4.7E-5 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 651 5.0E-21 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 729 5.0E-21 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 694 713 5.0E-21 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 508 522 5.0E-21 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 360 374 5.0E-21 T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 SUPERFAMILY SSF56784 506 794 3.49E-50 T 31-10-2018 IPR036412 HAD-like superfamily Y89_3789 bf4462705c959555b24ae6b6e846b468 811 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 248 796 2.8E-154 T 31-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 ProSitePatterns PS01229 Hypothetical cof family signature 2. 694 716 - T 31-10-2018 Y89_3789 bf4462705c959555b24ae6b6e846b468 811 Gene3D G3DSA:3.40.50.1000 489 746 5.4E-64 T 31-10-2018 IPR023214 HAD superfamily Y89_2356 85fb0648d67dbdbcdb7ea96a2e66fbd9 73 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 12 70 1.0E-14 T 31-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 Y89_0975 ab281e63b3e051bb1fdf8354cc93afb5 248 Gene3D G3DSA:3.40.190.10 36 233 1.9E-11 T 31-10-2018 Y89_0975 ab281e63b3e051bb1fdf8354cc93afb5 248 SUPERFAMILY SSF53850 26 234 5.61E-28 T 31-10-2018 Y89_0975 ab281e63b3e051bb1fdf8354cc93afb5 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 233 1.6E-10 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0975 ab281e63b3e051bb1fdf8354cc93afb5 248 Gene3D G3DSA:3.40.190.10 104 193 1.9E-11 T 31-10-2018 Y89_2608 7aa89dd996538139cbbda9db43970899 288 Gene3D G3DSA:1.20.58.480 29 288 2.4E-99 T 31-10-2018 Y89_2608 7aa89dd996538139cbbda9db43970899 288 Pfam PF03301 Tryptophan 2,3-dioxygenase 21 212 2.9E-42 T 31-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 Y89_2608 7aa89dd996538139cbbda9db43970899 288 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 25 288 7.0E-129 T 31-10-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 Y89_2608 7aa89dd996538139cbbda9db43970899 288 SUPERFAMILY SSF140959 31 287 4.05E-100 T 31-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 Y89_2608 7aa89dd996538139cbbda9db43970899 288 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 25 288 40.526 T 31-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 Pfam PF00455 DeoR C terminal sensor domain 75 231 2.8E-53 T 31-10-2018 IPR014036 DeoR C-terminal sensor domain Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.0E-21 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.9E-12 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.9E-12 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 SUPERFAMILY SSF100950 74 232 4.95E-31 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 SMART SM01134 72 232 2.3E-72 T 31-10-2018 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 Gene3D G3DSA:1.10.10.10 1 55 2.8E-8 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 SUPERFAMILY SSF46785 3 68 2.46E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 31-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 Gene3D G3DSA:3.30.750.70 68 131 4.8E-8 T 31-10-2018 Y89_1443 26da6b4f0ec1b2dbc7986512057e689f 251 SMART SM00420 6 58 3.9E-22 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_3013 0cded58a57021efd89fc0d79132e1d20 355 Pfam PF01757 Acyltransferase family 7 322 1.8E-25 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Y89_5661 2a2849bf48305bd614748f17da4d9384 110 Gene3D G3DSA:1.10.3730.20 1 110 4.0E-34 T 31-10-2018 Y89_5661 2a2849bf48305bd614748f17da4d9384 110 SUPERFAMILY SSF103481 6 106 1.16E-19 T 31-10-2018 Y89_5661 2a2849bf48305bd614748f17da4d9384 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 1.1E-24 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 Gene3D G3DSA:1.10.1740.10 4 82 2.2E-13 T 31-10-2018 Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 Pfam PF08281 Sigma-70, region 4 112 162 2.0E-18 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 Pfam PF04542 Sigma-70 region 2 13 80 2.8E-13 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 Gene3D G3DSA:1.10.10.10 95 170 3.4E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 SUPERFAMILY SSF88946 8 85 4.71E-17 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 SUPERFAMILY SSF88659 96 169 4.58E-15 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_1598 9b2e82534227e4b1fb69443ba4f953b3 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 166 9.2E-27 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 15 324 3.6E-90 T 31-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 Gene3D G3DSA:3.30.930.10 5 333 5.4E-75 T 31-10-2018 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 SUPERFAMILY SSF55681 7 324 2.99E-60 T 31-10-2018 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 Pfam PF13393 Histidyl-tRNA synthetase 12 321 5.2E-118 T 31-10-2018 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 373 34.898 T 31-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Y89_5609 f0518cf69d147f63c2dd1eb12488d6be 394 PIRSF PIRSF001549 7 388 5.9E-48 T 31-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 1.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.4E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 Gene3D G3DSA:3.40.50.720 2 272 2.1E-72 T 31-10-2018 Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 SUPERFAMILY SSF51735 11 268 2.16E-68 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 8.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 8.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 8.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 8.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 Pfam PF00106 short chain dehydrogenase 14 202 7.1E-57 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1066 9ad8df301da8d46832d5b5687dce9134 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 193 8.2E-4 T 31-10-2018 Y89_5392 3e343471a716991b9b12681bb137b087 297 SUPERFAMILY SSF103481 185 282 1.96E-13 T 31-10-2018 Y89_5392 3e343471a716991b9b12681bb137b087 297 Pfam PF00892 EamA-like transporter family 142 280 1.6E-13 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5392 3e343471a716991b9b12681bb137b087 297 Pfam PF00892 EamA-like transporter family 6 130 1.6E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5392 3e343471a716991b9b12681bb137b087 297 SUPERFAMILY SSF103481 39 134 6.8E-11 T 31-10-2018 Y89_4294 a7c5b58ff80e67625684daade06fead7 301 SUPERFAMILY SSF103481 190 291 3.01E-15 T 31-10-2018 Y89_4294 a7c5b58ff80e67625684daade06fead7 301 Pfam PF00892 EamA-like transporter family 153 285 9.9E-26 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_4294 a7c5b58ff80e67625684daade06fead7 301 Pfam PF00892 EamA-like transporter family 9 139 1.5E-26 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_4294 a7c5b58ff80e67625684daade06fead7 301 SUPERFAMILY SSF103481 42 142 6.41E-18 T 31-10-2018 Y89_0471 6976bf187cc251b4cbeb9a8d15dcd435 540 Pfam PF01384 Phosphate transporter family 84 529 2.3E-87 T 31-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 25 92 5.2E-22 T 31-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 5.3E-6 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 201 219 6.8E-4 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 1.4E-6 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Gene3D G3DSA:3.40.1390.10 2 101 3.0E-36 T 31-10-2018 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 11 332 1.7E-117 T 31-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Gene3D G3DSA:2.160.10.10 102 312 1.1E-66 T 31-10-2018 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 SUPERFAMILY SSF51161 35 320 4.87E-80 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1380 49c40263e319a5dc4afab50c58987deb 353 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 12 329 36.318 T 31-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Y89_1380 49c40263e319a5dc4afab50c58987deb 353 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 109 137 - T 31-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y89_1845 f55c8e65921309719a6f98bf0ed14df6 246 SUPERFAMILY SSF53335 26 240 1.04E-51 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1845 f55c8e65921309719a6f98bf0ed14df6 246 Gene3D G3DSA:3.40.50.150 22 245 1.2E-78 T 31-10-2018 Y89_1845 f55c8e65921309719a6f98bf0ed14df6 246 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 22 245 37.5 T 31-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Y89_1845 f55c8e65921309719a6f98bf0ed14df6 246 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 22 239 3.7E-87 T 31-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Y89_1845 f55c8e65921309719a6f98bf0ed14df6 246 Pfam PF13489 Methyltransferase domain 61 213 6.8E-27 T 31-10-2018 Y89_2742 e2f637fe667552ee531383fa32bed89e 321 SUPERFAMILY SSF82171 13 312 1.03E-6 T 31-10-2018 Y89_2742 e2f637fe667552ee531383fa32bed89e 321 Pfam PF05593 RHS Repeat 240 276 4.2E-6 T 31-10-2018 IPR031325 RHS repeat Y89_2742 e2f637fe667552ee531383fa32bed89e 321 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 243 274 7.9E-4 T 31-10-2018 IPR006530 YD repeat Y89_2742 e2f637fe667552ee531383fa32bed89e 321 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 297 320 1.5E-4 T 31-10-2018 IPR006530 YD repeat Y89_2062 ecedde3d1024357d12fc3cab3b29c258 377 Pfam PF00266 Aminotransferase class-V 16 348 2.8E-52 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_2062 ecedde3d1024357d12fc3cab3b29c258 377 SUPERFAMILY SSF53383 7 374 7.98E-81 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2062 ecedde3d1024357d12fc3cab3b29c258 377 Gene3D G3DSA:3.90.1150.10 14 366 1.1E-104 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_2062 ecedde3d1024357d12fc3cab3b29c258 377 Gene3D G3DSA:3.40.640.10 26 283 1.1E-104 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 SUPERFAMILY SSF54593 9 167 2.82E-37 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 12 168 3.9E-51 T 31-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 24 164 1.4E-23 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 ProSitePatterns PS00934 Glyoxalase I signature 1. 26 47 - T 31-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 ProSitePatterns PS00935 Glyoxalase I signature 2. 109 125 - T 31-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Y89_5782 2332afe41d43202663eb4fe2f96612d8 176 Gene3D G3DSA:3.10.180.10 2 169 3.0E-62 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2159 90dd0fc7d26b64faa6ba92676d14f218 340 SUPERFAMILY SSF158855 63 335 1.06E-78 T 31-10-2018 Y89_2159 90dd0fc7d26b64faa6ba92676d14f218 340 Pfam PF03280 Proteobacterial lipase chaperone protein 135 325 1.5E-54 T 31-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 Y89_2159 90dd0fc7d26b64faa6ba92676d14f218 340 Hamap MF_00790 Lipase chaperone [lifO]. 1 333 24.207 T 31-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 Y89_4763 199fc459558baa279f34535397487bc0 471 SUPERFAMILY SSF56672 1 228 3.45E-33 T 31-10-2018 Y89_4763 199fc459558baa279f34535397487bc0 471 Pfam PF00817 impB/mucB/samB family 24 150 6.4E-6 T 31-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 Pfam PF05175 Methyltransferase small domain 94 185 8.6E-15 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 Gene3D G3DSA:1.10.8.10 8 83 1.8E-20 T 31-10-2018 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 SUPERFAMILY SSF53335 12 272 4.33E-52 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 Gene3D G3DSA:3.40.50.150 84 275 3.8E-60 T 31-10-2018 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 18 274 3.3E-77 T 31-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 270 1.2E-88 T 31-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 274 46.278 T 31-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Y89_5275 bdb1f8a437572fe5166970d8fc1a173f 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 SUPERFAMILY SSF48498 82 198 7.53E-12 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 9.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 9.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 93 171 1.6E-8 T 31-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 1.0E-13 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 SUPERFAMILY SSF46689 3 70 1.4E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3302 97956f26a6df1ab2588c2d4ef4c04262 239 Gene3D G3DSA:1.10.357.10 1 210 1.2E-92 T 31-10-2018 Y89_5961 d95f527ba056c8b5d98c6cc9ba9d8900 950 Pfam PF12633 Adenylate cyclase NT domain 21 217 1.5E-71 T 31-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 Y89_5961 d95f527ba056c8b5d98c6cc9ba9d8900 950 PIRSF PIRSF001444 16 931 0.0 T 31-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 Y89_5961 d95f527ba056c8b5d98c6cc9ba9d8900 950 Pfam PF01295 Adenylate cyclase, class-I 244 844 4.4E-120 T 31-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 Y89_2429 42500bdd922b972d40696b9b59b7a585 102 Gene3D G3DSA:3.10.450.40 29 102 2.3E-10 T 31-10-2018 Y89_2429 42500bdd922b972d40696b9b59b7a585 102 Pfam PF03413 Peptidase propeptide and YPEB domain 41 98 1.4E-13 T 31-10-2018 IPR025711 PepSY domain Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 1.3E-35 T 31-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.1E-24 T 31-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 31-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 SUPERFAMILY SSF89360 1 96 1.83E-31 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 Gene3D G3DSA:2.60.300.12 2 107 2.8E-36 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Y89_1214 5100afeb93346c21ace2586330c8ff7e 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 3.0E-53 T 31-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 SMART SM00862 145 216 9.4E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 SUPERFAMILY SSF52172 1 118 3.7E-35 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 214 6.8E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 SUPERFAMILY SSF46894 125 216 8.79E-27 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 Gene3D G3DSA:1.10.10.10 124 218 3.9E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 SMART SM00448 1 112 6.3E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5388 5cc3380263e1afce73d41b7f1a68d138 221 Gene3D G3DSA:3.40.50.2300 1 121 5.0E-36 T 31-10-2018 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Gene3D G3DSA:3.30.750.80 418 509 2.8E-39 T 31-10-2018 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 7 725 33.186 T 31-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Gene3D G3DSA:3.40.50.150 172 379 3.0E-138 T 31-10-2018 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 313 319 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 SMART SM00981 59 157 1.6E-22 T 31-10-2018 IPR004114 THUMP domain GO:0003723 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Pfam PF02926 THUMP domain 45 156 1.1E-11 T 31-10-2018 IPR004114 THUMP domain GO:0003723 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 SUPERFAMILY SSF53335 421 720 1.31E-68 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 SUPERFAMILY SSF53335 143 384 1.16E-38 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Gene3D G3DSA:3.40.50.150 510 725 2.0E-73 T 31-10-2018 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Pfam PF01170 Putative RNA methylase family UPF0020 165 380 1.1E-43 T 31-10-2018 IPR000241 Putative RNA methylase domain Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 504 679 4.2E-19 T 31-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 PIRSF PIRSF037618 2 725 0.0 T 31-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 Y89_1971 1176819e4dbde1622ec6b6ae8068f245 725 Gene3D G3DSA:3.30.2130.30 8 262 3.0E-138 T 31-10-2018 Y89_0402 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 Pfam PF02597 ThiS family 3 66 3.9E-17 T 31-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Y89_0402 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 SUPERFAMILY SSF54285 2 65 5.5E-20 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y89_0402 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 Gene3D G3DSA:3.10.20.30 1 66 7.3E-25 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_0402 73dd1ba9fd57972ee7f3c15ccc9f8f79 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 2.2E-24 T 31-10-2018 IPR010035 ThiS, thiamine-biosynthesis Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 SUPERFAMILY SSF53720 8 420 1.83E-121 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 349 - T 31-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 410 1.6E-158 T 31-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 Pfam PF00171 Aldehyde dehydrogenase family 311 377 1.0E-5 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 Pfam PF00171 Aldehyde dehydrogenase family 14 282 1.0E-13 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 Gene3D G3DSA:3.40.605.10 16 417 1.9E-169 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 PIRSF PIRSF000151 1 421 5.5E-182 T 31-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 Gene3D G3DSA:3.40.309.10 229 378 1.9E-169 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_1017 6135711f9bf05504fcfd6f7d4a5f6073 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 420 42.734 T 31-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Y89_0232 116496cd760589f65591207f175615ba 179 SMART SM00530 4 59 2.2E-17 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0232 116496cd760589f65591207f175615ba 179 Pfam PF07883 Cupin domain 118 174 1.3E-13 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_0232 116496cd760589f65591207f175615ba 179 Gene3D G3DSA:2.60.120.10 68 175 1.0E-21 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0232 116496cd760589f65591207f175615ba 179 SUPERFAMILY SSF51182 67 175 5.63E-24 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0232 116496cd760589f65591207f175615ba 179 Pfam PF01381 Helix-turn-helix 5 59 1.5E-16 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0232 116496cd760589f65591207f175615ba 179 Gene3D G3DSA:1.10.260.40 1 67 8.5E-19 T 31-10-2018 Y89_0232 116496cd760589f65591207f175615ba 179 SUPERFAMILY SSF47413 3 66 2.95E-18 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_1280 3b2e3244b27a94faf6b6e3fd2f7d0ec5 266 Pfam PF01578 Cytochrome C assembly protein 38 263 2.6E-41 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Y89_2453 6fa0a7f1a5122be10c1e103912e5d8ac 672 Pfam PF05787 Bacterial protein of unknown function (DUF839) 85 636 8.7E-196 T 31-10-2018 IPR008557 Protein of unknown function DUF839 Y89_2453 6fa0a7f1a5122be10c1e103912e5d8ac 672 SUPERFAMILY SSF63829 345 636 3.17E-13 T 31-10-2018 Y89_3993 234d551252e8d7fa72a9f9b2182d41e6 368 Gene3D G3DSA:2.130.10.10 1 368 1.5E-103 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_3993 234d551252e8d7fa72a9f9b2182d41e6 368 SUPERFAMILY SSF110296 2 353 1.22E-58 T 31-10-2018 Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 Pfam PF00117 Glutamine amidotransferase class-I 31 215 6.6E-10 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 Pfam PF03992 Antibiotic biosynthesis monooxygenase 257 321 2.3E-7 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 SUPERFAMILY SSF54909 245 344 6.34E-30 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 Gene3D G3DSA:3.30.70.100 246 338 2.2E-36 T 31-10-2018 Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 SUPERFAMILY SSF52317 9 238 2.75E-43 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_2986 a02bd03a9bbfd525a804f66b97ac19c3 356 Gene3D G3DSA:3.40.50.880 7 235 5.8E-45 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 Pfam PF00664 ABC transporter transmembrane region 30 297 1.1E-50 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 9 583 3.5E-285 T 31-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 SMART SM00382 372 574 2.2E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 SUPERFAMILY SSF52540 338 583 7.17E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 Gene3D G3DSA:3.40.50.300 336 585 9.7E-89 T 31-10-2018 Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 Pfam PF00005 ABC transporter 364 512 1.7E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 SUPERFAMILY SSF90123 16 323 1.31E-72 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_4239 5647c46e7f65d0f22d9d0ef7a8638942 588 Gene3D G3DSA:1.20.1560.10 10 332 7.1E-80 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 Gene3D G3DSA:3.30.360.10 125 284 2.2E-88 T 31-10-2018 Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 Gene3D G3DSA:3.40.50.720 7 327 2.2E-88 T 31-10-2018 Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 TIGRFAM TIGR01761 thiaz-red: thiazolinyl imide reductase 2 332 7.0E-143 T 31-10-2018 IPR010091 Thiazolinyl imide reductase Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 119 5.0E-14 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 PIRSF PIRSF017494 1 349 5.9E-118 T 31-10-2018 IPR010091 Thiazolinyl imide reductase Y89_0798 39508bbd34948cd6707c6e567a5e9745 349 SUPERFAMILY SSF51735 13 139 1.73E-13 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0607 0b3dcff8f79e8ff9d00392733899e71c 60 SUPERFAMILY SSF54786 1 60 9.81E-19 T 31-10-2018 Y89_0607 0b3dcff8f79e8ff9d00392733899e71c 60 Gene3D G3DSA:3.30.920.30 1 59 1.1E-28 T 31-10-2018 IPR038570 HicA superfamily Y89_0607 0b3dcff8f79e8ff9d00392733899e71c 60 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 3 59 2.7E-22 T 31-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 SMART SM00316 146 208 0.87 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 SMART SM00316 71 133 6.9 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 PIRSF PIRSF012524 1 279 6.5E-104 T 31-10-2018 IPR014464 Conserved virulence factor B Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 Pfam PF13509 S1 domain 4 66 2.3E-22 T 31-10-2018 IPR039566 Conserved virulence factor B, S1 domain Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 Pfam PF13509 S1 domain 73 131 3.6E-9 T 31-10-2018 IPR039566 Conserved virulence factor B, S1 domain Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:1.10.10.10 217 277 5.0E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4236 e9e55b841622e6f87f6522b8b3ba58ed 279 Gene3D G3DSA:2.40.50.140 142 214 2.3E-5 T 31-10-2018 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 Pfam PF03466 LysR substrate binding domain 97 296 9.9E-29 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3159 4105a3c80910898ae278e50381f27ae2 301 Gene3D G3DSA:1.10.10.10 1 90 9.7E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3159 4105a3c80910898ae278e50381f27ae2 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 7.6E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 Gene3D G3DSA:3.40.190.10 172 270 2.6E-60 T 31-10-2018 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 SUPERFAMILY SSF46785 5 85 1.81E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3159 4105a3c80910898ae278e50381f27ae2 301 Gene3D G3DSA:3.40.190.10 96 294 2.6E-60 T 31-10-2018 Y89_3159 4105a3c80910898ae278e50381f27ae2 301 SUPERFAMILY SSF53850 96 297 1.45E-42 T 31-10-2018 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 Pfam PF12833 Helix-turn-helix domain 196 273 2.6E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 SUPERFAMILY SSF46689 226 274 3.58E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 SUPERFAMILY SSF46689 176 225 8.51E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 Gene3D G3DSA:1.10.10.60 226 277 9.6E-14 T 31-10-2018 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 Pfam PF02311 AraC-like ligand binding domain 19 147 2.1E-26 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 Gene3D G3DSA:1.10.10.60 172 225 1.9E-18 T 31-10-2018 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 SMART SM00342 190 272 5.5E-33 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1743 465acce8219b0997e7b9fbf04016999b 284 SUPERFAMILY SSF51215 31 158 1.44E-18 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_3708 25581296abccfe670802b8c13ca124d4 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 72 4.7E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3708 25581296abccfe670802b8c13ca124d4 215 Gene3D G3DSA:1.10.10.10 5 77 2.6E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3708 25581296abccfe670802b8c13ca124d4 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 3.6E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3708 25581296abccfe670802b8c13ca124d4 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 3.6E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3708 25581296abccfe670802b8c13ca124d4 215 SUPERFAMILY SSF46785 7 76 2.08E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3708 25581296abccfe670802b8c13ca124d4 215 SMART SM00895 92 215 1.2E-19 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3708 25581296abccfe670802b8c13ca124d4 215 SMART SM00345 13 72 7.8E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3708 25581296abccfe670802b8c13ca124d4 215 Gene3D G3DSA:1.20.120.530 93 215 3.9E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_3708 25581296abccfe670802b8c13ca124d4 215 Pfam PF07729 FCD domain 94 213 2.4E-28 T 31-10-2018 IPR011711 GntR, C-terminal Y89_3708 25581296abccfe670802b8c13ca124d4 215 SUPERFAMILY SSF48008 91 214 9.42E-29 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-24 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 SUPERFAMILY SSF51735 3 256 6.27E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0731 d75f0d17743355175e3bedfa3323b966 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 186 0.001 T 31-10-2018 Y89_0731 d75f0d17743355175e3bedfa3323b966 266 Pfam PF00106 short chain dehydrogenase 4 192 1.2E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PIRSF PIRSF000126 1 263 1.6E-69 T 31-10-2018 Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.3E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0731 d75f0d17743355175e3bedfa3323b966 266 Gene3D G3DSA:3.40.50.720 3 257 4.0E-62 T 31-10-2018 Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 SUPERFAMILY SSF53850 90 301 2.9E-47 T 31-10-2018 Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:3.40.190.10 93 293 2.6E-65 T 31-10-2018 Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:1.10.10.10 3 89 1.3E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 Gene3D G3DSA:3.40.190.10 164 267 2.6E-65 T 31-10-2018 Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 SUPERFAMILY SSF46785 2 112 9.41E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 Pfam PF03466 LysR substrate binding domain 91 296 4.0E-49 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4152 a86a44e66dd65ef524b13a551a6aff75 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.1E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1675 12c7720a30e28de54656955779d0fb81 79 Pfam PF00550 Phosphopantetheine attachment site 9 72 1.1E-7 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_1675 12c7720a30e28de54656955779d0fb81 79 Gene3D G3DSA:1.10.1200.10 1 79 1.4E-18 T 31-10-2018 IPR036736 ACP-like superfamily Y89_1675 12c7720a30e28de54656955779d0fb81 79 SUPERFAMILY SSF47336 3 77 3.01E-13 T 31-10-2018 IPR036736 ACP-like superfamily Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 395 463 2.0E-8 T 31-10-2018 IPR003399 Mce/MlaD Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 280 369 2.5E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 516 602 6.5E-10 T 31-10-2018 IPR003399 Mce/MlaD Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 156 216 4.7E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 41 131 1.8E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_5300 f147e9ccfd45cb5d25de0e30d64f5ac1 768 Pfam PF02470 MlaD protein 632 691 3.2E-7 T 31-10-2018 IPR003399 Mce/MlaD Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 SUPERFAMILY SSF50814 18 184 1.25E-45 T 31-10-2018 IPR012674 Calycin Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 Gene3D G3DSA:2.40.128.20 18 180 1.2E-46 T 31-10-2018 IPR012674 Calycin Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 Pfam PF08212 Lipocalin-like domain 34 179 9.0E-62 T 31-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 ProSitePatterns PS00213 Lipocalin signature. 35 46 - T 31-10-2018 IPR022272 Lipocalin family conserved site Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 PIRSF PIRSF036893 4 189 1.9E-55 T 31-10-2018 IPR022271 Lipocalin, ApoD type Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 PRINTS PR01171 Bacterial lipocalin signature 170 180 2.1E-10 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 PRINTS PR01171 Bacterial lipocalin signature 143 154 2.1E-10 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 PRINTS PR01171 Bacterial lipocalin signature 51 67 2.1E-10 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y89_5778 21179e8dc81ebdfebee40bbc61649ad1 189 PRINTS PR01171 Bacterial lipocalin signature 34 48 2.1E-10 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 Y89_3148 30372963d773cd211b4914a1d90646e1 215 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 145 206 4.6E-12 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_3148 30372963d773cd211b4914a1d90646e1 215 SUPERFAMILY SSF49354 2 123 3.4E-35 T 31-10-2018 IPR008962 PapD-like superfamily Y89_3148 30372963d773cd211b4914a1d90646e1 215 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 2 123 6.5E-37 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_3148 30372963d773cd211b4914a1d90646e1 215 SUPERFAMILY SSF49584 117 209 1.44E-14 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_3148 30372963d773cd211b4914a1d90646e1 215 Gene3D G3DSA:2.60.40.10 2 124 5.6E-36 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3148 30372963d773cd211b4914a1d90646e1 215 PRINTS PR00969 Pili chaperone signature 105 120 1.6E-28 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3148 30372963d773cd211b4914a1d90646e1 215 PRINTS PR00969 Pili chaperone signature 78 95 1.6E-28 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3148 30372963d773cd211b4914a1d90646e1 215 PRINTS PR00969 Pili chaperone signature 140 155 1.6E-28 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3148 30372963d773cd211b4914a1d90646e1 215 PRINTS PR00969 Pili chaperone signature 1 10 1.6E-28 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3148 30372963d773cd211b4914a1d90646e1 215 PRINTS PR00969 Pili chaperone signature 50 71 1.6E-28 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3148 30372963d773cd211b4914a1d90646e1 215 Gene3D G3DSA:2.60.40.10 126 215 3.1E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3725 98c8393825506dc495d9f23416708f3c 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 171 4.6E-98 T 31-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_3725 98c8393825506dc495d9f23416708f3c 171 Pfam PF07977 FabA-like domain 28 158 1.3E-52 T 31-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_3725 98c8393825506dc495d9f23416708f3c 171 Gene3D G3DSA:3.10.129.10 1 171 3.0E-74 T 31-10-2018 Y89_3725 98c8393825506dc495d9f23416708f3c 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 51.643 T 31-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_3725 98c8393825506dc495d9f23416708f3c 171 SUPERFAMILY SSF54637 2 168 4.97E-58 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 174 180 - T 31-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 140 153 1.7E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 164 192 1.7E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 216 233 1.7E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 234 250 1.7E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 325 351 1.7E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 187 485 1.5E-116 T 31-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 Gene3D G3DSA:3.30.360.10 174 473 5.1E-164 T 31-10-2018 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 Gene3D G3DSA:3.40.50.720 12 435 5.1E-164 T 31-10-2018 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 SUPERFAMILY SSF55347 179 486 5.23E-114 T 31-10-2018 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 8 485 7.5E-174 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 SUPERFAMILY SSF51735 7 187 2.9E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 184 2.7E-52 T 31-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 8 487 89.811 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_1833 5bad8f6ddc881daae76613313ab991a0 489 PIRSF PIRSF000110 2 488 3.9E-170 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 82 9.0E-18 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Pfam PF13410 Glutathione S-transferase, C-terminal domain 138 196 1.3E-6 T 31-10-2018 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Gene3D G3DSA:3.40.30.10 1 90 6.3E-28 T 31-10-2018 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 209 3.9E-89 T 31-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 Gene3D G3DSA:1.20.1050.10 91 212 2.5E-43 T 31-10-2018 Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 SUPERFAMILY SSF52833 1 92 6.87E-25 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3316 ee8a9fd1f7dace16e64eb2c31b9aed4a 212 SUPERFAMILY SSF47616 84 210 3.76E-29 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_1088 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 5 270 3.4E-67 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_1088 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 SUPERFAMILY SSF51197 3 277 1.33E-95 T 31-10-2018 Y89_1088 d3015c54ddfb0d0ed7e7c8bdd7f980b2 277 Gene3D G3DSA:3.60.130.10 1 277 6.5E-99 T 31-10-2018 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 SUPERFAMILY SSF53686 11 355 4.98E-109 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 SUPERFAMILY SSF55021 327 413 2.01E-28 T 31-10-2018 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Gene3D G3DSA:3.40.50.1100 50 146 3.6E-139 T 31-10-2018 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 SUPERFAMILY SSF55021 410 503 3.89E-26 T 31-10-2018 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 415 503 1.6E-21 T 31-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 409 2.4E-25 T 31-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 306 3.8E-85 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Gene3D G3DSA:3.40.1020.10 328 504 5.5E-73 T 31-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 4 503 7.7E-246 T 31-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Y89_0351 522aebce9fb53c0de3e05eb6a5042648 504 Gene3D G3DSA:3.40.50.1100 14 317 3.6E-139 T 31-10-2018 Y89_1674 54d229b0aa5f3f70095fcd82bdc200c4 270 Gene3D G3DSA:3.40.50.150 69 255 3.6E-11 T 31-10-2018 Y89_1674 54d229b0aa5f3f70095fcd82bdc200c4 270 SUPERFAMILY SSF53335 35 245 2.26E-13 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3731 31987ed9145ee2d124b352882a046ec2 301 SUPERFAMILY SSF53850 51 266 2.06E-19 T 31-10-2018 Y89_3731 31987ed9145ee2d124b352882a046ec2 301 Gene3D G3DSA:3.40.190.10 227 262 8.6E-8 T 31-10-2018 Y89_3731 31987ed9145ee2d124b352882a046ec2 301 Gene3D G3DSA:3.40.190.10 141 226 8.6E-8 T 31-10-2018 Y89_3731 31987ed9145ee2d124b352882a046ec2 301 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 137 265 1.3E-7 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 Gene3D G3DSA:1.10.10.10 1 83 2.5E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.1E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 SUPERFAMILY SSF53850 87 275 4.89E-24 T 31-10-2018 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 Gene3D G3DSA:3.40.190.10 85 174 2.4E-12 T 31-10-2018 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 SUPERFAMILY SSF46785 1 109 1.27E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3474 b21345d6bb9610ec1f6d13760f9325ae 287 Pfam PF03466 LysR substrate binding domain 87 273 1.4E-21 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5773 64a299447e73595a292d46676c4e5470 312 Pfam PF00487 Fatty acid desaturase 50 282 8.8E-33 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 SUPERFAMILY SSF52172 3 109 3.27E-28 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 Pfam PF00072 Response regulator receiver domain 5 109 6.7E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 Pfam PF01339 CheB methylesterase 187 363 2.8E-57 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 SUPERFAMILY SSF52738 182 367 3.79E-64 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 Gene3D G3DSA:3.40.50.2300 2 138 1.7E-31 T 31-10-2018 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 SMART SM00448 3 122 2.2E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 PIRSF PIRSF000876 1 368 1.4E-130 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 Gene3D G3DSA:3.40.50.180 179 366 3.9E-65 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_3880 a669f3eacd8fb10c02df40ac4fb15b2a 368 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 368 39.46 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 159 173 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 SMART SM00878 342 449 1.8E-56 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 SUPERFAMILY SSF52440 4 119 4.46E-46 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Gene3D G3DSA:3.40.50.20 1 135 8.5E-54 T 31-10-2018 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 122 328 1.8E-78 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 SUPERFAMILY SSF51230 573 650 5.89E-22 T 31-10-2018 IPR011053 Single hybrid motif Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 292 299 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Gene3D G3DSA:3.30.470.20 210 445 6.1E-112 T 31-10-2018 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 SUPERFAMILY SSF51246 337 454 4.55E-40 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Gene3D G3DSA:2.40.50.100 584 655 5.3E-27 T 31-10-2018 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Pfam PF00289 Biotin carboxylase, N-terminal domain 8 116 2.8E-41 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Pfam PF02785 Biotin carboxylase C-terminal domain 342 449 1.5E-37 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Gene3D G3DSA:3.30.1490.20 140 208 2.3E-28 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Pfam PF00364 Biotin-requiring enzyme 586 650 3.0E-18 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 Gene3D G3DSA:3.30.700.40 446 570 5.4E-63 T 31-10-2018 Y89_3311 4eb3a59cce97e14ef35c63c4adc629c7 655 SUPERFAMILY SSF56059 89 350 1.63E-68 T 31-10-2018 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 SUPERFAMILY SSF52518 7 182 2.45E-55 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Gene3D G3DSA:3.40.50.970 366 551 1.6E-56 T 31-10-2018 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 SUPERFAMILY SSF52467 160 356 8.88E-38 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 428 447 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 170 1.1E-54 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 332 1.9E-27 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Gene3D G3DSA:3.40.50.1220 190 359 8.6E-40 T 31-10-2018 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 SUPERFAMILY SSF52518 369 547 9.65E-57 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 537 5.0E-42 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_3287 b62c6111c675afbbdc3ad0d3153b5862 552 Gene3D G3DSA:3.40.50.970 2 182 1.4E-62 T 31-10-2018 Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 Pfam PF02595 Glycerate kinase family 3 372 6.0E-149 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 Gene3D G3DSA:3.90.1510.10 42 275 9.1E-142 T 31-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 PIRSF PIRSF006078 1 377 2.8E-134 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 2.3E-162 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 Gene3D G3DSA:3.40.50.10350 1 361 9.1E-142 T 31-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold Y89_4303 eaa75433cc5e5f5adb32fedd4842866c 381 SUPERFAMILY SSF110738 1 374 1.44E-135 T 31-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 Y89_0983 2bef22252b2725dbafec5c59b797d718 389 Gene3D G3DSA:3.20.20.120 127 381 1.6E-51 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_0983 2bef22252b2725dbafec5c59b797d718 389 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 44 133 3.2E-5 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y89_0983 2bef22252b2725dbafec5c59b797d718 389 Gene3D G3DSA:3.30.390.10 1 126 4.4E-50 T 31-10-2018 IPR029017 Enolase-like, N-terminal Y89_0983 2bef22252b2725dbafec5c59b797d718 389 SMART SM00922 162 259 6.2E-13 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y89_0983 2bef22252b2725dbafec5c59b797d718 389 SUPERFAMILY SSF54826 1 136 2.92E-26 T 31-10-2018 Y89_0983 2bef22252b2725dbafec5c59b797d718 389 SUPERFAMILY SSF51604 122 376 7.53E-44 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_0983 2bef22252b2725dbafec5c59b797d718 389 Pfam PF13378 Enolase C-terminal domain-like 166 374 9.1E-32 T 31-10-2018 IPR029065 Enolase C-terminal domain-like Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 Pfam PF17287 POTRA domain 161 203 4.2E-15 T 31-10-2018 IPR035251 ShlB, POTRA domain Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 Gene3D G3DSA:3.10.20.310 61 149 7.3E-18 T 31-10-2018 Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 208 528 6.5E-98 T 31-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 PIRSF PIRSF029745 1 565 5.5E-152 T 31-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 Gene3D G3DSA:2.40.160.50 181 565 1.4E-86 T 31-10-2018 Y89_2738 1a360f4e89abfa63c7d9864668a7aeac 565 Pfam PF08479 POTRA domain, ShlB-type 74 149 5.1E-27 T 31-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type Y89_6152 ec3d34b04bad802d78b32af7efbcf8c1 346 Gene3D G3DSA:3.40.640.10 17 255 4.4E-126 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_6152 ec3d34b04bad802d78b32af7efbcf8c1 346 Pfam PF01212 Beta-eliminating lyase 7 297 1.2E-79 T 31-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Y89_6152 ec3d34b04bad802d78b32af7efbcf8c1 346 SUPERFAMILY SSF53383 7 341 1.9E-102 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_6152 ec3d34b04bad802d78b32af7efbcf8c1 346 PIRSF PIRSF038940 5 346 6.0E-138 T 31-10-2018 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 Y89_6152 ec3d34b04bad802d78b32af7efbcf8c1 346 Gene3D G3DSA:3.90.1150.10 10 335 4.4E-126 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_6268 2bfbb81552d9b39d4380dda3294a4d9f 284 SMART SM00978 152 283 2.8E-20 T 31-10-2018 IPR007379 Tim44-like domain Y89_6268 2bfbb81552d9b39d4380dda3294a4d9f 284 SUPERFAMILY SSF54427 154 282 1.31E-5 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_6268 2bfbb81552d9b39d4380dda3294a4d9f 284 Pfam PF04280 Tim44-like domain 161 282 4.1E-8 T 31-10-2018 IPR007379 Tim44-like domain Y89_6095 6667790fc8bdacc703847d535aaa9b6e 178 SUPERFAMILY SSF64288 8 170 3.14E-48 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_6095 6667790fc8bdacc703847d535aaa9b6e 178 Gene3D G3DSA:3.40.1410.10 2 170 5.5E-47 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_6095 6667790fc8bdacc703847d535aaa9b6e 178 Pfam PF04345 Chorismate lyase 1 175 1.2E-78 T 31-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 Y89_6095 6667790fc8bdacc703847d535aaa9b6e 178 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 5 172 26.822 T 31-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 Pfam PF03772 Competence protein 201 463 1.2E-53 T 31-10-2018 IPR004477 ComEC/Rec2-related protein Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 SMART SM00849 504 687 9.3E-10 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 SUPERFAMILY SSF56281 496 721 4.19E-41 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 Gene3D G3DSA:3.60.15.10 493 726 1.7E-44 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 122 716 3.5E-87 T 31-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 Pfam PF13567 Domain of unknown function (DUF4131) 21 168 3.5E-22 T 31-10-2018 IPR025405 Domain of unknown function DUF4131 Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 222 400 3.4E-21 T 31-10-2018 IPR004477 ComEC/Rec2-related protein Y89_2036 ebe17ef42a2a146c67cfdd0241f67757 741 Pfam PF00753 Metallo-beta-lactamase superfamily 501 668 3.5E-18 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_2948 ea1401ee6552d48b895a29f1af95459b 205 Pfam PF01810 LysE type translocator 17 192 2.0E-17 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_1924 c304307a554f0b55ef0e2b8f606ae9d5 174 Pfam PF04612 Type II secretion system (T2SS), protein M 18 171 8.8E-45 T 31-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 Y89_1924 c304307a554f0b55ef0e2b8f606ae9d5 174 SUPERFAMILY SSF103054 99 171 5.1E-15 T 31-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily Y89_1924 c304307a554f0b55ef0e2b8f606ae9d5 174 Gene3D G3DSA:3.30.1360.100 98 174 5.0E-14 T 31-10-2018 Y89_1924 c304307a554f0b55ef0e2b8f606ae9d5 174 PIRSF PIRSF006291 15 174 1.3E-26 T 31-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 5.1E-10 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 Gene3D G3DSA:3.30.230.70 11 239 1.1E-65 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 237 6.3E-115 T 31-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 SUPERFAMILY SSF54211 3 182 6.07E-47 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 Hamap MF_00564 Ribonuclease PH [rph]. 12 238 45.21 T 31-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 3.6E-27 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 SUPERFAMILY SSF55666 153 238 7.98E-27 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Y89_6072 27586bd646c37c7307d4786e0b8af06e 239 ProSitePatterns PS01277 Ribonuclease PH signature. 117 129 - T 31-10-2018 IPR018336 Ribonuclease PH, conserved site Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Gene3D G3DSA:2.40.50.100 3 86 4.2E-22 T 31-10-2018 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 SUPERFAMILY SSF51230 3 96 8.38E-26 T 31-10-2018 IPR011053 Single hybrid motif Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Gene3D G3DSA:3.30.559.10 188 425 2.0E-81 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Pfam PF00364 Biotin-requiring enzyme 5 76 6.6E-19 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Pfam PF02817 e3 binding domain 139 173 2.1E-11 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Gene3D G3DSA:4.10.320.10 128 180 1.1E-15 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 198 426 1.2E-78 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 SUPERFAMILY SSF52777 192 427 1.96E-78 T 31-10-2018 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Y89_3005 63eaa99098b92a054ab01a581977b8ce 428 SUPERFAMILY SSF47005 133 178 3.92E-11 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_2232 bb5f2d0bb445c4b850b470ede09b6401 160 Pfam PF01740 STAS domain 7 103 4.2E-6 T 31-10-2018 IPR002645 STAS domain Y89_2232 bb5f2d0bb445c4b850b470ede09b6401 160 SUPERFAMILY SSF52091 6 106 2.75E-14 T 31-10-2018 IPR036513 STAS domain superfamily Y89_2232 bb5f2d0bb445c4b850b470ede09b6401 160 Gene3D G3DSA:3.30.750.24 3 107 1.0E-14 T 31-10-2018 IPR036513 STAS domain superfamily Y89_2232 bb5f2d0bb445c4b850b470ede09b6401 160 PIRSF PIRSF029548 1 160 2.0E-106 T 31-10-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type Y89_3465 0c5e47147951be04ab275136d88754cf 361 Gene3D G3DSA:3.40.50.300 9 230 1.2E-61 T 31-10-2018 Y89_3465 0c5e47147951be04ab275136d88754cf 361 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 4 359 6.2E-142 T 31-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 Y89_3465 0c5e47147951be04ab275136d88754cf 361 Pfam PF03459 TOBE domain 297 359 7.8E-18 T 31-10-2018 IPR005116 Transport-associated OB, type 1 Y89_3465 0c5e47147951be04ab275136d88754cf 361 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3465 0c5e47147951be04ab275136d88754cf 361 SUPERFAMILY SSF50331 239 360 4.54E-21 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_3465 0c5e47147951be04ab275136d88754cf 361 SUPERFAMILY SSF52540 10 225 2.54E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3465 0c5e47147951be04ab275136d88754cf 361 Pfam PF00005 ABC transporter 19 162 7.8E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3465 0c5e47147951be04ab275136d88754cf 361 Gene3D G3DSA:2.40.50.100 296 360 8.5E-15 T 31-10-2018 Y89_3465 0c5e47147951be04ab275136d88754cf 361 SMART SM00382 25 212 2.1E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3250 2fcfb9de76ca409db1c36868a6a25cde 557 Gene3D G3DSA:3.40.50.300 42 234 1.7E-31 T 31-10-2018 Y89_3250 2fcfb9de76ca409db1c36868a6a25cde 557 PIRSF PIRSF007056 20 553 5.2E-227 T 31-10-2018 IPR012036 Bacteriophage Mu, Gp28 Y89_3250 2fcfb9de76ca409db1c36868a6a25cde 557 Gene3D G3DSA:3.30.420.240 339 520 6.1E-7 T 31-10-2018 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 SUPERFAMILY SSF53187 6 329 1.69E-76 T 31-10-2018 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 6 328 1.4E-115 T 31-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 Gene3D G3DSA:3.40.630.10 4 332 2.1E-107 T 31-10-2018 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 332 153.935 T 31-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 PIRSF PIRSF017020 1 332 3.5E-117 T 31-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 Y89_4458 181cc66524596ffdeb0d291ee6caf93a 332 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 49 330 1.2E-76 T 31-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 Gene3D G3DSA:3.40.718.10 1 357 9.1E-152 T 31-10-2018 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 353 9.8E-140 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 31-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 53.49 T 31-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 1.3E-163 T 31-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 SMART SM01329 4 353 1.8E-212 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y89_1901 d405ba3087c78f64e14ea213f120c3da 360 SUPERFAMILY SSF53659 2 359 2.88E-126 T 31-10-2018 Y89_3777 ca75bfba21ba7e822858af72eb602804 385 Pfam PF07993 Male sterility protein 21 253 4.3E-30 T 31-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 Y89_3777 ca75bfba21ba7e822858af72eb602804 385 Gene3D G3DSA:3.40.50.720 3 352 8.3E-49 T 31-10-2018 Y89_3777 ca75bfba21ba7e822858af72eb602804 385 SUPERFAMILY SSF51735 17 364 5.23E-36 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0465 247239d471cfc1fd34a6ef8d48537d51 496 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 38 455 7.2E-92 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_0465 247239d471cfc1fd34a6ef8d48537d51 496 Gene3D G3DSA:1.10.4160.10 23 478 3.7E-115 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 SUPERFAMILY SSF47203 228 379 1.01E-18 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 SUPERFAMILY SSF56645 9 239 4.71E-68 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:2.40.110.10 122 232 3.7E-35 T 31-10-2018 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 216 1.6E-22 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 377 1.8E-16 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:1.20.140.10 233 381 6.0E-32 T 31-10-2018 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 118 1.4E-19 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4333 621ee84e38d395472ada55173a3fcf5e 381 Gene3D G3DSA:1.10.540.10 6 117 7.8E-27 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2572 154957f1836800422ba03118afc10dd7 253 Gene3D G3DSA:3.40.50.720 1 251 1.4E-68 T 31-10-2018 Y89_2572 154957f1836800422ba03118afc10dd7 253 SUPERFAMILY SSF51735 1 252 9.34E-70 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2572 154957f1836800422ba03118afc10dd7 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 250 9.1E-52 T 31-10-2018 Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2572 154957f1836800422ba03118afc10dd7 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 Hamap MF_01987 Ribokinase [rbsK]. 3 303 27.896 T 31-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 SUPERFAMILY SSF53613 3 303 9.51E-89 T 31-10-2018 IPR029056 Ribokinase-like Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 Gene3D G3DSA:3.40.1190.20 1 307 1.5E-108 T 31-10-2018 IPR029056 Ribokinase-like Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 PRINTS PR00990 Ribokinase signature 34 53 5.1E-36 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 PRINTS PR00990 Ribokinase signature 219 230 5.1E-36 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 PRINTS PR00990 Ribokinase signature 175 190 5.1E-36 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 PRINTS PR00990 Ribokinase signature 106 119 5.1E-36 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 PRINTS PR00990 Ribokinase signature 7 28 5.1E-36 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 Pfam PF00294 pfkB family carbohydrate kinase 3 296 1.1E-73 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB Y89_3374 25ff4206591b9e8ff1ab640f81d9e85c 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 301 3.7E-119 T 31-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 Y89_3464 50d335218ddc9d8958c2a6898ed5c2ec 228 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 219 1.7E-71 T 31-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Y89_3464 50d335218ddc9d8958c2a6898ed5c2ec 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 217 3.9E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3464 50d335218ddc9d8958c2a6898ed5c2ec 228 SUPERFAMILY SSF161098 6 218 1.31E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3464 50d335218ddc9d8958c2a6898ed5c2ec 228 Gene3D G3DSA:1.10.3720.10 2 223 1.6E-54 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 Gene3D G3DSA:3.40.190.10 97 264 2.4E-40 T 31-10-2018 Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 Gene3D G3DSA:3.40.190.10 167 260 2.4E-40 T 31-10-2018 Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 SUPERFAMILY SSF53850 94 287 1.55E-21 T 31-10-2018 Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 SUPERFAMILY SSF46785 3 84 2.43E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 Gene3D G3DSA:1.10.10.10 1 86 4.4E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.0E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4087 c0b286ee7b77a85aaf5e2746dde088c5 288 Pfam PF03466 LysR substrate binding domain 94 286 7.3E-22 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0167 fcb78c0557e0b1c209e3ca3acad16299 201 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 52 80 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_0167 fcb78c0557e0b1c209e3ca3acad16299 201 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 9 201 1.5E-75 T 31-10-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 Y89_0167 fcb78c0557e0b1c209e3ca3acad16299 201 Gene3D G3DSA:2.60.130.10 2 201 1.6E-77 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_0167 fcb78c0557e0b1c209e3ca3acad16299 201 SUPERFAMILY SSF49482 5 201 8.63E-58 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_0167 fcb78c0557e0b1c209e3ca3acad16299 201 Pfam PF00775 Dioxygenase 39 191 5.6E-13 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 SMART SM01236 187 289 2.7E-20 T 31-10-2018 Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 Gene3D G3DSA:1.10.1240.20 22 106 1.4E-31 T 31-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 SUPERFAMILY SSF48613 120 334 7.79E-31 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 Pfam PF14518 Iron-containing redox enzyme 154 321 4.8E-14 T 31-10-2018 Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 Pfam PF14515 Haem-oxygenase-associated N-terminal helices 19 106 1.3E-44 T 31-10-2018 IPR029474 Haem-oxygenase-associated, N-terminal helices Y89_1508 9ff84ec3ad2c8927f560c0fc9ad10e43 345 Gene3D G3DSA:1.20.910.10 117 342 6.4E-47 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_5351 81075996d791d34250ee46b1137f5ce9 65 PIRSF PIRSF039008 1 65 4.2E-32 T 31-10-2018 IPR026042 Stress response protein YjbJ Y89_5351 81075996d791d34250ee46b1137f5ce9 65 Gene3D G3DSA:1.10.1470.10 1 65 1.9E-32 T 31-10-2018 IPR036629 YjbJ superfamily Y89_5351 81075996d791d34250ee46b1137f5ce9 65 Pfam PF05532 CsbD-like 4 55 4.1E-20 T 31-10-2018 IPR008462 CsbD-like domain Y89_5351 81075996d791d34250ee46b1137f5ce9 65 SUPERFAMILY SSF69047 1 64 3.79E-25 T 31-10-2018 IPR036629 YjbJ superfamily Y89_3843 573289e873c0e40ebe88818f0a197911 208 SUPERFAMILY SSF109604 23 194 3.98E-19 T 31-10-2018 Y89_3843 573289e873c0e40ebe88818f0a197911 208 PIRSF PIRSF035170 1 207 1.7E-82 T 31-10-2018 IPR009218 Predicted HD phosphohydrolase Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 Pfam PF03466 LysR substrate binding domain 92 298 4.7E-41 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 SUPERFAMILY SSF46785 10 116 2.93E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 Gene3D G3DSA:3.40.190.10 167 268 6.4E-66 T 31-10-2018 Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 Gene3D G3DSA:3.40.190.10 95 296 6.4E-66 T 31-10-2018 Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 Gene3D G3DSA:1.10.10.10 8 94 2.4E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 1.2E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1895 cfcf44a448d1068c04f43e454068ed41 308 SUPERFAMILY SSF53850 94 299 1.25E-42 T 31-10-2018 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Gene3D G3DSA:3.40.50.2300 1 126 6.8E-34 T 31-10-2018 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SUPERFAMILY SSF46894 133 233 1.16E-28 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SMART SM00448 6 116 4.6E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 1.6E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SUPERFAMILY SSF52172 5 125 6.4E-38 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 SMART SM00862 156 232 3.4E-26 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Pfam PF00072 Response regulator receiver domain 8 117 4.1E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4196 9ffdbfe23d9f74aefa548ed0bceebd7f 236 Gene3D G3DSA:1.10.10.10 132 236 4.6E-38 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 SMART SM00345 17 76 2.8E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 SUPERFAMILY SSF46785 10 80 8.52E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 Gene3D G3DSA:3.40.640.10 110 465 3.4E-112 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 Pfam PF00155 Aminotransferase class I and II 140 392 3.7E-18 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 SUPERFAMILY SSF53383 117 472 6.48E-84 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.8E-18 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.1E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.1E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0286 41da6c310a0d07e5732acabeb0c0d3dd 473 Gene3D G3DSA:1.10.10.10 12 109 1.8E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5173 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.0E-33 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.0E-33 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.0E-33 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.0E-33 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 Pfam PF01018 GTP1/OBG 4 158 2.8E-60 T 31-10-2018 IPR006169 GTP1/OBG domain Y89_5173 3250e70161daaf149ca278e456bf69e0 406 SUPERFAMILY SSF82051 2 158 2.62E-57 T 31-10-2018 IPR036726 GTP1/OBG domain superfamily Y89_5173 3250e70161daaf149ca278e456bf69e0 406 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 31-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 Hamap MF_01454 GTPase Obg [obg]. 2 334 47.483 T 31-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 333 4.8E-145 T 31-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.5E-21 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 Gene3D G3DSA:3.40.50.300 159 339 2.4E-48 T 31-10-2018 Y89_5173 3250e70161daaf149ca278e456bf69e0 406 SUPERFAMILY SSF52540 151 339 7.25E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5173 3250e70161daaf149ca278e456bf69e0 406 Gene3D G3DSA:2.70.210.12 1 158 8.4E-63 T 31-10-2018 IPR036726 GTP1/OBG domain superfamily Y89_5173 3250e70161daaf149ca278e456bf69e0 406 PIRSF PIRSF002401 1 378 1.6E-136 T 31-10-2018 IPR035101 GTP-binding protein, Obg-type Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 1.3E-154 T 31-10-2018 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 Gene3D G3DSA:1.20.1250.20 240 442 8.7E-60 T 31-10-2018 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 31-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 SUPERFAMILY SSF103473 10 438 5.75E-87 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 Gene3D G3DSA:1.20.1250.20 18 226 3.0E-60 T 31-10-2018 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 PIRSF PIRSF002808 5 447 1.2E-174 T 31-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 Pfam PF07690 Major Facilitator Superfamily 34 400 3.4E-53 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5923 97e6f9b1264414b90d1d481ad25cc947 448 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 435 2.0E-240 T 31-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 Y89_4326 a8f1ddf5bd7532ad59a4022dac55ca30 122 SUPERFAMILY SSF47413 15 56 5.9E-8 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_4326 a8f1ddf5bd7532ad59a4022dac55ca30 122 Gene3D G3DSA:1.10.260.40 6 73 9.6E-9 T 31-10-2018 Y89_4326 a8f1ddf5bd7532ad59a4022dac55ca30 122 Pfam PF09722 Protein of unknown function (DUF2384) 71 120 4.5E-14 T 31-10-2018 IPR024467 Domain of unknown function DUF2384 Y89_4326 a8f1ddf5bd7532ad59a4022dac55ca30 122 Pfam PF01381 Helix-turn-helix 21 48 1.1E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 SMART SM00382 208 379 4.4E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 Gene3D G3DSA:3.40.50.300 204 389 5.1E-47 T 31-10-2018 Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 Pfam PF00448 SRP54-type protein, GTPase domain 211 399 4.8E-40 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 Gene3D G3DSA:1.20.120.1380 185 391 5.1E-47 T 31-10-2018 Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 SUPERFAMILY SSF52540 207 398 2.64E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 297 5.1E-77 T 31-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Y89_3886 9f69a74f8b87ac186ef02dd412b49134 429 SMART SM00962 209 401 2.9E-46 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 2.3E-28 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_1746 d401db42343047fc26861ae9ec183bf4 69 Gene3D G3DSA:2.40.50.140 4 68 2.7E-27 T 31-10-2018 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 SUPERFAMILY SSF50249 3 68 1.09E-23 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1746 d401db42343047fc26861ae9ec183bf4 69 PIRSF PIRSF002599 1 69 2.0E-22 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 7 22 6.6E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 42 60 6.6E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 PRINTS PR00050 Cold shock protein signature 27 36 6.6E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_1746 d401db42343047fc26861ae9ec183bf4 69 SMART SM00357 6 69 4.0E-29 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 SUPERFAMILY SSF103088 328 443 7.98E-29 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 Gene3D G3DSA:1.25.40.590 63 221 2.9E-54 T 31-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 66 275 1.2E-72 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 Pfam PF00691 OmpA family 339 437 2.0E-15 T 31-10-2018 IPR006665 OmpA-like domain Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 Gene3D G3DSA:3.30.1330.60 295 449 1.2E-55 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 307 443 3.2E-53 T 31-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain Y89_0088 3a3b779c6bd1f19721562598e2240fcb 449 Pfam PF09850 Type VI secretion system protein DotU 67 269 7.8E-69 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Gene3D G3DSA:1.20.1250.20 415 539 1.7E-7 T 31-10-2018 Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Gene3D G3DSA:1.20.1250.20 20 360 1.1E-58 T 31-10-2018 Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 Pfam PF00083 Sugar (and other) transporter 25 333 7.6E-31 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 SUPERFAMILY SSF103473 19 535 1.92E-61 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1317 7cdbd1444fd68b26a7ef9a663d43d6a0 539 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 321 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5584 4d9d8fec38259cab6d25001179998632 312 SUPERFAMILY SSF53850 94 299 3.08E-41 T 31-10-2018 Y89_5584 4d9d8fec38259cab6d25001179998632 312 Pfam PF03466 LysR substrate binding domain 94 295 2.9E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5584 4d9d8fec38259cab6d25001179998632 312 SUPERFAMILY SSF46785 4 117 5.75E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5584 4d9d8fec38259cab6d25001179998632 312 Gene3D G3DSA:1.10.10.10 8 89 3.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5584 4d9d8fec38259cab6d25001179998632 312 Gene3D G3DSA:3.40.190.10 106 291 9.3E-52 T 31-10-2018 Y89_5584 4d9d8fec38259cab6d25001179998632 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.8E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5584 4d9d8fec38259cab6d25001179998632 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5584 4d9d8fec38259cab6d25001179998632 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5584 4d9d8fec38259cab6d25001179998632 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5584 4d9d8fec38259cab6d25001179998632 312 Gene3D G3DSA:3.40.190.10 166 264 9.3E-52 T 31-10-2018 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 Gene3D G3DSA:3.40.50.10490 3 196 5.1E-64 T 31-10-2018 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 1.0E-113 T 31-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 SMART SM00116 275 323 0.02 T 31-10-2018 IPR000644 CBS domain Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 SMART SM00116 210 258 3.0 T 31-10-2018 IPR000644 CBS domain Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 SUPERFAMILY SSF53697 9 322 1.62E-69 T 31-10-2018 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 Gene3D G3DSA:3.10.580.10 197 321 5.0E-44 T 31-10-2018 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 Pfam PF01380 SIS domain 41 172 2.7E-32 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 PIRSF PIRSF004692 1 324 4.9E-133 T 31-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 Pfam PF00571 CBS domain 217 258 1.0E-4 T 31-10-2018 IPR000644 CBS domain Y89_4947 1578cbc78fab64bb33b3768c633ee017 324 Pfam PF00571 CBS domain 277 321 6.0E-7 T 31-10-2018 IPR000644 CBS domain Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Gene3D G3DSA:3.40.50.12740 668 791 6.9E-47 T 31-10-2018 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Pfam PF07695 7TM diverse intracellular signalling 184 386 5.1E-56 T 31-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SMART SM00387 530 645 1.2E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SUPERFAMILY SSF55874 472 642 2.62E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SUPERFAMILY SSF47384 404 484 1.12E-16 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 584 1.0E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 605 623 1.0E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 598 1.0E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 642 1.0E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Pfam PF07696 7TMR-DISM extracellular 2 32 171 3.4E-36 T 31-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Gene3D G3DSA:1.10.287.130 383 481 2.1E-18 T 31-10-2018 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SMART SM00388 418 483 5.3E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Gene3D G3DSA:3.30.565.10 482 648 3.0E-42 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Pfam PF00072 Response regulator receiver domain 670 780 4.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Pfam PF00512 His Kinase A (phospho-acceptor) domain 419 482 1.7E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SMART SM00448 668 781 5.5E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 SUPERFAMILY SSF52172 667 785 1.05E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 644 3.7E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1048 9a02400e75d9b10c746123cbeb34b4d0 795 Gene3D G3DSA:2.60.40.2380 29 173 1.1E-29 T 31-10-2018 Y89_2575 db4a1adbe900fbbf553a6df6ff4bf7df 540 Gene3D G3DSA:1.20.1250.20 19 407 9.9E-40 T 31-10-2018 Y89_2575 db4a1adbe900fbbf553a6df6ff4bf7df 540 Pfam PF05977 Transmembrane secretion effector 17 521 1.7E-139 T 31-10-2018 IPR010290 Transmembrane secretion effector Y89_2575 db4a1adbe900fbbf553a6df6ff4bf7df 540 SUPERFAMILY SSF103473 23 406 2.22E-46 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4850 23caaa2026ac5963d774279b416bcc69 133 Pfam PF10000 ACT domain 2 69 1.0E-27 T 31-10-2018 IPR018717 Domain of unknown function DUF2241 Y89_4850 23caaa2026ac5963d774279b416bcc69 133 SUPERFAMILY SSF55021 70 128 2.44E-17 T 31-10-2018 Y89_4850 23caaa2026ac5963d774279b416bcc69 133 Gene3D G3DSA:3.30.2130.10 1 130 1.3E-46 T 31-10-2018 Y89_4850 23caaa2026ac5963d774279b416bcc69 133 SUPERFAMILY SSF55021 3 66 2.2E-17 T 31-10-2018 Y89_4850 23caaa2026ac5963d774279b416bcc69 133 Pfam PF13840 ACT domain 70 126 4.4E-11 T 31-10-2018 IPR027795 CASTOR, ACT domain Y89_4891 91c3d696ce60b22514e037637a28d513 405 SUPERFAMILY SSF56266 14 402 2.49E-131 T 31-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_4891 91c3d696ce60b22514e037637a28d513 405 Gene3D G3DSA:3.10.20.340 276 405 1.7E-40 T 31-10-2018 Y89_4891 91c3d696ce60b22514e037637a28d513 405 Gene3D G3DSA:3.60.70.12 9 275 2.3E-86 T 31-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_4891 91c3d696ce60b22514e037637a28d513 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 22 405 0.0 T 31-10-2018 Y89_4891 91c3d696ce60b22514e037637a28d513 405 Pfam PF01960 ArgJ family 21 405 2.1E-136 T 31-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_4891 91c3d696ce60b22514e037637a28d513 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 14 405 8.9E-114 T 31-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_4891 91c3d696ce60b22514e037637a28d513 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 153.049 T 31-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 SMART SM00346 2 93 1.2E-19 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 Pfam PF09339 IclR helix-turn-helix domain 6 56 2.5E-17 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 SUPERFAMILY SSF55781 70 251 1.63E-38 T 31-10-2018 Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 Pfam PF01614 Bacterial transcriptional regulator 124 250 9.7E-19 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 SUPERFAMILY SSF46785 6 76 1.07E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 Gene3D G3DSA:3.30.450.40 77 256 9.1E-43 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0243 36e8636f59aef0dfbacf8f8e53d6fa3a 259 Gene3D G3DSA:1.10.10.10 4 76 2.3E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2175 0ca92ff476d439de2557d13290146450 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.0E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2175 0ca92ff476d439de2557d13290146450 284 Gene3D G3DSA:1.10.10.10 7 96 2.7E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2175 0ca92ff476d439de2557d13290146450 284 Gene3D G3DSA:3.40.190.10 163 256 3.1E-55 T 31-10-2018 Y89_2175 0ca92ff476d439de2557d13290146450 284 SUPERFAMILY SSF53850 95 282 3.26E-26 T 31-10-2018 Y89_2175 0ca92ff476d439de2557d13290146450 284 Pfam PF03466 LysR substrate binding domain 96 282 1.7E-25 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2175 0ca92ff476d439de2557d13290146450 284 SUPERFAMILY SSF46785 7 116 1.68E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2175 0ca92ff476d439de2557d13290146450 284 Gene3D G3DSA:3.40.190.10 100 263 3.1E-55 T 31-10-2018 Y89_1963 1f2549aabae0ba2729555dede68e015d 158 Gene3D G3DSA:1.10.260.40 8 87 7.9E-9 T 31-10-2018 Y89_1963 1f2549aabae0ba2729555dede68e015d 158 SUPERFAMILY SSF47413 9 61 4.02E-8 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_1963 1f2549aabae0ba2729555dede68e015d 158 SMART SM00530 13 68 0.0036 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_1963 1f2549aabae0ba2729555dede68e015d 158 Pfam PF13560 Helix-turn-helix domain 11 58 9.4E-8 T 31-10-2018 Y89_2254 3fc4eff73b200050898fc54d6ee912b6 427 SUPERFAMILY SSF51905 30 413 1.6E-45 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2254 3fc4eff73b200050898fc54d6ee912b6 427 Gene3D G3DSA:3.30.9.10 123 344 6.9E-73 T 31-10-2018 Y89_2254 3fc4eff73b200050898fc54d6ee912b6 427 Pfam PF01266 FAD dependent oxidoreductase 31 381 6.1E-55 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_2254 3fc4eff73b200050898fc54d6ee912b6 427 Gene3D G3DSA:3.50.50.60 31 382 6.9E-73 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6010 a331bea73d65982a9d555e04f40bc148 363 Gene3D G3DSA:3.20.20.70 1 363 3.3E-123 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_6010 a331bea73d65982a9d555e04f40bc148 363 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 339 2.2E-64 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_6010 a331bea73d65982a9d555e04f40bc148 363 SUPERFAMILY SSF51395 1 352 3.1E-108 T 31-10-2018 Y89_4683 4ceca3f1c560218d906762a19258c458 105 SMART SM00966 8 53 3.8E-9 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Y89_4683 4ceca3f1c560218d906762a19258c458 105 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 9 48 5.4E-9 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Y89_4683 4ceca3f1c560218d906762a19258c458 105 ProDom PD030562 SUPPRESSOR HTRA PROTEASE TRANSCRIPTIONAL REGULATOR HTAR SOHA ABRB YDCA BLL1688 8 68 3.0E-7 T 31-10-2018 Y89_4683 4ceca3f1c560218d906762a19258c458 105 Pfam PF15937 prlF antitoxin for toxin YhaV_toxin 8 101 3.9E-15 T 31-10-2018 IPR031848 PrlF antitoxin GO:0001558|GO:0003700|GO:0097351 Y89_4683 4ceca3f1c560218d906762a19258c458 105 SUPERFAMILY SSF89447 3 49 1.55E-10 T 31-10-2018 IPR037914 SpoVT-AbrB domain superfamily Y89_4683 4ceca3f1c560218d906762a19258c458 105 Gene3D G3DSA:2.10.260.10 2 46 5.9E-12 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 SUPERFAMILY SSF69279 10 184 4.82E-57 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 SUPERFAMILY SSF69279 184 366 3.91E-45 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 SUPERFAMILY SSF69349 444 626 1.49E-37 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 Pfam PF05954 Phage late control gene D protein (GPD) 29 322 2.2E-79 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 SUPERFAMILY SSF69255 366 454 2.46E-34 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 Gene3D G3DSA:2.40.50.230 357 458 5.4E-44 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_5955 14e00a09d48b0d7850229eef5435798e 691 Gene3D G3DSA:2.30.110.50 20 323 1.1E-88 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 524 1.0E-204 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_5955 14e00a09d48b0d7850229eef5435798e 691 Gene3D G3DSA:3.55.50.10 95 188 1.1E-88 T 31-10-2018 Y89_5955 14e00a09d48b0d7850229eef5435798e 691 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 506 1.1E-125 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_5955 14e00a09d48b0d7850229eef5435798e 691 Gene3D G3DSA:3.30.1920.30 220 279 1.1E-88 T 31-10-2018 Y89_4285 1905f6982d85448d778738b33a25b31a 764 SUPERFAMILY SSF48452 195 529 9.7E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4285 1905f6982d85448d778738b33a25b31a 764 SUPERFAMILY SSF48452 469 536 3.51E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4285 1905f6982d85448d778738b33a25b31a 764 Gene3D G3DSA:1.25.40.10 37 534 4.1E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1810 893827f6c2c84d45d6e265cac57d306b 146 Gene3D G3DSA:1.20.120.1490 76 138 2.4E-7 T 31-10-2018 Y89_1810 893827f6c2c84d45d6e265cac57d306b 146 Pfam PF07813 LTXXQ motif family protein 43 123 1.0E-6 T 31-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y89_1810 893827f6c2c84d45d6e265cac57d306b 146 PIRSF PIRSF034445 1 94 2.4E-5 T 31-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y89_1810 893827f6c2c84d45d6e265cac57d306b 146 PIRSF PIRSF034445 80 133 9.2E-8 T 31-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 100 1.5E-6 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 Gene3D G3DSA:1.10.760.10 23 104 4.7E-35 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 28 41 4.9E-29 T 31-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 92 102 4.9E-29 T 31-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 66 79 4.9E-29 T 31-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 81 91 4.9E-29 T 31-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 PRINTS PR00606 Class ID cytochrome C signature 43 56 4.9E-29 T 31-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Y89_0539 0c22eb0a87ea5a6e9f8fc615a0473325 104 SUPERFAMILY SSF46626 25 103 2.22E-20 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.984 T 31-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 Gene3D G3DSA:3.50.30.80 419 571 6.8E-54 T 31-10-2018 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 Pfam PF00920 Dehydratase family 34 603 2.1E-219 T 31-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 5.1E-252 T 31-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 SUPERFAMILY SSF52016 419 606 1.33E-59 T 31-10-2018 Y89_0374 54167a1d134de0df3960476e03ccfc27 612 SUPERFAMILY SSF143975 3 418 2.35E-137 T 31-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Y89_1150 b265ef03eee2d5d9bacc977c6f17e420 468 Gene3D G3DSA:1.20.1250.20 6 239 3.4E-84 T 31-10-2018 Y89_1150 b265ef03eee2d5d9bacc977c6f17e420 468 TIGRFAM TIGR00886 2A0108: nitrite transporter 38 420 1.7E-119 T 31-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 Y89_1150 b265ef03eee2d5d9bacc977c6f17e420 468 Gene3D G3DSA:1.20.1250.20 240 467 6.8E-76 T 31-10-2018 Y89_1150 b265ef03eee2d5d9bacc977c6f17e420 468 SUPERFAMILY SSF103473 21 460 1.57E-36 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1150 b265ef03eee2d5d9bacc977c6f17e420 468 Pfam PF07690 Major Facilitator Superfamily 46 378 1.2E-12 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2846 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 53 66 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_2846 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 242 251 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_2846 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:1.10.10.60 279 354 5.0E-6 T 31-10-2018 Y89_2846 451a560615bba954f0af31adc7015f66 376 SMART SM00382 49 192 6.9E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2846 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:1.10.8.60 201 278 9.8E-24 T 31-10-2018 Y89_2846 451a560615bba954f0af31adc7015f66 376 SUPERFAMILY SSF46689 242 350 6.27E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2846 451a560615bba954f0af31adc7015f66 376 Pfam PF00158 Sigma-54 interaction domain 32 195 2.0E-69 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_2846 451a560615bba954f0af31adc7015f66 376 SUPERFAMILY SSF52540 33 270 2.95E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2846 451a560615bba954f0af31adc7015f66 376 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 115 130 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_2846 451a560615bba954f0af31adc7015f66 376 Gene3D G3DSA:3.40.50.300 19 200 1.1E-63 T 31-10-2018 Y89_1543 a179578addc1280a43e92590a28eb4ab 76 SUPERFAMILY SSF118001 1 74 3.79E-26 T 31-10-2018 IPR036685 YehU-like superfamily Y89_1543 a179578addc1280a43e92590a28eb4ab 76 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 2.9E-25 T 31-10-2018 IPR010648 Uncharacterised protein family UPF0270 Y89_1543 a179578addc1280a43e92590a28eb4ab 76 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 63 3.0E-30 T 31-10-2018 IPR010648 Uncharacterised protein family UPF0270 Y89_1543 a179578addc1280a43e92590a28eb4ab 76 Gene3D G3DSA:1.10.10.610 1 76 1.4E-33 T 31-10-2018 IPR036685 YehU-like superfamily Y89_1543 a179578addc1280a43e92590a28eb4ab 76 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 69 24.212 T 31-10-2018 IPR010648 Uncharacterised protein family UPF0270 Y89_1543 a179578addc1280a43e92590a28eb4ab 76 PIRSF PIRSF006169 1 75 2.0E-29 T 31-10-2018 IPR010648 Uncharacterised protein family UPF0270 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 1.4E-67 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 31.922 T 31-10-2018 IPR033747 Class I PurE Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 PIRSF PIRSF001338 1 161 6.9E-66 T 31-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 SMART SM01001 3 154 3.4E-102 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Pfam PF00731 AIR carboxylase 5 152 5.2E-64 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 SUPERFAMILY SSF52255 4 160 3.4E-67 T 31-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Y89_6165 5ca13609e1a3a8b761c3ffb76e5ec6a8 163 Gene3D G3DSA:3.40.50.7700 1 163 2.6E-73 T 31-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:3.40.190.10 92 286 8.5E-67 T 31-10-2018 Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 SUPERFAMILY SSF46785 4 111 1.28E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 SUPERFAMILY SSF53850 89 291 1.99E-49 T 31-10-2018 Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 1.2E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:1.10.10.10 3 91 2.5E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 Gene3D G3DSA:3.40.190.10 163 259 8.5E-67 T 31-10-2018 Y89_1396 bb862786c70eed3ef6a9ee78685c02b9 302 Pfam PF03466 LysR substrate binding domain 88 288 2.9E-49 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3919 69d032fbfd855b95b4ebd21089000b4f 487 Pfam PF00171 Aldehyde dehydrogenase family 16 473 1.4E-182 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3919 69d032fbfd855b95b4ebd21089000b4f 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_3919 69d032fbfd855b95b4ebd21089000b4f 487 Gene3D G3DSA:3.40.605.10 19 470 1.7E-197 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_3919 69d032fbfd855b95b4ebd21089000b4f 487 Gene3D G3DSA:3.40.309.10 250 442 1.7E-197 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_3919 69d032fbfd855b95b4ebd21089000b4f 487 SUPERFAMILY SSF53720 5 476 4.58E-175 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4301 77462f223b16f4ff0a085f40d6a4923d 154 Pfam PF05433 Glycine zipper 2TM domain 61 100 2.0E-7 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 SUPERFAMILY SSF141729 58 176 1.44E-28 T 31-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Gene3D G3DSA:2.60.40.2070 756 839 4.1E-13 T 31-10-2018 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF00577 Outer membrane usher protein 199 749 6.4E-165 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF13953 PapC C-terminal domain 759 820 3.9E-15 T 31-10-2018 IPR025949 PapC-like, C-terminal domain Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Gene3D G3DSA:2.60.40.3110 271 360 2.8E-34 T 31-10-2018 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 313 323 - T 31-10-2018 IPR018030 Fimbrial membrane usher, conserved site Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Gene3D G3DSA:2.60.40.2610 664 754 2.6E-29 T 31-10-2018 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Pfam PF13954 PapC N-terminal domain 36 184 5.9E-41 T 31-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 Y89_4363 19e6fdc92cd54a19b2573742d08e2765 839 Gene3D G3DSA:3.10.20.410 34 162 1.8E-29 T 31-10-2018 Y89_5176 698b80fc6400b24b19b8cd4096db5b4e 322 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site Y89_5176 698b80fc6400b24b19b8cd4096db5b4e 322 Gene3D G3DSA:1.10.600.10 1 322 3.1E-109 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily Y89_5176 698b80fc6400b24b19b8cd4096db5b4e 322 Pfam PF00348 Polyprenyl synthetase 31 273 4.2E-71 T 31-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Y89_5176 698b80fc6400b24b19b8cd4096db5b4e 322 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site Y89_5176 698b80fc6400b24b19b8cd4096db5b4e 322 SUPERFAMILY SSF48576 5 321 1.12E-97 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily Y89_0937 2372f7e327a9b0bb796d175328ca2049 274 Pfam PF17409 MoaF C-terminal domain 158 270 1.1E-49 T 31-10-2018 IPR035348 MoaF, C-terminal domain Y89_0937 2372f7e327a9b0bb796d175328ca2049 274 Pfam PF10703 MoaF N-terminal domain 8 116 2.7E-34 T 31-10-2018 IPR024724 Molybdenum cofactor biosynthesis protein F, N-terminal Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF00575 S1 RNA binding domain 135 197 7.6E-8 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.300.20 201 279 9.8E-29 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 442 491 1.1E-21 T 31-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 415 1.4E-21 T 31-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 344 5.4E-123 T 31-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF13184 NusA-like KH domain 232 299 4.1E-26 T 31-10-2018 IPR025249 KH domain, NusA-like GO:0003723 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF08529 NusA N-terminal domain 4 125 5.0E-38 T 31-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:1.10.150.20 356 423 7.9E-29 T 31-10-2018 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SMART SM00316 135 202 4.7E-12 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF69705 1 128 7.72E-39 T 31-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.300.20 280 348 1.4E-24 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:1.10.150.20 433 491 2.7E-21 T 31-10-2018 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF54814 281 344 1.5E-14 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF54814 202 280 1.63E-27 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:2.40.50.140 137 200 5.0E-21 T 31-10-2018 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Pfam PF14520 Helix-hairpin-helix domain 434 488 9.9E-10 T 31-10-2018 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Gene3D G3DSA:3.30.1480.10 1 131 2.4E-42 T 31-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF47794 432 492 1.38E-15 T 31-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 412 28.844 T 31-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF47794 357 418 2.2E-17 T 31-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Y89_5358 c19e5ebd80129e19f231dbf7f075f7b0 493 SUPERFAMILY SSF50249 134 201 3.82E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0134 67e9474a14afa43bd884ef472c570443 302 SUPERFAMILY SSF46785 4 111 1.75E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0134 67e9474a14afa43bd884ef472c570443 302 Gene3D G3DSA:3.40.190.290 91 292 9.6E-54 T 31-10-2018 Y89_0134 67e9474a14afa43bd884ef472c570443 302 SUPERFAMILY SSF53850 90 295 1.01E-38 T 31-10-2018 Y89_0134 67e9474a14afa43bd884ef472c570443 302 Gene3D G3DSA:1.10.10.10 3 89 8.1E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0134 67e9474a14afa43bd884ef472c570443 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0134 67e9474a14afa43bd884ef472c570443 302 Pfam PF03466 LysR substrate binding domain 88 293 8.0E-41 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 198 1.4E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 Gene3D G3DSA:3.40.50.2300 2 128 3.7E-23 T 31-10-2018 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 Pfam PF00072 Response regulator receiver domain 5 117 7.7E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 SMART SM00448 3 117 1.8E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 Gene3D G3DSA:1.10.10.10 136 206 1.0E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 9.1E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 9.1E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 9.1E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 SUPERFAMILY SSF52172 3 127 8.97E-23 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 SMART SM00421 143 200 2.8E-20 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3952 4fe485549e41b6e4f123717ac7f5a351 210 SUPERFAMILY SSF46894 136 201 2.11E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_4945 d3532d0b384f66ccea2e6536da21d9bb 269 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4945 d3532d0b384f66ccea2e6536da21d9bb 269 Pfam PF00005 ABC transporter 25 172 1.2E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4945 d3532d0b384f66ccea2e6536da21d9bb 269 SUPERFAMILY SSF52540 8 234 1.74E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4945 d3532d0b384f66ccea2e6536da21d9bb 269 SMART SM00382 33 222 2.1E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4945 d3532d0b384f66ccea2e6536da21d9bb 269 Gene3D G3DSA:3.40.50.300 7 254 5.2E-64 T 31-10-2018 Y89_3618 ad7585a900676877851904771c7c91a3 140 Gene3D G3DSA:3.30.1460.10 1 126 1.5E-51 T 31-10-2018 Y89_3618 ad7585a900676877851904771c7c91a3 140 SUPERFAMILY SSF69635 2 126 5.65E-42 T 31-10-2018 Y89_3618 ad7585a900676877851904771c7c91a3 140 TIGRFAM TIGR02513 type_III_yscB: type III secretion system chaperone, YscB family 2 140 2.7E-58 T 31-10-2018 IPR013353 Type III secretion system chaperone YscB Y89_3618 ad7585a900676877851904771c7c91a3 140 Pfam PF05932 Tir chaperone protein (CesT) family 3 120 1.4E-28 T 31-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 Pfam PF02321 Outer membrane efflux protein 64 257 1.8E-26 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 Pfam PF02321 Outer membrane efflux protein 286 467 3.3E-26 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 Gene3D G3DSA:2.20.200.10 101 358 5.5E-141 T 31-10-2018 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 SUPERFAMILY SSF56954 4 472 2.09E-112 T 31-10-2018 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 469 9.1E-119 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_2184 bdac3b40226ff3397d921d3d27640812 479 Gene3D G3DSA:1.20.1600.10 54 470 5.5E-141 T 31-10-2018 Y89_5529 24fd162ceb419f97a4a790ebc9e7761c 359 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 44 352 8.3E-134 T 31-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC Y89_5529 24fd162ceb419f97a4a790ebc9e7761c 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 341 8.7E-42 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_4632 a5b4796f221791e73545446548171892 642 Pfam PF00589 Phage integrase family 211 390 8.0E-20 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_4632 a5b4796f221791e73545446548171892 642 Gene3D G3DSA:1.10.443.10 210 400 8.8E-17 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_4632 a5b4796f221791e73545446548171892 642 Pfam PF13356 Arm DNA-binding domain 2 86 4.2E-14 T 31-10-2018 IPR025166 Integrase, DNA-binding domain Y89_4632 a5b4796f221791e73545446548171892 642 Gene3D G3DSA:1.10.150.130 97 209 1.4E-18 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_4632 a5b4796f221791e73545446548171892 642 Gene3D G3DSA:3.30.160.390 1 96 1.2E-26 T 31-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Y89_4632 a5b4796f221791e73545446548171892 642 SUPERFAMILY SSF56349 98 400 1.91E-45 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 SUPERFAMILY SSF51126 45 339 3.14E-49 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF05860 haemagglutination activity domain 53 164 3.6E-28 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 87 160 1.1E-24 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Gene3D G3DSA:2.160.20.110 926 1015 2.7E-6 T 31-10-2018 Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Gene3D G3DSA:2.160.20.110 714 861 3.8E-12 T 31-10-2018 Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Gene3D G3DSA:2.160.20.110 1016 1140 1.1E-5 T 31-10-2018 Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF07581 The GLUG motif 1061 1087 0.0024 T 31-10-2018 IPR011493 GLUG Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF07581 The GLUG motif 1004 1027 0.0018 T 31-10-2018 IPR011493 GLUG Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF07581 The GLUG motif 975 1000 0.0022 T 31-10-2018 IPR011493 GLUG Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF07581 The GLUG motif 1149 1174 1.6E-5 T 31-10-2018 IPR011493 GLUG Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.2E-8 T 31-10-2018 IPR024973 ESPR domain Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 SMART SM00912 51 165 4.0E-45 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_5052 dd2b50f26abf57a9521bf5e4ea049669 1357 Gene3D G3DSA:2.160.20.10 54 419 2.3E-77 T 31-10-2018 IPR012334 Pectin lyase fold Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Gene3D G3DSA:3.30.365.10 466 612 3.1E-284 T 31-10-2018 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 SUPERFAMILY SSF56003 148 780 5.1E-208 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 40 146 8.2E-22 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 168 710 1.2E-209 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 SUPERFAMILY SSF54665 24 148 9.03E-38 T 31-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 26 782 0.0 T 31-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Gene3D G3DSA:3.90.1170.50 26 147 3.1E-284 T 31-10-2018 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Gene3D G3DSA:3.30.365.10 161 414 3.1E-284 T 31-10-2018 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Gene3D G3DSA:3.30.365.10 195 289 3.1E-284 T 31-10-2018 Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 SMART SM01008 40 147 2.0E-37 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_3815 31342fd49622069d498e6d61ced8e4a4 799 Gene3D G3DSA:3.30.365.10 148 774 3.1E-284 T 31-10-2018 Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 175 203 - T 31-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 164 1.1E-8 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 173 199 9.5E-5 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 SUPERFAMILY SSF51161 10 219 8.46E-41 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 Gene3D G3DSA:3.40.50.20 4 99 1.6E-16 T 31-10-2018 Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 Gene3D G3DSA:2.160.10.10 101 209 4.1E-30 T 31-10-2018 Y89_1861 80266f646f2718f5b9603e83fe0d0ff0 222 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 11 211 1.3E-63 T 31-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like Y89_4832 f02cbbd3940650c302d726d303a356fb 371 SUPERFAMILY SSF56601 11 360 8.45E-78 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4832 f02cbbd3940650c302d726d303a356fb 371 Gene3D G3DSA:3.40.710.10 45 359 2.0E-71 T 31-10-2018 Y89_4832 f02cbbd3940650c302d726d303a356fb 371 Pfam PF00144 Beta-lactamase 58 350 5.2E-45 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 SUPERFAMILY SSF58104 232 541 7.85E-71 T 31-10-2018 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 184 3.4E-9 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 505 5.6E-41 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 Pfam PF00672 HAMP domain 212 258 1.8E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 Gene3D G3DSA:1.10.287.950 211 541 1.0E-67 T 31-10-2018 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 187 207 2.5E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 2.5E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.5E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 2.5E-21 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 SMART SM00283 279 540 2.1E-70 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_5585 f84b68aa9d115f8c41e49c6339a548c4 541 SMART SM00304 211 264 4.0E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1654 480227922663675ff936f20325d9a6b4 434 Gene3D G3DSA:1.20.1250.20 4 198 1.3E-12 T 31-10-2018 Y89_1654 480227922663675ff936f20325d9a6b4 434 Pfam PF07690 Major Facilitator Superfamily 206 377 9.0E-17 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1654 480227922663675ff936f20325d9a6b4 434 Gene3D G3DSA:1.20.1250.20 202 377 1.1E-22 T 31-10-2018 Y89_1654 480227922663675ff936f20325d9a6b4 434 SUPERFAMILY SSF103473 8 374 3.4E-43 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 175 226 5.3E-15 T 31-10-2018 IPR004176 Clp, N-terminal Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 100 147 1.1E-7 T 31-10-2018 IPR004176 Clp, N-terminal Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:1.10.1780.10 85 227 1.4E-32 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:3.40.50.300 242 433 2.3E-70 T 31-10-2018 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SMART SM01086 794 884 1.7E-24 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:1.10.8.60 434 565 2.3E-41 T 31-10-2018 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:4.10.860.10 493 551 2.3E-41 T 31-10-2018 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:1.10.8.60 794 885 7.7E-22 T 31-10-2018 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 670 688 6.3E-40 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 625 643 6.3E-40 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 699 717 6.3E-40 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 732 746 6.3E-40 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SUPERFAMILY SSF52540 242 586 6.23E-77 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Pfam PF07724 AAA domain (Cdc48 subfamily) 620 788 5.3E-54 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SUPERFAMILY SSF81923 87 228 5.3E-27 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Gene3D G3DSA:3.40.50.300 574 793 1.0E-87 T 31-10-2018 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SUPERFAMILY SSF52540 570 881 1.57E-78 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 794 873 7.3E-22 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 655 673 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SMART SM00382 281 429 5.2E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 SMART SM00382 621 795 4.7E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0480 fe6e7792c2e898437a51a61e980c9d6d 932 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 286 419 1.3E-15 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3920 f80a86b055631f2065111136b1bad075 339 SUPERFAMILY SSF51182 213 320 4.98E-10 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3920 f80a86b055631f2065111136b1bad075 339 Gene3D G3DSA:2.60.120.10 251 326 3.9E-6 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1430 c25cc82b9ff705e779448e53168095fe 357 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 321 327 - T 31-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 272 350 1.8E-33 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 SUPERFAMILY SSF46767 271 351 1.09E-29 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Pfam PF12833 Helix-turn-helix domain 110 186 4.2E-15 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Gene3D G3DSA:3.40.10.10 12 80 2.7E-26 T 31-10-2018 IPR035451 Ada-like domain superfamily Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Gene3D G3DSA:1.10.10.60 92 188 5.5E-12 T 31-10-2018 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 SUPERFAMILY SSF53155 191 274 8.04E-10 T 31-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 PIRSF PIRSF000409 1 357 1.3E-148 T 31-10-2018 IPR016221 Bifunctional regulatory protein Ada Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Gene3D G3DSA:3.30.160.70 189 266 9.7E-7 T 31-10-2018 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 272 351 8.3E-30 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 SUPERFAMILY SSF57884 9 87 5.89E-31 T 31-10-2018 IPR035451 Ada-like domain superfamily Y89_1430 c25cc82b9ff705e779448e53168095fe 357 SMART SM00342 103 184 5.2E-6 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Pfam PF02805 Metal binding domain of Ada 16 78 3.8E-27 T 31-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Y89_1430 c25cc82b9ff705e779448e53168095fe 357 Gene3D G3DSA:1.10.10.10 270 355 1.3E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2329 24560bc4d5ad57fb981908ad4c423ced 233 Gene3D G3DSA:3.40.50.720 1 202 8.5E-47 T 31-10-2018 Y89_2329 24560bc4d5ad57fb981908ad4c423ced 233 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 94 7.1E-15 T 31-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Y89_2329 24560bc4d5ad57fb981908ad4c423ced 233 SUPERFAMILY SSF51735 1 202 1.04E-31 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Pfam PF07695 7TM diverse intracellular signalling 183 383 5.3E-35 T 31-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SUPERFAMILY SSF52172 789 913 1.71E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SMART SM00388 407 472 2.6E-23 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SUPERFAMILY SSF47384 395 473 3.73E-20 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Gene3D G3DSA:2.60.40.2380 32 173 1.8E-28 T 31-10-2018 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SUPERFAMILY SSF55874 461 633 5.37E-49 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Gene3D G3DSA:3.40.50.12740 790 918 3.3E-38 T 31-10-2018 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Pfam PF07696 7TMR-DISM extracellular 2 36 168 3.0E-32 T 31-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Pfam PF00072 Response regulator receiver domain 791 907 7.5E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 574 3.0E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 632 3.0E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 588 3.0E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 613 3.0E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 634 2.4E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Gene3D G3DSA:3.30.565.10 471 636 7.5E-55 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SMART SM00448 789 907 3.4E-34 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 SMART SM00387 519 635 8.2E-41 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Gene3D G3DSA:1.10.287.130 379 470 1.7E-25 T 31-10-2018 Y89_1544 0a4a92bb22c47b2577f90a6df6bc01f2 918 Pfam PF00512 His Kinase A (phospho-acceptor) domain 407 472 1.8E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4732 118f3d07486bf3da190ecf2b82c1a104 221 SMART SM00342 132 214 3.0E-9 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4732 118f3d07486bf3da190ecf2b82c1a104 221 Gene3D G3DSA:1.10.10.60 115 212 6.8E-15 T 31-10-2018 Y89_4732 118f3d07486bf3da190ecf2b82c1a104 221 Pfam PF12833 Helix-turn-helix domain 138 208 9.2E-12 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0692 2d1598e790ee3c45e6ba11d3432276a2 108 SUPERFAMILY SSF160719 10 106 4.58E-25 T 31-10-2018 Y89_0692 2d1598e790ee3c45e6ba11d3432276a2 108 Pfam PF04965 Gene 25-like lysozyme 15 81 4.9E-16 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y89_0692 2d1598e790ee3c45e6ba11d3432276a2 108 Gene3D G3DSA:3.10.450.40 3 106 1.1E-19 T 31-10-2018 Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 Pfam PF02397 Bacterial sugar transferase 284 472 1.3E-67 T 31-10-2018 IPR003362 Bacterial sugar transferase Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 46 478 4.0E-148 T 31-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 Pfam PF13727 CoA-binding domain 70 248 1.1E-27 T 31-10-2018 Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 Gene3D G3DSA:3.40.50.720 150 269 6.7E-21 T 31-10-2018 Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 SUPERFAMILY SSF51735 151 267 3.46E-9 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3024 6abafe36a7138d962bdf7a8061468f66 478 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 34 477 1.3E-136 T 31-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 PIRSF PIRSF000429 1 392 1.0E-131 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 Gene3D G3DSA:3.40.47.10 6 276 1.5E-158 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 SUPERFAMILY SSF53901 3 270 4.32E-93 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 Pfam PF02803 Thiolase, C-terminal domain 271 390 2.6E-50 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.2E-106 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.9E-148 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 Gene3D G3DSA:3.40.47.10 126 388 1.5E-158 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_3322 73cdeb543e5969917d8027f94f7bfa0c 393 SUPERFAMILY SSF53901 272 390 3.33E-43 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2346 3ce79ad99b346c95166fc734ba4e7548 366 Pfam PF14072 DNA-sulfur modification-associated 9 348 2.2E-112 T 31-10-2018 IPR017642 DNA sulphur modification protein DndB Y89_2346 3ce79ad99b346c95166fc734ba4e7548 366 TIGRFAM TIGR03187 DGQHR: DGQHR domain 11 288 2.0E-85 T 31-10-2018 IPR017601 DGQHR-containing domain Y89_2346 3ce79ad99b346c95166fc734ba4e7548 366 TIGRFAM TIGR03233 DNA_S_dndB: DNA sulfur modification protein DndB 5 361 1.8E-176 T 31-10-2018 IPR017642 DNA sulphur modification protein DndB Y89_6206 831931960bb06962fbb78c054d79aaae 139 Gene3D G3DSA:2.170.150.70 6 114 1.0E-16 T 31-10-2018 Y89_6206 831931960bb06962fbb78c054d79aaae 139 SUPERFAMILY SSF51316 1 130 1.03E-41 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_6206 831931960bb06962fbb78c054d79aaae 139 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 113 6.2E-19 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y89_2994 45153c0eda924a8fecc19fdc8c70c200 260 Gene3D G3DSA:3.20.20.150 1 260 5.5E-83 T 31-10-2018 Y89_2994 45153c0eda924a8fecc19fdc8c70c200 260 Pfam PF01261 Xylose isomerase-like TIM barrel 111 198 5.5E-7 T 31-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y89_2994 45153c0eda924a8fecc19fdc8c70c200 260 SUPERFAMILY SSF51658 5 251 1.87E-68 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_3946 a8fe28504b7b9e8011b8ed68b0475609 210 Gene3D G3DSA:1.10.357.10 21 210 1.0E-80 T 31-10-2018 Y89_3946 a8fe28504b7b9e8011b8ed68b0475609 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.1E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3946 a8fe28504b7b9e8011b8ed68b0475609 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.1E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3946 a8fe28504b7b9e8011b8ed68b0475609 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 4.2E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3946 a8fe28504b7b9e8011b8ed68b0475609 210 SUPERFAMILY SSF46689 16 90 9.71E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1319 c34911076ffd3ac767afa7a52e266108 169 Pfam PF01584 CheW-like domain 15 153 8.6E-25 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1319 c34911076ffd3ac767afa7a52e266108 169 SMART SM00260 10 151 1.1E-10 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_1319 c34911076ffd3ac767afa7a52e266108 169 Gene3D G3DSA:2.40.50.180 33 105 5.5E-17 T 31-10-2018 Y89_1319 c34911076ffd3ac767afa7a52e266108 169 Gene3D G3DSA:2.30.30.40 17 119 5.5E-17 T 31-10-2018 Y89_1319 c34911076ffd3ac767afa7a52e266108 169 SUPERFAMILY SSF50341 15 156 2.22E-25 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_6295 54d82bce207089d40a4917f143e29be5 286 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 272 285 - T 31-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 Gene3D G3DSA:1.10.287.80 6 282 2.0E-108 T 31-10-2018 Y89_6295 54d82bce207089d40a4917f143e29be5 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 286 1.1E-106 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 4.4E-37 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 4.4E-37 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 4.4E-37 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 4.4E-37 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 SUPERFAMILY SSF52943 2 286 1.83E-95 T 31-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 286 36.72 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 Pfam PF00231 ATP synthase 5 285 3.4E-96 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Y89_6295 54d82bce207089d40a4917f143e29be5 286 Gene3D G3DSA:3.40.1380.10 61 205 2.0E-108 T 31-10-2018 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 SUPERFAMILY SSF53474 40 311 9.59E-64 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 131 144 8.4E-15 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 257 271 8.4E-15 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 145 158 8.4E-15 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 101 8.4E-15 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 Gene3D G3DSA:3.40.50.1820 27 313 3.3E-67 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 145 158 2.2E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 67 85 2.2E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 255 271 2.2E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 131 144 2.2E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 PRINTS PR00412 Epoxide hydrolase signature 288 310 2.2E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_4531 bbd350abc15aaeb3dfcaeb8cb2d0d04e 313 Pfam PF00561 alpha/beta hydrolase fold 61 297 9.9E-21 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4479 53239c734c6b92580bf673e4162968eb 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 2.8E-9 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4479 53239c734c6b92580bf673e4162968eb 126 SUPERFAMILY SSF54593 1 124 2.69E-27 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4479 53239c734c6b92580bf673e4162968eb 126 Gene3D G3DSA:3.10.180.10 7 125 1.6E-41 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_0338 7ecf07cddf9b19006018c4eefa038d4c 221 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 20 220 5.7E-54 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_0338 7ecf07cddf9b19006018c4eefa038d4c 221 Gene3D G3DSA:3.90.850.10 1 221 2.1E-68 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0338 7ecf07cddf9b19006018c4eefa038d4c 221 SUPERFAMILY SSF56529 12 220 1.26E-65 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_3035 c63cfc2bc742fa2cdb9df729c767014a 320 Gene3D G3DSA:2.130.10.10 26 130 1.7E-5 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_3035 c63cfc2bc742fa2cdb9df729c767014a 320 SUPERFAMILY SSF110296 34 288 6.02E-50 T 31-10-2018 Y89_3035 c63cfc2bc742fa2cdb9df729c767014a 320 Pfam PF14870 Photosynthesis system II assembly factor YCF48 76 205 2.0E-16 T 31-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Y89_3035 c63cfc2bc742fa2cdb9df729c767014a 320 Gene3D G3DSA:2.130.10.10 133 310 1.1E-10 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_5314 6e76954f8f69b128c04643028582135b 115 SUPERFAMILY SSF141571 34 91 6.93E-12 T 31-10-2018 Y89_5314 6e76954f8f69b128c04643028582135b 115 PIRSF PIRSF029688 1 115 4.9E-72 T 31-10-2018 IPR016933 Pentapeptide repeat-containing uncharacterised conserved protein UCP029688 Y89_5314 6e76954f8f69b128c04643028582135b 115 Gene3D G3DSA:2.160.20.80 17 91 4.4E-13 T 31-10-2018 Y89_5314 6e76954f8f69b128c04643028582135b 115 Pfam PF00805 Pentapeptide repeats (8 copies) 54 90 7.2E-10 T 31-10-2018 IPR001646 Pentapeptide repeat Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 Gene3D G3DSA:1.20.120.910 1 74 3.6E-25 T 31-10-2018 Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 12 66 6.5E-17 T 31-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 SUPERFAMILY SSF57716 38 73 3.56E-8 T 31-10-2018 Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 PRINTS PR00618 DksA/TraR zinc finger signature 39 50 4.2E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 PRINTS PR00618 DksA/TraR zinc finger signature 51 63 4.2E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 39 63 - T 31-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y89_5539 90bcbb8301d2a3cc794f7987d4f65d0e 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 69 1.9E-13 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 Pfam PF01761 3-dehydroquinate synthase 65 323 3.0E-108 T 31-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 348 2.5E-115 T 31-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 PIRSF PIRSF001455 3 359 1.6E-106 T 31-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 SUPERFAMILY SSF56796 3 354 6.28E-119 T 31-10-2018 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 358 72.832 T 31-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 Gene3D G3DSA:1.20.1090.10 171 359 2.1E-62 T 31-10-2018 Y89_5710 4b577e706aa0f5d7043f6266923f9813 368 Gene3D G3DSA:3.40.50.1970 1 170 1.4E-66 T 31-10-2018 Y89_4421 87c60bed32112d22694f62836f4fbc61 442 Pfam PF02706 Chain length determinant protein 13 81 5.2E-14 T 31-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Y89_4421 87c60bed32112d22694f62836f4fbc61 442 Pfam PF13807 G-rich domain on putative tyrosine kinase 368 415 1.4E-9 T 31-10-2018 IPR032807 Tyrosine kinase, G-rich domain Y89_4421 87c60bed32112d22694f62836f4fbc61 442 SUPERFAMILY SSF160355 71 220 1.19E-11 T 31-10-2018 Y89_4421 87c60bed32112d22694f62836f4fbc61 442 SUPERFAMILY SSF160355 221 389 1.57E-16 T 31-10-2018 Y89_4421 87c60bed32112d22694f62836f4fbc61 442 Gene3D G3DSA:3.30.1890.10 52 221 6.2E-8 T 31-10-2018 Y89_4421 87c60bed32112d22694f62836f4fbc61 442 Gene3D G3DSA:3.30.1890.10 222 342 6.3E-7 T 31-10-2018 Y89_5766 0229a2302441b6c2cb73e60df59b997f 283 Gene3D G3DSA:1.10.3720.10 85 277 4.5E-39 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5766 0229a2302441b6c2cb73e60df59b997f 283 SUPERFAMILY SSF161098 87 271 9.42E-43 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5766 0229a2302441b6c2cb73e60df59b997f 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 268 2.0E-26 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0642 468b6d9a8ca850cbe3cd912348b8e858 896 SUPERFAMILY SSF56731 176 279 2.62E-7 T 31-10-2018 Y89_0642 468b6d9a8ca850cbe3cd912348b8e858 896 Pfam PF13155 Toprim-like 191 280 1.7E-6 T 31-10-2018 Y89_0642 468b6d9a8ca850cbe3cd912348b8e858 896 Gene3D G3DSA:3.40.1360.10 177 292 3.7E-11 T 31-10-2018 Y89_3867 7c34b97668297b0f70acb57e5e16ab0b 184 Gene3D G3DSA:3.40.630.30 4 183 2.7E-52 T 31-10-2018 Y89_3867 7c34b97668297b0f70acb57e5e16ab0b 184 SUPERFAMILY SSF55729 5 177 4.85E-51 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3867 7c34b97668297b0f70acb57e5e16ab0b 184 Pfam PF13302 Acetyltransferase (GNAT) domain 13 153 2.5E-35 T 31-10-2018 IPR000182 GNAT domain Y89_3916 4f5713068d96d17633354276b9db5f34 103 Gene3D G3DSA:3.30.70.1060 3 100 7.2E-29 T 31-10-2018 Y89_3916 4f5713068d96d17633354276b9db5f34 103 Pfam PF03795 YCII-related domain 5 93 4.2E-13 T 31-10-2018 IPR005545 YCII-related Y89_3916 4f5713068d96d17633354276b9db5f34 103 SUPERFAMILY SSF54909 3 94 1.31E-20 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 Gene3D G3DSA:3.40.50.2300 2 132 1.4E-30 T 31-10-2018 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 PIRSF PIRSF000876 1 345 6.1E-136 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 Pfam PF00072 Response regulator receiver domain 5 107 1.6E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 SMART SM00448 3 118 5.4E-20 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 SUPERFAMILY SSF52172 1 107 6.4E-27 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 SUPERFAMILY SSF52738 154 341 1.44E-71 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 Pfam PF01339 CheB methylesterase 158 336 2.3E-62 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 341 41.843 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Y89_0185 6d9ce055698b4c5e1ccca8c94f78aaf6 349 Gene3D G3DSA:3.40.50.180 147 345 1.8E-79 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal Y89_2803 9d0cf92dee7cc36738c9c63a150b74a1 275 SUPERFAMILY SSF53328 49 273 1.24E-16 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_2803 9d0cf92dee7cc36738c9c63a150b74a1 275 Pfam PF00551 Formyl transferase 122 251 1.3E-5 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_2803 9d0cf92dee7cc36738c9c63a150b74a1 275 Gene3D G3DSA:3.40.50.170 33 274 4.6E-12 T 31-10-2018 Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 Pfam PF03466 LysR substrate binding domain 101 302 2.6E-25 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 Gene3D G3DSA:3.40.190.290 104 304 2.9E-12 T 31-10-2018 Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 SUPERFAMILY SSF53850 97 302 4.71E-24 T 31-10-2018 Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 76 3.8E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 Gene3D G3DSA:1.10.10.10 15 102 5.1E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0146 88ef7ef97b92cde4e92600ec88258018 305 SUPERFAMILY SSF46785 16 101 3.44E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3061 cf77b7dfb95ce3f9e491f4b3588a7bdb 206 Pfam PF04403 Paraquat-inducible protein A 44 198 8.8E-56 T 31-10-2018 IPR007498 Intermembrane transport protein PqiA-like Y89_1153 9b6a6d035f741195277fd29bd15caf20 246 Pfam PF02613 Nitrate reductase delta subunit 39 161 1.2E-11 T 31-10-2018 IPR020945 DMSO/Nitrate reductase chaperone Y89_1153 9b6a6d035f741195277fd29bd15caf20 246 Gene3D G3DSA:1.20.120.700 8 164 8.6E-14 T 31-10-2018 Y89_1153 9b6a6d035f741195277fd29bd15caf20 246 Gene3D G3DSA:1.10.4070.10 72 153 8.6E-14 T 31-10-2018 Y89_1153 9b6a6d035f741195277fd29bd15caf20 246 SUPERFAMILY SSF89155 6 166 2.88E-30 T 31-10-2018 IPR036411 TorD-like superfamily Y89_1153 9b6a6d035f741195277fd29bd15caf20 246 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 13 164 2.1E-35 T 31-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 Y89_6394 58f056e7179fd4802a61bceb6ca2e1ba 294 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 11 275 8.3E-114 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_6394 58f056e7179fd4802a61bceb6ca2e1ba 294 Pfam PF11920 Protein of unknown function (DUF3438) 9 284 1.4E-120 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_1946 3b7b9151bf6a2ea912532b9bab63fff9 340 SMART SM00327 89 289 1.0E-23 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_1946 3b7b9151bf6a2ea912532b9bab63fff9 340 Pfam PF00092 von Willebrand factor type A domain 91 282 8.5E-32 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_1946 3b7b9151bf6a2ea912532b9bab63fff9 340 SUPERFAMILY SSF53300 86 266 1.05E-38 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_1946 3b7b9151bf6a2ea912532b9bab63fff9 340 Gene3D G3DSA:3.40.50.410 89 289 1.7E-53 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 SUPERFAMILY SSF51569 3 292 4.5E-80 T 31-10-2018 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 PIRSF PIRSF001365 3 301 1.7E-75 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 SMART SM01130 6 294 5.4E-86 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 Gene3D G3DSA:3.20.20.70 4 297 1.9E-82 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 Pfam PF00701 Dihydrodipicolinate synthetase family 8 291 4.7E-59 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 1.2E-9 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 1.2E-9 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_4097 8e2efb2fd6fad49c914752e400d2f110 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 1.2E-9 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_1617 963766858a132abff7cf2f686f71d620 636 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 15 42 0.0011 T 31-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y89_1617 963766858a132abff7cf2f686f71d620 636 Gene3D G3DSA:2.130.10.10 56 515 5.2E-205 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_1617 963766858a132abff7cf2f686f71d620 636 SUPERFAMILY SSF50974 60 504 3.01E-133 T 31-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Y89_1617 963766858a132abff7cf2f686f71d620 636 Hamap MF_00716 Nitrous-oxide reductase [nosZ]. 2 635 61.267 T 31-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 Y89_1617 963766858a132abff7cf2f686f71d620 636 SUPERFAMILY SSF49503 507 634 1.92E-35 T 31-10-2018 IPR008972 Cupredoxin Y89_1617 963766858a132abff7cf2f686f71d620 636 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 15 634 0.0 T 31-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 Y89_1617 963766858a132abff7cf2f686f71d620 636 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 576 627 1.0E-4 T 31-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_1617 963766858a132abff7cf2f686f71d620 636 Gene3D G3DSA:2.60.40.420 516 634 4.2E-35 T 31-10-2018 IPR008972 Cupredoxin Y89_1617 963766858a132abff7cf2f686f71d620 636 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 579 627 - T 31-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 9 259 1.3E-112 T 31-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 Gene3D G3DSA:3.40.50.1000 11 272 9.4E-99 T 31-10-2018 IPR023214 HAD superfamily Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 Gene3D G3DSA:1.10.150.240 27 104 9.4E-99 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 SUPERFAMILY SSF56784 10 262 7.24E-57 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 81 206 4.0E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 275 142.353 T 31-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 Y89_4039 9ecfbccc13cd30e230e64f8e40b67526 275 Pfam PF00702 haloacid dehalogenase-like hydrolase 14 201 6.5E-7 T 31-10-2018 Y89_4419 28366a38075821f7c04804e3610a93ff 107 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 6 89 2.9E-27 T 31-10-2018 IPR009778 Modulator of Rho-dependent transcription termination Y89_4419 28366a38075821f7c04804e3610a93ff 107 Gene3D G3DSA:2.30.30.400 7 92 1.3E-19 T 31-10-2018 IPR038626 Rof-like superfamily Y89_4419 28366a38075821f7c04804e3610a93ff 107 SUPERFAMILY SSF101744 1 89 1.83E-20 T 31-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 Y89_2064 dd7f2f04f6400ecc506dd0662c30e311 298 SMART SM00729 22 237 1.6E-29 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_2064 dd7f2f04f6400ecc506dd0662c30e311 298 SUPERFAMILY SSF102114 6 210 1.31E-31 T 31-10-2018 Y89_2064 dd7f2f04f6400ecc506dd0662c30e311 298 Pfam PF04055 Radical SAM superfamily 27 185 2.5E-18 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_2064 dd7f2f04f6400ecc506dd0662c30e311 298 Gene3D G3DSA:3.20.20.70 21 205 5.2E-17 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_6282 d907282182b53230569d17b189484869 414 Gene3D G3DSA:1.20.58.710 149 248 9.0E-94 T 31-10-2018 Y89_6282 d907282182b53230569d17b189484869 414 Gene3D G3DSA:3.40.710.10 97 392 9.0E-94 T 31-10-2018 Y89_6282 d907282182b53230569d17b189484869 414 SUPERFAMILY SSF56601 43 413 2.82E-85 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_6282 d907282182b53230569d17b189484869 414 Pfam PF00144 Beta-lactamase 95 408 1.1E-54 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 156 3.0E-10 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 7 34 3.6E-8 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 SUPERFAMILY SSF56645 36 281 4.58E-51 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 SUPERFAMILY SSF47203 289 474 5.15E-40 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:1.20.140.10 290 460 4.5E-42 T 31-10-2018 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 271 2.1E-14 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:2.40.110.10 160 289 2.1E-25 T 31-10-2018 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 451 1.5E-17 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Gene3D G3DSA:1.10.540.10 12 158 1.6E-12 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_5692 bdebeb9d702783b56c545024bf1e65a9 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 471 595 1.7E-29 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF55804 148 274 3.92E-16 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 685 704 9.5E-19 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 850 865 9.5E-19 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 833 848 9.5E-19 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 886 898 9.5E-19 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF51621 646 926 2.66E-99 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 833 851 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:3.20.20.60 626 956 3.1E-115 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF55594 285 372 4.97E-18 T 31-10-2018 IPR035895 HPr-like superfamily Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 576 587 - T 31-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:3.40.930.10 1 142 3.0E-35 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Pfam PF00381 PTS HPr component phosphorylation site 285 365 1.4E-18 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 285 364 9.4E-14 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:3.40.930.10 145 275 3.0E-5 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:3.30.1340.10 284 371 1.4E-18 T 31-10-2018 IPR035895 HPr-like superfamily Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF47831 430 537 2.22E-23 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 646 927 1.5E-102 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR00107 Phosphocarrier protein signature 337 354 6.4E-8 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR00107 Phosphocarrier protein signature 294 310 6.4E-8 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 PRINTS PR00107 Phosphocarrier protein signature 322 337 6.4E-8 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Pfam PF00391 PEP-utilising enzyme, mobile domain 545 617 8.4E-22 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 406 952 7.8E-143 T 31-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Pfam PF05524 PEP-utilising enzyme, N-terminal 405 520 9.4E-21 T 31-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 140 3.0E-27 T 31-10-2018 IPR002178 PTS EIIA type-2 domain Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:1.10.274.10 422 540 4.5E-57 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF55804 4 141 1.96E-35 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 31-10-2018 IPR002178 PTS EIIA type-2 domain Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 Gene3D G3DSA:3.50.30.10 406 625 4.5E-57 T 31-10-2018 Y89_1465 8f9174628f9f22d8dd471d7aad03903d 956 SUPERFAMILY SSF52009 519 634 5.1E-31 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 Pfam PF00202 Aminotransferase class-III 37 446 2.9E-94 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 Gene3D G3DSA:3.90.1150.10 17 448 4.2E-184 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 SUPERFAMILY SSF53383 11 449 3.81E-129 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 PIRSF PIRSF000521 143 450 6.2E-21 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 PIRSF PIRSF000521 35 154 3.8E-9 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 Gene3D G3DSA:3.40.640.10 71 345 4.2E-184 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0317 18e0fb5865e5494a89f492e35f76000c 456 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4083 1ba2ffb4def0a0bcce3855ed195dcbfd 371 Gene3D G3DSA:3.50.50.60 5 343 9.0E-72 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4083 1ba2ffb4def0a0bcce3855ed195dcbfd 371 Pfam PF01266 FAD dependent oxidoreductase 5 343 2.0E-57 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_4083 1ba2ffb4def0a0bcce3855ed195dcbfd 371 Gene3D G3DSA:3.30.9.10 81 304 9.0E-72 T 31-10-2018 Y89_4083 1ba2ffb4def0a0bcce3855ed195dcbfd 371 SUPERFAMILY SSF54373 204 304 4.58E-12 T 31-10-2018 Y89_4083 1ba2ffb4def0a0bcce3855ed195dcbfd 371 SUPERFAMILY SSF51905 4 363 1.81E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4675 2aee60d1dca296c426d5de4b9aaf400b 164 Pfam PF04002 RadC-like JAB domain 44 162 1.3E-38 T 31-10-2018 IPR025657 RadC-like JAB domain Y89_4675 2aee60d1dca296c426d5de4b9aaf400b 164 TIGRFAM TIGR00608 radc: DNA repair protein RadC 27 164 1.1E-39 T 31-10-2018 IPR001405 Uncharacterised protein family UPF0758 Y89_4675 2aee60d1dca296c426d5de4b9aaf400b 164 Gene3D G3DSA:3.40.140.10 41 164 1.1E-38 T 31-10-2018 Y89_4675 2aee60d1dca296c426d5de4b9aaf400b 164 SUPERFAMILY SSF102712 59 134 6.8E-5 T 31-10-2018 Y89_1710 bb522891c55816db9df78a419f156e84 156 Gene3D G3DSA:3.10.129.10 2 156 1.4E-51 T 31-10-2018 Y89_1710 bb522891c55816db9df78a419f156e84 156 SUPERFAMILY SSF54637 5 141 2.04E-38 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1710 bb522891c55816db9df78a419f156e84 156 PRINTS PR01483 Fatty acid synthase signature 26 48 3.0E-5 T 31-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y89_1710 bb522891c55816db9df78a419f156e84 156 PRINTS PR01483 Fatty acid synthase signature 48 69 3.0E-5 T 31-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Y89_1710 bb522891c55816db9df78a419f156e84 156 Pfam PF01575 MaoC like domain 16 116 2.4E-25 T 31-10-2018 IPR002539 MaoC-like dehydratase domain Y89_1054 92e1bb8c97ad1d5a33f226473019809e 361 PIRSF PIRSF038896 24 343 2.5E-99 T 31-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 Y89_1054 92e1bb8c97ad1d5a33f226473019809e 361 Pfam PF12706 Beta-lactamase superfamily domain 102 300 3.0E-42 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1054 92e1bb8c97ad1d5a33f226473019809e 361 SUPERFAMILY SSF56281 84 306 7.31E-32 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1054 92e1bb8c97ad1d5a33f226473019809e 361 Gene3D G3DSA:3.60.15.10 73 359 7.6E-78 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2381 df9cb733f876d8311421e36bdd38b5fe 131 Gene3D G3DSA:2.170.150.70 2 116 2.4E-19 T 31-10-2018 Y89_2381 df9cb733f876d8311421e36bdd38b5fe 131 SUPERFAMILY SSF51316 1 130 2.3E-47 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_2381 df9cb733f876d8311421e36bdd38b5fe 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 113 2.8E-21 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y89_2225 af94e70ff67304009baba9017442898b 193 SUPERFAMILY SSF109604 29 103 1.41E-8 T 31-10-2018 Y89_2225 af94e70ff67304009baba9017442898b 193 Pfam PF01966 HD domain 32 91 2.8E-8 T 31-10-2018 IPR006674 HD domain Y89_2225 af94e70ff67304009baba9017442898b 193 Gene3D G3DSA:1.10.3210.10 2 189 2.3E-59 T 31-10-2018 Y89_2225 af94e70ff67304009baba9017442898b 193 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 7 180 8.2E-76 T 31-10-2018 IPR017670 Phosphonate degradation operon associated HDIG domain protein Y89_6386 af5c0c9d18350ec6012e725a93e5b91a 493 Pfam PF13361 UvrD-like helicase C-terminal domain 375 467 3.2E-12 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_6386 af5c0c9d18350ec6012e725a93e5b91a 493 SUPERFAMILY SSF52540 2 471 7.49E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6386 af5c0c9d18350ec6012e725a93e5b91a 493 Pfam PF13245 AAA domain 10 231 1.4E-8 T 31-10-2018 Y89_6386 af5c0c9d18350ec6012e725a93e5b91a 493 Gene3D G3DSA:3.40.50.300 1 248 1.3E-22 T 31-10-2018 Y89_6386 af5c0c9d18350ec6012e725a93e5b91a 493 Gene3D G3DSA:3.40.50.300 252 484 4.5E-14 T 31-10-2018 Y89_5116 af5c0c9d18350ec6012e725a93e5b91a 493 Pfam PF13361 UvrD-like helicase C-terminal domain 375 467 3.2E-12 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_5116 af5c0c9d18350ec6012e725a93e5b91a 493 SUPERFAMILY SSF52540 2 471 7.49E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5116 af5c0c9d18350ec6012e725a93e5b91a 493 Pfam PF13245 AAA domain 10 231 1.4E-8 T 31-10-2018 Y89_5116 af5c0c9d18350ec6012e725a93e5b91a 493 Gene3D G3DSA:3.40.50.300 1 248 1.3E-22 T 31-10-2018 Y89_5116 af5c0c9d18350ec6012e725a93e5b91a 493 Gene3D G3DSA:3.40.50.300 252 484 4.5E-14 T 31-10-2018 Y89_3776 d431ce6517217220d3484175e39975a1 521 Gene3D G3DSA:3.30.450.20 6 136 5.1E-25 T 31-10-2018 Y89_3776 d431ce6517217220d3484175e39975a1 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 111 3.0E-12 T 31-10-2018 IPR000014 PAS domain Y89_3776 d431ce6517217220d3484175e39975a1 521 SUPERFAMILY SSF55785 21 114 3.32E-26 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3776 d431ce6517217220d3484175e39975a1 521 Gene3D G3DSA:1.10.287.950 230 521 7.2E-70 T 31-10-2018 Y89_3776 d431ce6517217220d3484175e39975a1 521 SMART SM00283 259 520 1.0E-80 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3776 d431ce6517217220d3484175e39975a1 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 318 487 6.0E-47 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3776 d431ce6517217220d3484175e39975a1 521 SUPERFAMILY SSF58104 241 521 2.62E-75 T 31-10-2018 Y89_3776 d431ce6517217220d3484175e39975a1 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 279 308 8.4E-22 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3776 d431ce6517217220d3484175e39975a1 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 8.4E-22 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3776 d431ce6517217220d3484175e39975a1 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 8.4E-22 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_3776 d431ce6517217220d3484175e39975a1 521 Pfam PF08447 PAS fold 31 113 2.0E-15 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_3883 dfe8f2191185e18b44ff649561c51b98 124 Gene3D G3DSA:3.40.50.2300 1 122 1.7E-38 T 31-10-2018 Y89_3883 dfe8f2191185e18b44ff649561c51b98 124 Pfam PF00072 Response regulator receiver domain 3 116 3.2E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3883 dfe8f2191185e18b44ff649561c51b98 124 SMART SM00448 1 115 4.9E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3883 dfe8f2191185e18b44ff649561c51b98 124 SUPERFAMILY SSF52172 1 121 5.41E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3520 951179b12eed382f1c4cf7dd92da0064 360 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 147 354 2.4E-36 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3520 951179b12eed382f1c4cf7dd92da0064 360 Gene3D G3DSA:1.10.3720.10 117 350 2.4E-16 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3520 951179b12eed382f1c4cf7dd92da0064 360 SUPERFAMILY SSF161098 123 339 6.28E-14 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2059 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 210 321 6.6E-8 T 31-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_2059 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 SUPERFAMILY SSF52540 5 203 4.0E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2059 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Gene3D G3DSA:3.40.50.300 2 162 1.3E-51 T 31-10-2018 Y89_2059 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 18 199 1.6E-65 T 31-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_2059 d2e4fce8ca03dcf6c36eb20bdfe72d5f 328 Pfam PF13177 DNA polymerase III, delta subunit 20 159 2.1E-45 T 31-10-2018 Y89_5321 1f6596508c701bc61e347f3c390335ab 354 Gene3D G3DSA:3.40.1570.10 17 294 1.3E-150 T 31-10-2018 Y89_5321 1f6596508c701bc61e347f3c390335ab 354 SUPERFAMILY SSF144064 14 351 2.94E-126 T 31-10-2018 Y89_5321 1f6596508c701bc61e347f3c390335ab 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 220 351 1.5E-42 T 31-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 Y89_5321 1f6596508c701bc61e347f3c390335ab 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 38 167 5.1E-42 T 31-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 Y89_5321 1f6596508c701bc61e347f3c390335ab 354 Gene3D G3DSA:3.40.1570.10 91 347 1.3E-150 T 31-10-2018 Y89_5046 d663ba3e9a0b779262cf64962d90b87e 209 Pfam PF08682 Putative endonuclease, protein of unknown function (DUF1780) 2 209 4.4E-131 T 31-10-2018 IPR014796 Protein of unknown function DUF1780, putative endonuclease Y89_5046 d663ba3e9a0b779262cf64962d90b87e 209 Gene3D G3DSA:3.40.1540.10 1 209 1.8E-85 T 31-10-2018 IPR037074 Protein of unknown function DUF1780, putative endonuclease superfamily Y89_5046 d663ba3e9a0b779262cf64962d90b87e 209 SUPERFAMILY SSF52980 1 209 2.57E-126 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 Gene3D G3DSA:3.90.228.20 207 501 6.9E-203 T 31-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 Pfam PF01293 Phosphoenolpyruvate carboxykinase 7 467 3.2E-188 T 31-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 Gene3D G3DSA:2.170.8.10 27 321 6.9E-203 T 31-10-2018 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 SUPERFAMILY SSF68923 5 199 9.42E-69 T 31-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 SUPERFAMILY SSF53795 200 513 5.72E-127 T 31-10-2018 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 1 513 52.372 T 31-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 237 252 - T 31-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 513 3.5E-183 T 31-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 PIRSF PIRSF006294 1 513 5.0E-207 T 31-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Y89_5879 55bcc9364615a7e7c92c74a3da160937 513 Gene3D G3DSA:3.40.449.10 9 206 6.9E-203 T 31-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Y89_3536 ae52524c6292f844aebd870057fb6361 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 3.6E-67 T 31-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 Gene3D G3DSA:3.40.50.10860 8 276 9.5E-107 T 31-10-2018 Y89_3536 ae52524c6292f844aebd870057fb6361 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 8.0E-40 T 31-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 Gene3D G3DSA:3.40.50.720 6 259 9.5E-107 T 31-10-2018 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 7.5E-84 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 SUPERFAMILY SSF53223 1 122 4.7E-41 T 31-10-2018 Y89_3536 ae52524c6292f844aebd870057fb6361 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.159 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 31-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Y89_3536 ae52524c6292f844aebd870057fb6361 284 SUPERFAMILY SSF51735 123 283 7.77E-51 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 SUPERFAMILY SSF51215 24 135 1.28E-21 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 SUPERFAMILY SSF46689 170 217 4.84E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 SUPERFAMILY SSF46689 219 266 2.64E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 Pfam PF12833 Helix-turn-helix domain 189 266 1.9E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 Gene3D G3DSA:1.10.10.60 168 269 6.7E-25 T 31-10-2018 Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 Pfam PF02311 AraC-like ligand binding domain 18 146 1.5E-27 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_2712 385cb5f67a14e5df54e2989d18c3af0e 271 SMART SM00342 183 265 2.7E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 SUPERFAMILY SSF56219 4 258 4.19E-79 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 251 6.3E-21 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 Gene3D G3DSA:3.60.10.10 4 259 1.6E-72 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 4 257 2.8E-70 T 31-10-2018 Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 258 5.6E-70 T 31-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y89_0850 280daa8a23348cbc3cb51a7832b264ec 266 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 30 39 - T 31-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 SMART SM01217 684 753 1.8E-30 T 31-10-2018 IPR026891 Fibronectin type III-like domain Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 SUPERFAMILY SSF52279 394 650 5.23E-60 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 SUPERFAMILY SSF51445 32 392 2.32E-98 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 272 289 - T 31-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:2.60.40.10 650 763 1.1E-32 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:3.20.20.300 29 368 2.6E-114 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 119 138 2.9E-22 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 202 218 2.9E-22 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 165 181 2.9E-22 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 272 290 2.9E-22 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 PRINTS PR00133 Glycosyl hydrolase family 3 signature 100 116 2.9E-22 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 49 349 1.0E-82 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Gene3D G3DSA:3.40.50.1700 380 649 5.2E-97 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF14310 Fibronectin type III-like domain 685 753 7.2E-22 T 31-10-2018 IPR026891 Fibronectin type III-like domain Y89_3607 dfbe14d4b37492fe7d97e0643b6ceb05 764 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 394 647 8.1E-61 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 Gene3D G3DSA:2.20.200.10 110 363 6.4E-113 T 31-10-2018 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 Gene3D G3DSA:1.20.1600.10 63 475 6.4E-113 T 31-10-2018 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 474 8.1E-126 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 Pfam PF02321 Outer membrane efflux protein 73 263 6.2E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 Pfam PF02321 Outer membrane efflux protein 296 472 1.3E-18 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5832 7a3145defaa101429eed0f7d9ed150dc 492 SUPERFAMILY SSF56954 9 478 3.01E-97 T 31-10-2018 Y89_0334 23619acac30924bc9894e12129a2fdb8 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 248 2.7E-60 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0334 23619acac30924bc9894e12129a2fdb8 256 SUPERFAMILY SSF53850 2 250 2.8E-64 T 31-10-2018 Y89_0334 23619acac30924bc9894e12129a2fdb8 256 SMART SM00062 31 250 4.6E-64 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0334 23619acac30924bc9894e12129a2fdb8 256 Gene3D G3DSA:3.40.190.10 114 212 1.4E-62 T 31-10-2018 Y89_0334 23619acac30924bc9894e12129a2fdb8 256 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_0334 23619acac30924bc9894e12129a2fdb8 256 Gene3D G3DSA:3.40.190.10 29 247 1.4E-62 T 31-10-2018 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Gene3D G3DSA:2.40.340.10 331 393 1.6E-124 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 SMART SM00852 185 321 1.8E-40 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 SUPERFAMILY SSF53218 182 325 3.66E-41 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Pfam PF00994 Probable molybdopterin binding domain 186 319 2.0E-27 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Gene3D G3DSA:2.170.190.11 56 146 1.6E-124 T 31-10-2018 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Pfam PF03453 MoeA N-terminal region (domain I and II) 12 172 1.1E-42 T 31-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Gene3D G3DSA:3.40.980.10 180 330 1.6E-124 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Pfam PF03454 MoeA C-terminal region (domain IV) 335 400 4.6E-15 T 31-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 181 317 1.2E-31 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 SUPERFAMILY SSF63867 330 402 1.44E-15 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 257 290 - T 31-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 Gene3D G3DSA:3.90.105.10 33 179 1.6E-124 T 31-10-2018 Y89_1991 b1a21e63b2086c1db553d318bb443e64 405 SUPERFAMILY SSF63882 8 181 3.66E-53 T 31-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 PIRSF PIRSF000116 2 203 5.2E-45 T 31-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 PIRSF PIRSF000116 201 332 8.4E-15 T 31-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.862 T 31-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 3.4E-75 T 31-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 SUPERFAMILY SSF48179 183 332 1.55E-69 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Gene3D G3DSA:3.40.50.720 1 182 1.9E-78 T 31-10-2018 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 SUPERFAMILY SSF51735 1 182 6.95E-75 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Gene3D G3DSA:1.10.3730.40 183 338 2.7E-75 T 31-10-2018 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 2.3E-130 T 31-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_5306 2afdc47e3ac5616a06a5e098e3a4b0d2 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 4.3E-63 T 31-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 Gene3D G3DSA:3.30.413.10 264 363 5.0E-26 T 31-10-2018 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 SUPERFAMILY SSF51717 17 209 1.49E-10 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 SUPERFAMILY SSF56014 267 354 3.6E-12 T 31-10-2018 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 11 353 5.4E-133 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 9 361 35.441 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 Gene3D G3DSA:3.20.20.20 1 263 2.3E-108 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 Pfam PF04551 GcpE protein 15 354 7.9E-137 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y89_1223 2e6271363a20a44eb1afc805b069640c 371 PIRSF PIRSF004640 3 364 9.7E-151 T 31-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Y89_0542 43b4e65ccafdcab412e87dd355ec92f5 190 Pfam PF00510 Cytochrome c oxidase subunit III 16 188 2.6E-18 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0542 43b4e65ccafdcab412e87dd355ec92f5 190 SUPERFAMILY SSF81452 5 189 3.01E-49 T 31-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0542 43b4e65ccafdcab412e87dd355ec92f5 190 Gene3D G3DSA:1.20.120.80 10 190 1.3E-47 T 31-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 8 170 9.3E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 Pfam PF13419 Haloacid dehalogenase-like hydrolase 42 170 2.5E-17 T 31-10-2018 Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 10 164 2.9E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 SUPERFAMILY SSF56784 5 195 2.04E-38 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 Gene3D G3DSA:3.40.50.1000 7 186 5.5E-68 T 31-10-2018 IPR023214 HAD superfamily Y89_1082 b4e3cdf7dcb74bc003ad80259969a060 198 Gene3D G3DSA:1.10.260.80 19 69 5.5E-68 T 31-10-2018 Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 Gene3D G3DSA:1.10.10.10 13 88 6.4E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 SUPERFAMILY SSF55781 82 261 1.96E-38 T 31-10-2018 Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 SUPERFAMILY SSF46785 16 90 1.47E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 Gene3D G3DSA:3.30.450.40 89 264 8.9E-36 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 Pfam PF09339 IclR helix-turn-helix domain 18 68 2.4E-13 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 SMART SM00346 16 106 1.6E-20 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_3313 330ccc3ea9705cc63a0a8efece795375 267 Pfam PF01614 Bacterial transcriptional regulator 134 257 4.2E-16 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 SUPERFAMILY SSF52821 2 156 3.14E-39 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 Pfam PF00581 Rhodanese-like domain 163 273 1.3E-10 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 Pfam PF00581 Rhodanese-like domain 8 132 8.2E-16 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 Gene3D G3DSA:3.40.250.10 161 283 6.2E-33 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 SMART SM00450 7 135 2.5E-17 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 SMART SM00450 158 278 5.2E-11 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 SUPERFAMILY SSF52821 163 283 1.44E-31 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4058 c56b64c4067be1b250e6c58e36655d30 284 Gene3D G3DSA:3.40.250.10 1 151 1.3E-43 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_6274 29696ffb030adbec2e48aa90b892e885 213 Pfam PF08856 Protein of unknown function (DUF1826) 17 210 5.2E-65 T 31-10-2018 IPR014955 Protein of unknown function DUF1826 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 SMART SM00387 33 177 2.5E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.10.20.690 594 685 1.6E-19 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 72 85 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 489 505 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 527 539 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 115 129 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 270 283 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 738 754 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 422 436 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 37 52 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR00418 DNA topoisomerase II family signature 507 524 9.7E-72 T 31-10-2018 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 4 806 101.231 T 31-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 175 1.6E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 SMART SM00433 37 799 7.5E-272 T 31-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF56719 396 796 2.59E-88 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF54211 222 394 2.85E-57 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF00204 DNA gyrase B 222 392 6.5E-57 T 31-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.40.50.670 398 586 2.4E-74 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 SUPERFAMILY SSF55874 7 219 5.24E-75 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 314 330 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 221 243 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 362 376 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 759 771 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 775 791 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 244 262 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 376 396 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 PRINTS PR01159 DNA gyrase subunit B signature 472 481 1.8E-83 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 ProSitePatterns PS00177 DNA topoisomerase II signature. 424 432 - T 31-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF01751 Toprim domain 421 533 1.1E-17 T 31-10-2018 IPR006171 TOPRIM domain Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.30.565.10 3 220 2.6E-92 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 7 806 6.3E-303 T 31-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 795 2.8E-30 T 31-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.30.230.10 221 397 1.6E-68 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_0004 198f6ef710d4f6a9fa96d428c423bf4c 806 Gene3D G3DSA:3.40.50.670 706 805 2.7E-26 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_1893 bcf5bb6b7b5d8d3e70c8b696b6733364 149 Gene3D G3DSA:2.60.40.790 35 140 1.3E-21 T 31-10-2018 IPR008978 HSP20-like chaperone Y89_1893 bcf5bb6b7b5d8d3e70c8b696b6733364 149 Pfam PF00011 Hsp20/alpha crystallin family 44 140 3.3E-17 T 31-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Y89_1893 bcf5bb6b7b5d8d3e70c8b696b6733364 149 SUPERFAMILY SSF49764 11 141 2.51E-21 T 31-10-2018 IPR008978 HSP20-like chaperone Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 337 1.7E-148 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 Gene3D G3DSA:2.40.10.240 64 159 9.7E-117 T 31-10-2018 Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 Gene3D G3DSA:3.40.1780.10 14 336 9.7E-117 T 31-10-2018 Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 337 47.897 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 Pfam PF02547 Queuosine biosynthesis protein 4 336 1.5E-134 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y89_1202 30cf358b51d182846fe6968e7f63b91b 347 SUPERFAMILY SSF111337 1 336 2.09E-137 T 31-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.6E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 SUPERFAMILY SSF51735 5 245 6.59E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 Pfam PF00106 short chain dehydrogenase 5 188 3.7E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 Gene3D G3DSA:3.40.50.720 4 277 8.0E-78 T 31-10-2018 Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 7.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 7.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3970 d606e0414f42ccbf2cfa029353eb62af 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 7.8E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 PRINTS PR00355 Adrenodoxin signature 59 73 9.5E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 PRINTS PR00355 Adrenodoxin signature 82 90 9.5E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 PRINTS PR00355 Adrenodoxin signature 40 50 9.5E-10 T 31-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 90 1.6E-12 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 SUPERFAMILY SSF54292 3 102 8.73E-32 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 Gene3D G3DSA:3.10.20.30 1 106 1.4E-35 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2568 3d99ca047f2b211e713dc1432810c35a 106 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 31-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Y89_4142 91085a0df740caad047682df873f8064 211 Gene3D G3DSA:3.40.50.1820 11 210 6.6E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4142 91085a0df740caad047682df873f8064 211 SUPERFAMILY SSF53474 36 207 1.8E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4142 91085a0df740caad047682df873f8064 211 Pfam PF12697 Alpha/beta hydrolase family 24 203 7.2E-8 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5274 13222162bc72de08d2f6918c76679410 252 SUPERFAMILY SSF69572 2 247 7.19E-83 T 31-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Y89_5274 13222162bc72de08d2f6918c76679410 252 Gene3D G3DSA:3.40.50.720 2 250 1.3E-88 T 31-10-2018 Y89_5274 13222162bc72de08d2f6918c76679410 252 Pfam PF00899 ThiF family 10 243 1.2E-59 T 31-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y89_0016 50136cd981925718dc7d6c0bb519cc49 183 Pfam PF03352 Methyladenine glycosylase 6 177 1.1E-70 T 31-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Y89_0016 50136cd981925718dc7d6c0bb519cc49 183 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 3 178 2.0E-88 T 31-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 Y89_0016 50136cd981925718dc7d6c0bb519cc49 183 Gene3D G3DSA:1.10.340.30 1 181 1.5E-75 T 31-10-2018 Y89_0016 50136cd981925718dc7d6c0bb519cc49 183 SUPERFAMILY SSF48150 1 181 2.2E-75 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y89_2386 8c73713858736784c47ce46319ad6a82 529 SUPERFAMILY SSF103473 15 399 4.58E-50 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2386 8c73713858736784c47ce46319ad6a82 529 Gene3D G3DSA:1.20.1250.20 10 399 4.0E-39 T 31-10-2018 Y89_2386 8c73713858736784c47ce46319ad6a82 529 Pfam PF05977 Transmembrane secretion effector 6 523 8.9E-221 T 31-10-2018 IPR010290 Transmembrane secretion effector Y89_5608 f5f59be034a97d07464a676700439a9b 430 Pfam PF00709 Adenylosuccinate synthetase 5 423 6.4E-179 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_5608 f5f59be034a97d07464a676700439a9b 430 SMART SM00788 4 424 5.3E-301 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_5608 f5f59be034a97d07464a676700439a9b 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 6.5E-185 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_5608 f5f59be034a97d07464a676700439a9b 430 SUPERFAMILY SSF52540 3 429 6.59E-177 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5608 f5f59be034a97d07464a676700439a9b 430 Gene3D G3DSA:3.40.440.10 6 249 4.6E-104 T 31-10-2018 Y89_5608 f5f59be034a97d07464a676700439a9b 430 Gene3D G3DSA:1.10.300.10 102 201 4.6E-104 T 31-10-2018 Y89_5608 f5f59be034a97d07464a676700439a9b 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 31-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_5608 f5f59be034a97d07464a676700439a9b 430 Gene3D G3DSA:3.90.170.10 267 430 8.1E-67 T 31-10-2018 Y89_5608 f5f59be034a97d07464a676700439a9b 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 218.942 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_5608 f5f59be034a97d07464a676700439a9b 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 31-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Y89_3521 4835d815d401462563788a968ae9118f 339 Gene3D G3DSA:1.10.3720.10 130 334 2.2E-19 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3521 4835d815d401462563788a968ae9118f 339 SUPERFAMILY SSF161098 136 322 4.32E-20 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3521 4835d815d401462563788a968ae9118f 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 9.0E-28 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3521 4835d815d401462563788a968ae9118f 339 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 8 45 6.1E-6 T 31-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Y89_1402 acae582e0df1fa97691a3e050747853e 222 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 13 222 39.398 T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y89_1402 acae582e0df1fa97691a3e050747853e 222 Gene3D G3DSA:3.40.50.150 6 220 5.5E-77 T 31-10-2018 Y89_1402 acae582e0df1fa97691a3e050747853e 222 SUPERFAMILY SSF53335 14 218 3.31E-43 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1402 acae582e0df1fa97691a3e050747853e 222 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 13 218 1.3E-69 T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y89_1402 acae582e0df1fa97691a3e050747853e 222 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 143 158 - T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Y89_1402 acae582e0df1fa97691a3e050747853e 222 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 18 217 3.0E-65 T 31-10-2018 Y89_0376 8b65296bd7dd5cad772b95fa0213e665 179 SUPERFAMILY SSF52317 8 178 2.69E-43 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0376 8b65296bd7dd5cad772b95fa0213e665 179 Pfam PF01965 DJ-1/PfpI family 10 175 4.3E-45 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_0376 8b65296bd7dd5cad772b95fa0213e665 179 Gene3D G3DSA:3.40.50.880 1 179 5.0E-50 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0376 8b65296bd7dd5cad772b95fa0213e665 179 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 177 3.2E-44 T 31-10-2018 IPR006286 Deglycase PfpI Y89_6030 1d52b8cac93dd02d2d10a900475cd6b9 349 Gene3D G3DSA:3.40.50.1000 25 348 3.2E-171 T 31-10-2018 IPR023214 HAD superfamily Y89_6030 1d52b8cac93dd02d2d10a900475cd6b9 349 Gene3D G3DSA:1.20.1440.310 61 163 3.2E-171 T 31-10-2018 Y89_6030 1d52b8cac93dd02d2d10a900475cd6b9 349 SUPERFAMILY SSF56784 27 221 8.91E-12 T 31-10-2018 IPR036412 HAD-like superfamily Y89_0206 7cb44fee851f869a85c4e4d17e2a8987 299 Gene3D G3DSA:3.60.130.10 8 299 1.1E-74 T 31-10-2018 Y89_0206 7cb44fee851f869a85c4e4d17e2a8987 299 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 20 291 3.2E-55 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_0206 7cb44fee851f869a85c4e4d17e2a8987 299 SUPERFAMILY SSF51197 19 293 2.34E-70 T 31-10-2018 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 723 0.0 T 31-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 SUPERFAMILY SSF51645 2 723 0.0 T 31-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 Gene3D G3DSA:1.20.1220.12 584 725 7.0E-76 T 31-10-2018 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 Pfam PF01274 Malate synthase 18 697 3.1E-177 T 31-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 Gene3D G3DSA:2.170.170.11 135 264 6.3E-288 T 31-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 Gene3D G3DSA:3.20.20.360 7 580 6.3E-288 T 31-10-2018 Y89_0504 a3134ffad466d7d0c9709090333e016c 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 426.011 T 31-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Y89_4819 eb655c848ae89fe936466ce157342404 439 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 25 438 39.758 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 32 406 1.0E-106 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 382 401 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 350 367 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 166 187 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 113 139 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 218 241 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 141 160 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 PRINTS PR00447 Natural resistance-associated macrophage protein signature 322 341 2.1E-57 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4819 eb655c848ae89fe936466ce157342404 439 Pfam PF01566 Natural resistance-associated macrophage protein 54 411 1.2E-131 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 Gene3D G3DSA:2.40.110.10 128 239 2.1E-35 T 31-10-2018 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 Gene3D G3DSA:1.20.140.10 240 382 3.1E-8 T 31-10-2018 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 SUPERFAMILY SSF56645 12 246 1.7E-66 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 Gene3D G3DSA:1.10.540.10 5 126 2.3E-28 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 131 143 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 125 1.2E-24 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2594 3c3bc13038d6be943a5e43821789e9fa 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 224 1.3E-22 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_6272 843fbbdf11f9ca8bb952753da2c56dfb 322 SMART SM00833 235 318 1.3E-6 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_6272 843fbbdf11f9ca8bb952753da2c56dfb 322 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 318 4.6E-8 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Y89_6272 843fbbdf11f9ca8bb952753da2c56dfb 322 SUPERFAMILY SSF52540 4 165 2.15E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6272 843fbbdf11f9ca8bb952753da2c56dfb 322 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 168 2.0E-38 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Y89_6272 843fbbdf11f9ca8bb952753da2c56dfb 322 Gene3D G3DSA:3.40.50.300 2 191 1.8E-35 T 31-10-2018 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 Gene3D G3DSA:3.40.50.2300 1 120 1.0E-37 T 31-10-2018 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 Pfam PF00072 Response regulator receiver domain 3 112 5.7E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 SMART SM00862 145 218 9.4E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 Gene3D G3DSA:1.10.10.10 124 223 1.6E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 2.2E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 SMART SM00448 1 112 2.1E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4603 33d9d0d58a907a3a3221d72d74fddd75 223 SUPERFAMILY SSF52172 1 173 9.68E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.2E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.2E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.2E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 4.5E-28 T 31-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 PIRSF PIRSF004669 1 89 5.1E-29 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_5033 0972598b8147dea0ffafa6203723e0bf 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 6.7E-28 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_4090 931a3393030fdfa1119ee512e06945de 265 Gene3D G3DSA:1.10.10.60 159 264 4.8E-30 T 31-10-2018 Y89_4090 931a3393030fdfa1119ee512e06945de 265 Pfam PF08448 PAS fold 40 147 1.5E-18 T 31-10-2018 IPR013656 PAS fold-4 Y89_4090 931a3393030fdfa1119ee512e06945de 265 SUPERFAMILY SSF46689 214 260 1.25E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4090 931a3393030fdfa1119ee512e06945de 265 SUPERFAMILY SSF55785 27 146 1.74E-13 T 31-10-2018 IPR035965 PAS domain superfamily Y89_4090 931a3393030fdfa1119ee512e06945de 265 Gene3D G3DSA:3.30.450.20 23 153 4.0E-19 T 31-10-2018 Y89_4090 931a3393030fdfa1119ee512e06945de 265 SMART SM00342 174 256 8.0E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4090 931a3393030fdfa1119ee512e06945de 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 1.6E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4090 931a3393030fdfa1119ee512e06945de 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 1.6E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4090 931a3393030fdfa1119ee512e06945de 265 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 211 252 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4090 931a3393030fdfa1119ee512e06945de 265 Pfam PF12833 Helix-turn-helix domain 181 257 1.7E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4090 931a3393030fdfa1119ee512e06945de 265 SUPERFAMILY SSF46689 158 207 8.78E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 136 151 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 151 167 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 PRINTS PR01021 OMPA domain signature 105 127 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 Gene3D G3DSA:3.30.1330.60 90 210 8.2E-40 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 SUPERFAMILY SSF103088 78 207 1.44E-35 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4314 8347a15af8bb9bcc94ca00029d781475 210 Pfam PF00691 OmpA family 105 201 5.2E-24 T 31-10-2018 IPR006665 OmpA-like domain Y89_5704 7c8619ee65702a1a583b20b3c053158d 357 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 206 9.2E-37 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_5704 7c8619ee65702a1a583b20b3c053158d 357 Gene3D G3DSA:1.10.10.60 231 336 3.5E-24 T 31-10-2018 Y89_5704 7c8619ee65702a1a583b20b3c053158d 357 SUPERFAMILY SSF46689 287 336 4.48E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5704 7c8619ee65702a1a583b20b3c053158d 357 Pfam PF12833 Helix-turn-helix domain 257 335 1.7E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_5704 7c8619ee65702a1a583b20b3c053158d 357 SMART SM00342 251 333 1.8E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_5691 d5e3c55cb67a5c9d14932388998bec24 278 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 276 6.3E-112 T 31-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Y89_5691 d5e3c55cb67a5c9d14932388998bec24 278 Gene3D G3DSA:3.40.50.150 1 278 8.8E-105 T 31-10-2018 Y89_5691 d5e3c55cb67a5c9d14932388998bec24 278 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 265 39.858 T 31-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Y89_5691 d5e3c55cb67a5c9d14932388998bec24 278 SUPERFAMILY SSF53335 8 274 1.33E-89 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 Gene3D G3DSA:3.90.1150.10 260 394 1.2E-59 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 PIRSF PIRSF001434 1 394 1.1E-147 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 Gene3D G3DSA:3.40.640.10 13 259 1.6E-93 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 SUPERFAMILY SSF53383 17 393 5.32E-121 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0423 0e05171ed5d3c56225f908cc886d5be3 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 17 391 5.9E-153 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Y89_1732 f2155a42efe28ba921b6de03b95d6fe2 438 SUPERFAMILY SSF56935 49 438 1.28E-27 T 31-10-2018 Y89_1732 f2155a42efe28ba921b6de03b95d6fe2 438 Gene3D G3DSA:2.40.160.10 13 438 6.0E-175 T 31-10-2018 IPR023614 Porin domain superfamily Y89_1732 f2155a42efe28ba921b6de03b95d6fe2 438 Pfam PF07396 Phosphate-selective porin O and P 53 438 7.5E-108 T 31-10-2018 IPR010870 Phosphate-selective porin O/P Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 SMART SM00646 239 397 1.8E-71 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Gene3D G3DSA:3.10.350.10 415 473 6.9E-14 T 31-10-2018 IPR036779 LysM domain superfamily Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Gene3D G3DSA:2.60.40.3500 23 136 3.6E-30 T 31-10-2018 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 SUPERFAMILY SSF54106 425 468 4.32E-10 T 31-10-2018 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 SMART SM00257 425 468 5.7E-12 T 31-10-2018 IPR018392 LysM domain Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF01476 LysM domain 426 468 1.8E-11 T 31-10-2018 IPR018392 LysM domain Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 179 397 1.9E-46 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 SUPERFAMILY SSF53187 177 401 1.26E-54 T 31-10-2018 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Gene3D G3DSA:3.40.630.40 168 405 1.1E-76 T 31-10-2018 Y89_5617 72247f45e10ac31053a5edb8fbb09133 475 Pfam PF11741 AMIN domain 34 133 7.0E-23 T 31-10-2018 IPR021731 AMIN domain Y89_4218 5c055f1ca2c8b8153bfe8eba3b0b416f 137 Pfam PF04134 Protein of unknown function, DUF393 14 122 1.3E-20 T 31-10-2018 IPR007263 Protein of unknown function DUF393 Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 SUPERFAMILY SSF51604 127 388 4.06E-69 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 Pfam PF13378 Enolase C-terminal domain-like 163 382 1.7E-55 T 31-10-2018 IPR029065 Enolase C-terminal domain-like Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 SMART SM00922 159 262 1.8E-22 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 SUPERFAMILY SSF54826 1 143 1.13E-33 T 31-10-2018 Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 Gene3D G3DSA:3.30.390.10 3 136 1.1E-190 T 31-10-2018 IPR029017 Enolase-like, N-terminal Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 Gene3D G3DSA:3.20.20.120 137 385 1.1E-190 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Y89_3064 9889ffde2a6515fcf5d4ead9700f9f2c 391 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 139 1.3E-20 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 Gene3D G3DSA:1.20.58.100 425 536 4.8E-41 T 31-10-2018 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF56425 238 353 8.07E-44 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 6 520 2.6E-201 T 31-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 Pfam PF00890 FAD binding domain 8 392 3.8E-107 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF51905 3 448 1.3E-72 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 521 3.8E-13 T 31-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 PIRSF PIRSF000171 338 533 4.4E-11 T 31-10-2018 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 PIRSF PIRSF000171 1 323 1.5E-22 T 31-10-2018 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 Gene3D G3DSA:3.90.700.10 248 358 3.4E-155 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 SUPERFAMILY SSF46977 425 529 1.57E-31 T 31-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 Gene3D G3DSA:3.50.50.60 8 403 3.4E-155 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 5.3E-9 T 31-10-2018 Y89_4597 2c92fd1bbade562d3c9f969a0f55f195 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.3E-9 T 31-10-2018 Y89_3744 f8258efbed6c488d0a4e95a5313d0f9c 254 Pfam PF04654 Protein of unknown function, DUF599 18 228 9.7E-62 T 31-10-2018 IPR006747 Protein of unknown function DUF599 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 11 127 31.184 T 31-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 Gene3D G3DSA:3.30.160.750 73 129 5.0E-20 T 31-10-2018 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 13 123 4.0E-45 T 31-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 SUPERFAMILY SSF56276 13 124 3.26E-38 T 31-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 Pfam PF02675 S-adenosylmethionine decarboxylase 18 123 2.9E-34 T 31-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Y89_5385 64d0785a7c80488b736c0952be6a73d2 160 Gene3D G3DSA:3.30.360.110 11 72 6.6E-24 T 31-10-2018 Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 Hamap MF_01220_B Uridylate kinase [pyrH]. 10 243 44.024 T 31-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 Gene3D G3DSA:3.40.1160.10 2 244 4.3E-74 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 12 243 8.9E-99 T 31-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 Pfam PF00696 Amino acid kinase family 13 222 1.0E-26 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 PIRSF PIRSF005650 7 245 7.3E-89 T 31-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Y89_1372 cbfb8b68f9452577f28cbbc4968e9e3f 245 SUPERFAMILY SSF53633 10 242 7.99E-73 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_4439 34d394c6e9dd3ef9740ed747db993371 881 SUPERFAMILY SSF55729 676 851 1.25E-15 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4439 34d394c6e9dd3ef9740ed747db993371 881 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 566 853 1.9E-92 T 31-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Y89_4439 34d394c6e9dd3ef9740ed747db993371 881 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 42 329 6.7E-16 T 31-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y89_3333 52c4accc4c8401dd4f71f9ceefdac27a 608 SUPERFAMILY SSF53474 350 602 1.23E-58 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3333 52c4accc4c8401dd4f71f9ceefdac27a 608 Gene3D G3DSA:3.40.50.1820 341 606 1.6E-68 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3333 52c4accc4c8401dd4f71f9ceefdac27a 608 SUPERFAMILY SSF82171 68 294 7.65E-6 T 31-10-2018 Y89_3333 52c4accc4c8401dd4f71f9ceefdac27a 608 Pfam PF00326 Prolyl oligopeptidase family 399 605 2.3E-35 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 SUPERFAMILY SSF46894 136 233 5.39E-22 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 SMART SM00862 156 232 1.3E-15 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 SMART SM00448 6 119 1.5E-43 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 SUPERFAMILY SSF52172 4 129 1.99E-42 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 Gene3D G3DSA:3.40.50.2300 2 132 1.6E-38 T 31-10-2018 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 Gene3D G3DSA:1.10.10.10 133 237 4.1E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1824 eb4aaa960397cf4ef27582c3eb7f9a31 242 Pfam PF00072 Response regulator receiver domain 8 120 5.5E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 SUPERFAMILY SSF49584 122 208 7.06E-12 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 Gene3D G3DSA:2.60.40.10 11 121 3.0E-21 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 144 204 5.3E-10 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 SUPERFAMILY SSF49354 14 119 5.76E-22 T 31-10-2018 IPR008962 PapD-like superfamily Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 Gene3D G3DSA:2.60.40.10 123 219 5.2E-11 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 22 119 2.3E-20 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 PRINTS PR00969 Pili chaperone signature 52 73 7.0E-18 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 PRINTS PR00969 Pili chaperone signature 103 118 7.0E-18 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 PRINTS PR00969 Pili chaperone signature 138 153 7.0E-18 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0520 f300a3923f88d57ac8ba82bf9e9efa86 222 PRINTS PR00969 Pili chaperone signature 80 97 7.0E-18 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_1420 3cb1010ecd3ce2fc7cddab71a1db8a8b 238 Pfam PF03942 DTW domain 28 214 2.5E-42 T 31-10-2018 IPR005636 DTW Y89_1420 3cb1010ecd3ce2fc7cddab71a1db8a8b 238 SMART SM01144 26 219 3.9E-74 T 31-10-2018 IPR005636 DTW Y89_2497 9e420925a057c6cd914c13a380a44a76 268 SUPERFAMILY SSF46894 189 257 2.01E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 SMART SM00421 199 256 2.7E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 ProSitePatterns PS00622 LuxR-type HTH domain signature. 216 243 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 2.0E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 2.0E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 2.0E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_2497 9e420925a057c6cd914c13a380a44a76 268 Gene3D G3DSA:1.10.10.10 157 263 3.6E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2497 9e420925a057c6cd914c13a380a44a76 268 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 253 7.7E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 SUPERFAMILY SSF63411 62 267 7.0E-42 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 Gene3D G3DSA:3.30.830.10 280 477 6.8E-56 T 31-10-2018 Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 Pfam PF00675 Insulinase (Peptidase family M16) 80 206 3.7E-5 T 31-10-2018 IPR011765 Peptidase M16, N-terminal Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 Pfam PF05193 Peptidase M16 inactive domain 230 405 8.8E-31 T 31-10-2018 IPR007863 Peptidase M16, C-terminal Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 Gene3D G3DSA:3.30.830.10 66 277 3.0E-48 T 31-10-2018 Y89_0393 d1b0b20db60c040f155cfea547bed9b3 495 SUPERFAMILY SSF63411 290 473 5.67E-44 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.1E-47 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 SUPERFAMILY SSF53901 1 251 2.79E-63 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 SUPERFAMILY SSF53901 213 403 2.72E-60 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 359 2.0E-29 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 Gene3D G3DSA:3.40.47.10 258 403 1.4E-47 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 SMART SM00825 Beta-ketoacyl synthase 4 405 4.7E-13 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y89_3726 23c9e74eef828dca01a5eda3dbb07049 405 Gene3D G3DSA:3.40.47.10 1 252 2.7E-63 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 7.5E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 Gene3D G3DSA:1.10.357.10 52 176 5.9E-22 T 31-10-2018 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 Gene3D G3DSA:1.10.10.60 5 51 6.8E-13 T 31-10-2018 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 3.8E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 3.8E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 SUPERFAMILY SSF46689 1 71 2.31E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2266 c0060837d1537e54bec55cd833a15b27 193 SUPERFAMILY SSF48498 76 174 2.36E-23 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_4705 f89b500e86e754242b89b029bec2b431 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 3.2E-26 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4705 f89b500e86e754242b89b029bec2b431 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 3.2E-26 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4705 f89b500e86e754242b89b029bec2b431 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 3.2E-26 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4705 f89b500e86e754242b89b029bec2b431 136 SUPERFAMILY SSF46955 8 115 2.86E-27 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_4705 f89b500e86e754242b89b029bec2b431 136 SMART SM00422 8 77 1.6E-28 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4705 f89b500e86e754242b89b029bec2b431 136 Gene3D G3DSA:1.10.1660.10 1 127 3.4E-30 T 31-10-2018 Y89_4705 f89b500e86e754242b89b029bec2b431 136 Pfam PF00376 MerR family regulatory protein 9 46 4.5E-10 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4705 f89b500e86e754242b89b029bec2b431 136 Pfam PF09278 MerR, DNA binding 51 108 2.0E-17 T 31-10-2018 IPR015358 Transcription regulator MerR, DNA binding Y89_4705 f89b500e86e754242b89b029bec2b431 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 3.2E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 3.2E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.2E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 SUPERFAMILY SSF51735 4 236 1.16E-58 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 Gene3D G3DSA:3.40.50.720 2 255 4.7E-61 T 31-10-2018 Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.5E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.5E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.5E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.5E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.5E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1143 516b21fe7c7a33d9fe55a28493a7afb6 276 Pfam PF00106 short chain dehydrogenase 5 188 4.6E-45 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4912 d3f7ae8200417fa86b6a2d7addcb159b 604 Gene3D G3DSA:1.25.40.650 147 250 3.5E-17 T 31-10-2018 Y89_4912 d3f7ae8200417fa86b6a2d7addcb159b 604 SUPERFAMILY SSF53822 251 599 2.75E-82 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_4912 d3f7ae8200417fa86b6a2d7addcb159b 604 Pfam PF04348 LppC putative lipoprotein 33 594 8.6E-222 T 31-10-2018 IPR007443 Penicillin-binding protein activator LpoA Y89_4912 d3f7ae8200417fa86b6a2d7addcb159b 604 Gene3D G3DSA:3.40.50.2300 254 587 1.8E-90 T 31-10-2018 Y89_4912 d3f7ae8200417fa86b6a2d7addcb159b 604 Gene3D G3DSA:3.40.50.2300 360 588 1.8E-90 T 31-10-2018 Y89_0273 4c0599888d2d52609cb21004850904f3 965 SUPERFAMILY SSF57783 23 105 5.27E-11 T 31-10-2018 Y89_0273 4c0599888d2d52609cb21004850904f3 965 Pfam PF06048 Domain of unknown function (DUF927) 386 665 3.7E-96 T 31-10-2018 IPR009270 Domain of unknown function DUF927 Y89_0273 4c0599888d2d52609cb21004850904f3 965 Gene3D G3DSA:3.90.580.10 15 108 1.9E-6 T 31-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Y89_4722 fdb267e3512d30a99bd5c823b262628b 168 SUPERFAMILY SSF55729 1 148 1.72E-27 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4722 fdb267e3512d30a99bd5c823b262628b 168 Pfam PF13527 Acetyltransferase (GNAT) domain 5 129 9.8E-11 T 31-10-2018 Y89_4722 fdb267e3512d30a99bd5c823b262628b 168 Gene3D G3DSA:3.40.630.30 1 166 6.3E-48 T 31-10-2018 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Gene3D G3DSA:2.40.110.10 162 282 1.8E-93 T 31-10-2018 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 SUPERFAMILY SSF56645 38 281 2.62E-56 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Gene3D G3DSA:1.10.540.10 46 161 1.8E-93 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 SUPERFAMILY SSF47203 289 459 2.09E-47 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 587 5.1E-35 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.2E-17 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 158 4.2E-11 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 33 3.7E-11 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Gene3D G3DSA:1.20.140.10 283 450 1.8E-93 T 31-10-2018 Y89_0823 bbb223a44a1d0fb7ab1ba5cb70b6083d 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 3.0E-21 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 SUPERFAMILY SSF52317 5 190 1.67E-46 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 SUPERFAMILY SSF46689 262 310 8.51E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 263 305 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 Pfam PF01965 DJ-1/PfpI family 22 171 8.7E-14 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 SMART SM00342 226 309 4.4E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 Gene3D G3DSA:3.40.50.880 2 196 4.4E-57 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 Pfam PF12833 Helix-turn-helix domain 232 309 1.2E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6127 7130cb56a7bae5d81bba8c5d795f7cae 336 Gene3D G3DSA:1.10.10.60 197 312 1.4E-29 T 31-10-2018 Y89_5556 2da358b2c1f869800ac49bd23603da30 438 SUPERFAMILY SSF103473 8 372 1.57E-41 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5556 2da358b2c1f869800ac49bd23603da30 438 Pfam PF07690 Major Facilitator Superfamily 206 386 1.4E-18 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5556 2da358b2c1f869800ac49bd23603da30 438 Pfam PF00083 Sugar (and other) transporter 39 158 9.6E-8 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_5556 2da358b2c1f869800ac49bd23603da30 438 Gene3D G3DSA:1.20.1250.20 5 189 3.1E-12 T 31-10-2018 Y89_5556 2da358b2c1f869800ac49bd23603da30 438 Gene3D G3DSA:1.20.1250.20 203 380 1.0E-19 T 31-10-2018 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 SMART SM00421 173 230 4.5E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 Pfam PF03472 Autoinducer binding domain 17 158 1.5E-36 T 31-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 Gene3D G3DSA:3.30.450.80 1 167 1.7E-67 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 SUPERFAMILY SSF75516 4 166 1.44E-41 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 Gene3D G3DSA:1.10.10.10 168 237 1.8E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 190 1.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 218 1.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 206 1.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 ProSitePatterns PS00622 LuxR-type HTH domain signature. 190 217 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 Pfam PF00196 Bacterial regulatory proteins, luxR family 175 230 7.2E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3426 ec99ef81dc7a9d4be5fb76c15ff52681 237 SUPERFAMILY SSF46894 163 236 2.48E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_2720 14991a32966bf2ecb66c6589be1c905c 291 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 167 246 5.8E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2720 14991a32966bf2ecb66c6589be1c905c 291 SUPERFAMILY SSF46626 157 276 4.07E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2720 14991a32966bf2ecb66c6589be1c905c 291 Gene3D G3DSA:1.10.760.10 23 153 2.8E-38 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2720 14991a32966bf2ecb66c6589be1c905c 291 SUPERFAMILY SSF46626 39 146 7.96E-27 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2720 14991a32966bf2ecb66c6589be1c905c 291 Gene3D G3DSA:1.10.760.10 161 271 1.5E-40 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 500 2.8E-47 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 Pfam PF00672 HAMP domain 206 255 2.0E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 SUPERFAMILY SSF58104 226 535 1.83E-76 T 31-10-2018 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 SMART SM00304 206 258 1.1E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 SMART SM00283 273 534 4.4E-80 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2614 8d41dce0f95ebf0d6b89445344ba1705 535 Gene3D G3DSA:1.10.287.950 206 535 1.5E-77 T 31-10-2018 Y89_2283 76cc8bf61db0dd3e702d9bbf096a0609 109 Pfam PF05957 Bacterial protein of unknown function (DUF883) 17 109 8.1E-29 T 31-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 SUPERFAMILY SSF117457 318 487 8.5E-64 T 31-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 486 4.3E-49 T 31-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 7.1E-102 T 31-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 286 2.0E-66 T 31-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 Pfam PF05683 Fumarase C-terminus 289 488 5.6E-80 T 31-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 PIRSF PIRSF001394 1 506 1.7E-226 T 31-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 Y89_4818 8bf24bf300f122323a783ad8bfc0488e 507 Gene3D G3DSA:3.20.130.10 314 488 5.8E-61 T 31-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Y89_2654 bdb0114b4cf81d070b39cfb93b348e62 209 SMART SM00563 34 157 5.6E-18 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_2654 bdb0114b4cf81d070b39cfb93b348e62 209 Pfam PF01553 Acyltransferase 33 154 9.6E-16 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_2654 bdb0114b4cf81d070b39cfb93b348e62 209 SUPERFAMILY SSF69593 17 205 1.7E-32 T 31-10-2018 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 418 431 7.1E-10 T 31-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 544 552 7.1E-10 T 31-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 492 504 7.1E-10 T 31-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 SMART SM00486 151 558 1.6E-62 T 31-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Pfam PF00136 DNA polymerase family B 380 741 8.9E-39 T 31-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:2.40.50.590 7 151 6.2E-53 T 31-10-2018 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:1.10.132.60 644 788 2.2E-58 T 31-10-2018 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 SUPERFAMILY SSF56672 388 782 3.89E-113 T 31-10-2018 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:3.30.70.2250 42 108 6.2E-53 T 31-10-2018 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 ProSitePatterns PS00116 DNA polymerase family B signature. 546 554 - T 31-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Pfam PF03104 DNA polymerase family B, exonuclease domain 74 299 1.7E-11 T 31-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 SUPERFAMILY SSF53098 6 392 7.59E-95 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:3.90.1600.10 351 447 7.5E-30 T 31-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:3.90.1600.10 451 637 3.8E-55 T 31-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3439 3d61fc3f39ce6084370f702a752e2705 788 Gene3D G3DSA:3.30.420.10 154 350 3.5E-74 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF103088 235 345 3.27E-39 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 Pfam PF05736 OprF membrane domain 1 188 2.2E-97 T 31-10-2018 IPR008722 Outer membrane porin F, N-terminal Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF56925 45 188 6.54E-17 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 Gene3D G3DSA:3.30.1330.60 222 350 2.1E-43 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 Gene3D G3DSA:2.40.160.20 15 184 1.4E-57 T 31-10-2018 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 Pfam PF00691 OmpA family 244 339 2.0E-24 T 31-10-2018 IPR006665 OmpA-like domain Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 244 266 7.4E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 289 305 7.4E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 PRINTS PR01021 OMPA domain signature 274 289 7.4E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 ProSitePatterns PS01068 OmpA-like domain. 276 321 - T 31-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Y89_3555 171eacef143b342c9f2b7bca29db9fc0 350 SUPERFAMILY SSF103647 198 232 4.84E-7 T 31-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 SUPERFAMILY SSF52151 3 283 4.53E-50 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 Gene3D G3DSA:3.40.366.10 7 280 4.0E-69 T 31-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 305 1.7E-20 T 31-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 3 303 5.4E-112 T 31-10-2018 IPR017554 Malonate decarboxylase, McdH subunit Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 SUPERFAMILY SSF55048 122 191 1.7E-10 T 31-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 Pfam PF00698 Acyl transferase domain 5 272 1.4E-27 T 31-10-2018 IPR014043 Acyl transferase Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 Gene3D G3DSA:3.30.70.250 119 191 4.0E-69 T 31-10-2018 Y89_0221 ce53c7fb16c9af52fdf2070b6b218df1 310 PIRSF PIRSF000446 1 301 9.9E-55 T 31-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Y89_4813 4bf301fa38b15b6e04c6815b800439e7 304 Gene3D G3DSA:3.40.50.12370 1 303 3.1E-76 T 31-10-2018 Y89_4813 4bf301fa38b15b6e04c6815b800439e7 304 Pfam PF00582 Universal stress protein family 177 299 2.5E-15 T 31-10-2018 IPR006016 UspA Y89_4813 4bf301fa38b15b6e04c6815b800439e7 304 Pfam PF00582 Universal stress protein family 4 145 1.1E-14 T 31-10-2018 IPR006016 UspA Y89_4813 4bf301fa38b15b6e04c6815b800439e7 304 SUPERFAMILY SSF52402 163 300 3.77E-15 T 31-10-2018 Y89_4813 4bf301fa38b15b6e04c6815b800439e7 304 SUPERFAMILY SSF52402 1 147 2.18E-22 T 31-10-2018 Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 Gene3D G3DSA:3.40.190.10 125 216 6.2E-92 T 31-10-2018 Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 SUPERFAMILY SSF53850 11 259 6.94E-52 T 31-10-2018 Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 Gene3D G3DSA:3.40.190.10 30 248 6.2E-92 T 31-10-2018 Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 SMART SM00062 38 261 1.2E-55 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1531 f01ba497fd34ff5d897d9762d9d1894f 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 258 9.1E-40 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3131 14a172047736140b84ada895cf2cfa37 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 4.8E-9 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_3131 14a172047736140b84ada895cf2cfa37 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 52 1.2E-9 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat Y89_3364 04a4cbfe3ef68b517636ef942c08eaa1 240 Pfam PF00313 'Cold-shock' DNA-binding domain 22 73 4.0E-9 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Y89_3364 04a4cbfe3ef68b517636ef942c08eaa1 240 Gene3D G3DSA:2.40.50.140 2 86 1.8E-15 T 31-10-2018 Y89_3364 04a4cbfe3ef68b517636ef942c08eaa1 240 SUPERFAMILY SSF50249 10 78 3.67E-13 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_3364 04a4cbfe3ef68b517636ef942c08eaa1 240 Pfam PF06961 Protein of unknown function (DUF1294) 153 207 6.6E-24 T 31-10-2018 IPR010718 Protein of unknown function DUF1294 Y89_3364 04a4cbfe3ef68b517636ef942c08eaa1 240 ProSitePatterns PS00352 'Cold-shock' domain signature. 29 48 - T 31-10-2018 IPR019844 Cold-shock conserved site Y89_4817 5b4b4b586bc2bd2f4689735b444550bf 375 SUPERFAMILY SSF55073 216 366 4.08E-46 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4817 5b4b4b586bc2bd2f4689735b444550bf 375 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 207 367 1.4E-41 T 31-10-2018 IPR000160 GGDEF domain Y89_4817 5b4b4b586bc2bd2f4689735b444550bf 375 Gene3D G3DSA:3.30.70.270 211 375 7.4E-58 T 31-10-2018 Y89_4817 5b4b4b586bc2bd2f4689735b444550bf 375 SMART SM00267 200 369 1.6E-58 T 31-10-2018 IPR000160 GGDEF domain Y89_4817 5b4b4b586bc2bd2f4689735b444550bf 375 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 365 7.1E-43 T 31-10-2018 IPR000160 GGDEF domain Y89_3045 38f1ea2cbace0fb358617538e52ec4a0 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 31-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y89_3045 38f1ea2cbace0fb358617538e52ec4a0 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 371 1.0E-112 T 31-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y89_3045 38f1ea2cbace0fb358617538e52ec4a0 385 Gene3D G3DSA:1.20.1090.10 185 383 8.4E-62 T 31-10-2018 Y89_3045 38f1ea2cbace0fb358617538e52ec4a0 385 SUPERFAMILY SSF56796 3 381 1.57E-114 T 31-10-2018 Y89_3045 38f1ea2cbace0fb358617538e52ec4a0 385 Gene3D G3DSA:3.40.50.1970 1 183 2.5E-55 T 31-10-2018 Y89_3780 1776b5d56bb0b0baa8c165a2b0241b2b 202 Gene3D G3DSA:1.10.760.10 40 202 1.2E-80 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3780 1776b5d56bb0b0baa8c165a2b0241b2b 202 SUPERFAMILY SSF46626 15 192 7.07E-31 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3780 1776b5d56bb0b0baa8c165a2b0241b2b 202 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 179 5.2E-84 T 31-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y89_3780 1776b5d56bb0b0baa8c165a2b0241b2b 202 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 3 178 8.2E-86 T 31-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y89_0186 d912720ef560d423590c34d0d2491ec9 200 Gene3D G3DSA:3.30.1330.200 23 177 4.6E-51 T 31-10-2018 IPR038592 CheD-like superfamily Y89_0186 d912720ef560d423590c34d0d2491ec9 200 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 19 172 28.442 T 31-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Y89_0186 d912720ef560d423590c34d0d2491ec9 200 SUPERFAMILY SSF64438 24 169 8.42E-49 T 31-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y89_0186 d912720ef560d423590c34d0d2491ec9 200 Pfam PF03975 CheD chemotactic sensory transduction 66 168 1.4E-31 T 31-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Y89_2599 b8c9398d1dd921434df70a6c0de955ae 304 Pfam PF00892 EamA-like transporter family 155 286 4.9E-19 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2599 b8c9398d1dd921434df70a6c0de955ae 304 Pfam PF00892 EamA-like transporter family 8 140 6.0E-23 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2599 b8c9398d1dd921434df70a6c0de955ae 304 SUPERFAMILY SSF103481 40 144 1.31E-14 T 31-10-2018 Y89_2599 b8c9398d1dd921434df70a6c0de955ae 304 SUPERFAMILY SSF103481 191 287 3.79E-13 T 31-10-2018 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 44.358 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Gene3D G3DSA:3.90.230.10 1 259 3.5E-126 T 31-10-2018 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 SUPERFAMILY SSF55920 4 254 1.44E-95 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 167 185 - T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 192 204 2.9E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 161 173 2.9E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 2.9E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 91 107 2.9E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 Pfam PF00557 Metallopeptidase family M24 12 241 1.0E-59 T 31-10-2018 IPR000994 Peptidase M24 Y89_1369 94d89c7b2d7f9dda8fb9b688b18b02eb 261 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 249 1.7E-105 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1044 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.3E-113 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82866 296 497 1.07E-49 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82693 38 130 1.8E-28 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82693 135 330 2.04E-26 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.70.1430 38 819 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.2090.10 723 811 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82714 182 271 1.07E-22 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:1.20.1640.10 8 514 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.70.1430 569 670 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82693 567 671 1.31E-30 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:3.30.70.1440 671 867 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82714 724 811 9.16E-23 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 SUPERFAMILY SSF82866 808 1027 1.96E-46 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Gene3D G3DSA:1.20.1640.10 515 1024 0.0 T 31-10-2018 Y89_0449 9c0dcf29a28231d766d59cb9274bb230 1046 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 SMART SM00448 2 113 1.3E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 222 4.8E-16 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 SUPERFAMILY SSF46894 123 223 1.02E-21 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 SUPERFAMILY SSF52172 4 128 8.25E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 Gene3D G3DSA:3.40.50.2300 1 118 2.9E-33 T 31-10-2018 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 SMART SM00862 147 223 3.5E-16 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 Pfam PF00072 Response regulator receiver domain 5 113 1.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1811 5c23d62536a0f573f9e3b6cd54c64c34 225 Gene3D G3DSA:1.10.10.10 119 225 9.6E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2458 c5399997e6b7e9885bbf3a663cc5a6a8 389 SMART SM00558 101 225 8.3E-5 T 31-10-2018 IPR003347 JmjC domain Y89_2458 c5399997e6b7e9885bbf3a663cc5a6a8 389 Pfam PF08007 Cupin superfamily protein 16 319 2.8E-106 T 31-10-2018 IPR003347 JmjC domain Y89_2458 c5399997e6b7e9885bbf3a663cc5a6a8 389 Gene3D G3DSA:1.10.10.2510 215 389 7.0E-44 T 31-10-2018 Y89_2458 c5399997e6b7e9885bbf3a663cc5a6a8 389 Gene3D G3DSA:2.60.120.650 1 214 5.8E-95 T 31-10-2018 Y89_2458 c5399997e6b7e9885bbf3a663cc5a6a8 389 SUPERFAMILY SSF51197 6 300 7.28E-79 T 31-10-2018 Y89_4962 774bf8485e5cbc489de53476ee622046 449 SUPERFAMILY SSF111283 15 449 9.68E-128 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Y89_4962 774bf8485e5cbc489de53476ee622046 449 Gene3D G3DSA:3.30.2290.10 1 235 2.5E-105 T 31-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Y89_4962 774bf8485e5cbc489de53476ee622046 449 Pfam PF01523 Putative modulator of DNA gyrase 35 326 7.9E-62 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y89_5376 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 SUPERFAMILY SSF46785 6 131 4.89E-41 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5376 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 Pfam PF01475 Ferric uptake regulator family 9 129 1.4E-45 T 31-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Y89_5376 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 Gene3D G3DSA:1.10.10.10 1 83 6.9E-38 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5376 0fc4f1cf0a34ed8f04cb6c9bbb28ae2b 134 Gene3D G3DSA:3.30.1490.190 85 134 2.4E-18 T 31-10-2018 Y89_3807 4090c02117311a077c68f9b088810091 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 247 4.1E-11 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3807 4090c02117311a077c68f9b088810091 248 Gene3D G3DSA:3.40.190.10 115 213 9.8E-13 T 31-10-2018 Y89_3807 4090c02117311a077c68f9b088810091 248 SUPERFAMILY SSF53850 28 247 5.43E-21 T 31-10-2018 Y89_3807 4090c02117311a077c68f9b088810091 248 Gene3D G3DSA:3.40.190.10 48 247 9.8E-13 T 31-10-2018 Y89_1825 9219fe0708f0962634a70c12f781949f 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 1.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1825 9219fe0708f0962634a70c12f781949f 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 1.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1825 9219fe0708f0962634a70c12f781949f 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 423 1.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1825 9219fe0708f0962634a70c12f781949f 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 437 1.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_1825 9219fe0708f0962634a70c12f781949f 482 Pfam PF00672 HAMP domain 227 274 2.2E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1825 9219fe0708f0962634a70c12f781949f 482 SUPERFAMILY SSF47384 263 322 1.79E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1825 9219fe0708f0962634a70c12f781949f 482 Gene3D G3DSA:3.30.565.10 337 478 2.4E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1825 9219fe0708f0962634a70c12f781949f 482 SUPERFAMILY SSF158472 228 276 6.54E-5 T 31-10-2018 Y89_1825 9219fe0708f0962634a70c12f781949f 482 SUPERFAMILY SSF55874 338 478 4.58E-29 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1825 9219fe0708f0962634a70c12f781949f 482 SMART SM00387 375 480 2.6E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1825 9219fe0708f0962634a70c12f781949f 482 SMART SM00304 226 278 3.6E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_1825 9219fe0708f0962634a70c12f781949f 482 Pfam PF00512 His Kinase A (phospho-acceptor) domain 280 317 5.4E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1825 9219fe0708f0962634a70c12f781949f 482 Gene3D G3DSA:1.10.287.130 230 336 3.9E-19 T 31-10-2018 Y89_1825 9219fe0708f0962634a70c12f781949f 482 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 376 477 1.8E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1825 9219fe0708f0962634a70c12f781949f 482 SMART SM00388 279 337 1.8E-5 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_0385 ccc563b43c3b903f80a694132455a010 531 Gene3D G3DSA:3.50.50.60 32 514 4.9E-40 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0385 ccc563b43c3b903f80a694132455a010 531 SUPERFAMILY SSF51905 16 528 9.21E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0385 ccc563b43c3b903f80a694132455a010 531 Pfam PF00732 GMC oxidoreductase 32 296 1.7E-49 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_0385 ccc563b43c3b903f80a694132455a010 531 Pfam PF05199 GMC oxidoreductase 384 518 1.1E-21 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_0385 ccc563b43c3b903f80a694132455a010 531 Gene3D G3DSA:3.30.560.10 68 464 4.9E-40 T 31-10-2018 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 Gene3D G3DSA:3.40.30.10 1 108 7.0E-36 T 31-10-2018 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 PIRSF PIRSF000077 2 108 2.8E-46 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 Pfam PF00085 Thioredoxin 5 106 4.6E-35 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.2E-10 T 31-10-2018 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.2E-10 T 31-10-2018 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.2E-10 T 31-10-2018 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 2.4E-39 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Y89_5928 2d836068f7e47d29b41c894e372dff5a 108 SUPERFAMILY SSF52833 3 106 4.89E-40 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2801 cf70800203c4fd763d25103f762c1007 815 Pfam PF00593 TonB dependent receptor 341 814 8.9E-40 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2801 cf70800203c4fd763d25103f762c1007 815 SMART SM00965 63 114 4.3E-4 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_2801 cf70800203c4fd763d25103f762c1007 815 Pfam PF07715 TonB-dependent Receptor Plug Domain 157 257 1.4E-14 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2801 cf70800203c4fd763d25103f762c1007 815 SUPERFAMILY SSF56935 120 815 1.25E-110 T 31-10-2018 Y89_2801 cf70800203c4fd763d25103f762c1007 815 Gene3D G3DSA:3.55.50.30 38 112 1.1E-22 T 31-10-2018 Y89_2801 cf70800203c4fd763d25103f762c1007 815 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 158 813 7.6E-99 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2801 cf70800203c4fd763d25103f762c1007 815 Gene3D G3DSA:2.170.130.10 135 265 4.7E-35 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2801 cf70800203c4fd763d25103f762c1007 815 Gene3D G3DSA:2.40.170.20 266 815 2.9E-137 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 PIRSF PIRSF004808 1 251 2.1E-72 T 31-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 Pfam PF00588 SpoU rRNA Methylase family 5 155 2.9E-34 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 SUPERFAMILY SSF75217 4 170 1.18E-38 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 Gene3D G3DSA:1.10.8.590 182 245 8.9E-24 T 31-10-2018 Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 Gene3D G3DSA:3.40.1280.10 1 167 4.7E-72 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_1209 7c5b8f4d4100a7c0e26ebff6e2b69368 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 2 245 6.4E-76 T 31-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Y89_5189 7c22761197499796d41d34606faccc8c 381 Gene3D G3DSA:3.30.479.30 185 309 1.0E-23 T 31-10-2018 Y89_5189 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 239 256 2.5E-16 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5189 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 283 301 2.5E-16 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5189 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 302 323 2.5E-16 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5189 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 204 225 2.5E-16 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5189 7c22761197499796d41d34606faccc8c 381 PRINTS PR00721 Stomatin signature 327 350 2.5E-16 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5189 7c22761197499796d41d34606faccc8c 381 SMART SM00244 148 307 8.4E-15 T 31-10-2018 IPR001107 Band 7 domain Y89_5189 7c22761197499796d41d34606faccc8c 381 SUPERFAMILY SSF117892 187 313 7.59E-26 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_5189 7c22761197499796d41d34606faccc8c 381 Pfam PF01145 SPFH domain / Band 7 family 152 323 3.2E-22 T 31-10-2018 IPR001107 Band 7 domain Y89_5179 e8aa95870f619f79f1c83e5da5a3e681 205 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 202 3.6E-26 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_5179 e8aa95870f619f79f1c83e5da5a3e681 205 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 4 108 2.9E-24 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y89_5179 e8aa95870f619f79f1c83e5da5a3e681 205 Gene3D G3DSA:1.10.287.460 5 68 1.4E-16 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 Y89_5179 e8aa95870f619f79f1c83e5da5a3e681 205 SUPERFAMILY SSF54534 7 204 2.95E-55 T 31-10-2018 Y89_5179 e8aa95870f619f79f1c83e5da5a3e681 205 Gene3D G3DSA:3.10.50.40 69 205 1.7E-48 T 31-10-2018 Y89_5409 dcb7bef4350f30d9a8c6a616b88601bf 155 Gene3D G3DSA:2.40.50.100 9 136 3.1E-25 T 31-10-2018 Y89_5409 dcb7bef4350f30d9a8c6a616b88601bf 155 SUPERFAMILY SSF51230 10 120 9.42E-23 T 31-10-2018 IPR011053 Single hybrid motif Y89_5409 dcb7bef4350f30d9a8c6a616b88601bf 155 Pfam PF01597 Glycine cleavage H-protein 16 133 1.0E-23 T 31-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 1.1E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 1.1E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 1.1E-13 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 SUPERFAMILY SSF46894 146 218 1.84E-22 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 SMART SM00448 12 125 3.8E-34 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 213 1.4E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 Gene3D G3DSA:3.40.50.12740 12 219 7.5E-70 T 31-10-2018 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 Pfam PF00072 Response regulator receiver domain 15 126 8.1E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 SUPERFAMILY SSF52172 11 143 4.55E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1147 a2052e4cde379f185910616fa5c80dd8 219 SMART SM00421 156 213 8.2E-28 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 588 9.2E-25 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 Pfam PF00501 AMP-binding enzyme 64 500 6.0E-85 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 Gene3D G3DSA:3.30.300.30 496 625 1.0E-25 T 31-10-2018 Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 SUPERFAMILY SSF56801 3 623 1.83E-156 T 31-10-2018 Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 Gene3D G3DSA:3.40.50.12780 35 493 1.1E-102 T 31-10-2018 Y89_1458 c9f502fecffdedf2818bf50f85d6ff05 628 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 56 3.4E-13 T 31-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PIRSF PIRSF000110 2 488 2.6E-172 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 Gene3D G3DSA:3.30.360.10 178 475 2.4E-170 T 31-10-2018 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 188 1.5E-54 T 31-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 329 355 6.5E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 238 254 6.5E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 144 157 6.5E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 220 237 6.5E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 168 196 6.5E-49 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 Gene3D G3DSA:3.40.50.720 12 436 2.4E-170 T 31-10-2018 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 190 486 5.5E-119 T 31-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 488 82.393 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 486 2.2E-174 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 SUPERFAMILY SSF55347 178 487 6.21E-116 T 31-10-2018 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 178 184 - T 31-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Y89_6179 60d741b5ce65000c43a112371c918bc3 488 SUPERFAMILY SSF51735 5 191 4.13E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 Gene3D G3DSA:1.10.10.10 101 184 4.7E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 SUPERFAMILY SSF88659 102 183 5.42E-16 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 Pfam PF08281 Sigma-70, region 4 127 178 5.1E-16 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 38 179 6.7E-25 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 Gene3D G3DSA:1.10.1740.10 17 91 1.3E-8 T 31-10-2018 Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 Pfam PF04542 Sigma-70 region 2 35 95 1.0E-14 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_0162 715e424e6a5b3da7a455c630d87cfdda 195 SUPERFAMILY SSF88946 31 107 1.73E-13 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1253 1097218081802e36b23b48f715939486 380 SUPERFAMILY SSF52768 2 355 4.8E-105 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_1253 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 140 163 8.9E-15 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_1253 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 259 269 8.9E-15 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_1253 1097218081802e36b23b48f715939486 380 PRINTS PR01270 Histone deacetylase superfamily signature 174 189 8.9E-15 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_1253 1097218081802e36b23b48f715939486 380 Pfam PF00850 Histone deacetylase domain 42 328 1.3E-77 T 31-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_1253 1097218081802e36b23b48f715939486 380 Gene3D G3DSA:3.40.800.20 2 380 6.0E-158 T 31-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 125 1.4E-35 T 31-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 31-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 Pfam PF01814 Hemerythrin HHE cation binding domain 13 125 1.6E-13 T 31-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 Gene3D G3DSA:1.20.120.50 2 131 7.1E-35 T 31-10-2018 IPR035938 Hemerythrin-like superfamily Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 Hamap MF_00556 Bacteriohemerythrin. 3 125 24.869 T 31-10-2018 IPR023504 Bacteriohemerythrin-like protein Y89_3661 57cf38bdc8fb2666c21e763184a3f6c0 153 SUPERFAMILY SSF47188 1 125 3.01E-32 T 31-10-2018 IPR035938 Hemerythrin-like superfamily Y89_2518 56c944c1c9c506f85ee126642f6bb1ae 301 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 31-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 Y89_2518 56c944c1c9c506f85ee126642f6bb1ae 301 Pfam PF00682 HMGL-like 7 278 7.8E-55 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y89_2518 56c944c1c9c506f85ee126642f6bb1ae 301 Gene3D G3DSA:3.20.20.70 1 300 5.5E-140 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2518 56c944c1c9c506f85ee126642f6bb1ae 301 SUPERFAMILY SSF51569 3 295 3.85E-75 T 31-10-2018 Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 SUPERFAMILY SSF55060 160 277 2.73E-33 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 Gene3D G3DSA:3.30.230.10 1 160 3.0E-56 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 SUPERFAMILY SSF54211 7 158 1.97E-47 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 Gene3D G3DSA:3.30.70.890 161 279 7.0E-28 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 PIRSF PIRSF010376 3 279 5.5E-87 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 Pfam PF08544 GHMP kinases C terminal 203 254 5.4E-5 T 31-10-2018 IPR013750 GHMP kinase, C-terminal domain Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 Pfam PF00288 GHMP kinases N terminal domain 87 144 1.3E-10 T 31-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 278 6.9E-84 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y89_5280 57e2b74a83b17d19df98d433dd35f4cd 282 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 5 271 33.125 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 Gene3D G3DSA:3.60.10.10 1 269 3.8E-77 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 262 1.7E-16 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 269 5.1E-95 T 31-10-2018 Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 269 6.7E-83 T 31-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 SUPERFAMILY SSF56219 1 269 3.4E-83 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_2646 b4a9b1c05642a849a5b2aa7a6fac3296 270 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 31-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 SUPERFAMILY SSF51735 6 185 9.86E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 Gene3D G3DSA:1.10.1040.10 189 313 2.9E-27 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 8 318 54.18 T 31-10-2018 IPR026578 L-carnitine dehydrogenase MetaCyc: PWY-3602|MetaCyc: PWY-7472 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 SUPERFAMILY SSF48179 188 275 1.28E-14 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 184 1.0E-39 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 Gene3D G3DSA:3.40.50.720 7 188 3.3E-48 T 31-10-2018 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 PIRSF PIRSF000105 4 301 1.9E-55 T 31-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 Y89_6124 ea0735c99aa431f9e5e7277cf4733620 321 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 256 4.2E-15 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 SMART SM00968 520 615 6.9E-10 T 31-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1153 0.0 T 31-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 SUPERFAMILY SSF52540 1 1138 1.73E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 SUPERFAMILY SSF52540 772 1156 3.41E-35 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1155 23.408 T 31-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 PIRSF PIRSF005719 1 1162 8.6E-268 T 31-10-2018 IPR024704 Structural maintenance of chromosomes protein Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1146 4.8E-68 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 SUPERFAMILY SSF75553 469 662 1.57E-6 T 31-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 Gene3D G3DSA:3.40.50.300 851 1161 2.5E-48 T 31-10-2018 Y89_3811 f628567871e6ceca8abb486d3cf7b37b 1162 Gene3D G3DSA:3.40.50.300 1 251 6.1E-56 T 31-10-2018 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 Gene3D G3DSA:3.40.50.1390 5 127 2.2E-40 T 31-10-2018 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 ProSitePatterns PS00398 Site-specific recombinases signature 2. 55 67 - T 31-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 SMART SM00857 5 139 8.1E-49 T 31-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 Gene3D G3DSA:1.10.10.60 141 186 3.0E-5 T 31-10-2018 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 ProSitePatterns PS00397 Site-specific recombinases active site. 8 16 - T 31-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 SUPERFAMILY SSF53041 6 139 9.16E-41 T 31-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 Pfam PF02796 Helix-turn-helix domain of resolvase 141 184 3.9E-14 T 31-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 Pfam PF00239 Resolvase, N terminal domain 6 139 7.3E-40 T 31-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y89_4688 8f2acb25af98c46979a3ac9b8e88c44a 186 SUPERFAMILY SSF46689 141 183 1.03E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0383 017f748384755b133aef000d940ba85c 83 Pfam PF00037 4Fe-4S binding domain 5 25 3.3E-6 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_0383 017f748384755b133aef000d940ba85c 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_0383 017f748384755b133aef000d940ba85c 83 SUPERFAMILY SSF54862 5 76 1.08E-19 T 31-10-2018 Y89_0383 017f748384755b133aef000d940ba85c 83 Gene3D G3DSA:3.30.70.20 2 83 1.5E-36 T 31-10-2018 Y89_0811 877d7450b24ff61c5aa40704a412f33e 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 14 162 3.0E-85 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_0811 877d7450b24ff61c5aa40704a412f33e 162 Pfam PF03284 Phenazine biosynthesis protein A/B 10 162 1.3E-89 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_0811 877d7450b24ff61c5aa40704a412f33e 162 SUPERFAMILY SSF54427 19 148 1.43E-24 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_0811 877d7450b24ff61c5aa40704a412f33e 162 Gene3D G3DSA:3.10.450.50 12 152 8.4E-48 T 31-10-2018 Y89_3147 9e10a5d81021144bb7e477b17952d880 285 SUPERFAMILY SSF141868 29 264 1.16E-38 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3147 9e10a5d81021144bb7e477b17952d880 285 SMART SM00052 22 264 1.2E-12 T 31-10-2018 IPR001633 EAL domain Y89_3147 9e10a5d81021144bb7e477b17952d880 285 Gene3D G3DSA:3.20.20.450 22 268 9.1E-44 T 31-10-2018 IPR035919 EAL domain superfamily Y89_3147 9e10a5d81021144bb7e477b17952d880 285 Pfam PF00563 EAL domain 28 259 2.0E-40 T 31-10-2018 IPR001633 EAL domain Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.90.190.20 311 448 6.0E-43 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Pfam PF08245 Mur ligase middle domain 114 285 5.3E-26 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 380 1.3E-7 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF53244 305 447 7.1E-47 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 447 34.528 T 31-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.40.50.720 7 96 3.4E-18 T 31-10-2018 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 Gene3D G3DSA:3.40.1190.10 98 305 1.3E-65 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 445 9.8E-118 T 31-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF51984 11 97 5.62E-15 T 31-10-2018 Y89_4903 486b2a5939f7e849db1b825e4a12af5a 448 SUPERFAMILY SSF53623 100 303 2.62E-52 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 Pfam PF12848 ABC transporter 217 295 9.5E-30 T 31-10-2018 IPR032781 ABC-transporter extension domain Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 Pfam PF00005 ABC transporter 328 459 5.3E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 Pfam PF00005 ABC transporter 18 178 2.7E-20 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 SMART SM00382 26 223 1.3E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 SMART SM00382 337 504 2.1E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 Gene3D G3DSA:3.40.50.300 276 534 6.1E-53 T 31-10-2018 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 Gene3D G3DSA:3.40.50.300 1 259 1.4E-57 T 31-10-2018 Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 SUPERFAMILY SSF52540 2 256 1.75E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5940 aaba981630d58d710f8a0c14526e3fba 638 SUPERFAMILY SSF52540 298 518 1.08E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3841 f798c8057bf28939c6f452ace9ea8f70 304 PIRSF PIRSF016502 3 301 6.1E-71 T 31-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 Y89_3841 f798c8057bf28939c6f452ace9ea8f70 304 Pfam PF03253 Urea transporter 11 282 1.3E-50 T 31-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 Y89_3841 f798c8057bf28939c6f452ace9ea8f70 304 Gene3D G3DSA:1.10.3430.10 1 294 5.5E-53 T 31-10-2018 IPR029020 Ammonium/urea transporter Y89_1186 52833517acaa2089fe7b4724e694cad4 264 SUPERFAMILY SSF52540 1 233 8.48E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1186 52833517acaa2089fe7b4724e694cad4 264 Gene3D G3DSA:3.40.50.300 1 252 1.7E-56 T 31-10-2018 Y89_1186 52833517acaa2089fe7b4724e694cad4 264 SMART SM00382 31 225 8.5E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1186 52833517acaa2089fe7b4724e694cad4 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1186 52833517acaa2089fe7b4724e694cad4 264 Pfam PF00005 ABC transporter 22 177 7.3E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1415 84eac3b6f77dbef7a9bd614763e0a594 136 Gene3D G3DSA:3.30.300.250 19 136 4.9E-59 T 31-10-2018 Y89_1415 84eac3b6f77dbef7a9bd614763e0a594 136 Pfam PF13652 Putative quorum-sensing-regulated virulence factor 20 131 3.4E-64 T 31-10-2018 IPR025203 Putative quorum-sensing-regulated virulence factor, QSregVF Y89_1137 2c9b6541d88d2dcd24cbefcfd84890c3 424 Pfam PF00999 Sodium/hydrogen exchanger family 8 409 1.6E-74 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_1137 2c9b6541d88d2dcd24cbefcfd84890c3 424 Gene3D G3DSA:1.20.1530.20 2 415 1.5E-15 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_4792 3bbf8e8b31998359e2e6f19cdc3ed696 496 Gene3D G3DSA:3.40.50.300 206 385 1.3E-18 T 31-10-2018 Y89_4792 3bbf8e8b31998359e2e6f19cdc3ed696 496 Pfam PF05872 Bacterial protein of unknown function (DUF853) 9 495 1.2E-227 T 31-10-2018 IPR033186 Helicase HerA-like C-terminal Y89_4792 3bbf8e8b31998359e2e6f19cdc3ed696 496 Gene3D G3DSA:3.40.50.300 12 141 4.3E-10 T 31-10-2018 Y89_4792 3bbf8e8b31998359e2e6f19cdc3ed696 496 SMART SM00382 25 331 5.9E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4792 3bbf8e8b31998359e2e6f19cdc3ed696 496 SUPERFAMILY SSF52540 7 386 1.71E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM01086 317 412 8.9E-35 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 412 2.3E-207 T 31-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM00382 112 333 2.5E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 SUPERFAMILY SSF52540 65 403 3.57E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 311 2.6E-50 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 395 2.3E-16 T 31-10-2018 IPR019489 Clp ATPase, C-terminal Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 SMART SM00994 13 52 2.5E-24 T 31-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 SUPERFAMILY SSF57716 14 49 1.14E-11 T 31-10-2018 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Gene3D G3DSA:3.40.50.300 58 315 7.8E-110 T 31-10-2018 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Pfam PF06689 ClpX C4-type zinc finger 14 51 3.9E-20 T 31-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.844 T 31-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Gene3D G3DSA:1.10.8.60 316 423 8.5E-42 T 31-10-2018 Y89_3527 8f7bec34ebbfb44721683e2d983a6e3b 426 Gene3D G3DSA:3.30.50.30 3 53 5.6E-26 T 31-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily Y89_5618 f3f1fa3907e7e1c6119c4c44a142e773 155 Gene3D G3DSA:3.40.50.300 2 152 8.3E-43 T 31-10-2018 Y89_5618 f3f1fa3907e7e1c6119c4c44a142e773 155 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 11 138 3.7E-47 T 31-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Y89_5618 f3f1fa3907e7e1c6119c4c44a142e773 155 SUPERFAMILY SSF52540 29 128 6.27E-25 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5618 f3f1fa3907e7e1c6119c4c44a142e773 155 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 11 130 2.2E-39 T 31-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Y89_2890 cabcfec14157af8a9a2054dd0ad075a5 309 Gene3D G3DSA:3.90.1690.10 1 309 2.4E-78 T 31-10-2018 Y89_2890 cabcfec14157af8a9a2054dd0ad075a5 309 SUPERFAMILY SSF47954 97 155 9.86E-5 T 31-10-2018 IPR036915 Cyclin-like superfamily Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 Pfam PF00248 Aldo/keto reductase family 15 311 2.0E-72 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 SUPERFAMILY SSF51430 1 313 1.28E-99 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 PRINTS PR00069 Aldo-keto reductase signature 45 69 7.7E-6 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 PRINTS PR00069 Aldo-keto reductase signature 142 159 7.7E-6 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 PRINTS PR00069 Aldo-keto reductase signature 111 129 7.7E-6 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_3593 25b07914e748d01ca58a1f477fd15e37 323 Gene3D G3DSA:3.20.20.100 1 323 3.3E-117 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 SUPERFAMILY SSF56014 120 285 5.37E-47 T 31-10-2018 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 SUPERFAMILY SSF55124 1 125 3.76E-30 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Gene3D G3DSA:3.90.480.10 53 389 1.7E-80 T 31-10-2018 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 SUPERFAMILY SSF56014 409 548 5.5E-38 T 31-10-2018 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 329 398 4.6E-15 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 2.7E-17 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 412 547 2.5E-10 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Gene3D G3DSA:3.30.413.10 408 552 1.4E-31 T 31-10-2018 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Gene3D G3DSA:3.30.413.10 119 319 1.7E-80 T 31-10-2018 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 SUPERFAMILY SSF55124 252 421 1.39E-24 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_3491 41fb8fd25eea77ff27839b9751d58b71 552 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 272 5.7E-41 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 Gene3D G3DSA:3.40.190.10 165 262 1.1E-41 T 31-10-2018 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 SUPERFAMILY SSF46785 2 86 1.19E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6031 2f23e489114d62892c5910664e64c5ae 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 4.2E-22 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 Pfam PF03466 LysR substrate binding domain 92 293 1.2E-33 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_6031 2f23e489114d62892c5910664e64c5ae 305 Gene3D G3DSA:1.10.10.10 7 96 4.6E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6031 2f23e489114d62892c5910664e64c5ae 305 Gene3D G3DSA:3.40.190.10 101 289 1.1E-41 T 31-10-2018 Y89_6031 2f23e489114d62892c5910664e64c5ae 305 SUPERFAMILY SSF53850 93 296 1.77E-29 T 31-10-2018 Y89_2626 0960db8cd37412694a2052edea6d4980 170 Gene3D G3DSA:3.10.450.160 83 170 1.0E-30 T 31-10-2018 Y89_2626 0960db8cd37412694a2052edea6d4980 170 Pfam PF11776 Nickel/cobalt transporter regulator 136 162 3.3E-6 T 31-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB Y89_4129 a2bfac66ce347488b665cbb9f5991023 259 Pfam PF02525 Flavodoxin-like fold 1 214 5.0E-57 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_4129 a2bfac66ce347488b665cbb9f5991023 259 SUPERFAMILY SSF52218 1 257 5.19E-72 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4129 a2bfac66ce347488b665cbb9f5991023 259 Gene3D G3DSA:3.40.50.360 1 258 2.0E-101 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 Pfam PF00593 TonB dependent receptor 257 751 2.3E-59 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 SUPERFAMILY SSF56935 75 753 1.3E-133 T 31-10-2018 Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 82 753 8.2E-98 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 81 178 2.7E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 Gene3D G3DSA:2.40.170.20 192 753 1.0E-191 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_5000 47c0c2e15e90ed2685c47ca493a4ffa6 753 Gene3D G3DSA:2.170.130.10 62 191 3.2E-48 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3915 be9297656b685c55ddeb16ace2a3e96e 113 SUPERFAMILY SSF50022 7 111 7.2E-19 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3915 be9297656b685c55ddeb16ace2a3e96e 113 Pfam PF00355 Rieske [2Fe-2S] domain 8 93 6.9E-8 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_3915 be9297656b685c55ddeb16ace2a3e96e 113 Gene3D G3DSA:2.102.10.10 3 112 4.4E-11 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:1.10.357.20 305 482 9.7E-47 T 31-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:1.25.60.10 34 162 7.9E-18 T 31-10-2018 IPR038076 MgtE, N-terminal domain superfamily Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF03448 MgtE intracellular N domain 64 165 1.5E-25 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00924 64 167 1.3E-35 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Gene3D G3DSA:3.10.580.10 163 290 6.3E-43 T 31-10-2018 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF54631 167 305 6.6E-29 T 31-10-2018 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF158791 41 164 2.22E-28 T 31-10-2018 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF01769 Divalent cation transporter 351 474 1.6E-26 T 31-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SUPERFAMILY SSF161093 308 481 5.49E-48 T 31-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF00571 CBS domain 167 223 5.4E-4 T 31-10-2018 IPR000644 CBS domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 Pfam PF00571 CBS domain 233 285 8.9E-7 T 31-10-2018 IPR000644 CBS domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00116 238 286 6.4E-5 T 31-10-2018 IPR000644 CBS domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 SMART SM00116 174 227 2.7 T 31-10-2018 IPR000644 CBS domain Y89_4446 d5faef30d783b38cd1652e60568cfe4a 482 TIGRFAM TIGR00400 mgtE: magnesium transporter 44 481 3.5E-85 T 31-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Y89_3832 44c43903c90458060f51757750d80ed0 109 PIRSF PIRSF029416 1 109 5.8E-51 T 31-10-2018 IPR016919 Uncharacterised conserved protein UCP029416, tyrosine-protein phosphatase, Mlr4629 Y89_3832 44c43903c90458060f51757750d80ed0 109 Gene3D G3DSA:3.40.50.2300 1 40 4.8E-7 T 31-10-2018 Y89_3832 44c43903c90458060f51757750d80ed0 109 Gene3D G3DSA:3.40.50.2300 41 102 2.6E-5 T 31-10-2018 Y89_3832 44c43903c90458060f51757750d80ed0 109 SUPERFAMILY SSF52788 1 107 2.35E-19 T 31-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 Gene3D G3DSA:3.40.190.10 104 270 2.7E-46 T 31-10-2018 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 Pfam PF03466 LysR substrate binding domain 101 288 1.4E-28 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 SUPERFAMILY SSF46785 6 119 1.74E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 SUPERFAMILY SSF53850 101 291 6.52E-27 T 31-10-2018 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 72 3.9E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 Gene3D G3DSA:3.40.190.10 170 263 2.7E-46 T 31-10-2018 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4211 15b5c1f35071bc52973b9fa003d52f36 300 Gene3D G3DSA:1.10.10.10 8 94 5.6E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5756 ff7b7a96ba3c009408474c1177564355 416 Pfam PF01266 FAD dependent oxidoreductase 4 394 4.0E-65 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_5756 ff7b7a96ba3c009408474c1177564355 416 Gene3D G3DSA:3.50.50.60 104 396 2.7E-42 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5756 ff7b7a96ba3c009408474c1177564355 416 SUPERFAMILY SSF51905 4 406 6.6E-44 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5756 ff7b7a96ba3c009408474c1177564355 416 SUPERFAMILY SSF54373 267 357 1.31E-13 T 31-10-2018 Y89_5756 ff7b7a96ba3c009408474c1177564355 416 Gene3D G3DSA:3.50.50.60 5 56 2.1E-12 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5756 ff7b7a96ba3c009408474c1177564355 416 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 3 408 54.335 T 31-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 Y89_5756 ff7b7a96ba3c009408474c1177564355 416 Gene3D G3DSA:3.30.9.10 137 356 2.7E-42 T 31-10-2018 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 SUPERFAMILY SSF53335 102 322 3.33E-44 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4711 55168293de4a6f9402bb63523171dc7f 405 Gene3D G3DSA:3.40.50.150 109 361 1.3E-37 T 31-10-2018 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 138 144 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 Pfam PF01555 DNA methylase 135 281 8.9E-24 T 31-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 PIRSF PIRSF015855 17 405 9.7E-102 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 197 216 4.3E-5 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Y89_4711 55168293de4a6f9402bb63523171dc7f 405 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 135 147 4.3E-5 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Y89_2217 bfa4f84708627c67d646502368d49664 310 Pfam PF00005 ABC transporter 21 165 8.4E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2217 bfa4f84708627c67d646502368d49664 310 Gene3D G3DSA:3.40.50.300 1 237 1.0E-64 T 31-10-2018 Y89_2217 bfa4f84708627c67d646502368d49664 310 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2217 bfa4f84708627c67d646502368d49664 310 SMART SM00382 30 213 4.1E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2217 bfa4f84708627c67d646502368d49664 310 SUPERFAMILY SSF52540 4 234 8.88E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4812 8f6f2fbf55583b94e0cfa6ffc4c89674 268 SUPERFAMILY SSF81901 71 241 9.42E-6 T 31-10-2018 Y89_4812 8f6f2fbf55583b94e0cfa6ffc4c89674 268 Pfam PF13174 Tetratricopeptide repeat 94 128 0.0024 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_1184 ca5bc6bb4b292fb41f8840f1aea80999 336 SUPERFAMILY SSF53335 54 313 1.49E-30 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1184 ca5bc6bb4b292fb41f8840f1aea80999 336 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 16 316 55.287 T 31-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 Y89_1184 ca5bc6bb4b292fb41f8840f1aea80999 336 Gene3D G3DSA:3.40.50.150 50 314 2.9E-75 T 31-10-2018 Y89_1184 ca5bc6bb4b292fb41f8840f1aea80999 336 Pfam PF05971 Protein of unknown function (DUF890) 14 314 8.9E-155 T 31-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 Y89_1184 ca5bc6bb4b292fb41f8840f1aea80999 336 PIRSF PIRSF029038 6 326 6.9E-157 T 31-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 Y89_2605 eab06f21c43019765a1cd9a7cff9d63e 177 Pfam PF04352 ProQ/FINO family 40 146 9.3E-32 T 31-10-2018 IPR016103 ProQ/FinO domain Y89_2605 eab06f21c43019765a1cd9a7cff9d63e 177 SUPERFAMILY SSF48657 5 148 3.66E-37 T 31-10-2018 IPR036442 ProQ/FinO domain superfamily Y89_2605 eab06f21c43019765a1cd9a7cff9d63e 177 Gene3D G3DSA:1.10.1710.10 4 153 5.8E-19 T 31-10-2018 IPR036442 ProQ/FinO domain superfamily Y89_2605 eab06f21c43019765a1cd9a7cff9d63e 177 SMART SM00945 36 150 1.2E-43 T 31-10-2018 IPR016103 ProQ/FinO domain Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 Gene3D G3DSA:2.40.30.10 1 100 3.3E-28 T 31-10-2018 Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 Gene3D G3DSA:3.40.50.80 102 258 6.0E-43 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 Pfam PF00970 Oxidoreductase FAD-binding domain 23 94 1.2E-5 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 SUPERFAMILY SSF52343 109 258 1.44E-34 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 SUPERFAMILY SSF63380 7 104 2.15E-21 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 Pfam PF00175 Oxidoreductase NAD-binding domain 117 233 2.0E-13 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 5.5E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 219 227 5.5E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_5223 ab035f5b0db2f86813d37f2cc15632fb 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 56 63 5.5E-5 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_6014 8c883149526e170172e0461bc4e23722 1128 Pfam PF13558 Putative exonuclease SbcCD, C subunit 966 1054 1.9E-15 T 31-10-2018 Y89_6014 8c883149526e170172e0461bc4e23722 1128 Gene3D G3DSA:3.40.1140.10 14 204 8.0E-15 T 31-10-2018 Y89_6014 8c883149526e170172e0461bc4e23722 1128 Pfam PF13555 P-loop containing region of AAA domain 20 79 1.6E-22 T 31-10-2018 Y89_6014 8c883149526e170172e0461bc4e23722 1128 SUPERFAMILY SSF52540 19 1065 1.01E-10 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1362 b7f4c1fed373145535775eb8ecd190e3 115 Pfam PF03960 ArsC family 6 112 3.0E-19 T 31-10-2018 IPR006660 Arsenate reductase-like Y89_1362 b7f4c1fed373145535775eb8ecd190e3 115 Gene3D G3DSA:3.40.30.10 2 115 2.3E-47 T 31-10-2018 Y89_1362 b7f4c1fed373145535775eb8ecd190e3 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 5 111 1.1E-30 T 31-10-2018 IPR006504 Transcriptional regulator Spx/MgsR Y89_1362 b7f4c1fed373145535775eb8ecd190e3 115 SUPERFAMILY SSF52833 3 114 1.37E-35 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Gene3D G3DSA:3.30.450.170 26 149 2.4E-53 T 31-10-2018 IPR038428 2-component histidine kinase, sensor domain superfamily Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00388 234 293 4.4E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 444 1.8E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF55874 282 444 1.7E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00304 177 233 1.6E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF00672 HAMP domain 177 229 2.3E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 4.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 4.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 4.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Gene3D G3DSA:1.10.287.130 181 294 8.4E-17 T 31-10-2018 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SMART SM00387 338 446 1.1E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF158472 177 229 1.31E-5 T 31-10-2018 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 SUPERFAMILY SSF47384 217 292 8.44E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF16750 Sensor domain of 2-component histidine kinase 38 148 2.4E-37 T 31-10-2018 IPR031930 2-component histidine kinase, sensor domain Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Gene3D G3DSA:3.30.565.10 329 446 3.0E-28 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2399 842a0b5f322a1e5ab9822c8665d43481 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 292 2.7E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SMART SM00316 4 72 1.7E-6 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Gene3D G3DSA:2.40.50.140 1 72 8.6E-36 T 31-10-2018 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 1.7E-27 T 31-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.985 T 31-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 3.4E-38 T 31-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Y89_2469 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SUPERFAMILY SSF50249 1 70 1.44E-28 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_2303 03c6f76219412bef5dc08bce94981067 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 Gene3D G3DSA:1.10.720.90 2 55 2.7E-25 T 31-10-2018 Y89_2303 03c6f76219412bef5dc08bce94981067 118 Gene3D G3DSA:1.10.1900.20 56 118 1.5E-28 T 31-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.018 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 2.0E-15 T 31-10-2018 Y89_2303 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.0E-40 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.0E-40 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.0E-40 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 Pfam PF00453 Ribosomal protein L20 3 109 1.0E-48 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.6E-51 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2303 03c6f76219412bef5dc08bce94981067 118 SUPERFAMILY SSF74731 3 116 2.75E-49 T 31-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_4360 84cdd045a200854149fb2f9cf0bfde35 283 Gene3D G3DSA:3.40.47.10 25 199 3.0E-15 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4360 84cdd045a200854149fb2f9cf0bfde35 283 SUPERFAMILY SSF53901 23 156 2.36E-11 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 Gene3D G3DSA:1.10.10.10 2 90 1.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 SMART SM00418 6 88 3.0E-30 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 SUPERFAMILY SSF46785 3 83 2.37E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 5.7E-22 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 5.7E-22 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 5.7E-22 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 5.7E-22 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2977 72315ab1bc35b6156895a44080ccca0d 116 Pfam PF01022 Bacterial regulatory protein, arsR family 13 58 3.6E-13 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 Gene3D G3DSA:3.30.9.10 124 345 1.1E-54 T 31-10-2018 Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 Gene3D G3DSA:3.50.50.60 30 384 1.1E-54 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 Pfam PF01266 FAD dependent oxidoreductase 30 384 4.6E-38 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 SUPERFAMILY SSF51905 29 399 6.47E-38 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 30 52 6.5E-6 T 31-10-2018 Y89_2937 1f8bb64488d42f33e94ea7aeb2f7579d 432 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 162 177 6.5E-6 T 31-10-2018 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 6.2E-16 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 18 37 6.2E-16 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 142 163 6.2E-16 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 6.2E-16 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 Pfam PF00765 Autoinducer synthase 12 185 1.0E-29 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 ProSitePatterns PS00949 Autoinducer synthase family signature. 22 47 - T 31-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 Gene3D G3DSA:3.40.630.30 1 190 1.2E-57 T 31-10-2018 Y89_3907 e4527fef93e1ccd1f5dc9bf57f28f9b6 201 SUPERFAMILY SSF55729 7 191 1.11E-34 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5681 058bdf54b415ac27228f8c3cfad7e711 268 PIRSF PIRSF037318 2 266 1.6E-124 T 31-10-2018 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 Y89_5681 058bdf54b415ac27228f8c3cfad7e711 268 SUPERFAMILY SSF56112 35 193 1.48E-11 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5681 058bdf54b415ac27228f8c3cfad7e711 268 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 21 231 2.0E-70 T 31-10-2018 Y89_3335 3b1bd08d50918e7e2fe63fbb41433f54 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 4 91 26.755 T 31-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 Y89_3335 3b1bd08d50918e7e2fe63fbb41433f54 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 10 90 4.8E-36 T 31-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 Y89_3335 3b1bd08d50918e7e2fe63fbb41433f54 92 Gene3D G3DSA:1.10.10.1150 1 91 9.4E-27 T 31-10-2018 Y89_3335 3b1bd08d50918e7e2fe63fbb41433f54 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 88 1.2E-15 T 31-10-2018 IPR008792 Coenzyme PQQ synthesis D Y89_0993 b134aa69193204bf8e5603a8619f9980 175 SUPERFAMILY SSF50324 3 174 2.09E-68 T 31-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y89_0993 b134aa69193204bf8e5603a8619f9980 175 Gene3D G3DSA:3.90.80.10 1 175 2.9E-78 T 31-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y89_0993 b134aa69193204bf8e5603a8619f9980 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.083 T 31-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y89_0993 b134aa69193204bf8e5603a8619f9980 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 31-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y89_0993 b134aa69193204bf8e5603a8619f9980 175 Pfam PF00719 Inorganic pyrophosphatase 18 172 2.5E-54 T 31-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 SUPERFAMILY SSF53756 203 496 2.83E-12 T 31-10-2018 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 SUPERFAMILY SSF53448 902 1035 1.31E-8 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Gene3D G3DSA:3.40.50.12580 297 426 1.3E-5 T 31-10-2018 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Gene3D G3DSA:3.90.550.10 901 1070 2.7E-12 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 264 496 5.3E-13 T 31-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Gene3D G3DSA:3.90.550.10 1076 1314 2.0E-25 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Pfam PF00535 Glycosyl transferase family 2 1098 1271 9.3E-6 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 Gene3D G3DSA:3.40.50.2000 1520 1665 1.2E-8 T 31-10-2018 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 SUPERFAMILY SSF53756 1412 1677 9.42E-10 T 31-10-2018 Y89_4263 69bb61ce008beec6bf857acf1b47ded5 1694 SUPERFAMILY SSF53448 1091 1308 1.41E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5041 bbfe392a953862f8cfd8ccbff091eb12 66 SUPERFAMILY SSF57716 2 55 1.3E-21 T 31-10-2018 Y89_5041 bbfe392a953862f8cfd8ccbff091eb12 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 57 19.522 T 31-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Y89_5041 bbfe392a953862f8cfd8ccbff091eb12 66 Pfam PF03884 DNA gyrase inhibitor YacG 7 55 1.6E-26 T 31-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Y89_5041 bbfe392a953862f8cfd8ccbff091eb12 66 Gene3D G3DSA:3.30.50.10 1 60 8.9E-25 T 31-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 Y89_1414 8c3b2b9d59dc54166b47e1f8a2092265 73 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 15 68 2.0E-23 T 31-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Y89_1414 8c3b2b9d59dc54166b47e1f8a2092265 73 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 3.5E-31 T 31-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Y89_0789 8958da8d76572fd50d2c39f5842afd04 462 SUPERFAMILY SSF103473 14 395 3.4E-69 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0789 8958da8d76572fd50d2c39f5842afd04 462 Gene3D G3DSA:1.20.1250.20 7 393 7.6E-96 T 31-10-2018 Y89_0789 8958da8d76572fd50d2c39f5842afd04 462 Gene3D G3DSA:3.30.70.100 394 458 1.2E-22 T 31-10-2018 Y89_0789 8958da8d76572fd50d2c39f5842afd04 462 Pfam PF07690 Major Facilitator Superfamily 21 358 4.0E-46 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 SMART SM00480 17 363 9.0E-163 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 244 1.6E-39 T 31-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Gene3D G3DSA:3.10.150.10 1 123 8.9E-51 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Gene3D G3DSA:3.10.150.10 249 367 1.2E-42 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Gene3D G3DSA:3.10.150.10 124 248 8.4E-41 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 SUPERFAMILY SSF55979 246 367 7.25E-38 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 367 2.6E-111 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 2.6E-41 T 31-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 SUPERFAMILY SSF55979 126 245 3.14E-31 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 SUPERFAMILY SSF55979 1 120 1.3E-29 T 31-10-2018 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 247 366 4.2E-41 T 31-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Y89_0002 1bad36d6eb4df7f069b9f70fd53ebd5d 367 PIRSF PIRSF000804 1 367 9.1E-126 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 2.3E-16 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 Pfam PF00005 ABC transporter 23 180 8.5E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 314 8.1E-23 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 Gene3D G3DSA:3.40.50.300 1 319 7.6E-93 T 31-10-2018 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 SUPERFAMILY SSF52540 3 251 3.99E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4991 ec05d4e6936aae96725f4ec385df6fea 324 SMART SM00382 31 230 3.1E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6046 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 3.3E-20 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_6046 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 3.3E-20 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_6046 5b105919850375226c4956c483327c26 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 3.3E-20 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_6046 5b105919850375226c4956c483327c26 162 SUPERFAMILY SSF46785 10 69 1.56E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6046 5b105919850375226c4956c483327c26 162 Gene3D G3DSA:1.10.10.10 1 62 1.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6046 5b105919850375226c4956c483327c26 162 Gene3D G3DSA:3.30.70.920 63 156 6.2E-22 T 31-10-2018 Y89_6046 5b105919850375226c4956c483327c26 162 SMART SM00344 11 120 5.9E-48 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_6046 5b105919850375226c4956c483327c26 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Y89_6046 5b105919850375226c4956c483327c26 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 57 1.6E-19 T 31-10-2018 Y89_6046 5b105919850375226c4956c483327c26 162 SUPERFAMILY SSF54909 73 159 3.35E-20 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_6046 5b105919850375226c4956c483327c26 162 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 1.0E-20 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 48 3.0E-11 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 SUPERFAMILY SSF116842 3 68 4.18E-21 T 31-10-2018 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 PIRSF PIRSF006488 1 80 1.8E-22 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 16.08 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 63 7.4E-22 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 Gene3D G3DSA:1.10.287.1040 2 79 1.3E-23 T 31-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 Y89_0982 6b217a10f7fda159a50473a7c2a6e6d4 80 Pfam PF02609 Exonuclease VII small subunit 9 60 4.8E-20 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Y89_0056 71d795bef02320b54d8f0b3a2498e74f 117 Pfam PF16068 Domain of unknown function (DUF4810) 26 108 2.7E-32 T 31-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats Y89_0056 71d795bef02320b54d8f0b3a2498e74f 117 PIRSF PIRSF020555 1 117 2.2E-59 T 31-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats Y89_3741 39351695d39c61148c6c807ea33a5a32 148 Pfam PF03061 Thioesterase superfamily 62 134 5.9E-13 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_3741 39351695d39c61148c6c807ea33a5a32 148 Gene3D G3DSA:3.10.129.10 4 147 7.4E-53 T 31-10-2018 Y89_3741 39351695d39c61148c6c807ea33a5a32 148 SUPERFAMILY SSF54637 12 145 3.46E-23 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_0541 18b0efbe6526af70491cefe7c2623175 260 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 174 256 2.6E-30 T 31-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal Y89_0541 18b0efbe6526af70491cefe7c2623175 260 Gene3D G3DSA:3.40.50.300 11 179 6.7E-31 T 31-10-2018 Y89_0541 18b0efbe6526af70491cefe7c2623175 260 Pfam PF07728 AAA domain (dynein-related subfamily) 27 161 1.7E-31 T 31-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Y89_0541 18b0efbe6526af70491cefe7c2623175 260 SUPERFAMILY SSF52540 14 235 1.9E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1022 af6617d8ca9f504f51e0180847b56b40 381 Pfam PF01098 Cell cycle protein 31 376 3.7E-113 T 31-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_1022 af6617d8ca9f504f51e0180847b56b40 381 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 333 357 - T 31-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_1022 af6617d8ca9f504f51e0180847b56b40 381 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 28 376 9.5E-135 T 31-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_1022 af6617d8ca9f504f51e0180847b56b40 381 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 22 378 29.441 T 31-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 SUPERFAMILY SSF51735 1 229 7.78E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 Gene3D G3DSA:3.40.50.720 1 229 1.9E-53 T 31-10-2018 Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 Pfam PF00106 short chain dehydrogenase 3 190 1.6E-26 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 3.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0945 123598b7aa8d05ae74fa943bd621e322 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.5E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 2.3E-63 T 31-10-2018 Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.3E-5 T 31-10-2018 Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.6E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 SUPERFAMILY SSF51735 4 246 6.59E-83 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 Gene3D G3DSA:3.40.50.720 1 247 1.3E-85 T 31-10-2018 Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 1.1E-100 T 31-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2053 f8e6c68d25d7da7825ad10287e89cc1d 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.3E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3157 8208900e912d4b1d770684d8de8ed403 310 SUPERFAMILY SSF46785 6 111 8.18E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3157 8208900e912d4b1d770684d8de8ed403 310 Gene3D G3DSA:3.40.190.10 162 262 8.1E-59 T 31-10-2018 Y89_3157 8208900e912d4b1d770684d8de8ed403 310 Gene3D G3DSA:1.10.10.10 3 88 4.7E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3157 8208900e912d4b1d770684d8de8ed403 310 Pfam PF03466 LysR substrate binding domain 88 290 1.0E-42 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3157 8208900e912d4b1d770684d8de8ed403 310 Gene3D G3DSA:3.40.190.10 90 288 8.1E-59 T 31-10-2018 Y89_3157 8208900e912d4b1d770684d8de8ed403 310 SUPERFAMILY SSF53850 87 294 6.88E-43 T 31-10-2018 Y89_3157 8208900e912d4b1d770684d8de8ed403 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.4E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 SMART SM01134 73 232 4.9E-63 T 31-10-2018 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 2.6E-17 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 SUPERFAMILY SSF100950 75 232 4.71E-26 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_3848 0e4b145d825a2c058febe7712c316d76 258 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 31-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.3E-9 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.3E-9 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 Pfam PF00455 DeoR C terminal sensor domain 75 231 2.4E-47 T 31-10-2018 IPR014036 DeoR C-terminal sensor domain Y89_3848 0e4b145d825a2c058febe7712c316d76 258 SMART SM00420 6 58 9.2E-16 T 31-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Y89_3848 0e4b145d825a2c058febe7712c316d76 258 SUPERFAMILY SSF46785 4 77 2.25E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3848 0e4b145d825a2c058febe7712c316d76 258 Gene3D G3DSA:1.10.10.10 1 54 1.5E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1769 b439e58b3085f44731df075cc5596b79 84 Gene3D G3DSA:3.30.1070.10 21 80 5.4E-30 T 31-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Y89_1769 b439e58b3085f44731df075cc5596b79 84 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 20.708 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y89_1769 b439e58b3085f44731df075cc5596b79 84 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 7.6E-38 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y89_1769 b439e58b3085f44731df075cc5596b79 84 SUPERFAMILY SSF55229 33 83 2.48E-17 T 31-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Y89_1769 b439e58b3085f44731df075cc5596b79 84 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 6.5E-28 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Y89_0288 899e24434f443e6286b2524cf1aa36f6 135 Pfam PF07883 Cupin domain 48 117 2.7E-15 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_0288 899e24434f443e6286b2524cf1aa36f6 135 SUPERFAMILY SSF51182 26 118 5.78E-18 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0288 899e24434f443e6286b2524cf1aa36f6 135 Gene3D G3DSA:2.60.120.10 15 125 4.1E-18 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 29 415 4.3E-135 T 31-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 Gene3D G3DSA:1.20.1250.20 19 435 1.1E-71 T 31-10-2018 Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 Pfam PF07690 Major Facilitator Superfamily 58 376 3.7E-30 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 299 316 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_6270 ef7ff4b6c107f2af303fe6e7547b6582 435 SUPERFAMILY SSF103473 21 430 4.84E-70 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 Gene3D G3DSA:3.40.50.2300 148 278 6.9E-110 T 31-10-2018 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 1.1E-23 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.1E-23 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 283 296 1.1E-23 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 1.1E-23 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 334 349 1.1E-23 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 SUPERFAMILY SSF53822 28 371 1.95E-91 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 Gene3D G3DSA:3.40.50.2300 36 350 6.9E-110 T 31-10-2018 Y89_5583 a4fab06ace52f3f354020c741b0d5e45 374 Pfam PF13458 Periplasmic binding protein 29 368 1.1E-64 T 31-10-2018 IPR028081 Leucine-binding protein domain Y89_6303 d860cbf01aadc977b6dc6d33f26e6936 262 SUPERFAMILY SSF52540 1 253 1.32E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6303 d860cbf01aadc977b6dc6d33f26e6936 262 Pfam PF13614 AAA domain 3 178 3.6E-64 T 31-10-2018 IPR025669 AAA domain Y89_6303 d860cbf01aadc977b6dc6d33f26e6936 262 PIRSF PIRSF009320 87 260 1.2E-7 T 31-10-2018 Y89_6303 d860cbf01aadc977b6dc6d33f26e6936 262 PIRSF PIRSF009320 2 85 4.3E-14 T 31-10-2018 Y89_6303 d860cbf01aadc977b6dc6d33f26e6936 262 Gene3D G3DSA:3.40.50.300 1 261 5.8E-79 T 31-10-2018 Y89_0840 8e709741cf86d254f0f8ecd72db7db3c 212 PIRSF PIRSF010372 1 212 3.8E-83 T 31-10-2018 IPR007396 Transcriptional regulator PAI 2-type Y89_0840 8e709741cf86d254f0f8ecd72db7db3c 212 SUPERFAMILY SSF50475 9 192 7.07E-39 T 31-10-2018 Y89_0840 8e709741cf86d254f0f8ecd72db7db3c 212 Gene3D G3DSA:2.30.110.10 1 207 2.0E-66 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_0840 8e709741cf86d254f0f8ecd72db7db3c 212 Pfam PF04299 Putative FMN-binding domain 1 168 2.4E-64 T 31-10-2018 IPR007396 Transcriptional regulator PAI 2-type Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 Gene3D G3DSA:3.40.640.10 2 253 2.6E-93 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 374 1.2E-123 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 SUPERFAMILY SSF53383 5 378 3.32E-111 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 2 380 67.638 T 31-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 PIRSF PIRSF000390 1 382 7.9E-109 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Y89_1475 aa5b9477cea4b71ba883903f221fced3 382 Gene3D G3DSA:3.90.1150.10 254 382 1.7E-36 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 SUPERFAMILY SSF52317 10 207 1.03E-36 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 SUPERFAMILY SSF46689 277 328 2.37E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 SUPERFAMILY SSF46689 224 275 8.78E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 Pfam PF12833 Helix-turn-helix domain 248 326 1.5E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 Gene3D G3DSA:3.40.50.880 8 210 5.2E-45 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 320 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 SMART SM00342 241 324 2.5E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4925 9e9361042c1c4cf37593f3dad9eb9510 332 Gene3D G3DSA:1.10.10.60 222 328 2.5E-27 T 31-10-2018 Y89_5625 8836328febd5f19cc222cd27a1f01129 503 Pfam PF08668 HDOD domain 17 200 3.7E-13 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD Y89_5625 8836328febd5f19cc222cd27a1f01129 503 SUPERFAMILY SSF109604 13 243 1.44E-18 T 31-10-2018 Y89_5625 8836328febd5f19cc222cd27a1f01129 503 Gene3D G3DSA:1.10.3210.10 13 253 2.9E-18 T 31-10-2018 Y89_2243 367874d381ee684f011989e795b529ac 412 Gene3D G3DSA:3.40.630.10 46 398 1.1E-113 T 31-10-2018 Y89_2243 367874d381ee684f011989e795b529ac 412 Pfam PF07687 Peptidase dimerisation domain 209 309 9.1E-20 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain Y89_2243 367874d381ee684f011989e795b529ac 412 SUPERFAMILY SSF55031 212 323 2.88E-21 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Y89_2243 367874d381ee684f011989e795b529ac 412 PIRSF PIRSF037238 29 410 2.8E-102 T 31-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase Y89_2243 367874d381ee684f011989e795b529ac 412 Gene3D G3DSA:3.30.70.360 211 320 1.1E-113 T 31-10-2018 Y89_2243 367874d381ee684f011989e795b529ac 412 SUPERFAMILY SSF53187 31 409 1.69E-49 T 31-10-2018 Y89_2243 367874d381ee684f011989e795b529ac 412 Pfam PF01546 Peptidase family M20/M25/M40 107 407 5.7E-31 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 Y89_1666 733678c712744f62ef65c48d169092b5 387 Gene3D G3DSA:3.30.70.270 213 387 1.6E-55 T 31-10-2018 Y89_1666 733678c712744f62ef65c48d169092b5 387 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 386 9.8E-49 T 31-10-2018 IPR000160 GGDEF domain Y89_1666 733678c712744f62ef65c48d169092b5 387 Pfam PF00990 Diguanylate cyclase, GGDEF domain 220 384 5.2E-49 T 31-10-2018 IPR000160 GGDEF domain Y89_1666 733678c712744f62ef65c48d169092b5 387 SUPERFAMILY SSF55073 225 386 2.04E-44 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1666 733678c712744f62ef65c48d169092b5 387 SMART SM00267 209 387 7.5E-57 T 31-10-2018 IPR000160 GGDEF domain Y89_6397 1f582fbfd1ad4580d92306d4182f31fa 980 SUPERFAMILY SSF52540 492 906 2.34E-34 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6397 1f582fbfd1ad4580d92306d4182f31fa 980 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 73 348 3.0E-68 T 31-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Y89_6397 1f582fbfd1ad4580d92306d4182f31fa 980 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 62 961 0.0 T 31-10-2018 IPR022303 Conjugative transfer ATPase Y89_6397 1f582fbfd1ad4580d92306d4182f31fa 980 Pfam PF01580 FtsK/SpoIIIE family 539 573 1.7E-5 T 31-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Y89_0219 bd58c4d4041eb5a0b6aaf7c4535f5e72 268 Gene3D G3DSA:3.90.226.10 13 242 5.1E-21 T 31-10-2018 Y89_0219 bd58c4d4041eb5a0b6aaf7c4535f5e72 268 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 9 268 8.6E-100 T 31-10-2018 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 Y89_0219 bd58c4d4041eb5a0b6aaf7c4535f5e72 268 SUPERFAMILY SSF52096 22 238 1.63E-18 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_0219 bd58c4d4041eb5a0b6aaf7c4535f5e72 268 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 11 268 1.3E-100 T 31-10-2018 Y89_4148 c1c1817dc612b22a1d22826bca3c5ecf 315 Pfam PF05726 Pirin C-terminal cupin domain 191 288 3.4E-23 T 31-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y89_4148 c1c1817dc612b22a1d22826bca3c5ecf 315 Gene3D G3DSA:2.60.120.10 19 264 4.4E-63 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4148 c1c1817dc612b22a1d22826bca3c5ecf 315 SUPERFAMILY SSF51182 25 297 5.44E-70 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4148 c1c1817dc612b22a1d22826bca3c5ecf 315 Pfam PF02678 Pirin 40 139 1.8E-30 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y89_4148 c1c1817dc612b22a1d22826bca3c5ecf 315 PIRSF PIRSF006232 19 300 2.8E-81 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y89_2674 37032bb03f0adc1680de42210b304a91 455 Gene3D G3DSA:3.90.380.10 23 395 1.3E-107 T 31-10-2018 Y89_2674 37032bb03f0adc1680de42210b304a91 455 Gene3D G3DSA:2.102.10.10 45 172 1.3E-107 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 148 174 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 1.4E-45 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 88 111 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 9 438 6.8E-261 T 31-10-2018 IPR017639 Benzoate 1,2-dioxygenase, large subunit Y89_2674 37032bb03f0adc1680de42210b304a91 455 SUPERFAMILY SSF55961 164 445 4.08E-71 T 31-10-2018 Y89_2674 37032bb03f0adc1680de42210b304a91 455 SUPERFAMILY SSF50022 11 164 8.64E-44 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 196 385 4.3E-18 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_2674 37032bb03f0adc1680de42210b304a91 455 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 2.0E-20 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_1007 909c4e093bf9b478a653a1dc397889fd 213 SUPERFAMILY SSF51735 5 198 4.09E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1007 909c4e093bf9b478a653a1dc397889fd 213 Pfam PF08732 HIM1 57 156 3.3E-7 T 31-10-2018 IPR014843 Protein Him1/Fmp52 Y89_1007 909c4e093bf9b478a653a1dc397889fd 213 Gene3D G3DSA:3.40.50.720 1 213 2.7E-61 T 31-10-2018 Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 Gene3D G3DSA:1.25.40.10 115 221 1.2E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 Pfam PF08238 Sel1 repeat 59 92 4.5E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 Pfam PF08238 Sel1 repeat 166 197 0.0066 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 Pfam PF08238 Sel1 repeat 145 164 12.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 Gene3D G3DSA:1.25.40.10 43 114 6.3E-15 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SUPERFAMILY SSF81901 21 139 3.01E-19 T 31-10-2018 Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SUPERFAMILY SSF81901 118 205 1.57E-14 T 31-10-2018 Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SMART SM00671 132 164 15.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SMART SM00671 96 131 230.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SMART SM00671 58 95 0.023 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5759 48f41b92f16af4ecb3c0b36966bc4215 273 SMART SM00671 165 197 0.012 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 Pfam PF03466 LysR substrate binding domain 87 289 4.9E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 SUPERFAMILY SSF46785 1 86 4.54E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.4E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 Gene3D G3DSA:1.10.10.10 1 84 4.5E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 Gene3D G3DSA:3.40.190.290 91 290 1.7E-32 T 31-10-2018 Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 SUPERFAMILY SSF53850 88 291 1.04E-33 T 31-10-2018 Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5865 db63cecf51398d850035983c6dc0a6c0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.1E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2169 0bcf990c53f9e15b87848697cfe5c325 376 PIRSF PIRSF015557 1 376 1.1E-170 T 31-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y89_2169 0bcf990c53f9e15b87848697cfe5c325 376 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 4 372 3.5E-152 T 31-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y89_2169 0bcf990c53f9e15b87848697cfe5c325 376 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 4 372 2.0E-161 T 31-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Y89_2767 0177cfac6225efac6d71bf95ee719de4 724 Pfam PF04632 Fusaric acid resistance protein family 19 699 2.1E-152 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_2091 a049c5cbb07becd695230578af9845a9 196 SUPERFAMILY SSF48498 81 196 6.81E-29 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2091 a049c5cbb07becd695230578af9845a9 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 8.8E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2091 a049c5cbb07becd695230578af9845a9 196 Gene3D G3DSA:1.10.10.60 1 69 2.2E-28 T 31-10-2018 Y89_2091 a049c5cbb07becd695230578af9845a9 196 SUPERFAMILY SSF46689 2 85 1.9E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2091 a049c5cbb07becd695230578af9845a9 196 Gene3D G3DSA:1.10.357.10 74 196 3.6E-33 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 156 464 4.6E-25 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.50.50.60 263 405 4.4E-44 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 SUPERFAMILY SSF46548 15 165 9.94E-39 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 14 477 5.7E-238 T 31-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:3.40.50.720 153 262 2.7E-18 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 32 142 6.5E-38 T 31-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 297 311 7.9E-36 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 156 178 7.9E-36 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 331 344 7.9E-36 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 179 192 7.9E-36 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 PRINTS PR00419 Adrenodoxin reductase family signature 221 231 7.9E-36 T 31-10-2018 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 Gene3D G3DSA:1.10.1060.10 17 152 8.9E-34 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_5707 9dc9a8a68d4f1bf148ea0b06cf94b147 477 SUPERFAMILY SSF51971 153 406 2.0E-70 T 31-10-2018 Y89_1581 2261e3df34201f6109a9f5968da033bc 256 SUPERFAMILY SSF52096 3 252 1.53E-68 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1581 2261e3df34201f6109a9f5968da033bc 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_1581 2261e3df34201f6109a9f5968da033bc 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 246 9.3E-41 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_1581 2261e3df34201f6109a9f5968da033bc 256 Gene3D G3DSA:3.90.226.10 1 198 3.9E-73 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 SUPERFAMILY SSF51905 4 407 3.71E-62 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 PIRSF PIRSF000171 1 561 1.1E-233 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 541 4.5E-13 T 31-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 Pfam PF00890 FAD binding domain 9 378 6.7E-37 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 Gene3D G3DSA:3.50.50.90 321 555 2.0E-49 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 Gene3D G3DSA:3.50.50.90 1 277 1.1E-77 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.7E-10 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.7E-10 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 SUPERFAMILY SSF46977 425 552 3.14E-37 T 31-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 2.8E-6 T 31-10-2018 Y89_2956 68c3a7e00f2f277555ca7b9d7c0bd960 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 2.8E-6 T 31-10-2018 Y89_0414 6971bcb467b7252e21bcd3ff4975aa9f 56 SUPERFAMILY SSF69786 1 49 2.75E-14 T 31-10-2018 IPR036591 YggU-like superfamily Y89_0414 6971bcb467b7252e21bcd3ff4975aa9f 56 Gene3D G3DSA:3.30.1200.10 1 54 2.5E-14 T 31-10-2018 IPR036591 YggU-like superfamily Y89_0414 6971bcb467b7252e21bcd3ff4975aa9f 56 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 1 39 2.9E-13 T 31-10-2018 IPR003746 Protein of unknown function DUF167 Y89_0414 6971bcb467b7252e21bcd3ff4975aa9f 56 SMART SM01152 1 41 2.9E-4 T 31-10-2018 IPR003746 Protein of unknown function DUF167 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 Pfam PF01799 [2Fe-2S] binding domain 75 147 2.5E-27 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 SUPERFAMILY SSF54292 6 90 7.6E-25 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 Gene3D G3DSA:1.10.150.120 77 163 6.6E-29 T 31-10-2018 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 SUPERFAMILY SSF47741 86 156 1.01E-29 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 55 2.8E-6 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_3733 afbd09a4b39e63b8f142748a9bbd2fd6 163 Gene3D G3DSA:3.10.20.30 2 76 4.5E-27 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2595 40363c90e9243b15646c4c5e91a2a949 356 SUPERFAMILY SSF56645 5 83 1.31E-7 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2595 40363c90e9243b15646c4c5e91a2a949 356 SUPERFAMILY SSF47203 194 328 1.1E-25 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2595 40363c90e9243b15646c4c5e91a2a949 356 Gene3D G3DSA:1.10.540.10 1 96 2.5E-9 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2595 40363c90e9243b15646c4c5e91a2a949 356 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 196 306 2.0E-14 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2595 40363c90e9243b15646c4c5e91a2a949 356 Gene3D G3DSA:1.20.140.10 194 330 4.1E-24 T 31-10-2018 Y89_4986 ec0684288f951613d550dd289e385ec1 537 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 456 4.5E-98 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_4986 ec0684288f951613d550dd289e385ec1 537 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 80 102 - T 31-10-2018 IPR023765 Solute-binding protein family 5, conserved site Y89_4986 ec0684288f951613d550dd289e385ec1 537 Gene3D G3DSA:3.40.190.10 212 524 1.3E-165 T 31-10-2018 Y89_4986 ec0684288f951613d550dd289e385ec1 537 Gene3D G3DSA:3.90.76.10 45 211 1.3E-165 T 31-10-2018 Y89_4986 ec0684288f951613d550dd289e385ec1 537 SUPERFAMILY SSF53850 32 532 1.35E-146 T 31-10-2018 Y89_4986 ec0684288f951613d550dd289e385ec1 537 Gene3D G3DSA:3.10.105.10 294 511 1.3E-165 T 31-10-2018 Y89_4986 ec0684288f951613d550dd289e385ec1 537 PIRSF PIRSF002741 22 533 2.1E-116 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_4385 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 144 7.2E-30 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Y89_4385 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 4 144 31.485 T 31-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 Y89_4385 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 Gene3D G3DSA:3.30.420.270 58 136 2.7E-16 T 31-10-2018 Y89_4385 41c5d0e24ee9ae85e47a7c5ace7aa5af 146 TIGRFAM TIGR02801 tolR: protein TolR 11 144 2.4E-46 T 31-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 Y89_3473 87045522df779006c5e7846076b0bf5a 385 SUPERFAMILY SSF54631 232 374 4.11E-34 T 31-10-2018 Y89_3473 87045522df779006c5e7846076b0bf5a 385 SMART SM00116 251 299 2.0E-7 T 31-10-2018 IPR000644 CBS domain Y89_3473 87045522df779006c5e7846076b0bf5a 385 SMART SM00116 323 371 2.0E-11 T 31-10-2018 IPR000644 CBS domain Y89_3473 87045522df779006c5e7846076b0bf5a 385 Gene3D G3DSA:3.10.580.10 225 308 5.8E-17 T 31-10-2018 Y89_3473 87045522df779006c5e7846076b0bf5a 385 Gene3D G3DSA:3.10.580.10 309 384 1.2E-15 T 31-10-2018 Y89_3473 87045522df779006c5e7846076b0bf5a 385 Pfam PF04982 HPP family 58 176 3.3E-30 T 31-10-2018 IPR007065 HPP Y89_3473 87045522df779006c5e7846076b0bf5a 385 Pfam PF00571 CBS domain 245 297 9.4E-11 T 31-10-2018 IPR000644 CBS domain Y89_3473 87045522df779006c5e7846076b0bf5a 385 Pfam PF00571 CBS domain 318 370 2.0E-12 T 31-10-2018 IPR000644 CBS domain Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Gene3D G3DSA:2.40.30.10 152 253 5.0E-36 T 31-10-2018 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Pfam PF00175 Oxidoreductase NAD-binding domain 264 367 3.6E-10 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Gene3D G3DSA:3.40.50.80 254 391 6.6E-30 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 SUPERFAMILY SSF46458 1 142 5.65E-38 T 31-10-2018 IPR009050 Globin-like superfamily Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Hamap MF_01252 Flavohemoprotein [hmp]. 1 391 53.627 T 31-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Gene3D G3DSA:1.10.490.10 1 146 8.7E-52 T 31-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 353 361 6.8E-9 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 6.8E-9 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 186 198 6.8E-9 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 248 257 6.8E-9 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 SUPERFAMILY SSF52343 255 388 5.63E-33 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Pfam PF00042 Globin 6 103 9.0E-9 T 31-10-2018 IPR000971 Globin GO:0020037 Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 SUPERFAMILY SSF63380 151 253 1.02E-30 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_2423 028641433929f1f3dda7d2687f7f16ed 393 Pfam PF00970 Oxidoreductase FAD-binding domain 159 253 2.6E-12 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 SUPERFAMILY SSF56059 124 311 2.83E-57 T 31-10-2018 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Gene3D G3DSA:3.30.1490.20 138 202 3.6E-116 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 TIGRFAM TIGR01380 glut_syn: glutathione synthase 4 313 9.3E-136 T 31-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Gene3D G3DSA:3.40.50.20 8 115 3.6E-116 T 31-10-2018 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 4 121 5.8E-44 T 31-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 SUPERFAMILY SSF52440 3 123 1.29E-42 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Gene3D G3DSA:3.30.470.20 116 296 3.6E-116 T 31-10-2018 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 173.709 T 31-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Y89_0430 a5832b2b11243276d3a78106caf4626c 317 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 2.2E-79 T 31-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 SMART SM00930 285 360 8.4E-13 T 31-10-2018 IPR018449 NIL domain Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 Gene3D G3DSA:3.30.70.260 267 366 2.6E-9 T 31-10-2018 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 SUPERFAMILY SSF55021 269 363 2.98E-13 T 31-10-2018 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 SUPERFAMILY SSF52540 26 260 3.64E-81 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 Gene3D G3DSA:3.40.50.300 16 266 7.3E-80 T 31-10-2018 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 Pfam PF00005 ABC transporter 42 190 1.7E-35 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 Pfam PF09383 NIL domain 288 358 1.0E-11 T 31-10-2018 IPR018449 NIL domain Y89_2850 3f446dd8975cb60fc6d7cd64bedb33e3 366 SMART SM00382 51 238 1.6E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1241 1317 2.5E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1159 1233 2.8E-12 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 164 244 3.5E-9 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1897 1974 1.2E-11 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1487 1563 1.5E-15 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1651 1727 2.2E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 503 579 7.1E-19 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1323 1399 1.3E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 749 824 4.0E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1077 1152 2.8E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 419 497 4.6E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 831 907 1.5E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 913 988 6.2E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 334 416 2.4E-7 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 995 1069 1.7E-15 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 585 660 2.8E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 667 743 8.5E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1733 1808 1.2E-14 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1815 1890 1.4E-14 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1405 1480 4.9E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 246 330 2.4E-6 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 Gene3D G3DSA:2.60.40.10 1569 1644 5.6E-18 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3451 23b0111a50070799e7619e9fb5d5c28c 2468 SUPERFAMILY SSF51120 2271 2459 8.89E-11 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 Gene3D G3DSA:3.30.1330.10 1 144 3.0E-48 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 PIRSF PIRSF005303 1 317 2.3E-77 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 317 26.806 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 317 3.1E-94 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 Gene3D G3DSA:3.90.650.10 145 318 6.4E-45 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 138 3.2E-24 T 31-10-2018 IPR016188 PurM-like, N-terminal domain Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 SUPERFAMILY SSF55326 1 138 2.09E-34 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 SUPERFAMILY SSF56042 143 301 1.3E-34 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Y89_0973 26e6be65326a6a3dd693d0c13363f61a 322 Pfam PF02769 AIR synthase related protein, C-terminal domain 150 297 6.5E-6 T 31-10-2018 IPR010918 PurM-like, C-terminal domain Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 Gene3D G3DSA:1.25.40.10 40 261 6.8E-32 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SUPERFAMILY SSF81901 135 261 6.93E-13 T 31-10-2018 Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SUPERFAMILY SSF81901 41 158 3.4E-19 T 31-10-2018 Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 Pfam PF08238 Sel1 repeat 78 112 2.9E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 Pfam PF08238 Sel1 repeat 185 215 76.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SMART SM00671 77 114 0.012 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SMART SM00671 151 183 96.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SMART SM00671 184 216 6.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5758 19c2e7764b5c5169a07d83be5071145a 292 SMART SM00671 115 150 310.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 9.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 9.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 9.0E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 Gene3D G3DSA:3.40.50.720 1 252 8.9E-67 T 31-10-2018 Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.3E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 250 9.3E-48 T 31-10-2018 Y89_2677 67a9fd3fde295544dec5890f493c72e9 253 SUPERFAMILY SSF51735 7 250 5.03E-66 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6279 dcaa014d7a309e0e8becbff87ebe765b 298 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 6 294 32.589 T 31-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Y89_6279 dcaa014d7a309e0e8becbff87ebe765b 298 Pfam PF02649 Type I GTP cyclohydrolase folE2 6 289 6.3E-68 T 31-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 Pfam PF07715 TonB-dependent Receptor Plug Domain 138 238 3.0E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 Pfam PF00593 TonB dependent receptor 344 809 1.3E-43 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 Gene3D G3DSA:3.55.50.30 28 102 5.5E-22 T 31-10-2018 Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 Gene3D G3DSA:2.170.130.10 121 243 6.0E-21 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 SUPERFAMILY SSF56935 122 813 1.83E-95 T 31-10-2018 Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 Gene3D G3DSA:2.40.170.20 274 812 6.4E-63 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 SMART SM00965 53 104 2.4E-13 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3984 754a3cc64f5da06da83572e2a80b307d 813 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 139 794 1.8E-103 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:3.30.450.40 5 176 1.0E-18 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:3.40.50.300 181 364 2.0E-65 T 31-10-2018 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:1.10.10.60 464 517 3.1E-9 T 31-10-2018 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF55781 24 172 1.22E-16 T 31-10-2018 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 280 295 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Gene3D G3DSA:1.10.8.60 365 429 2.1E-18 T 31-10-2018 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF02954 Bacterial regulatory protein, Fis family 479 509 5.7E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF46689 464 516 2.42E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF00158 Sigma-54 interaction domain 194 360 4.6E-69 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 218 231 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 SMART SM00382 214 357 1.6E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 407 416 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 SMART SM00065 22 170 1.5E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 SUPERFAMILY SSF52540 193 429 1.25E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2422 32639089fa20c77dd1357acb153c3ca3 517 Pfam PF01590 GAF domain 25 159 2.5E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_5298 89e6394f85bed0c70c6631416d5d5bfc 335 Gene3D G3DSA:3.40.190.10 32 304 1.2E-100 T 31-10-2018 Y89_5298 89e6394f85bed0c70c6631416d5d5bfc 335 SUPERFAMILY SSF53850 27 323 1.34E-72 T 31-10-2018 Y89_5298 89e6394f85bed0c70c6631416d5d5bfc 335 Gene3D G3DSA:3.40.190.10 127 315 1.2E-100 T 31-10-2018 Y89_5298 89e6394f85bed0c70c6631416d5d5bfc 335 PIRSF PIRSF002825 12 334 1.3E-82 T 31-10-2018 IPR026045 Ferric binding protein Y89_5298 89e6394f85bed0c70c6631416d5d5bfc 335 Pfam PF13343 Bacterial extracellular solute-binding protein 81 313 1.2E-27 T 31-10-2018 Y89_5522 d22432bf89785330dd5b954688982907 107 Gene3D G3DSA:1.10.10.60 14 106 3.3E-26 T 31-10-2018 Y89_5522 d22432bf89785330dd5b954688982907 107 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 87 107 2.2E-10 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5522 d22432bf89785330dd5b954688982907 107 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 70 87 2.2E-10 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5522 d22432bf89785330dd5b954688982907 107 SUPERFAMILY SSF46689 24 106 8.96E-23 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5522 d22432bf89785330dd5b954688982907 107 Pfam PF02954 Bacterial regulatory protein, Fis family 66 104 8.5E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_5522 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 66 78 7.6E-12 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y89_5522 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 35 51 7.6E-12 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y89_5522 d22432bf89785330dd5b954688982907 107 PRINTS PR01591 DNA-binding protein FIS signature 51 66 7.6E-12 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y89_5522 d22432bf89785330dd5b954688982907 107 PIRSF PIRSF002097 9 107 7.1E-42 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 Gene3D G3DSA:3.40.50.170 5 216 3.8E-87 T 31-10-2018 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 137 160 - T 31-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 SUPERFAMILY SSF53328 6 204 1.57E-66 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 Pfam PF00551 Formyl transferase 6 184 3.6E-66 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 6 194 6.7E-78 T 31-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Y89_4414 8eb229a9c4a7c82e43a53aedafa5b412 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 6 191 32.596 T 31-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 PIRSF PIRSF001373 2 517 3.8E-217 T 31-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 SUPERFAMILY SSF56322 29 506 4.45E-138 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 Pfam PF00425 chorismate binding enzyme 239 498 3.9E-82 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_4356 026c7dc85fe4dfc226408794e112a846 523 Pfam PF04715 Anthranilate synthase component I, N terminal region 44 187 4.7E-6 T 31-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 PRINTS PR00095 Anthranilate synthase component I signature 346 359 8.5E-20 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 PRINTS PR00095 Anthranilate synthase component I signature 360 373 8.5E-20 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 PRINTS PR00095 Anthranilate synthase component I signature 440 454 8.5E-20 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 PRINTS PR00095 Anthranilate synthase component I signature 455 469 8.5E-20 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 30 509 3.4E-173 T 31-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4356 026c7dc85fe4dfc226408794e112a846 523 Gene3D G3DSA:3.60.120.10 8 515 9.3E-154 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_5091 39def218381383c94c80187ee8e9a16b 318 Pfam PF00437 Type II/IV secretion system protein 68 265 8.5E-24 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_5091 39def218381383c94c80187ee8e9a16b 318 Gene3D G3DSA:3.40.50.300 93 315 5.2E-46 T 31-10-2018 Y89_5091 39def218381383c94c80187ee8e9a16b 318 SUPERFAMILY SSF52540 60 297 4.03E-20 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4554 5c235f4510baf0b18b1f5510b0d2e392 146 Gene3D G3DSA:3.30.720.110 88 145 3.6E-18 T 31-10-2018 Y89_4554 5c235f4510baf0b18b1f5510b0d2e392 146 SUPERFAMILY SSF54593 15 145 5.5E-23 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4554 5c235f4510baf0b18b1f5510b0d2e392 146 Gene3D G3DSA:3.30.720.120 9 77 9.8E-17 T 31-10-2018 Y89_4554 5c235f4510baf0b18b1f5510b0d2e392 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 138 2.0E-6 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_4585 776c6567f5fc3ebed3ded96b0f66c1a4 248 Gene3D G3DSA:3.20.20.70 1 248 2.4E-111 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4585 776c6567f5fc3ebed3ded96b0f66c1a4 248 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 9 241 8.9E-102 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y89_4585 776c6567f5fc3ebed3ded96b0f66c1a4 248 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 9 242 1.4E-96 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y89_4585 776c6567f5fc3ebed3ded96b0f66c1a4 248 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 246 127.795 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y89_4585 776c6567f5fc3ebed3ded96b0f66c1a4 248 SUPERFAMILY SSF63892 7 242 6.15E-97 T 31-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 SMART SM00331 174 391 7.9E-12 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 Pfam PF00072 Response regulator receiver domain 9 110 1.5E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 Gene3D G3DSA:3.60.40.10 143 394 2.5E-61 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 Gene3D G3DSA:3.40.50.2300 2 142 1.1E-36 T 31-10-2018 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 SMART SM00448 6 118 2.1E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 201 391 5.3E-31 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_2231 6f16b957dc1876875755830ad2bf58ef 394 SUPERFAMILY SSF52172 7 149 5.98E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2993 0af5f1ddf07d68cca532df7363392e6e 316 Gene3D G3DSA:3.40.1190.20 4 308 1.1E-84 T 31-10-2018 IPR029056 Ribokinase-like Y89_2993 0af5f1ddf07d68cca532df7363392e6e 316 SUPERFAMILY SSF53613 2 309 7.02E-80 T 31-10-2018 IPR029056 Ribokinase-like Y89_2993 0af5f1ddf07d68cca532df7363392e6e 316 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Y89_2993 0af5f1ddf07d68cca532df7363392e6e 316 Pfam PF00294 pfkB family carbohydrate kinase 5 303 6.8E-59 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 188 310 9.3E-26 T 31-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 SUPERFAMILY SSF48179 188 311 5.1E-28 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 8 157 6.5E-38 T 31-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 Gene3D G3DSA:3.40.50.720 5 186 4.5E-46 T 31-10-2018 Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 Gene3D G3DSA:1.10.1040.10 188 314 1.7E-37 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 7 313 1.5E-85 T 31-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Y89_3580 1c6150e58a284cd68e89bee37d2f41f0 315 SUPERFAMILY SSF51735 7 162 3.47E-13 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1023 f50114414d0c89f8954bf2a3903906f5 336 Gene3D G3DSA:1.10.8.350 43 211 8.6E-124 T 31-10-2018 Y89_1023 f50114414d0c89f8954bf2a3903906f5 336 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 40 328 6.3E-119 T 31-10-2018 IPR011757 Lytic transglycosylase MltB Y89_1023 f50114414d0c89f8954bf2a3903906f5 336 Pfam PF13406 Transglycosylase SLT domain 36 326 1.5E-101 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 Y89_1023 f50114414d0c89f8954bf2a3903906f5 336 SUPERFAMILY SSF53955 26 330 4.87E-96 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_1023 f50114414d0c89f8954bf2a3903906f5 336 Gene3D G3DSA:1.10.530.10 77 326 8.6E-124 T 31-10-2018 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 317 9.5E-8 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 301 9.5E-8 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 Pfam PF14525 AraC-binding-like domain 26 199 5.2E-14 T 31-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 SMART SM00342 232 317 1.8E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 SUPERFAMILY SSF46689 267 318 7.94E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 Pfam PF12833 Helix-turn-helix domain 238 319 3.0E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 Gene3D G3DSA:1.10.10.60 211 319 7.5E-34 T 31-10-2018 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 SUPERFAMILY SSF46689 216 265 2.42E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0930 2dc50d8bb9ef5819cc4795aab33523dd 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 313 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 Gene3D G3DSA:1.10.3930.10 72 156 7.2E-167 T 31-10-2018 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 Pfam PF02274 Amidinotransferase 22 413 1.9E-118 T 31-10-2018 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 Gene3D G3DSA:3.75.10.10 10 413 7.2E-167 T 31-10-2018 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 Hamap MF_00242 Arginine deiminase [arcA]. 5 416 49.544 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 SUPERFAMILY SSF55909 7 416 1.54E-143 T 31-10-2018 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 352 369 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 6 26 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 157 175 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 372 386 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 185 200 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PRINTS PR01466 Bacterial arginine deiminase signature 395 413 3.6E-52 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 TIGRFAM TIGR01078 arcA: arginine deiminase 10 416 4.7E-178 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_5857 c733b34a75dffbca6d9bbe47ad38ee9b 418 PIRSF PIRSF006356 1 416 3.2E-148 T 31-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 Pfam PF03466 LysR substrate binding domain 109 306 1.1E-19 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 80 4.9E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 Gene3D G3DSA:3.40.190.10 176 276 8.8E-39 T 31-10-2018 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 SUPERFAMILY SSF53850 109 307 2.71E-25 T 31-10-2018 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 Gene3D G3DSA:3.40.190.10 116 302 8.8E-39 T 31-10-2018 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 SUPERFAMILY SSF46785 17 98 8.61E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 Gene3D G3DSA:1.10.10.10 20 105 1.0E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 4.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 4.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2092 aec6312ae3f56cbdf932f4c47ff8a989 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 4.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 SMART SM00100 3 126 2.5E-27 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 31 47 - T 31-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 Gene3D G3DSA:1.10.10.10 143 211 1.2E-37 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 SUPERFAMILY SSF51206 12 141 1.22E-34 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 Pfam PF00325 Bacterial regulatory proteins, crp family 170 200 3.0E-14 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 SMART SM00419 164 212 6.6E-15 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 72 93 - T 31-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 186 201 3.3E-9 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 170 186 3.3E-9 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 Gene3D G3DSA:2.60.120.10 11 142 1.9E-43 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 ProSitePatterns PS00042 Crp-type HTH domain signature. 172 195 - T 31-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 Pfam PF00027 Cyclic nucleotide-binding domain 22 114 4.9E-22 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_0725 d913cf1a8f4296daab521d724340c0d0 214 SUPERFAMILY SSF46785 143 211 6.0E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6184 f930ea7a294186784772f3d912c10934 728 TIGRFAM TIGR01075 uvrD: DNA helicase II 8 726 0.0 T 31-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 Y89_6184 f930ea7a294186784772f3d912c10934 728 Gene3D G3DSA:3.40.50.300 283 638 1.9E-130 T 31-10-2018 Y89_6184 f930ea7a294186784772f3d912c10934 728 Gene3D G3DSA:1.10.10.160 116 189 3.6E-99 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily Y89_6184 f930ea7a294186784772f3d912c10934 728 Gene3D G3DSA:1.10.486.10 384 540 1.9E-130 T 31-10-2018 Y89_6184 f930ea7a294186784772f3d912c10934 728 SUPERFAMILY SSF52540 9 644 2.0E-184 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6184 f930ea7a294186784772f3d912c10934 728 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 273 6.4E-74 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Y89_6184 f930ea7a294186784772f3d912c10934 728 Gene3D G3DSA:3.40.50.300 12 275 3.6E-99 T 31-10-2018 Y89_6184 f930ea7a294186784772f3d912c10934 728 Pfam PF13361 UvrD-like helicase C-terminal domain 279 618 7.5E-76 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 363 508 2.4E-13 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:1.10.540.10 125 238 1.1E-101 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 SUPERFAMILY SSF47203 363 513 4.83E-27 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF09317 Domain of unknown function (DUF1974) 517 802 4.1E-105 T 31-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 137 236 5.5E-19 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 SUPERFAMILY SSF56645 123 358 1.16E-46 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:2.40.110.10 239 362 1.1E-101 T 31-10-2018 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Gene3D G3DSA:1.20.140.10 363 508 1.1E-101 T 31-10-2018 Y89_2214 52d4df9d1432765a7f05981dddf373f7 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 240 337 1.0E-8 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_6309 a1bf89af156543d94337ad46555302db 135 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 116 17.822 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y89_6309 a1bf89af156543d94337ad46555302db 135 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 113 6.6E-27 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y89_6309 a1bf89af156543d94337ad46555302db 135 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 31-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 Y89_6309 a1bf89af156543d94337ad46555302db 135 Pfam PF00825 Ribonuclease P 6 113 2.0E-31 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y89_6309 a1bf89af156543d94337ad46555302db 135 Gene3D G3DSA:3.30.230.10 2 119 1.2E-38 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_6309 a1bf89af156543d94337ad46555302db 135 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 16 92 4.0E-38 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Y89_6309 a1bf89af156543d94337ad46555302db 135 SUPERFAMILY SSF54211 6 115 3.54E-30 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 27 40 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 104 124 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 230 253 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 65 77 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 142 158 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PRINTS PR00996 Glutamate methyltransferase family signature 211 225 1.2E-43 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 Pfam PF01739 CheR methyltransferase, SAM binding domain 72 268 1.6E-67 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 Gene3D G3DSA:3.40.50.150 71 273 3.1E-59 T 31-10-2018 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 SMART SM00138 5 271 4.5E-95 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 Pfam PF03705 CheR methyltransferase, all-alpha domain 6 56 2.5E-13 T 31-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 SUPERFAMILY SSF47757 5 71 4.71E-15 T 31-10-2018 Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 Gene3D G3DSA:1.10.155.10 1 70 2.9E-10 T 31-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 SUPERFAMILY SSF53335 72 265 3.92E-48 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1661 0b10ba61fddaca5c0f11b388045f8bc8 274 PIRSF PIRSF000410 1 274 1.7E-75 T 31-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 SUPERFAMILY SSF55681 92 338 2.68E-82 T 31-10-2018 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 Pfam PF01409 tRNA synthetases class II core domain (F) 92 337 6.9E-109 T 31-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 337 2.4E-107 T 31-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 337 50.826 T 31-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 6.7E-28 T 31-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 Gene3D G3DSA:3.30.930.10 7 338 4.6E-123 T 31-10-2018 Y89_2304 9194027d1cbbebbe905d90106f8975fd 338 SUPERFAMILY SSF46589 13 99 1.46E-23 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Y89_1664 1b5f01e6e04daf9f8893278bffc47d6c 116 SUPERFAMILY SSF47226 3 113 4.84E-26 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1664 1b5f01e6e04daf9f8893278bffc47d6c 116 Gene3D G3DSA:1.20.120.160 1 110 5.8E-25 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_1664 1b5f01e6e04daf9f8893278bffc47d6c 116 Pfam PF01627 Hpt domain 25 100 1.6E-14 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 SMART SM00857 18 159 1.5E-53 T 31-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 Pfam PF00239 Resolvase, N terminal domain 19 159 3.2E-41 T 31-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 ProSitePatterns PS00398 Site-specific recombinases signature 2. 75 87 - T 31-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 SUPERFAMILY SSF46689 161 203 2.98E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 Gene3D G3DSA:3.40.50.1390 17 148 1.5E-41 T 31-10-2018 Y89_4694 e087a5889dc0d6c89f60655e292abfad 223 SUPERFAMILY SSF53041 17 158 3.14E-40 T 31-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Y89_2132 ec3f5878a00a4660e1d39968481947a2 264 Gene3D G3DSA:1.10.12.10 208 264 5.4E-24 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_2132 ec3f5878a00a4660e1d39968481947a2 264 Gene3D G3DSA:3.90.226.10 1 207 2.4E-63 T 31-10-2018 Y89_2132 ec3f5878a00a4660e1d39968481947a2 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 264 2.0E-52 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2132 ec3f5878a00a4660e1d39968481947a2 264 SUPERFAMILY SSF52096 5 263 1.38E-69 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_4121 f856c98da2ecc8094707c8f4e39d2d28 679 Pfam PF04632 Fusaric acid resistance protein family 24 664 2.2E-140 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_5432 106d7d935e097db67d70363e3553b0aa 289 SUPERFAMILY SSF53448 11 240 5.25E-31 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5432 106d7d935e097db67d70363e3553b0aa 289 Pfam PF00535 Glycosyl transferase family 2 13 144 2.5E-21 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_5432 106d7d935e097db67d70363e3553b0aa 289 Gene3D G3DSA:3.90.550.10 3 185 6.9E-25 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 Gene3D G3DSA:2.40.30.160 180 294 1.8E-33 T 31-10-2018 Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 Gene3D G3DSA:3.30.70.1630 101 174 9.5E-34 T 31-10-2018 Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 Gene3D G3DSA:3.30.70.1400 13 99 9.5E-34 T 31-10-2018 Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 171 235 7.3E-26 T 31-10-2018 IPR017703 YgfZ/GcvT conserved site Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 SUPERFAMILY SSF101790 228 307 1.11E-14 T 31-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Y89_4600 6c7aa6d29e5534c87a5f49c1daf1702f 314 SUPERFAMILY SSF103025 4 225 1.04E-53 T 31-10-2018 Y89_3332 8e34a874f00a42364c9881ab5fa0c121 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 31-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y89_3332 8e34a874f00a42364c9881ab5fa0c121 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 15 379 5.1E-115 T 31-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y89_3332 8e34a874f00a42364c9881ab5fa0c121 387 Gene3D G3DSA:3.40.50.1970 5 187 7.8E-56 T 31-10-2018 Y89_3332 8e34a874f00a42364c9881ab5fa0c121 387 SUPERFAMILY SSF56796 11 384 2.75E-118 T 31-10-2018 Y89_3332 8e34a874f00a42364c9881ab5fa0c121 387 Gene3D G3DSA:1.20.1090.10 191 387 1.0E-58 T 31-10-2018 Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 Gene3D G3DSA:1.20.58.460 637 773 1.2E-5 T 31-10-2018 Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 Gene3D G3DSA:3.40.50.10810 164 434 3.5E-59 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 SMART SM00487 163 356 5.9E-17 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 SUPERFAMILY SSF52540 282 658 2.85E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 Gene3D G3DSA:3.40.50.300 499 636 8.6E-35 T 31-10-2018 Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 Pfam PF00176 SNF2 family N-terminal domain 185 348 4.4E-19 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 SUPERFAMILY SSF52540 157 350 2.16E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 SMART SM00490 542 629 4.2E-19 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_0009 3d7eaadc61df1a25ed52863a9c4a18af 945 Pfam PF00271 Helicase conserved C-terminal domain 526 629 5.0E-20 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4117 26952f9457f06ef800ebb4b71310f79d 503 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 494 4.0E-107 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Y89_4117 26952f9457f06ef800ebb4b71310f79d 503 Gene3D G3DSA:1.20.1720.10 19 220 4.1E-34 T 31-10-2018 Y89_4117 26952f9457f06ef800ebb4b71310f79d 503 Pfam PF07690 Major Facilitator Superfamily 19 412 4.8E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4117 26952f9457f06ef800ebb4b71310f79d 503 SUPERFAMILY SSF103473 7 500 7.19E-60 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4908 d23a2dd63695431d8c931cd4ceeae15d 97 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 13 95 9.3E-24 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Y89_4908 d23a2dd63695431d8c931cd4ceeae15d 97 Pfam PF04999 Cell division protein FtsL 1 96 2.1E-32 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Y89_4908 d23a2dd63695431d8c931cd4ceeae15d 97 Hamap MF_00910 Cell division protein FtsL [ftsL]. 12 95 15.538 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 Gene3D G3DSA:3.40.309.10 266 464 1.2E-163 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 Gene3D G3DSA:3.40.605.10 23 492 1.2E-163 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 Pfam PF00171 Aldehyde dehydrogenase family 34 493 2.0E-163 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_1002 aab8fe543c093f0fc449647457aa347d 506 SUPERFAMILY SSF53720 13 497 5.89E-162 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 Gene3D G3DSA:1.25.40.20 8 118 8.2E-29 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 Pfam PF00023 Ankyrin repeat 114 145 6.0E-5 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 Gene3D G3DSA:1.25.40.960 119 170 3.7E-11 T 31-10-2018 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 48 77 3.3E-4 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 114 143 0.021 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 SMART SM00248 81 110 0.52 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 Pfam PF12796 Ankyrin repeats (3 copies) 24 109 1.9E-11 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain Y89_1724 20b2cea525bd83a631edb10adb7bcdcf 171 SUPERFAMILY SSF48403 23 167 3.59E-37 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_2852 5b93d60df05f24f8b99a3b685b2bf08d 462 PIRSF PIRSF000337 3 448 1.0E-145 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_2852 5b93d60df05f24f8b99a3b685b2bf08d 462 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 433 3.1E-168 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_2852 5b93d60df05f24f8b99a3b685b2bf08d 462 Pfam PF00296 Luciferase-like monooxygenase 26 391 6.9E-60 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_2852 5b93d60df05f24f8b99a3b685b2bf08d 462 SUPERFAMILY SSF51679 3 437 1.7E-125 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2852 5b93d60df05f24f8b99a3b685b2bf08d 462 Gene3D G3DSA:3.20.20.30 2 457 7.3E-151 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 Gene3D G3DSA:3.40.50.1820 39 312 3.6E-73 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 Pfam PF12697 Alpha/beta hydrolase family 65 298 3.0E-26 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 147 160 1.2E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 103 1.2E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 133 146 1.2E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 250 264 1.2E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00412 Epoxide hydrolase signature 88 103 2.9E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00412 Epoxide hydrolase signature 147 160 2.9E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 PRINTS PR00412 Epoxide hydrolase signature 281 303 2.9E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_2071 c75da4cc3caf7aa84b59d8786cae2709 315 SUPERFAMILY SSF53474 37 304 7.12E-64 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 Pfam PF13411 MerR HTH family regulatory protein 1 68 2.6E-15 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 SMART SM00422 1 69 3.0E-20 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 6.7E-5 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 6.7E-5 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 6.7E-5 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 SUPERFAMILY SSF46955 1 111 1.61E-24 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_2369 9910e123545e4f8ced106a58e8d425e0 162 Gene3D G3DSA:1.10.1660.10 1 123 1.3E-24 T 31-10-2018 Y89_6000 d61de1ed3fb6685ef6d94b0ba211e57c 327 Gene3D G3DSA:3.20.20.30 3 321 3.4E-105 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_6000 d61de1ed3fb6685ef6d94b0ba211e57c 327 SUPERFAMILY SSF51679 22 319 5.23E-64 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_6000 d61de1ed3fb6685ef6d94b0ba211e57c 327 Pfam PF00296 Luciferase-like monooxygenase 41 238 1.1E-42 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_6000 d61de1ed3fb6685ef6d94b0ba211e57c 327 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 14 318 1.2E-132 T 31-10-2018 IPR020020 Luciferase-type oxidoreductase Y89_3425 b77f96a7cc791472ef2a689dda85f26e 162 SUPERFAMILY SSF54427 20 149 4.88E-25 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3425 b77f96a7cc791472ef2a689dda85f26e 162 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 15 162 4.0E-84 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_3425 b77f96a7cc791472ef2a689dda85f26e 162 Gene3D G3DSA:3.10.450.50 12 152 1.0E-45 T 31-10-2018 Y89_3425 b77f96a7cc791472ef2a689dda85f26e 162 Pfam PF03284 Phenazine biosynthesis protein A/B 10 162 1.8E-88 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 49 742 2.5E-91 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 Pfam PF00593 TonB dependent receptor 272 740 9.2E-31 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 SUPERFAMILY SSF56935 35 742 1.79E-93 T 31-10-2018 Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 Gene3D G3DSA:2.170.130.10 29 155 9.4E-24 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 Gene3D G3DSA:2.40.170.20 169 742 1.1E-51 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_5286 c07bf880edc0762ff8ddcb35b8f42569 742 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 150 2.2E-19 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 Gene3D G3DSA:3.40.50.2300 1 155 2.2E-35 T 31-10-2018 Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 Pfam PF00990 Diguanylate cyclase, GGDEF domain 172 333 9.9E-50 T 31-10-2018 IPR000160 GGDEF domain Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 SUPERFAMILY SSF52172 19 151 1.01E-29 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 SMART SM00448 19 133 3.6E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 SUPERFAMILY SSF55073 176 336 4.39E-49 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 Gene3D G3DSA:3.30.70.270 156 339 1.9E-62 T 31-10-2018 Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 Pfam PF00072 Response regulator receiver domain 21 133 3.6E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 167 335 3.8E-52 T 31-10-2018 IPR000160 GGDEF domain Y89_1324 d4e0a1be1dd767b04702d1762cf6a567 347 SMART SM00267 160 337 1.5E-60 T 31-10-2018 IPR000160 GGDEF domain Y89_1225 c5514da5fcde3ed43c64d3a8877a3ec2 214 PIRSF PIRSF006170 2 214 1.5E-68 T 31-10-2018 IPR026039 Uncharacterised protein family UPF0070 Y89_1225 c5514da5fcde3ed43c64d3a8877a3ec2 214 SUPERFAMILY SSF48452 99 196 4.18E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1225 c5514da5fcde3ed43c64d3a8877a3ec2 214 Pfam PF09976 Tetratricopeptide repeat-like domain 14 210 1.3E-61 T 31-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 Y89_1225 c5514da5fcde3ed43c64d3a8877a3ec2 214 Gene3D G3DSA:1.25.40.10 30 204 2.1E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0586 f43ca2954e415b463fda48c735d09799 112 SUPERFAMILY SSF69118 5 111 1.13E-29 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0586 f43ca2954e415b463fda48c735d09799 112 Gene3D G3DSA:1.20.1290.10 1 112 3.1E-30 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0586 f43ca2954e415b463fda48c735d09799 112 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 40 90 1.5E-19 T 31-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_0586 f43ca2954e415b463fda48c735d09799 112 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 1.4E-19 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 Gene3D G3DSA:3.30.9.10 73 387 1.8E-175 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.5E-32 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.5E-32 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 1.5E-32 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.5E-32 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.5E-32 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 Gene3D G3DSA:3.50.50.60 3 351 1.8E-175 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 SUPERFAMILY SSF51905 1 389 9.72E-59 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 SUPERFAMILY SSF54373 175 275 2.47E-46 T 31-10-2018 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 Pfam PF01494 FAD binding domain 2 343 2.5E-98 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 Y89_0254 55361c8d91a85a9d51ec9b40d165e460 394 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 390 7.4E-222 T 31-10-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 Gene3D G3DSA:3.30.160.390 1 99 7.2E-29 T 31-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 Gene3D G3DSA:1.10.443.10 210 399 2.4E-16 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 SUPERFAMILY SSF56349 98 398 2.44E-55 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 Pfam PF13356 Arm DNA-binding domain 3 85 1.5E-17 T 31-10-2018 IPR025166 Integrase, DNA-binding domain Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 Gene3D G3DSA:1.10.150.130 100 207 7.5E-24 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_2505 4273283d8fcab1c14607d4b3dee9a3d9 456 Pfam PF00589 Phage integrase family 210 388 8.6E-22 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_3587 9187a8dbf97b49855c67dfae58ffd218 162 Gene3D G3DSA:1.25.40.10 15 157 1.4E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4070 aea13a01ef48eb1aedc67faa2c31e431 194 SMART SM00855 4 153 5.4E-15 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_4070 aea13a01ef48eb1aedc67faa2c31e431 194 SUPERFAMILY SSF53254 2 188 3.0E-48 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_4070 aea13a01ef48eb1aedc67faa2c31e431 194 PIRSF PIRSF000709 6 189 0.0035 T 31-10-2018 Y89_4070 aea13a01ef48eb1aedc67faa2c31e431 194 Gene3D G3DSA:3.40.50.1240 2 191 2.6E-46 T 31-10-2018 IPR029033 Histidine phosphatase superfamily Y89_4070 aea13a01ef48eb1aedc67faa2c31e431 194 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 184 6.4E-43 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Y89_5822 46575be49be3b252d5714d477aa7887d 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.7E-41 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y89_5822 46575be49be3b252d5714d477aa7887d 90 SUPERFAMILY SSF111148 1 89 2.62E-41 T 31-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Y89_5822 46575be49be3b252d5714d477aa7887d 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 74 2.0E-39 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y89_5822 46575be49be3b252d5714d477aa7887d 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.539 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y89_5822 46575be49be3b252d5714d477aa7887d 90 Gene3D G3DSA:1.10.3880.10 1 90 4.7E-42 T 31-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Y89_5822 46575be49be3b252d5714d477aa7887d 90 PIRSF PIRSF029827 1 90 9.1E-41 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 242 261 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 77 95 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 224 241 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 39 57 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 116 138 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 262 282 3.9E-20 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 Gene3D G3DSA:3.30.1330.60 167 288 3.4E-30 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 Gene3D G3DSA:2.60.40.2540 17 166 3.6E-32 T 31-10-2018 Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 SUPERFAMILY SSF103088 149 278 5.89E-30 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_1501 a2402e4c9b8f51848f4fba8bc0de3376 321 Pfam PF00691 OmpA family 178 273 7.4E-19 T 31-10-2018 IPR006665 OmpA-like domain Y89_4373 19de9b88b7cddfbefb0751da8d6b0e5a 95 Pfam PF01527 Transposase 4 71 1.1E-16 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_4373 19de9b88b7cddfbefb0751da8d6b0e5a 95 SUPERFAMILY SSF46689 1 86 2.15E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4373 19de9b88b7cddfbefb0751da8d6b0e5a 95 Gene3D G3DSA:1.10.10.60 7 89 9.8E-11 T 31-10-2018 Y89_1175 527eeaa64bf6a9d4b9ec4d8344c8d174 334 Pfam PF04245 37-kD nucleoid-associated bacterial protein 7 326 5.4E-88 T 31-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y89_1175 527eeaa64bf6a9d4b9ec4d8344c8d174 334 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 1 332 39.909 T 31-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y89_3900 5488e12f1dd778535d8ab646900c4647 135 PIRSF PIRSF016789 14 134 5.0E-37 T 31-10-2018 IPR007401 Protein of unknown function DUF454 Y89_3900 5488e12f1dd778535d8ab646900c4647 135 Pfam PF04304 Protein of unknown function (DUF454) 15 129 5.7E-41 T 31-10-2018 IPR007401 Protein of unknown function DUF454 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 SUPERFAMILY SSF46894 191 259 9.52E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 Pfam PF00196 Bacterial regulatory proteins, luxR family 202 255 3.7E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 SMART SM00421 200 257 2.5E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 Gene3D G3DSA:1.10.10.10 159 266 4.2E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 233 4.9E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 217 4.9E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3854 6681bc2423d10d9ebc4a040936b732fd 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 233 245 4.9E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4503 32f1fb27077194a7decd2146bcac03e6 101 PIRSF PIRSF003113 1 94 2.2E-29 T 31-10-2018 IPR002634 BolA protein Y89_4503 32f1fb27077194a7decd2146bcac03e6 101 Gene3D G3DSA:3.30.300.90 1 85 1.4E-24 T 31-10-2018 Y89_4503 32f1fb27077194a7decd2146bcac03e6 101 SUPERFAMILY SSF82657 3 83 4.32E-28 T 31-10-2018 IPR036065 BolA-like superfamily Y89_4503 32f1fb27077194a7decd2146bcac03e6 101 Pfam PF01722 BolA-like protein 12 80 9.7E-24 T 31-10-2018 IPR002634 BolA protein Y89_0779 23900d192c3f73be4d006010650338a6 442 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 428 29.003 T 31-10-2018 IPR026593 Protein translocase subunit SecY Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 5.5E-90 T 31-10-2018 Y89_0779 23900d192c3f73be4d006010650338a6 442 PIRSF PIRSF004557 8 436 3.8E-119 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_0779 23900d192c3f73be4d006010650338a6 442 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 31-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_0779 23900d192c3f73be4d006010650338a6 442 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 21 424 7.8E-130 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_0779 23900d192c3f73be4d006010650338a6 442 Gene3D G3DSA:1.10.3370.10 10 424 3.2E-158 T 31-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_0779 23900d192c3f73be4d006010650338a6 442 SUPERFAMILY SSF103491 15 419 1.44E-128 T 31-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_0779 23900d192c3f73be4d006010650338a6 442 Pfam PF00344 SecY translocase 75 412 1.1E-115 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Y89_4929 3999e4332b6b541a8a6ca2e2d4a46ef1 209 SUPERFAMILY SSF53474 7 203 3.33E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4929 3999e4332b6b541a8a6ca2e2d4a46ef1 209 Gene3D G3DSA:3.40.50.1820 1 208 2.4E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4929 3999e4332b6b541a8a6ca2e2d4a46ef1 209 Pfam PF00975 Thioesterase domain 88 139 3.3E-8 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_0231 cd1103dee276e55fd33cadc32ae76590 260 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 211 1.2E-37 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_0231 cd1103dee276e55fd33cadc32ae76590 260 SUPERFAMILY SSF53639 26 243 3.53E-66 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_0231 cd1103dee276e55fd33cadc32ae76590 260 SMART SM01007 33 211 1.0E-42 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal Y89_0231 cd1103dee276e55fd33cadc32ae76590 260 Gene3D G3DSA:3.40.225.10 17 256 2.4E-54 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 Gene3D G3DSA:1.10.230.10 268 376 2.8E-148 T 31-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 SUPERFAMILY SSF48256 6 427 6.54E-170 T 31-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 Gene3D G3DSA:1.10.580.10 57 410 2.8E-148 T 31-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PIRSF PIRSF001369 37 428 3.3E-180 T 31-10-2018 IPR024176 Citrate synthase, bacterial-type Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 421 2.4E-239 T 31-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 4.7E-134 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 31-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 Gene3D G3DSA:2.20.28.60 1 50 8.2E-26 T 31-10-2018 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 379 393 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 165 178 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 219 234 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 241 269 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 296 316 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3755 4cf94dc018d59bb8e8d515eb802c7822 428 PRINTS PR00143 Citrate synthase signature 359 375 7.9E-57 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 454 6.3E-30 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 153 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.1E-63 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 8.1E-37 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 8.1E-37 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 8.1E-37 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 8.1E-37 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.1E-37 T 31-10-2018 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 2.9E-69 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 SUPERFAMILY SSF51905 6 336 1.22E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3004 5132f4203afd094702e4fe3274aefcda 464 Gene3D G3DSA:3.50.50.60 153 270 2.6E-113 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3004 5132f4203afd094702e4fe3274aefcda 464 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 464 1.5E-143 T 31-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 Gene3D G3DSA:3.50.50.60 9 331 2.6E-113 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3004 5132f4203afd094702e4fe3274aefcda 464 PIRSF PIRSF000350 2 457 1.5E-78 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 Gene3D G3DSA:3.30.390.30 344 464 1.1E-39 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_3004 5132f4203afd094702e4fe3274aefcda 464 SUPERFAMILY SSF55424 344 463 7.73E-33 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Y89_5157 a0b0537939d3acab77007eaa7de134c5 168 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 3.4E-6 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5157 a0b0537939d3acab77007eaa7de134c5 168 Gene3D G3DSA:3.55.40.10 32 168 1.9E-54 T 31-10-2018 Y89_5157 a0b0537939d3acab77007eaa7de134c5 168 SUPERFAMILY SSF54523 10 140 1.49E-17 T 31-10-2018 Y89_5157 a0b0537939d3acab77007eaa7de134c5 168 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5157 a0b0537939d3acab77007eaa7de134c5 168 Pfam PF12019 Type II transport protein GspH 45 153 1.0E-12 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 4 486 6.2E-254 T 31-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 Pfam PF00171 Aldehyde dehydrogenase family 10 461 1.0E-123 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 SUPERFAMILY SSF53720 3 456 1.83E-123 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 2 487 58.72 T 31-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 Gene3D G3DSA:3.40.605.10 8 450 2.6E-152 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_4461 99397d3e46632fff409fdfab6d6d0db0 487 Gene3D G3DSA:3.40.309.10 248 438 2.6E-152 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_2878 8e9c3f89ecaea61ae8f751627df37fef 209 Pfam PF01464 Transglycosylase SLT domain 47 154 5.6E-14 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_2878 8e9c3f89ecaea61ae8f751627df37fef 209 Gene3D G3DSA:1.10.530.10 19 192 2.9E-33 T 31-10-2018 Y89_2878 8e9c3f89ecaea61ae8f751627df37fef 209 SUPERFAMILY SSF53955 36 202 6.19E-35 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5322 cd966a33272cc6068bc442edf767c13e 764 Pfam PF00593 TonB dependent receptor 273 761 8.6E-65 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5322 cd966a33272cc6068bc442edf767c13e 764 Gene3D G3DSA:2.40.170.20 171 763 4.0E-129 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_5322 cd966a33272cc6068bc442edf767c13e 764 SUPERFAMILY SSF56935 35 760 1.62E-122 T 31-10-2018 Y89_5322 cd966a33272cc6068bc442edf767c13e 764 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 34 761 1.9E-161 T 31-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 Y89_5322 cd966a33272cc6068bc442edf767c13e 764 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 33 760 3.4E-126 T 31-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 Y89_5322 cd966a33272cc6068bc442edf767c13e 764 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 155 5.9E-28 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_5322 cd966a33272cc6068bc442edf767c13e 764 Gene3D G3DSA:2.170.130.10 33 160 1.1E-36 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 SUPERFAMILY SSF48498 98 182 4.14E-10 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 SUPERFAMILY SSF46689 28 88 9.23E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 Pfam PF08359 YsiA-like protein, C-terminal region 84 175 9.2E-6 T 31-10-2018 IPR013570 Transcription regulator YsiA, C-terminal Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 76 1.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 Gene3D G3DSA:1.10.357.10 14 210 1.3E-39 T 31-10-2018 Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 43 2.0E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2514 b114b9a8dc77dda48e3c99c3aaaa918e 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 2.0E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0904 e0dee72019f52b7813f5d751f772c6cc 189 Gene3D G3DSA:3.90.226.10 30 188 1.5E-5 T 31-10-2018 Y89_0904 e0dee72019f52b7813f5d751f772c6cc 189 SUPERFAMILY SSF52096 34 186 1.79E-10 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_6257 b334c837010e742cbe71d725b0b47e38 194 Pfam PF09335 SNARE associated Golgi protein 51 155 3.3E-8 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_5389 652d2162c406ff52b6f06736b1c42970 477 SMART SM00387 348 459 1.2E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5389 652d2162c406ff52b6f06736b1c42970 477 SUPERFAMILY SSF55874 293 461 1.15E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5389 652d2162c406ff52b6f06736b1c42970 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 303 4.4E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:1.10.287.130 190 303 1.5E-17 T 31-10-2018 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 456 7.8E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 7.8E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 7.8E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 7.8E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 SUPERFAMILY SSF47384 222 303 1.2E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 Gene3D G3DSA:3.30.565.10 304 457 2.4E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5389 652d2162c406ff52b6f06736b1c42970 477 SMART SM00388 239 304 2.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5389 652d2162c406ff52b6f06736b1c42970 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 458 1.2E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0309 5768a93b3e938cb325ca83ea27cd035b 463 Gene3D G3DSA:2.40.160.10 35 463 3.4E-188 T 31-10-2018 IPR023614 Porin domain superfamily Y89_0309 5768a93b3e938cb325ca83ea27cd035b 463 Pfam PF03573 outer membrane porin, OprD family 30 461 2.1E-152 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_1761 327567fab987e6c60e2444af0424acdc 265 SUPERFAMILY SSF161098 6 263 8.5E-43 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1761 327567fab987e6c60e2444af0424acdc 265 Gene3D G3DSA:1.10.3720.10 4 259 2.3E-38 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1761 327567fab987e6c60e2444af0424acdc 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 262 1.3E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1534 128699c7f42060ccb8f3ddceda86bb0d 198 Pfam PF00877 NlpC/P60 family 75 181 4.6E-32 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y89_1534 128699c7f42060ccb8f3ddceda86bb0d 198 SUPERFAMILY SSF54001 58 185 2.94E-43 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_1534 128699c7f42060ccb8f3ddceda86bb0d 198 Gene3D G3DSA:3.90.1720.10 16 180 8.8E-46 T 31-10-2018 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 Gene3D G3DSA:2.40.420.20 274 344 6.6E-64 T 31-10-2018 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 SUPERFAMILY SSF111369 41 269 3.01E-25 T 31-10-2018 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 Gene3D G3DSA:1.10.287.470 85 150 6.6E-64 T 31-10-2018 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 Gene3D G3DSA:2.40.30.170 39 273 6.6E-64 T 31-10-2018 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 254 1.3E-16 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 28 346 1.8E-69 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_0169 464d9182ab89876e85faf73e9ba3ebaf 367 Gene3D G3DSA:2.40.50.100 51 197 6.6E-64 T 31-10-2018 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 2.5E-149 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 SUPERFAMILY SSF53901 3 270 6.17E-91 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 Gene3D G3DSA:3.40.47.10 126 389 4.7E-157 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 PIRSF PIRSF000429 1 393 3.2E-133 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 Pfam PF02803 Thiolase, C-terminal domain 271 390 6.9E-50 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 Pfam PF00108 Thiolase, N-terminal domain 4 262 3.6E-106 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 SUPERFAMILY SSF53901 272 391 7.4E-41 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_2515 25cf9efd62f532f68fe6052c19415b3d 393 Gene3D G3DSA:3.40.47.10 6 276 4.7E-157 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5679 79994cd1c8e88959935f79661a837fe1 252 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 23 224 2.3E-70 T 31-10-2018 Y89_5679 79994cd1c8e88959935f79661a837fe1 252 PIRSF PIRSF026326 3 246 9.5E-68 T 31-10-2018 IPR027023 Putative lipopolysaccharide kinase InaA Y89_5679 79994cd1c8e88959935f79661a837fe1 252 SUPERFAMILY SSF56112 35 242 9.49E-13 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0851 2ffefc53bcc390999a93c965b5317c86 187 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 184 7.2E-66 T 31-10-2018 IPR006286 Deglycase PfpI Y89_0851 2ffefc53bcc390999a93c965b5317c86 187 SUPERFAMILY SSF52317 7 183 1.1E-43 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0851 2ffefc53bcc390999a93c965b5317c86 187 Pfam PF01965 DJ-1/PfpI family 8 180 5.3E-39 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_0851 2ffefc53bcc390999a93c965b5317c86 187 Gene3D G3DSA:3.40.50.880 1 186 3.6E-46 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 SUPERFAMILY SSF53901 7 282 1.75E-54 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 SUPERFAMILY SSF53901 302 425 2.91E-27 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 Gene3D G3DSA:3.40.47.10 1 425 3.9E-101 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 Pfam PF00108 Thiolase, N-terminal domain 7 275 7.7E-46 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 PIRSF PIRSF000429 1 425 2.6E-98 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 424 1.4E-111 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_5398 7d621cb8c024b254abd0fc28e1e40527 425 Pfam PF02803 Thiolase, C-terminal domain 302 425 5.5E-29 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_4572 9aa3fbc666f90cf45d673880747dbf90 101 Gene3D G3DSA:1.10.3730.20 1 101 9.3E-28 T 31-10-2018 Y89_4572 9aa3fbc666f90cf45d673880747dbf90 101 SUPERFAMILY SSF103481 5 100 3.4E-19 T 31-10-2018 Y89_4572 9aa3fbc666f90cf45d673880747dbf90 101 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.0E-23 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 Gene3D G3DSA:3.40.309.10 258 447 4.6E-189 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 SUPERFAMILY SSF53720 7 481 5.11E-175 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 Gene3D G3DSA:3.40.605.10 25 472 4.6E-189 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 Pfam PF00171 Aldehyde dehydrogenase family 19 477 4.4E-173 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_0283 d8cd957ef946826f56b974138e37e5bd 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 3.3E-236 T 31-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 Y89_5656 b63289237b1c6f44abe27962d3fa329b 363 Gene3D G3DSA:3.40.190.10 146 347 1.5E-109 T 31-10-2018 Y89_5656 b63289237b1c6f44abe27962d3fa329b 363 Gene3D G3DSA:3.40.190.10 46 341 1.5E-109 T 31-10-2018 Y89_5656 b63289237b1c6f44abe27962d3fa329b 363 Pfam PF13416 Bacterial extracellular solute-binding protein 63 327 2.4E-40 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_5656 b63289237b1c6f44abe27962d3fa329b 363 SUPERFAMILY SSF53850 44 360 2.93E-59 T 31-10-2018 Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 Gene3D G3DSA:3.40.190.10 176 274 3.8E-75 T 31-10-2018 Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 Pfam PF03466 LysR substrate binding domain 96 299 5.9E-25 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 SUPERFAMILY SSF46785 5 89 2.18E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 SUPERFAMILY SSF53850 92 302 1.74E-44 T 31-10-2018 Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 Gene3D G3DSA:3.40.190.10 92 294 3.8E-75 T 31-10-2018 Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 5.6E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0498 0e97c9ad1d025ed9a34366727860f8bc 308 Gene3D G3DSA:1.10.10.10 1 91 2.7E-35 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1275 e7d0a1a9fb5db39544bcc3de768da514 64 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 8.0E-19 T 31-10-2018 IPR010710 Protein of unknown function DUF1289 Y89_4088 ef8261613d9f44ba946a9ad9f1df0b54 287 SUPERFAMILY SSF47413 46 94 2.48E-5 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_4088 ef8261613d9f44ba946a9ad9f1df0b54 287 Gene3D G3DSA:3.30.450.180 121 287 5.4E-12 T 31-10-2018 Y89_4088 ef8261613d9f44ba946a9ad9f1df0b54 287 Pfam PF13560 Helix-turn-helix domain 22 101 1.1E-14 T 31-10-2018 Y89_4088 ef8261613d9f44ba946a9ad9f1df0b54 287 SMART SM00530 26 98 6.9E-5 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 SUPERFAMILY SSF52540 155 538 2.85E-16 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 Gene3D G3DSA:1.10.275.30 391 510 7.3E-35 T 31-10-2018 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 Pfam PF13307 Helicase C-terminal domain 596 756 1.2E-31 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 SUPERFAMILY SSF52540 520 739 1.98E-7 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 Pfam PF06733 DEAD_2 278 396 3.1E-11 T 31-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 SMART SM00491 609 744 2.6E-8 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 Gene3D G3DSA:3.40.50.300 562 758 3.2E-47 T 31-10-2018 Y89_3460 6b59c25e5fd824131535294d1aa1684a 758 Gene3D G3DSA:3.40.50.300 191 547 7.3E-35 T 31-10-2018 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.518 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.1E-45 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 Gene3D G3DSA:3.90.1030.10 1 117 3.2E-46 T 31-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 Pfam PF01196 Ribosomal protein L17 20 116 2.6E-33 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0785 ac0d1b6be9719a22e63bd4a16ba0b937 129 SUPERFAMILY SSF64263 1 119 5.1E-50 T 31-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0105 2ae6417fec8fb0f69d35c6238c5afc99 144 Pfam PF08786 DcrB 8 136 1.6E-34 T 31-10-2018 IPR014894 Protein DcrB Y89_0105 2ae6417fec8fb0f69d35c6238c5afc99 144 Gene3D G3DSA:3.40.1000.10 1 144 2.8E-46 T 31-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Y89_0105 2ae6417fec8fb0f69d35c6238c5afc99 144 SUPERFAMILY SSF55724 2 141 2.14E-47 T 31-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Y89_5836 0391315fdd28d29ec95037ceadf18577 341 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 12 332 4.7E-92 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Y89_5836 0391315fdd28d29ec95037ceadf18577 341 Pfam PF05125 Phage major capsid protein, P2 family 15 334 1.1E-117 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Y89_6201 c9a45f20d76639dfc5c797f216ca3e41 70 Pfam PF06568 Domain of unknown function (DUF1127) 25 60 1.2E-11 T 31-10-2018 IPR009506 Protein of unknown function DUF1127 Y89_4830 03beeacab64e950f5c0c459e288933f0 196 PIRSF PIRSF029811 1 191 3.9E-69 T 31-10-2018 IPR027016 Uncharacterised protein with YceI domain Y89_4830 03beeacab64e950f5c0c459e288933f0 196 Pfam PF04264 YceI-like domain 21 162 1.2E-12 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_4830 03beeacab64e950f5c0c459e288933f0 196 SUPERFAMILY SSF101874 19 188 5.49E-22 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_4830 03beeacab64e950f5c0c459e288933f0 196 Gene3D G3DSA:2.40.128.110 16 194 3.1E-47 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_4830 03beeacab64e950f5c0c459e288933f0 196 SMART SM00867 20 189 1.0E-18 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_2050 c4385b107294392e57d6b133159bf121 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.8E-19 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2050 c4385b107294392e57d6b133159bf121 60 Pfam PF01783 Ribosomal L32p protein family 2 56 3.4E-20 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2050 c4385b107294392e57d6b133159bf121 60 SUPERFAMILY SSF57829 2 55 9.16E-18 T 31-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Y89_2050 c4385b107294392e57d6b133159bf121 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.732 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 8 353 7.4E-152 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 SUPERFAMILY SSF53067 193 352 7.47E-27 T 31-10-2018 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.420.40 189 317 7.0E-86 T 31-10-2018 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.420.40 13 351 7.0E-86 T 31-10-2018 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 Pfam PF11104 Type IV pilus assembly protein PilM; 14 353 3.0E-139 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 Gene3D G3DSA:3.30.1490.300 88 147 7.0E-86 T 31-10-2018 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 SUPERFAMILY SSF53067 12 177 1.38E-13 T 31-10-2018 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 SMART SM00842 12 181 7.9E-5 T 31-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Y89_5716 a54a28f9eed201302b52ba8cc15f5b80 354 PIRSF PIRSF019169 1 354 9.0E-125 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 45 259 1.1E-69 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 PIRSF PIRSF002854 1 260 1.2E-106 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 SUPERFAMILY SSF53850 25 260 6.21E-86 T 31-10-2018 Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 Gene3D G3DSA:3.40.190.10 27 258 1.1E-106 T 31-10-2018 Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 Gene3D G3DSA:3.40.190.10 106 210 1.1E-106 T 31-10-2018 Y89_6245 7419b9ba0b036d246a8369ded749f3cb 260 Pfam PF03180 NLPA lipoprotein 25 260 4.4E-102 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_4164 5e2f7a3acae4fa59353d4d3d78fa2193 165 Hamap MF_00746 Protein SprT [sprT]. 3 159 36.608 T 31-10-2018 IPR023483 Uncharacterised protein family SprT Y89_4164 5e2f7a3acae4fa59353d4d3d78fa2193 165 Pfam PF17283 SprT-like zinc ribbon domain 118 159 6.5E-10 T 31-10-2018 IPR035240 SprT-like, zinc ribbon domain Y89_4164 5e2f7a3acae4fa59353d4d3d78fa2193 165 SMART SM00731 7 159 9.7E-62 T 31-10-2018 IPR006640 SprT-like Y89_4164 5e2f7a3acae4fa59353d4d3d78fa2193 165 Pfam PF10263 SprT-like family 10 111 3.6E-19 T 31-10-2018 IPR006640 SprT-like Y89_4403 67fa2c10583f99dda767408fee617883 154 Pfam PF00578 AhpC/TSA family 26 132 4.5E-18 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4403 67fa2c10583f99dda767408fee617883 154 Gene3D G3DSA:3.40.30.10 21 153 2.6E-28 T 31-10-2018 Y89_4403 67fa2c10583f99dda767408fee617883 154 SUPERFAMILY SSF52833 6 150 5.8E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4403 67fa2c10583f99dda767408fee617883 154 ProSitePatterns PS00194 Thioredoxin family active site. 43 61 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 SUPERFAMILY SSF161098 16 258 1.11E-44 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 341 504 4.3E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 248 9.0E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 SUPERFAMILY SSF161098 278 511 1.31E-31 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 Gene3D G3DSA:1.10.3720.10 20 255 2.9E-51 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5299 a276c0485eb5eda353e50cb8db55228d 520 Gene3D G3DSA:1.10.3720.10 278 518 4.8E-33 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:3.40.190.10 93 293 4.9E-51 T 31-10-2018 Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:1.10.10.10 3 92 4.8E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 SUPERFAMILY SSF53850 90 298 1.72E-40 T 31-10-2018 Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 Pfam PF03466 LysR substrate binding domain 90 295 4.8E-40 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.4E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 SUPERFAMILY SSF46785 4 87 1.41E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3363 ae18a263e6cf70d97f979f1dce9169dd 311 Gene3D G3DSA:3.40.190.10 166 267 4.9E-51 T 31-10-2018 Y89_5675 aca36800d4fdb262b77e40eab94366e6 298 Pfam PF07395 Mig-14 35 298 9.2E-144 T 31-10-2018 IPR009977 Mig-14 Y89_5675 aca36800d4fdb262b77e40eab94366e6 298 PIRSF PIRSF029703 1 298 1.4E-134 T 31-10-2018 IPR009977 Mig-14 Y89_5675 aca36800d4fdb262b77e40eab94366e6 298 SUPERFAMILY SSF55729 138 290 1.32E-17 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_6052 c3988557fcbad409a3b4d72cd3f2748d 120 Gene3D G3DSA:2.60.120.10 3 115 7.3E-28 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_6052 c3988557fcbad409a3b4d72cd3f2748d 120 Pfam PF05899 Protein of unknown function (DUF861) 41 113 3.1E-23 T 31-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_6052 c3988557fcbad409a3b4d72cd3f2748d 120 SUPERFAMILY SSF51182 16 116 1.11E-20 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 Pfam PF00106 short chain dehydrogenase 8 192 2.7E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 Gene3D G3DSA:3.40.50.720 3 231 1.8E-63 T 31-10-2018 Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.7E-28 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 SUPERFAMILY SSF51735 2 232 2.32E-57 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2579 89c96d6d5a43089d9f8f566200718a49 233 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0042 T 31-10-2018 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 Pfam PF12019 Type II transport protein GspH 42 161 3.9E-10 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 SUPERFAMILY SSF54523 7 89 4.55E-13 T 31-10-2018 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.4E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 2 16 2.9E-12 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 17 31 2.9E-12 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 PRINTS PR00885 Bacterial general secretion pathway protein H signature 128 143 2.9E-12 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 Gene3D G3DSA:3.55.40.10 35 166 1.0E-28 T 31-10-2018 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 3 149 2.1E-19 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Y89_1919 f27049841bc1d015f5f4fdf3ca35e290 172 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.1E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2650 345c0c7f5a36090a8e2f2c9d0da84508 211 Gene3D G3DSA:1.20.120.1760 9 202 9.8E-22 T 31-10-2018 Y89_2650 345c0c7f5a36090a8e2f2c9d0da84508 211 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 96 9.9E-10 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_0411 d0ac014d0a4b0140b2de5cbd2c8406da 206 Gene3D G3DSA:3.40.50.150 3 171 1.7E-27 T 31-10-2018 Y89_0411 d0ac014d0a4b0140b2de5cbd2c8406da 206 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 9.0E-92 T 31-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Y89_0411 d0ac014d0a4b0140b2de5cbd2c8406da 206 SUPERFAMILY SSF53335 3 192 7.86E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0411 d0ac014d0a4b0140b2de5cbd2c8406da 206 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 194 8.6E-91 T 31-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Y89_0189 4b9ff941a12f8c0834959ed2add950d4 161 SUPERFAMILY SSF50341 13 153 1.07E-39 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_0189 4b9ff941a12f8c0834959ed2add950d4 161 Gene3D G3DSA:2.30.30.40 17 142 1.2E-39 T 31-10-2018 Y89_0189 4b9ff941a12f8c0834959ed2add950d4 161 Pfam PF01584 CheW-like domain 15 151 2.0E-35 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0189 4b9ff941a12f8c0834959ed2add950d4 161 Gene3D G3DSA:2.40.50.180 34 143 1.2E-39 T 31-10-2018 Y89_0189 4b9ff941a12f8c0834959ed2add950d4 161 SMART SM00260 11 148 1.5E-41 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_2483 2b6413d0520d4c1ddf32e17afede4a58 131 SUPERFAMILY SSF75169 1 127 6.28E-34 T 31-10-2018 IPR027396 DsrEFH-like Y89_2483 2b6413d0520d4c1ddf32e17afede4a58 131 Pfam PF02635 DsrE/DsrF-like family 1 127 2.2E-23 T 31-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y89_2483 2b6413d0520d4c1ddf32e17afede4a58 131 Gene3D G3DSA:3.40.1260.10 1 127 1.2E-41 T 31-10-2018 IPR027396 DsrEFH-like Y89_2483 2b6413d0520d4c1ddf32e17afede4a58 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 127 1.1E-43 T 31-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 Gene3D G3DSA:2.30.42.10 222 309 3.7E-18 T 31-10-2018 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 Pfam PF13180 PDZ domain 227 289 6.8E-10 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 450 6.7E-124 T 31-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 SUPERFAMILY SSF50156 87 181 9.2E-15 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 Gene3D G3DSA:2.30.42.10 125 220 7.7E-30 T 31-10-2018 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 Pfam PF02163 Peptidase family M50 11 437 1.4E-83 T 31-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 SMART SM00228 114 186 8.4E-6 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 SMART SM00228 211 280 3.2E-8 T 31-10-2018 IPR001478 PDZ domain GO:0005515 Y89_1377 ebb3a059f094dcd04128c38bfc0a30e6 450 SUPERFAMILY SSF50156 208 290 1.97E-16 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 Y89_1549 85cf47fd7f6fdccc8755c4b577a1e30e 250 Pfam PF01925 Sulfite exporter TauE/SafE 10 241 1.2E-40 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_2057 270c20dc7bbcb7b65cb8f9081ee08670 349 Pfam PF02618 YceG-like family 43 327 3.5E-76 T 31-10-2018 IPR003770 Endolytic murein transglycosylase Y89_2057 270c20dc7bbcb7b65cb8f9081ee08670 349 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 1 334 32.156 T 31-10-2018 IPR003770 Endolytic murein transglycosylase Y89_2057 270c20dc7bbcb7b65cb8f9081ee08670 349 Gene3D G3DSA:3.30.160.60 302 337 8.7E-13 T 31-10-2018 Y89_2057 270c20dc7bbcb7b65cb8f9081ee08670 349 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 1 329 2.8E-81 T 31-10-2018 IPR003770 Endolytic murein transglycosylase Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 Pfam PF02441 Flavoprotein 7 179 7.5E-42 T 31-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 SUPERFAMILY SSF52507 1 179 2.35E-59 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 1.3E-71 T 31-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 395 3.8E-140 T 31-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 Gene3D G3DSA:3.40.50.10300 186 402 1.2E-78 T 31-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 Gene3D G3DSA:3.40.50.1950 1 185 3.6E-53 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Y89_6058 292e167d6b14531abf08cb923b2e6f44 402 SUPERFAMILY SSF102645 184 400 5.89E-76 T 31-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Pfam PF01225 Mur ligase family, catalytic domain 2 100 6.1E-19 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 SUPERFAMILY SSF53244 311 448 5.49E-34 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 360 1.1E-8 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Pfam PF08245 Mur ligase middle domain 108 291 8.4E-22 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Gene3D G3DSA:3.40.1190.10 91 313 7.5E-55 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Gene3D G3DSA:3.40.50.720 1 90 1.3E-36 T 31-10-2018 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 60.685 T 31-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 SUPERFAMILY SSF51984 1 90 1.57E-23 T 31-10-2018 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 SUPERFAMILY SSF53623 94 308 6.67E-52 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.3E-215 T 31-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Y89_1004 8846a31fdd1bbbb961ede3053ed40cc1 451 Gene3D G3DSA:3.90.190.20 314 451 4.5E-26 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Y89_3947 b81a56a1b090fa84164cfe967c1c2968 221 Gene3D G3DSA:3.40.50.150 34 216 1.9E-39 T 31-10-2018 Y89_3947 b81a56a1b090fa84164cfe967c1c2968 221 SUPERFAMILY SSF53335 46 190 4.22E-29 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3947 b81a56a1b090fa84164cfe967c1c2968 221 Pfam PF13578 Methyltransferase domain 84 187 1.6E-15 T 31-10-2018 Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 Gene3D G3DSA:2.40.420.20 54 409 1.4E-40 T 31-10-2018 Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 SUPERFAMILY SSF111369 56 124 1.96E-7 T 31-10-2018 Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 Gene3D G3DSA:1.10.287.470 100 229 1.4E-40 T 31-10-2018 Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 Gene3D G3DSA:2.40.50.100 66 274 1.4E-40 T 31-10-2018 Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 314 2.0E-11 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_5198 35d6650c690f6e96a211e09d50c8484c 425 Gene3D G3DSA:2.40.30.170 55 360 1.4E-40 T 31-10-2018 Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 Gene3D G3DSA:3.10.350.10 67 110 3.5E-13 T 31-10-2018 IPR036779 LysM domain superfamily Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 Gene3D G3DSA:2.70.70.10 155 297 2.4E-35 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 SUPERFAMILY SSF51261 68 294 8.89E-53 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 SMART SM00257 68 112 1.9E-11 T 31-10-2018 IPR018392 LysM domain Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 Pfam PF01551 Peptidase family M23 197 290 3.0E-30 T 31-10-2018 IPR016047 Peptidase M23 Y89_1403 1c5739dcc0f8cf27074984e8386df662 297 Pfam PF01476 LysM domain 69 109 2.6E-13 T 31-10-2018 IPR018392 LysM domain Y89_4103 11ae5017452ccc2a52a3328e46aa9969 481 Pfam PF02321 Outer membrane efflux protein 31 219 1.2E-24 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_4103 11ae5017452ccc2a52a3328e46aa9969 481 Pfam PF02321 Outer membrane efflux protein 247 430 2.5E-32 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_4103 11ae5017452ccc2a52a3328e46aa9969 481 Gene3D G3DSA:1.20.1600.10 26 449 8.4E-97 T 31-10-2018 Y89_4103 11ae5017452ccc2a52a3328e46aa9969 481 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 24 444 4.2E-144 T 31-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 Y89_4103 11ae5017452ccc2a52a3328e46aa9969 481 SUPERFAMILY SSF56954 26 440 4.19E-86 T 31-10-2018 Y89_2211 139066086d0bfd08929ec679d829cec1 241 SUPERFAMILY SSF51206 17 149 3.14E-20 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_2211 139066086d0bfd08929ec679d829cec1 241 Pfam PF13545 Crp-like helix-turn-helix domain 160 229 3.8E-13 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_2211 139066086d0bfd08929ec679d829cec1 241 Pfam PF00027 Cyclic nucleotide-binding domain 41 126 5.9E-11 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_2211 139066086d0bfd08929ec679d829cec1 241 Gene3D G3DSA:1.10.10.10 157 233 4.7E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2211 139066086d0bfd08929ec679d829cec1 241 Gene3D G3DSA:2.60.120.10 13 156 2.0E-21 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2211 139066086d0bfd08929ec679d829cec1 241 SMART SM00100 22 140 4.0E-8 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_2211 139066086d0bfd08929ec679d829cec1 241 SUPERFAMILY SSF46785 157 231 3.5E-11 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0827 95f132db5e9c514826583ad488556eb6 276 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 255 2.6E-50 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0827 95f132db5e9c514826583ad488556eb6 276 SUPERFAMILY SSF53850 2 256 9.06E-59 T 31-10-2018 Y89_0827 95f132db5e9c514826583ad488556eb6 276 Gene3D G3DSA:3.40.190.10 24 255 3.8E-62 T 31-10-2018 Y89_0827 95f132db5e9c514826583ad488556eb6 276 Gene3D G3DSA:3.40.190.10 122 214 3.8E-62 T 31-10-2018 Y89_0827 95f132db5e9c514826583ad488556eb6 276 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_0827 95f132db5e9c514826583ad488556eb6 276 SMART SM00062 34 257 1.9E-55 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 Gene3D G3DSA:3.30.428.10 5 144 9.6E-38 T 31-10-2018 IPR036265 HIT-like superfamily Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 SUPERFAMILY SSF54197 6 147 2.32E-36 T 31-10-2018 IPR036265 HIT-like superfamily Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 30 48 6.4E-9 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 98 108 6.4E-9 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 PRINTS PR00332 Histidine triad family signature 9 25 6.4E-9 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 Pfam PF01230 HIT domain 18 112 9.8E-22 T 31-10-2018 IPR001310 Histidine triad (HIT) protein Y89_4044 97f76fcc2c258aa44dd4dc015a77a9dc 153 ProSitePatterns PS00892 HIT domain signature. 91 109 - T 31-10-2018 IPR019808 Histidine triad, conserved site Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 251 267 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 378 396 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 402 420 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 466 483 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 443 458 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 282 301 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 135 153 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 61 86 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 153 172 6.4E-58 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 41 559 1.1E-108 T 31-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 SUPERFAMILY SSF56235 34 563 1.14E-147 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 Gene3D G3DSA:3.60.20.40 378 563 3.3E-53 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 Gene3D G3DSA:1.10.246.130 267 375 5.9E-25 T 31-10-2018 Y89_0382 c801f7de335ac5f60644fb9b727702c5 577 Pfam PF01019 Gamma-glutamyltranspeptidase 54 561 1.2E-158 T 31-10-2018 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 Pfam PF03466 LysR substrate binding domain 87 290 1.1E-35 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 SUPERFAMILY SSF53850 91 291 2.64E-31 T 31-10-2018 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 Gene3D G3DSA:3.40.190.10 163 268 1.1E-32 T 31-10-2018 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 Gene3D G3DSA:3.40.190.10 94 287 1.1E-32 T 31-10-2018 Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 Gene3D G3DSA:1.10.10.10 1 93 1.1E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2333 59b232ceb4fe002c14d3998f4479c6d8 310 SUPERFAMILY SSF46785 1 86 3.29E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3860 47ec8d57ca5b8dcc5493d3cfb7d8e130 162 Gene3D G3DSA:2.40.50.140 30 137 3.1E-40 T 31-10-2018 Y89_3860 47ec8d57ca5b8dcc5493d3cfb7d8e130 162 SUPERFAMILY SSF82093 30 137 2.22E-40 T 31-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 Y89_3860 47ec8d57ca5b8dcc5493d3cfb7d8e130 162 Pfam PF03100 CcmE 5 131 1.3E-47 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 Y89_3860 47ec8d57ca5b8dcc5493d3cfb7d8e130 162 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 141 33.684 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 Y89_5772 3f80a628eee4ee4e4d89ad26d001a7b5 265 Gene3D G3DSA:3.40.190.10 90 197 6.7E-12 T 31-10-2018 Y89_5772 3f80a628eee4ee4e4d89ad26d001a7b5 265 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 55 245 1.6E-15 T 31-10-2018 Y89_5772 3f80a628eee4ee4e4d89ad26d001a7b5 265 Gene3D G3DSA:3.40.190.10 198 219 6.7E-12 T 31-10-2018 Y89_5772 3f80a628eee4ee4e4d89ad26d001a7b5 265 SUPERFAMILY SSF53850 56 221 4.09E-9 T 31-10-2018 Y89_3153 b06186bcad4c4a92ef54f08b89bce96c 408 SUPERFAMILY SSF52402 5 243 2.27E-39 T 31-10-2018 Y89_3153 b06186bcad4c4a92ef54f08b89bce96c 408 Pfam PF11922 Domain of unknown function (DUF3440) 247 348 7.2E-26 T 31-10-2018 IPR021845 Protein of unknown function DUF3440 Y89_3153 b06186bcad4c4a92ef54f08b89bce96c 408 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 245 1.2E-14 T 31-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 Gene3D G3DSA:1.20.81.30 247 360 6.7E-22 T 31-10-2018 Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 Pfam PF00482 Type II secretion system (T2SS), protein F 63 185 4.5E-28 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 Pfam PF00482 Type II secretion system (T2SS), protein F 266 385 7.0E-21 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 58 70 1.3E-13 T 31-10-2018 IPR003004 GspF/PilC family Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 157 185 1.3E-13 T 31-10-2018 IPR003004 GspF/PilC family Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 359 373 1.3E-13 T 31-10-2018 IPR003004 GspF/PilC family Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 PRINTS PR00812 Bacterial general secretion pathway protein F signature 375 394 1.3E-13 T 31-10-2018 IPR003004 GspF/PilC family Y89_2411 6ee8f6cd36cfdefaf929c87632c46f19 395 Gene3D G3DSA:1.20.81.30 48 164 8.8E-21 T 31-10-2018 Y89_0404 dc02cd8b658f0a2163eead4c07cc1383 244 SUPERFAMILY SSF53335 22 242 9.36E-41 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0404 dc02cd8b658f0a2163eead4c07cc1383 244 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 29 243 29.803 T 31-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Y89_0404 dc02cd8b658f0a2163eead4c07cc1383 244 Gene3D G3DSA:3.40.50.150 35 244 1.1E-68 T 31-10-2018 Y89_0404 dc02cd8b658f0a2163eead4c07cc1383 244 Pfam PF02390 Putative methyltransferase 69 238 5.0E-55 T 31-10-2018 Y89_0404 dc02cd8b658f0a2163eead4c07cc1383 244 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 55 243 7.5E-59 T 31-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Y89_1970 8161027cbe1f72041dbf2b1510093ce1 70 Pfam PF04957 Ribosome modulation factor 1 54 7.1E-27 T 31-10-2018 IPR007040 Ribosome modulation factor Y89_1970 8161027cbe1f72041dbf2b1510093ce1 70 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 28.689 T 31-10-2018 IPR007040 Ribosome modulation factor Y89_1970 8161027cbe1f72041dbf2b1510093ce1 70 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 50 2.0E-23 T 31-10-2018 IPR007040 Ribosome modulation factor Y89_1970 8161027cbe1f72041dbf2b1510093ce1 70 Gene3D G3DSA:1.10.10.620 1 65 1.0E-27 T 31-10-2018 IPR023200 Ribosome modulation factor domain superfamily Y89_2995 7b9c1a37111a52ef0c60403240513154 340 SUPERFAMILY SSF53822 69 330 2.94E-60 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_2995 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:3.40.50.2300 168 297 1.4E-55 T 31-10-2018 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 SUPERFAMILY SSF47413 11 70 9.38E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:1.10.260.40 11 70 1.9E-18 T 31-10-2018 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 SMART SM00354 11 82 3.2E-25 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 59 1.1E-12 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 Gene3D G3DSA:3.40.50.2300 74 318 1.4E-55 T 31-10-2018 Y89_2995 7b9c1a37111a52ef0c60403240513154 340 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 72 331 9.8E-22 T 31-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 SUPERFAMILY SSF53383 86 463 1.65E-97 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 Pfam PF00155 Aminotransferase class I and II 105 461 1.1E-36 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 3.6E-14 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:3.90.1150.10 96 463 1.6E-103 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:3.40.640.10 141 360 1.6E-103 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 SMART SM00345 7 66 7.5E-21 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 Gene3D G3DSA:1.10.10.10 1 67 2.8E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3290 0f0c6d5329035e8246ad84ee62a90577 474 SUPERFAMILY SSF46785 1 74 4.31E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5326 57d2f5d0271264497d57b9cce51f62cf 149 Pfam PF04214 Protein of unknown function, DUF 53 120 1.5E-27 T 31-10-2018 IPR007332 Protein of unknown function DUF411 Y89_2244 5115bf4dfce21914d75b987eba1e27e6 155 SUPERFAMILY SSF55781 12 146 4.77E-13 T 31-10-2018 Y89_2244 5115bf4dfce21914d75b987eba1e27e6 155 Gene3D G3DSA:3.30.450.40 1 151 9.4E-12 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2244 5115bf4dfce21914d75b987eba1e27e6 155 Pfam PF13185 GAF domain 60 142 2.7E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_0415 5628a0e25cd02ffdbac3e72b75ce7565 197 Pfam PF02325 YGGT family 14 83 2.2E-19 T 31-10-2018 IPR003425 CCB3/YggT GO:0016020 Y89_0415 5628a0e25cd02ffdbac3e72b75ce7565 197 Pfam PF02325 YGGT family 110 179 1.2E-20 T 31-10-2018 IPR003425 CCB3/YggT GO:0016020 Y89_3898 b2d2e160f7b71a3abfc414f65a37e289 427 Gene3D G3DSA:3.30.750.140 274 387 1.4E-33 T 31-10-2018 IPR038610 FliK-like, C-terminal domain superfamily Y89_3898 b2d2e160f7b71a3abfc414f65a37e289 427 Pfam PF02120 Flagellar hook-length control protein FliK 295 372 8.7E-23 T 31-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y89_5853 1e65914c30b94322be4e074e5c44ae77 331 PIRSF PIRSF006470 1 330 3.3E-133 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_5853 1e65914c30b94322be4e074e5c44ae77 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 272 3.4E-82 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_5853 1e65914c30b94322be4e074e5c44ae77 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 313 1.1E-113 T 31-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Y89_5853 1e65914c30b94322be4e074e5c44ae77 331 Gene3D G3DSA:3.40.190.170 26 327 6.4E-100 T 31-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 221 443 4.3E-76 T 31-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 Gene3D G3DSA:1.10.1040.10 286 491 9.4E-76 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 SUPERFAMILY SSF48179 287 490 2.41E-61 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 27 192 7.0E-47 T 31-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 222 234 - T 31-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 PRINTS PR00084 Mannitol dehydrogenase signature 252 267 6.0E-21 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 PRINTS PR00084 Mannitol dehydrogenase signature 222 235 6.0E-21 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 PRINTS PR00084 Mannitol dehydrogenase signature 183 196 6.0E-21 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 6.0E-21 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 SUPERFAMILY SSF51735 2 286 3.15E-104 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2912 3eefadc15349047b14f294c4f5f102ed 491 Gene3D G3DSA:3.40.50.720 1 285 1.3E-119 T 31-10-2018 Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 SUPERFAMILY SSF46785 3 74 6.27E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 SUPERFAMILY SSF48008 88 218 2.88E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 Gene3D G3DSA:1.10.10.10 2 75 1.3E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 Gene3D G3DSA:1.20.120.530 84 218 8.4E-30 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 SMART SM00345 11 70 1.7E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 3.8E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 3.8E-8 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 4.2E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 SMART SM00895 90 214 1.9E-21 T 31-10-2018 IPR011711 GntR, C-terminal Y89_0131 dcf7eb53c99b6fb3d96ce5c54e6ec3ff 228 Pfam PF07729 FCD domain 90 213 2.0E-28 T 31-10-2018 IPR011711 GntR, C-terminal Y89_5364 69531ab9627fcc8148a496ee600c1943 207 PIRSF PIRSF005461 1 207 1.6E-80 T 31-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Y89_5364 69531ab9627fcc8148a496ee600c1943 207 Pfam PF01728 FtsJ-like methyltransferase 28 204 2.0E-56 T 31-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Y89_5364 69531ab9627fcc8148a496ee600c1943 207 SUPERFAMILY SSF53335 27 205 6.1E-43 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5364 69531ab9627fcc8148a496ee600c1943 207 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 205 30.614 T 31-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Y89_5364 69531ab9627fcc8148a496ee600c1943 207 Gene3D G3DSA:3.40.50.150 27 207 4.6E-61 T 31-10-2018 Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 SUPERFAMILY SSF52540 167 564 4.12E-100 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 Gene3D G3DSA:3.30.450.90 157 290 3.0E-48 T 31-10-2018 Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 SUPERFAMILY SSF160246 3 144 2.75E-35 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 Gene3D G3DSA:3.40.50.300 294 566 1.3E-107 T 31-10-2018 Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 Gene3D G3DSA:3.30.300.160 64 144 3.5E-7 T 31-10-2018 Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 385 399 - T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 10 566 4.7E-257 T 31-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 146 7.9E-14 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal Y89_5037 ac6936ed11cbdfefa40508dd1e1aac0a 566 Pfam PF00437 Type II/IV secretion system protein 190 457 3.5E-93 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_3430 d8b431abd8abc0c3fef4a407724ee4c3 207 Gene3D G3DSA:2.60.120.620 19 197 8.1E-18 T 31-10-2018 Y89_3430 d8b431abd8abc0c3fef4a407724ee4c3 207 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 110 196 3.5E-10 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.0E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.0E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.7E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 Gene3D G3DSA:1.10.357.10 1 196 3.2E-56 T 31-10-2018 Y89_2984 5dfd90304a8517b6ea8cf42de649296b 196 SUPERFAMILY SSF46689 3 86 4.24E-21 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Hamap MF_01497 Stress response kinase A [srkA]. 1 317 48.358 T 31-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Gene3D G3DSA:1.10.510.10 57 257 6.7E-121 T 31-10-2018 Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 SUPERFAMILY SSF56112 1 322 1.25E-86 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Pfam PF01636 Phosphotransferase enzyme family 32 260 2.9E-38 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Gene3D G3DSA:3.30.200.70 10 105 6.7E-121 T 31-10-2018 Y89_0508 52dbdaaac9a6f195dbb898f58bc9a1d4 324 Gene3D G3DSA:1.20.1270.170 146 306 6.7E-121 T 31-10-2018 Y89_0897 3778e7a135f88135cb5e4d6aa5bb7e10 130 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 122 2.3E-25 T 31-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 Y89_0897 3778e7a135f88135cb5e4d6aa5bb7e10 130 SUPERFAMILY SSF55331 2 125 2.24E-43 T 31-10-2018 IPR014347 Tautomerase/MIF superfamily Y89_0897 3778e7a135f88135cb5e4d6aa5bb7e10 130 Gene3D G3DSA:3.30.429.10 2 126 9.2E-48 T 31-10-2018 IPR014347 Tautomerase/MIF superfamily Y89_5968 47a1853ded0fde3717333bebeb6f30e3 233 Pfam PF04340 Protein of unknown function, DUF484 8 227 1.5E-87 T 31-10-2018 IPR007435 Protein of unknown function DUF484 Y89_5968 47a1853ded0fde3717333bebeb6f30e3 233 Gene3D G3DSA:3.30.450.40 46 233 1.7E-64 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_3669 ae31411a4f903ad8ca3ac41cdc4f7517 397 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 3 386 3.4E-128 T 31-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein Y89_3669 ae31411a4f903ad8ca3ac41cdc4f7517 397 Gene3D G3DSA:2.60.200.20 4 107 1.3E-14 T 31-10-2018 Y89_3669 ae31411a4f903ad8ca3ac41cdc4f7517 397 SUPERFAMILY SSF49879 19 104 2.9E-16 T 31-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Y89_3669 ae31411a4f903ad8ca3ac41cdc4f7517 397 Pfam PF00498 FHA domain 30 96 7.9E-13 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Y89_0511 75b0bad8b1af4b63a41f8887b94fa03b 241 Pfam PF00156 Phosphoribosyl transferase domain 145 238 1.8E-8 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_0511 75b0bad8b1af4b63a41f8887b94fa03b 241 Gene3D G3DSA:3.40.50.2020 82 241 1.8E-17 T 31-10-2018 Y89_0511 75b0bad8b1af4b63a41f8887b94fa03b 241 SUPERFAMILY SSF53271 47 239 1.31E-32 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_4493 59e7a22ac6a8719940877e5221e0cb5e 472 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_4493 59e7a22ac6a8719940877e5221e0cb5e 472 Pfam PF00324 Amino acid permease 19 453 1.4E-113 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_4493 59e7a22ac6a8719940877e5221e0cb5e 472 PIRSF PIRSF006060 1 469 8.4E-75 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4493 59e7a22ac6a8719940877e5221e0cb5e 472 Gene3D G3DSA:1.20.1740.10 11 459 8.7E-57 T 31-10-2018 Y89_2790 682cca4fe0762d54854c504de1eb8636 305 Gene3D G3DSA:3.40.50.1980 137 198 3.0E-5 T 31-10-2018 Y89_2790 682cca4fe0762d54854c504de1eb8636 305 Pfam PF01297 Zinc-uptake complex component A periplasmic 92 284 3.5E-13 T 31-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Y89_2790 682cca4fe0762d54854c504de1eb8636 305 SUPERFAMILY SSF53807 35 300 4.91E-31 T 31-10-2018 Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 Gene3D G3DSA:3.40.190.10 165 262 2.7E-36 T 31-10-2018 Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 SUPERFAMILY SSF53850 97 294 4.71E-26 T 31-10-2018 Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 Pfam PF03466 LysR substrate binding domain 95 289 5.8E-23 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 Gene3D G3DSA:1.10.10.10 10 94 4.1E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 SUPERFAMILY SSF46785 5 118 8.17E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 3.3E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2816 2c3e1f80da236138b000ea9c5d6264cf 306 Gene3D G3DSA:3.40.190.10 107 286 2.7E-36 T 31-10-2018 Y89_1750 683c747fa89c692545648b408245bde4 253 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 137 225 9.7E-26 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_1750 683c747fa89c692545648b408245bde4 253 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 130 1.7E-31 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y89_1750 683c747fa89c692545648b408245bde4 253 Gene3D G3DSA:3.10.50.40 91 251 2.5E-53 T 31-10-2018 Y89_1750 683c747fa89c692545648b408245bde4 253 SUPERFAMILY SSF54534 30 228 1.79E-56 T 31-10-2018 Y89_1750 683c747fa89c692545648b408245bde4 253 Gene3D G3DSA:1.10.287.460 27 90 2.6E-20 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 Y89_3632 77ced11d063478108acfda81e330f45b 121 TIGRFAM TIGR02502 type_III_YscX: type III secretion protein, YscX family 1 121 2.0E-58 T 31-10-2018 IPR012672 Type III secretion system YscX Y89_3632 77ced11d063478108acfda81e330f45b 121 Pfam PF09474 Type III secretion system YscX (type_III_YscX) 1 121 4.7E-54 T 31-10-2018 IPR012672 Type III secretion system YscX Y89_3583 8c33c45ffcdf2dcf9b4c19818311994f 94 SUPERFAMILY SSF55729 7 91 3.77E-23 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3583 8c33c45ffcdf2dcf9b4c19818311994f 94 Pfam PF14542 GCN5-related N-acetyl-transferase 15 88 3.9E-23 T 31-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase Y89_3583 8c33c45ffcdf2dcf9b4c19818311994f 94 Gene3D G3DSA:3.40.630.30 1 93 1.4E-25 T 31-10-2018 Y89_4631 2697c7e9e77a1cd65e9e6e05c875c997 300 SUPERFAMILY SSF53474 12 272 8.94E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4631 2697c7e9e77a1cd65e9e6e05c875c997 300 Pfam PF00561 alpha/beta hydrolase fold 29 253 3.7E-11 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4631 2697c7e9e77a1cd65e9e6e05c875c997 300 Gene3D G3DSA:3.40.50.1820 2 273 4.4E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0342 4f135165b5b8132044a7209502a87a2d 464 Gene3D G3DSA:1.20.1740.10 27 459 1.5E-68 T 31-10-2018 Y89_0342 4f135165b5b8132044a7209502a87a2d 464 Pfam PF00324 Amino acid permease 37 431 2.7E-35 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_0342 4f135165b5b8132044a7209502a87a2d 464 PIRSF PIRSF006060 17 453 5.6E-64 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4053 cab5ee42164b0dfd6b6a686711a37f12 323 Pfam PF01545 Cation efflux family 30 243 1.9E-41 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_4053 cab5ee42164b0dfd6b6a686711a37f12 323 SUPERFAMILY SSF161111 22 244 7.98E-49 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_4053 cab5ee42164b0dfd6b6a686711a37f12 323 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 317 6.2E-65 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_4053 cab5ee42164b0dfd6b6a686711a37f12 323 Gene3D G3DSA:1.20.1510.10 23 243 3.9E-29 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 Pfam PF13537 Glutamine amidotransferase domain 48 170 3.2E-43 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 PIRSF PIRSF001589 1 610 4.6E-140 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 SUPERFAMILY SSF52402 231 578 7.33E-60 T 31-10-2018 Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 Gene3D G3DSA:3.60.20.10 3 186 2.4E-61 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 SUPERFAMILY SSF56235 1 226 9.44E-62 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 537 2.4E-176 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_0062 bbc54a2302747bc682b1e3cffd4a733f 610 Pfam PF00733 Asparagine synthase 242 604 4.3E-82 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y89_5642 f7070e7e1e532ee3d57cf74bec803409 248 Gene3D G3DSA:3.90.640.20 154 248 6.0E-24 T 31-10-2018 IPR037126 PdaC/RsiV-like superfamily Y89_5642 f7070e7e1e532ee3d57cf74bec803409 248 Pfam PF11738 Protein of unknown function (DUF3298) 183 232 2.5E-5 T 31-10-2018 IPR021729 Domain of unknown function DUF3298 Y89_5642 f7070e7e1e532ee3d57cf74bec803409 248 Gene3D G3DSA:3.30.565.40 23 153 5.2E-40 T 31-10-2018 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 SMART SM00411 1 90 3.5E-38 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.1E-16 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.1E-16 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.1E-16 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 SUPERFAMILY SSF47729 1 90 2.65E-31 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 Gene3D G3DSA:4.10.520.10 1 90 1.5E-33 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_6086 6ef67f0f273137b64cc28549bf24951c 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-32 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_0339 e1c382ab9345ca41a6d55390b81764a8 310 Pfam PF06977 SdiA-regulated 51 297 7.1E-92 T 31-10-2018 IPR009722 SdiA-regulated Y89_0339 e1c382ab9345ca41a6d55390b81764a8 310 SUPERFAMILY SSF50956 20 299 8.63E-41 T 31-10-2018 Y89_0339 e1c382ab9345ca41a6d55390b81764a8 310 Gene3D G3DSA:2.120.10.30 70 303 6.8E-11 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_4343 d250e6454166fc654ae103bab5036d81 299 SUPERFAMILY SSF53448 3 221 7.39E-50 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4343 d250e6454166fc654ae103bab5036d81 299 Gene3D G3DSA:3.90.550.10 1 250 1.0E-51 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4343 d250e6454166fc654ae103bab5036d81 299 Pfam PF00535 Glycosyl transferase family 2 6 123 1.2E-24 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_0679 43e157e44b5f061929f9acd31c49bc1e 415 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 216 407 3.3E-10 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0679 43e157e44b5f061929f9acd31c49bc1e 415 Gene3D G3DSA:1.10.3720.10 163 413 2.9E-48 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0679 43e157e44b5f061929f9acd31c49bc1e 415 SUPERFAMILY SSF161098 189 403 1.3E-43 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3155 a94d0de6c4a097eae82949e86c232374 482 Pfam PF00171 Aldehyde dehydrogenase family 13 475 1.0E-140 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3155 a94d0de6c4a097eae82949e86c232374 482 Gene3D G3DSA:3.40.605.10 18 469 9.7E-144 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_3155 a94d0de6c4a097eae82949e86c232374 482 SUPERFAMILY SSF53720 4 477 1.26E-138 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_3155 a94d0de6c4a097eae82949e86c232374 482 Gene3D G3DSA:3.40.309.10 252 445 9.7E-144 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF13332 Haemagluttinin repeat 4786 4926 1.9E-11 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF13332 Haemagluttinin repeat 4717 4784 6.9E-8 T 31-10-2018 IPR025157 Hemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2986 3026 0.0059 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1499 1539 2.4E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 816 857 3.1E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 647 687 2.3E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3291 3321 0.14 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 440 480 0.024 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 523 563 6.6E-10 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3301 3342 0.19 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2270 2311 5.7E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2881 2920 3.9E-9 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 689 729 0.0084 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3132 3172 0.0026 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2504 2542 5.8E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3783 3820 2.7E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3459 3491 0.81 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 379 418 0.018 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3325 3362 3.7E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2292 2332 1.1E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1273 1311 0.0022 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1021 1061 0.0022 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3364 3407 0.046 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3068 3098 0.0038 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2354 2393 0.019 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1790 1827 3.2E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 898 937 0.79 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 405 438 1.9E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1211 1250 1.2E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1689 1723 0.0031 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1104 1144 0.0085 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1915 1955 1.5E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1874 1914 3.2E-8 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2108 2141 0.86 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3343 3383 0.0011 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2815 2847 2.6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1353 1393 7.5E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1394 1433 6.9E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3218 3258 6.0E-9 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 858 890 0.019 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3097 3130 5.7E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 564 604 1.9E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2146 2184 8.6E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3027 3063 4.0E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2752 2791 1.4E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2966 3004 0.004 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2462 2501 1.0E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2648 2687 7.8E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2923 2962 0.006 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2566 2605 8.1E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 4581 4618 0.005 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2607 2647 1.3E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1669 1706 8.7E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1814 1850 0.0012 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1062 1102 2.2E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1770 1810 7.1E-9 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 4600 4636 0.21 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3260 3299 4.2E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1749 1789 3.9E-8 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1231 1272 5.3E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3408 3449 0.0013 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2417 2459 0.78 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3745 3781 0.0011 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2711 2751 4.1E-9 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2126 2161 0.25 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1458 1498 1.9E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1627 1666 3.4E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 606 646 0.0022 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 796 835 5.0E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2690 2730 1.5E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3540 3578 7.9E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 752 795 0.65 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 979 1019 4.8E-5 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1313 1352 0.0033 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2008 2042 0.16 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2836 2879 0.037 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 364 399 2.0 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 482 522 1.3E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 4667 4700 0.41 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1938 1976 0.063 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3394 3428 2.8E-6 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2333 2373 0.024 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 3174 3215 0.037 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2044 2083 9.9E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2187 2227 1.8E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 940 978 1.5E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 419 460 6.5E-7 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 311 350 0.68 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2228 2267 2.0E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2773 2813 3.8E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2731 2770 2.3E-4 T 31-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Gene3D G3DSA:2.160.20.10 35 327 1.9E-99 T 31-10-2018 IPR012334 Pectin lyase fold Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 970 1032 0.0054 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3314 3375 0.062 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 406 460 3.3E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1450 1502 2.7E-4 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 618 667 2.8E-7 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 216 292 4.7E-8 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1269 1322 5.1E-4 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1337 1393 1.6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1753 1810 4.7E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 553 617 0.068 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2342 2405 0.047 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2701 2764 1.9E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2100 2157 2.9E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3011 3079 1.2E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2022 2097 0.004 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1870 1914 6.9E-5 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 854 907 0.0038 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 910 965 4.6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3497 3556 8.9 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2548 2647 8.4E-4 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 4536 4610 0.083 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 4613 4701 88.0 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1684 1738 1.7E-5 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3788 3857 1.6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2169 2227 8.7E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 469 534 1.1E-5 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3221 3310 2.7E-6 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1924 1987 0.001 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1182 1264 4.0E-5 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 3864 3956 2.8 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 2282 2332 2.6E-5 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05594 Haemagluttinin repeat 1033 1082 2.9E-7 T 31-10-2018 IPR008619 Filamentous haemagglutinin repeat Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 163 2.0E-17 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 SUPERFAMILY SSF56266 5131 5259 6.28E-5 T 31-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 SUPERFAMILY SSF51126 45 318 6.28E-55 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 SMART SM00912 47 168 4.7E-46 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_2739 8c5d55653d2a2329bf9ee57a42d0fcc6 5654 Pfam PF05860 haemagglutination activity domain 33 166 2.3E-33 T 31-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal Y89_4499 e546a94b75071dc64028b105c22597af 818 SUPERFAMILY SSF141868 553 796 4.84E-73 T 31-10-2018 IPR035919 EAL domain superfamily Y89_4499 e546a94b75071dc64028b105c22597af 818 SMART SM00052 547 797 2.6E-69 T 31-10-2018 IPR001633 EAL domain Y89_4499 e546a94b75071dc64028b105c22597af 818 Gene3D G3DSA:3.30.70.270 368 536 1.5E-57 T 31-10-2018 Y89_4499 e546a94b75071dc64028b105c22597af 818 SUPERFAMILY SSF55073 379 537 1.8E-49 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4499 e546a94b75071dc64028b105c22597af 818 SMART SM00091 245 311 3.4E-7 T 31-10-2018 IPR000014 PAS domain Y89_4499 e546a94b75071dc64028b105c22597af 818 Pfam PF00989 PAS fold 251 360 4.2E-11 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_4499 e546a94b75071dc64028b105c22597af 818 Pfam PF00563 EAL domain 553 792 5.2E-63 T 31-10-2018 IPR001633 EAL domain Y89_4499 e546a94b75071dc64028b105c22597af 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 251 369 8.3E-14 T 31-10-2018 IPR000014 PAS domain Y89_4499 e546a94b75071dc64028b105c22597af 818 Pfam PF00990 Diguanylate cyclase, GGDEF domain 374 531 2.3E-45 T 31-10-2018 IPR000160 GGDEF domain Y89_4499 e546a94b75071dc64028b105c22597af 818 Gene3D G3DSA:3.20.20.450 537 798 2.9E-83 T 31-10-2018 IPR035919 EAL domain superfamily Y89_4499 e546a94b75071dc64028b105c22597af 818 Gene3D G3DSA:3.30.450.20 234 361 1.5E-19 T 31-10-2018 Y89_4499 e546a94b75071dc64028b105c22597af 818 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 370 534 3.0E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_4499 e546a94b75071dc64028b105c22597af 818 SMART SM00267 363 535 5.3E-64 T 31-10-2018 IPR000160 GGDEF domain Y89_4499 e546a94b75071dc64028b105c22597af 818 SUPERFAMILY SSF55785 232 361 1.1E-17 T 31-10-2018 IPR035965 PAS domain superfamily Y89_5571 e15876a06aa046443b65b15586370783 528 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 168 4.4E-42 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_5571 e15876a06aa046443b65b15586370783 528 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 325 3.0E-17 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_5571 e15876a06aa046443b65b15586370783 528 SUPERFAMILY SSF52467 185 341 6.78E-62 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_5571 e15876a06aa046443b65b15586370783 528 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_5571 e15876a06aa046443b65b15586370783 528 SUPERFAMILY SSF52518 351 525 7.76E-48 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_5571 e15876a06aa046443b65b15586370783 528 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 521 6.2E-29 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_5571 e15876a06aa046443b65b15586370783 528 Gene3D G3DSA:3.40.50.1220 182 341 1.4E-36 T 31-10-2018 Y89_5571 e15876a06aa046443b65b15586370783 528 Gene3D G3DSA:3.40.50.970 1 179 5.8E-58 T 31-10-2018 Y89_5571 e15876a06aa046443b65b15586370783 528 Gene3D G3DSA:3.40.50.970 345 525 4.0E-54 T 31-10-2018 Y89_5571 e15876a06aa046443b65b15586370783 528 SUPERFAMILY SSF52518 4 170 1.37E-38 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_6348 605e64d463f346c54e792aacd01052d1 639 SMART SM00437 251 511 2.0E-68 T 31-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Pfam PF01751 Toprim domain 3 119 2.3E-19 T 31-10-2018 IPR006171 TOPRIM domain Y89_6348 605e64d463f346c54e792aacd01052d1 639 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 639 45.427 T 31-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Gene3D G3DSA:2.70.20.10 190 457 6.9E-105 T 31-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Gene3D G3DSA:1.10.290.10 259 378 6.9E-105 T 31-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Y89_6348 605e64d463f346c54e792aacd01052d1 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 364 380 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 474 488 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 168 186 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 85 98 2.3E-27 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 SUPERFAMILY SSF56712 1 598 2.09E-137 T 31-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Y89_6348 605e64d463f346c54e792aacd01052d1 639 SMART SM00436 110 198 3.7E-20 T 31-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 622 1.5E-137 T 31-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Gene3D G3DSA:3.40.50.140 1 140 6.0E-37 T 31-10-2018 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Pfam PF01131 DNA topoisomerase 138 547 1.8E-92 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Y89_6348 605e64d463f346c54e792aacd01052d1 639 SMART SM00493 1 111 2.0E-14 T 31-10-2018 IPR006171 TOPRIM domain Y89_6348 605e64d463f346c54e792aacd01052d1 639 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 288 302 - T 31-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Y89_6348 605e64d463f346c54e792aacd01052d1 639 Gene3D G3DSA:1.10.460.10 142 552 6.9E-105 T 31-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Y89_6238 dd32548c1fa19fd20e63bcab44c10868 307 Pfam PF01297 Zinc-uptake complex component A periplasmic 28 297 5.9E-51 T 31-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Y89_6238 dd32548c1fa19fd20e63bcab44c10868 307 SUPERFAMILY SSF53807 25 304 4.91E-68 T 31-10-2018 Y89_6238 dd32548c1fa19fd20e63bcab44c10868 307 Gene3D G3DSA:3.40.50.1980 195 306 6.0E-33 T 31-10-2018 Y89_6238 dd32548c1fa19fd20e63bcab44c10868 307 Gene3D G3DSA:3.40.50.1980 27 193 1.8E-48 T 31-10-2018 Y89_6221 7a5b17038fa4c881f96c81528fb53ca4 155 Gene3D G3DSA:3.40.1420.10 27 155 4.1E-40 T 31-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily Y89_6221 7a5b17038fa4c881f96c81528fb53ca4 155 PIRSF PIRSF009103 1 155 1.2E-67 T 31-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y89_6221 7a5b17038fa4c881f96c81528fb53ca4 155 SUPERFAMILY SSF89872 27 155 4.58E-50 T 31-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily Y89_6221 7a5b17038fa4c881f96c81528fb53ca4 155 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 38 153 2.8E-46 T 31-10-2018 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 Gene3D G3DSA:3.40.50.10470 195 349 1.5E-53 T 31-10-2018 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 Pfam PF01008 Initiation factor 2 subunit family 53 341 5.9E-74 T 31-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 10 352 39.809 T 31-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 341 1.3E-105 T 31-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 Gene3D G3DSA:1.20.120.1840 6 194 6.7E-54 T 31-10-2018 Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 SUPERFAMILY SSF100950 9 347 5.86E-113 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_1847 73d78d3f2178b8a565bea0e62d25ee11 358 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 12 341 1.3E-139 T 31-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Y89_0198 9d7b67bf5ed2233a35175a4e57b68668 353 SUPERFAMILY SSF53850 32 274 2.3E-39 T 31-10-2018 Y89_0198 9d7b67bf5ed2233a35175a4e57b68668 353 Pfam PF09084 NMT1/THI5 like 68 260 2.4E-19 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_0198 9d7b67bf5ed2233a35175a4e57b68668 353 Gene3D G3DSA:3.40.190.10 126 227 1.3E-109 T 31-10-2018 Y89_0198 9d7b67bf5ed2233a35175a4e57b68668 353 Gene3D G3DSA:3.40.190.10 36 339 1.3E-109 T 31-10-2018 Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 210 1.1E-50 T 31-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 68 1.5E-9 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 SUPERFAMILY SSF52374 1 211 3.75E-53 T 31-10-2018 Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 Gene3D G3DSA:3.40.50.620 2 214 1.2E-71 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 Pfam PF01467 Cytidylyltransferase-like 7 184 6.9E-31 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Y89_1018 2369378cd22fdc836ea01a6363ff6484 214 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 211 31.119 T 31-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Y89_0098 d4f1aa74b152b51b328b2b2e1be3ed85 619 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 618 7.4E-211 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_0098 d4f1aa74b152b51b328b2b2e1be3ed85 619 PIRSF PIRSF028304 1 619 1.4E-191 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_0098 d4f1aa74b152b51b328b2b2e1be3ed85 619 Pfam PF05947 Type VI secretion system, TssF 6 617 4.2E-229 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 SUPERFAMILY SSF53067 3 122 2.98E-32 T 31-10-2018 Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 1.2E-117 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 SUPERFAMILY SSF53067 101 313 4.09E-43 T 31-10-2018 Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 Gene3D G3DSA:3.30.420.40 129 297 1.7E-126 T 31-10-2018 Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 6.6E-133 T 31-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 Pfam PF00814 Glycoprotease family 24 311 1.1E-100 T 31-10-2018 IPR000905 Gcp-like domain Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.1E-51 T 31-10-2018 IPR017861 Kae1/TsaD family Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 Gene3D G3DSA:3.30.420.40 3 318 1.7E-126 T 31-10-2018 Y89_0652 d577d059d1f215a3de3d0df70d3d72e4 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 62.801 T 31-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Y89_0996 c9a8bccd2feca84833de22c953e1faac 527 SUPERFAMILY SSF56112 283 489 1.66E-10 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0996 c9a8bccd2feca84833de22c953e1faac 527 Gene3D G3DSA:1.10.510.10 325 494 1.2E-11 T 31-10-2018 Y89_5594 04df5e6187f32b81922140b3213cc99c 231 SMART SM00257 35 79 3.5E-11 T 31-10-2018 IPR018392 LysM domain Y89_5594 04df5e6187f32b81922140b3213cc99c 231 Gene3D G3DSA:3.10.350.10 35 77 6.8E-13 T 31-10-2018 IPR036779 LysM domain superfamily Y89_5594 04df5e6187f32b81922140b3213cc99c 231 SUPERFAMILY SSF51261 36 228 2.04E-45 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_5594 04df5e6187f32b81922140b3213cc99c 231 Pfam PF01551 Peptidase family M23 131 224 7.8E-28 T 31-10-2018 IPR016047 Peptidase M23 Y89_5594 04df5e6187f32b81922140b3213cc99c 231 Pfam PF01476 LysM domain 36 76 3.1E-14 T 31-10-2018 IPR018392 LysM domain Y89_5594 04df5e6187f32b81922140b3213cc99c 231 Gene3D G3DSA:2.70.70.10 106 228 4.8E-32 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_5331 4bdf48716dbf23b347b6be4f7d95030e 431 PIRSF PIRSF005353 1 431 1.6E-180 T 31-10-2018 IPR026033 Purine permease PbuG-like Y89_5331 4bdf48716dbf23b347b6be4f7d95030e 431 Pfam PF00860 Permease family 17 391 5.3E-54 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 Pfam PF00005 ABC transporter 375 523 4.5E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 SUPERFAMILY SSF90123 13 343 3.01E-54 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 SUPERFAMILY SSF52540 356 591 1.96E-79 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 Gene3D G3DSA:3.40.50.300 353 593 2.4E-81 T 31-10-2018 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 Gene3D G3DSA:1.20.1560.10 12 340 1.3E-50 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 SMART SM00382 384 575 7.3E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4500 a967091ba9077aa69f5cec36b26aade9 596 Pfam PF00664 ABC transporter transmembrane region 63 313 7.9E-29 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_3027 8ab398a2fbb91ed0aab8e04599f934f7 403 Gene3D G3DSA:3.40.710.10 91 375 1.3E-89 T 31-10-2018 Y89_3027 8ab398a2fbb91ed0aab8e04599f934f7 403 SUPERFAMILY SSF56601 2 390 9.25E-74 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_3027 8ab398a2fbb91ed0aab8e04599f934f7 403 Gene3D G3DSA:1.20.58.710 143 241 1.3E-89 T 31-10-2018 Y89_3027 8ab398a2fbb91ed0aab8e04599f934f7 403 Pfam PF00144 Beta-lactamase 98 381 7.1E-24 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_6259 10852a19e0eef21520b14d1be3a91f85 160 Pfam PF03061 Thioesterase superfamily 23 96 2.5E-18 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_6259 10852a19e0eef21520b14d1be3a91f85 160 SUPERFAMILY SSF54637 4 154 6.56E-46 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_6259 10852a19e0eef21520b14d1be3a91f85 160 Gene3D G3DSA:3.10.129.10 2 153 5.5E-59 T 31-10-2018 Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 SUPERFAMILY SSF47090 377 446 3.4E-17 T 31-10-2018 IPR036365 PGBD-like superfamily Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 Gene3D G3DSA:1.10.101.10 389 447 3.5E-10 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 Pfam PF13406 Transglycosylase SLT domain 75 369 1.9E-111 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 75 373 6.9E-119 T 31-10-2018 IPR011970 Lytic murein transglycosylase Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 Gene3D G3DSA:1.10.8.350 90 251 7.7E-85 T 31-10-2018 Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 Gene3D G3DSA:1.10.530.10 118 368 7.7E-85 T 31-10-2018 Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 SUPERFAMILY SSF53955 68 375 7.87E-105 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_1031 24524dc5f4d8355a700a959fa1f17038 448 Pfam PF01471 Putative peptidoglycan binding domain 391 445 3.1E-12 T 31-10-2018 IPR002477 Peptidoglycan binding-like Y89_3037 6ca1b859354f9ecf5ac7a8509a343d93 548 Pfam PF06980 Protein of unknown function (DUF1302) 25 547 2.2E-141 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 Pfam PF00083 Sugar (and other) transporter 227 422 6.7E-9 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 Pfam PF00083 Sugar (and other) transporter 20 216 2.2E-19 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 Gene3D G3DSA:1.20.1250.20 16 424 6.3E-57 T 31-10-2018 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4730 d0b5981a7adaf090a7adb676bd1b8844 438 SUPERFAMILY SSF103473 16 424 5.1E-60 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2521 1cfac7821a16425ee9b58a20276894d5 534 SUPERFAMILY SSF52096 236 516 2.19E-87 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2521 1cfac7821a16425ee9b58a20276894d5 534 Gene3D G3DSA:3.90.226.10 1 271 5.1E-101 T 31-10-2018 Y89_2521 1cfac7821a16425ee9b58a20276894d5 534 Gene3D G3DSA:3.90.226.10 275 534 6.5E-103 T 31-10-2018 Y89_2521 1cfac7821a16425ee9b58a20276894d5 534 Pfam PF01039 Carboxyl transferase domain 47 524 1.7E-152 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_2521 1cfac7821a16425ee9b58a20276894d5 534 SUPERFAMILY SSF52096 21 269 1.22E-75 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2354 bc85eb3e6f1ca162517d9c06e78158eb 499 Gene3D G3DSA:3.40.50.300 88 303 1.3E-9 T 31-10-2018 Y89_2354 bc85eb3e6f1ca162517d9c06e78158eb 499 SUPERFAMILY SSF52540 117 263 1.74E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2354 bc85eb3e6f1ca162517d9c06e78158eb 499 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 145 486 1.8E-97 T 31-10-2018 IPR018647 Domain of unknown function DUF2075 Y89_2354 bc85eb3e6f1ca162517d9c06e78158eb 499 SMART SM00382 143 289 0.0067 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 549 793 8.0E-89 T 31-10-2018 IPR014145 DNA ligase D, polymerase domain Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Gene3D G3DSA:3.30.470.30 241 356 1.8E-47 T 31-10-2018 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Gene3D G3DSA:3.90.920.30 556 840 5.1E-101 T 31-10-2018 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Gene3D G3DSA:3.30.1490.70 229 397 1.8E-47 T 31-10-2018 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 SUPERFAMILY SSF50249 403 523 3.98E-28 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Gene3D G3DSA:2.40.50.140 402 523 1.4E-37 T 31-10-2018 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Pfam PF13298 DNA polymerase Ligase (LigD) 40 144 4.9E-39 T 31-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 SUPERFAMILY SSF56091 216 399 2.3E-45 T 31-10-2018 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Pfam PF01068 ATP dependent DNA ligase domain 224 399 1.8E-22 T 31-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 219 521 6.4E-111 T 31-10-2018 IPR014146 DNA ligase D, ligase domain Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 7 162 5.5E-71 T 31-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 228 823 1.3E-229 T 31-10-2018 IPR014143 DNA ligase D Y89_3141 ef3bccbdcce39099827f41e740074dcc 840 Pfam PF04679 ATP dependent DNA ligase C terminal region 418 515 1.1E-23 T 31-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Y89_0538 762f51db0907f9d276520ccde4611f38 119 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 42 109 1.0E-9 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0538 762f51db0907f9d276520ccde4611f38 119 SUPERFAMILY SSF46626 14 110 5.7E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0538 762f51db0907f9d276520ccde4611f38 119 Gene3D G3DSA:1.10.760.10 28 110 1.5E-12 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_1677 13a30251f42851b2048a555a0b901fc9 141 Gene3D G3DSA:3.10.450.50 1 132 1.3E-41 T 31-10-2018 Y89_1677 13a30251f42851b2048a555a0b901fc9 141 Pfam PF12680 SnoaL-like domain 11 112 6.0E-12 T 31-10-2018 IPR037401 SnoaL-like domain Y89_1677 13a30251f42851b2048a555a0b901fc9 141 ProDom PD011053 BIOSYNTHESIS PHENAZINE PROBABLE PHZA PHZB ANTIBIOTIC VIRULENCE A/B EHPA PHZ1 25 129 2.0E-4 T 31-10-2018 IPR004964 Phenazine biosynthesis protein A/B GO:0017000 Y89_1677 13a30251f42851b2048a555a0b901fc9 141 SUPERFAMILY SSF54427 1 129 1.62E-38 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_1434 53fab6e51a7fbd30f861ccc532284ac7 395 SUPERFAMILY SSF89796 6 393 5.62E-135 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_1434 53fab6e51a7fbd30f861ccc532284ac7 395 Gene3D G3DSA:3.30.1540.10 235 326 1.2E-126 T 31-10-2018 Y89_1434 53fab6e51a7fbd30f861ccc532284ac7 395 Pfam PF02515 CoA-transferase family III 8 370 5.0E-122 T 31-10-2018 IPR003673 CoA-transferase family III GO:0003824 Y89_1434 53fab6e51a7fbd30f861ccc532284ac7 395 Gene3D G3DSA:3.40.50.10540 8 387 1.2E-126 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_3299 f905dea881ee33c158ecdcd1b5d4da90 279 Gene3D G3DSA:3.90.550.10 1 274 1.5E-80 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3299 f905dea881ee33c158ecdcd1b5d4da90 279 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 264 1.9E-122 T 31-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 Y89_3299 f905dea881ee33c158ecdcd1b5d4da90 279 SUPERFAMILY SSF53448 2 270 5.18E-64 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3299 f905dea881ee33c158ecdcd1b5d4da90 279 Pfam PF00483 Nucleotidyl transferase 9 267 4.1E-31 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 SUPERFAMILY SSF51905 1 323 5.4E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.50.50.60 8 280 5.3E-96 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.6E-22 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 6.6E-22 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 6.6E-22 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.6E-22 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.6E-22 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 4.1E-15 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.1E-15 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.1E-15 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 359 374 4.1E-15 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 4.1E-15 T 31-10-2018 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.50.50.60 110 244 5.3E-96 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 281 1.7E-50 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_6087 0e7ed2bb6ffaf6a0b50497e751bb2874 384 Gene3D G3DSA:3.30.390.120 316 379 1.2E-27 T 31-10-2018 Y89_4064 7e1a4861e3f8db4a689454cb127d1a93 399 Gene3D G3DSA:1.20.1250.20 2 391 1.5E-50 T 31-10-2018 Y89_4064 7e1a4861e3f8db4a689454cb127d1a93 399 SUPERFAMILY SSF103473 3 388 8.76E-56 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4064 7e1a4861e3f8db4a689454cb127d1a93 399 Pfam PF07690 Major Facilitator Superfamily 14 312 7.7E-29 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4515 56adf27b428963673fdcac4346406f38 670 Pfam PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal 505 665 2.3E-47 T 31-10-2018 IPR031331 Neutral/alkaline non-lysosomal ceramidase, C-terminal KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119 Y89_4515 56adf27b428963673fdcac4346406f38 670 Pfam PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal 29 501 3.2E-175 T 31-10-2018 IPR031329 Neutral/alkaline non-lysosomal ceramidase, N-terminal KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119|Reactome: R-HSA-1660662 Y89_4515 56adf27b428963673fdcac4346406f38 670 Gene3D G3DSA:2.60.40.2300 536 670 3.6E-51 T 31-10-2018 IPR038445 Neutral ceramidase, C-terminal domain superfamily KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 Gene3D G3DSA:1.10.10.60 1 48 2.1E-23 T 31-10-2018 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 SUPERFAMILY SSF46689 1 70 3.54E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 Gene3D G3DSA:1.10.357.10 49 180 2.3E-33 T 31-10-2018 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.9E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.9E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 5.2E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1886 1dd37db6e431af269a09737f11ed3249 180 SUPERFAMILY SSF48498 78 179 1.25E-25 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3025 d062adb4023f312938bdf096b0e987bc 198 SUPERFAMILY SSF53955 12 158 3.21E-24 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_3025 d062adb4023f312938bdf096b0e987bc 198 Gene3D G3DSA:1.10.530.10 31 193 1.2E-13 T 31-10-2018 Y89_5869 aa56492661e7381a10e983f3c8c10a63 135 Pfam PF13488 Glycine zipper 77 119 2.2E-5 T 31-10-2018 IPR039567 Glycine zipper domain Y89_3654 74c1c910a3021288311409245c4c31d1 327 Pfam PF12146 Serine aminopeptidase, S33 83 170 2.8E-10 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_3654 74c1c910a3021288311409245c4c31d1 327 SUPERFAMILY SSF53474 29 296 6.43E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3654 74c1c910a3021288311409245c4c31d1 327 Gene3D G3DSA:3.40.50.1820 29 290 1.5E-36 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1641 e66c3a43599018844e6fbe4bfbbaf586 172 SUPERFAMILY SSF55729 28 167 1.68E-27 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1641 e66c3a43599018844e6fbe4bfbbaf586 172 Gene3D G3DSA:3.40.630.30 28 169 5.7E-31 T 31-10-2018 Y89_1641 e66c3a43599018844e6fbe4bfbbaf586 172 Pfam PF00583 Acetyltransferase (GNAT) family 58 160 2.9E-17 T 31-10-2018 IPR000182 GNAT domain Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 241 248 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 269 280 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 Pfam PF00171 Aldehyde dehydrogenase family 13 472 1.5E-174 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 SUPERFAMILY SSF53720 2 478 6.54E-171 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 Gene3D G3DSA:3.40.309.10 247 443 2.9E-181 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 2 485 1.0E-223 T 31-10-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 Y89_0899 b95ea3745870ce83281eeffb96ae3b6f 486 Gene3D G3DSA:3.40.605.10 17 472 2.9E-181 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_4468 ca60af2436c655ab3916329819d35cc9 370 SUPERFAMILY SSF53187 18 363 1.42E-42 T 31-10-2018 Y89_4468 ca60af2436c655ab3916329819d35cc9 370 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 145 357 7.8E-16 T 31-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Y89_4468 ca60af2436c655ab3916329819d35cc9 370 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 29 109 1.0E-8 T 31-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Y89_4468 ca60af2436c655ab3916329819d35cc9 370 Gene3D G3DSA:3.40.630.10 6 285 4.3E-71 T 31-10-2018 Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 Pfam PF00364 Biotin-requiring enzyme 5 78 1.4E-14 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 SUPERFAMILY SSF51230 5 78 3.66E-18 T 31-10-2018 IPR011053 Single hybrid motif Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 Gene3D G3DSA:2.40.50.100 1 78 4.3E-22 T 31-10-2018 Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 40 53 4.4E-9 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 8 21 4.4E-9 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_0515 84e7f3d48924c3219e58e90a070057b7 82 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 25 39 4.4E-9 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 126 4.5E-42 T 31-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 31-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 122 3.6E-32 T 31-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 Gene3D G3DSA:1.20.1300.10 1 128 1.8E-45 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 31-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 SUPERFAMILY SSF81343 2 128 9.65E-36 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_3754 134452e095d4b081c47592b69c3ae4b4 128 PIRSF PIRSF000178 1 128 6.3E-32 T 31-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 ProSitePatterns PS00163 Fumarate lyases signature. 281 290 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 SUPERFAMILY SSF48557 10 461 4.4E-156 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00149 Fumarate lyase superfamily signature 281 297 1.4E-30 T 31-10-2018 IPR000362 Fumarate lyase family Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00149 Fumarate lyase superfamily signature 108 126 1.4E-30 T 31-10-2018 IPR000362 Fumarate lyase family Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00149 Fumarate lyase superfamily signature 153 171 1.4E-30 T 31-10-2018 IPR000362 Fumarate lyase family Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00149 Fumarate lyase superfamily signature 237 264 1.4E-30 T 31-10-2018 IPR000362 Fumarate lyase family Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Gene3D G3DSA:1.10.40.30 368 438 8.5E-150 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Pfam PF00206 Lyase 12 306 9.0E-78 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Gene3D G3DSA:1.10.275.50 5 112 1.0E-40 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 458 1.9E-193 T 31-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Hamap MF_00006 Argininosuccinate lyase [argH]. 8 459 43.974 T 31-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 107 129 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 335 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 237 261 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 148 168 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 281 297 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 PRINTS PR00145 Argininosuccinate lyase family signature 199 215 2.1E-69 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Gene3D G3DSA:1.20.200.10 113 451 8.5E-150 T 31-10-2018 Y89_5952 a9bb759cc3f9f4ab6854b1ab647b6e68 464 Pfam PF14698 Argininosuccinate lyase C-terminal 369 437 7.6E-26 T 31-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 152 164 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 52 61 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 124 138 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 124 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 242 252 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 174 186 4.3E-24 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 56 252 3.3E-88 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 Pfam PF00813 FliP family 56 248 3.6E-79 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 181 196 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 229 241 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 226 251 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 73 93 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 112 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 202 223 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 54 73 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3893 b8a9e68b9048143ed814069d943db17f 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 181 201 2.1E-66 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 2.9E-37 T 31-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 8.9E-45 T 31-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 SUPERFAMILY SSF54843 1 109 6.8E-42 T 31-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.804 T 31-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 Gene3D G3DSA:3.90.470.10 1 110 1.3E-44 T 31-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Y89_0764 d9dac43286d48fa21d0b5cdb26095755 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 31-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_5150 062662fe265578eecb8a19550d55caa5 320 Pfam PF00849 RNA pseudouridylate synthase 91 241 2.9E-32 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5150 062662fe265578eecb8a19550d55caa5 320 Pfam PF01479 S4 domain 18 63 5.3E-7 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_5150 062662fe265578eecb8a19550d55caa5 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 311 1.4E-95 T 31-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5150 062662fe265578eecb8a19550d55caa5 320 SUPERFAMILY SSF55174 17 104 8.41E-8 T 31-10-2018 Y89_5150 062662fe265578eecb8a19550d55caa5 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_5150 062662fe265578eecb8a19550d55caa5 320 Gene3D G3DSA:3.10.290.10 3 73 2.6E-15 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_5150 062662fe265578eecb8a19550d55caa5 320 Gene3D G3DSA:3.30.2350.10 83 315 2.3E-73 T 31-10-2018 Y89_5150 062662fe265578eecb8a19550d55caa5 320 SUPERFAMILY SSF55120 75 314 1.01E-80 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 86 2.4E-4 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 PIRSF PIRSF016578 2 383 6.7E-30 T 31-10-2018 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 SUPERFAMILY SSF47203 246 381 9.02E-20 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Gene3D G3DSA:1.20.140.10 231 383 2.2E-21 T 31-10-2018 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 140 216 4.3E-9 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 SUPERFAMILY SSF56645 18 225 7.46E-42 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 257 366 1.5E-8 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Gene3D G3DSA:1.10.540.10 5 115 5.5E-20 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2491 ccf4e9c7caf9be462b5678d96fea3bea 383 Gene3D G3DSA:2.40.110.10 139 230 2.6E-22 T 31-10-2018 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 PIRSF PIRSF000412 1 415 9.4E-168 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 Pfam PF00464 Serine hydroxymethyltransferase 10 386 1.5E-181 T 31-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.2 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 Gene3D G3DSA:3.90.1150.10 11 394 4.2E-186 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 Gene3D G3DSA:3.40.640.10 37 289 4.2E-186 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 31-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_6154 efddef42f452a0db9474495a4a5eaeb3 417 SUPERFAMILY SSF53383 7 416 8.21E-182 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 167 2.1E-46 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 Gene3D G3DSA:1.10.1040.10 168 295 1.6E-29 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 SUPERFAMILY SSF48179 168 292 2.15E-27 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 SUPERFAMILY SSF51735 8 168 5.16E-41 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 289 6.1E-26 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 Gene3D G3DSA:3.40.50.720 5 167 5.8E-51 T 31-10-2018 Y89_1697 3d80ddd978e8267eee4029f79e4023df 296 PIRSF PIRSF000103 4 296 7.2E-69 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_2965 9bea1d6c494c87d33f25bb5849a54093 710 Gene3D G3DSA:2.170.130.10 37 166 2.6E-23 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_2965 9bea1d6c494c87d33f25bb5849a54093 710 Pfam PF00593 TonB dependent receptor 231 706 2.6E-47 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_2965 9bea1d6c494c87d33f25bb5849a54093 710 SUPERFAMILY SSF56935 29 710 3.46E-110 T 31-10-2018 Y89_2965 9bea1d6c494c87d33f25bb5849a54093 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 8.0E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_2965 9bea1d6c494c87d33f25bb5849a54093 710 Gene3D G3DSA:2.40.170.20 186 710 2.8E-84 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0329 79c17e189ecb23314f2a2c1f9fc6f853 209 SMART SM00702 20 199 3.7E-38 T 31-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Y89_0329 79c17e189ecb23314f2a2c1f9fc6f853 209 Gene3D G3DSA:2.60.120.620 8 205 3.3E-55 T 31-10-2018 Y89_0329 79c17e189ecb23314f2a2c1f9fc6f853 209 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 111 199 2.8E-19 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 PIRSF PIRSF016838 64 320 2.0E-23 T 31-10-2018 IPR028349 Protein PafC Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 PIRSF PIRSF016838 1 55 0.051 T 31-10-2018 IPR028349 Protein PafC Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 Gene3D G3DSA:1.10.10.10 6 65 1.5E-11 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 Pfam PF08279 HTH domain 7 62 9.3E-16 T 31-10-2018 IPR013196 Helix-turn-helix, type 11 Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 SUPERFAMILY SSF46785 7 64 1.22E-9 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3872 a01e9cdaa426223722438b1bba5a9dc3 323 Pfam PF13280 WYL domain 142 311 7.6E-33 T 31-10-2018 IPR026881 WYL domain Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 SMART SM00387 416 527 6.0E-31 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 Gene3D G3DSA:3.30.565.10 376 528 3.0E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 SUPERFAMILY SSF55874 365 523 4.19E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 SUPERFAMILY SSF47384 298 372 1.77E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 3.0E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 3.0E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 3.0E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 SMART SM00388 309 375 2.0E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 Pfam PF00512 His Kinase A (phospho-acceptor) domain 310 374 8.4E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 SMART SM00091 196 260 9.1E-4 T 31-10-2018 IPR000014 PAS domain Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 Gene3D G3DSA:1.10.287.130 296 375 9.1E-19 T 31-10-2018 Y89_5153 ebdc937aacf692e71ec18edf6ee8a1fb 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 417 523 1.8E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_0624 880a78a4d0d877605d5824e66e3530d7 149 Pfam PF10772 Protein of unknown function (DUF2597) 7 140 1.2E-64 T 31-10-2018 IPR019708 Bacteriophage HP1, Orf24 Y89_1841 f026b98859d6bba18116eedd66c345e0 311 Hamap MF_00737 Formimidoylglutamase [hutG]. 5 311 43.223 T 31-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Y89_1841 f026b98859d6bba18116eedd66c345e0 311 PIRSF PIRSF036979 19 311 3.3E-27 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_1841 f026b98859d6bba18116eedd66c345e0 311 SUPERFAMILY SSF52768 9 309 3.42E-79 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_1841 f026b98859d6bba18116eedd66c345e0 311 Gene3D G3DSA:3.40.800.10 4 311 6.2E-112 T 31-10-2018 Y89_1841 f026b98859d6bba18116eedd66c345e0 311 TIGRFAM TIGR01227 hutG: formimidoylglutamase 10 311 3.8E-119 T 31-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Y89_1841 f026b98859d6bba18116eedd66c345e0 311 Pfam PF00491 Arginase family 40 308 2.6E-61 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_0064 f0ac3de69701403fd6ed378fbf8732a7 182 Gene3D G3DSA:3.20.170.30 99 182 3.7E-28 T 31-10-2018 Y89_0064 f0ac3de69701403fd6ed378fbf8732a7 182 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 5 179 34.26 T 31-10-2018 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 Y89_0064 f0ac3de69701403fd6ed378fbf8732a7 182 Gene3D G3DSA:1.10.10.970 7 78 1.7E-16 T 31-10-2018 Y89_0064 f0ac3de69701403fd6ed378fbf8732a7 182 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 8 172 3.1E-36 T 31-10-2018 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 Y89_0064 f0ac3de69701403fd6ed378fbf8732a7 182 SUPERFAMILY SSF56399 9 179 3.74E-55 T 31-10-2018 Y89_2160 47944d01f8053c6e496f63bc1403ab58 311 Gene3D G3DSA:3.40.50.1820 27 311 4.2E-95 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2160 47944d01f8053c6e496f63bc1403ab58 311 Pfam PF00561 alpha/beta hydrolase fold 35 280 7.4E-26 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2160 47944d01f8053c6e496f63bc1403ab58 311 SUPERFAMILY SSF53474 29 307 2.54E-54 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4545 5fb8dfb1a0283d129ebebe7fb96e68d7 431 Pfam PF05853 beta-keto acid cleavage enzyme 44 136 2.6E-6 T 31-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 Y89_4545 5fb8dfb1a0283d129ebebe7fb96e68d7 431 Gene3D G3DSA:3.20.20.70 34 176 7.6E-7 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2345 8f2936be6432c478707d265b7704f172 425 Pfam PF03743 Bacterial conjugation TrbI-like protein 231 411 2.1E-56 T 31-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Y89_2345 8f2936be6432c478707d265b7704f172 425 Gene3D G3DSA:2.40.128.260 233 409 3.9E-52 T 31-10-2018 Y89_2345 8f2936be6432c478707d265b7704f172 425 Gene3D G3DSA:1.10.1200.160 357 390 3.9E-52 T 31-10-2018 Y89_0472 6df54a827289e6f8c9333cbd556dee7e 443 Gene3D G3DSA:2.40.50.140 371 440 1.5E-8 T 31-10-2018 Y89_0472 6df54a827289e6f8c9333cbd556dee7e 443 Pfam PF01957 NfeD-like C-terminal, partner-binding 298 436 3.4E-32 T 31-10-2018 IPR002810 NfeD-like, C-terminal domain Y89_0472 6df54a827289e6f8c9333cbd556dee7e 443 SUPERFAMILY SSF141322 370 436 9.94E-8 T 31-10-2018 Y89_0472 6df54a827289e6f8c9333cbd556dee7e 443 SUPERFAMILY SSF52096 25 194 1.57E-26 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_0472 6df54a827289e6f8c9333cbd556dee7e 443 Gene3D G3DSA:3.90.226.10 19 247 2.1E-61 T 31-10-2018 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 SMART SM00829 15 327 1.5E-8 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 Gene3D G3DSA:3.40.50.720 129 297 2.0E-118 T 31-10-2018 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 Gene3D G3DSA:3.90.180.10 20 327 2.0E-118 T 31-10-2018 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 90 9.3E-6 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 Pfam PF00107 Zinc-binding dehydrogenase 162 271 2.7E-12 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_3496 c94b9267dc9fa948310468861dae90a5 330 SUPERFAMILY SSF50129 8 147 2.59E-40 T 31-10-2018 IPR011032 GroES-like superfamily Y89_3496 c94b9267dc9fa948310468861dae90a5 330 SUPERFAMILY SSF51735 119 296 1.65E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3496 c94b9267dc9fa948310468861dae90a5 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 329 2.3E-138 T 31-10-2018 IPR014188 Acrylyl-CoA reductase AcuI Y89_4217 8404c08c281530fea8d15a07d08fb7c9 291 Hamap MF_01046 Protein/nucleic acid deglycase HchA [hchA]. 3 291 68.015 T 31-10-2018 IPR017283 Protein/nucleic acid deglycase HchA GO:0036524 Y89_4217 8404c08c281530fea8d15a07d08fb7c9 291 Gene3D G3DSA:3.40.50.880 6 289 3.8E-78 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4217 8404c08c281530fea8d15a07d08fb7c9 291 Pfam PF01965 DJ-1/PfpI family 77 196 3.6E-7 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_4217 8404c08c281530fea8d15a07d08fb7c9 291 SUPERFAMILY SSF52317 50 285 1.15E-52 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4217 8404c08c281530fea8d15a07d08fb7c9 291 PIRSF PIRSF037798 1 291 8.8E-167 T 31-10-2018 IPR017283 Protein/nucleic acid deglycase HchA GO:0036524 Y89_5318 a756e18a11dfa3fecfef7b8bfee52914 255 Gene3D G3DSA:3.40.50.300 1 255 3.1E-64 T 31-10-2018 Y89_5318 a756e18a11dfa3fecfef7b8bfee52914 255 Pfam PF00005 ABC transporter 17 167 1.6E-24 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5318 a756e18a11dfa3fecfef7b8bfee52914 255 SUPERFAMILY SSF52540 2 227 3.69E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5318 a756e18a11dfa3fecfef7b8bfee52914 255 SMART SM00382 26 214 5.0E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 Pfam PF01553 Acyltransferase 443 570 1.5E-23 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 SMART SM00563 457 573 3.5E-28 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 SUPERFAMILY SSF69593 385 573 2.62E-28 T 31-10-2018 Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 Pfam PF07690 Major Facilitator Superfamily 19 387 8.6E-17 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 Gene3D G3DSA:1.20.1250.20 11 421 1.3E-25 T 31-10-2018 Y89_1745 7ce95685ade5cbb40c301623aeb2384b 624 SUPERFAMILY SSF103473 12 426 2.49E-26 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 Gene3D G3DSA:3.30.300.30 470 572 4.2E-14 T 31-10-2018 Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 Pfam PF13193 AMP-binding enzyme C-terminal domain 484 560 2.0E-10 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 Pfam PF00501 AMP-binding enzyme 48 475 1.9E-57 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 SUPERFAMILY SSF56801 18 572 2.49E-96 T 31-10-2018 Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 215 226 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2129 7ed3da71f143760ce0db5adcc0c1f6ae 608 Gene3D G3DSA:3.40.50.12780 39 468 8.4E-63 T 31-10-2018 Y89_1346 d87c58043c0a35be963a147053aeb70f 261 Gene3D G3DSA:3.40.50.150 65 260 2.8E-75 T 31-10-2018 Y89_1346 d87c58043c0a35be963a147053aeb70f 261 Pfam PF04445 Putative SAM-dependent methyltransferase 33 254 1.2E-92 T 31-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 Y89_1346 d87c58043c0a35be963a147053aeb70f 261 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 9 256 40.14 T 31-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 Y89_1346 d87c58043c0a35be963a147053aeb70f 261 SUPERFAMILY SSF53335 14 256 6.47E-75 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1998 918b206da732cd89b2299ce78b26080b 128 Pfam PF07007 Lysozyme inhibitor LprI 37 111 5.6E-14 T 31-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal Y89_1998 918b206da732cd89b2299ce78b26080b 128 Gene3D G3DSA:1.20.1270.180 21 122 5.2E-10 T 31-10-2018 Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:3.40.190.10 94 300 3.5E-45 T 31-10-2018 Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 Pfam PF03466 LysR substrate binding domain 98 301 8.2E-26 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 68 1.9E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 SUPERFAMILY SSF46785 8 87 3.24E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 SUPERFAMILY SSF53850 94 300 2.17E-31 T 31-10-2018 Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:3.40.190.10 178 275 3.5E-45 T 31-10-2018 Y89_0290 5e9dd74c67f394ee77147f3c9045354a 310 Gene3D G3DSA:1.10.10.10 3 91 5.1E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1244 dff421c28fa5f4545b44968abe230655 317 SUPERFAMILY SSF52317 5 194 9.0E-44 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1244 dff421c28fa5f4545b44968abe230655 317 SMART SM00342 229 312 4.4E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1244 dff421c28fa5f4545b44968abe230655 317 Gene3D G3DSA:1.10.10.60 214 317 9.8E-24 T 31-10-2018 Y89_1244 dff421c28fa5f4545b44968abe230655 317 Pfam PF01965 DJ-1/PfpI family 5 173 5.5E-10 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_1244 dff421c28fa5f4545b44968abe230655 317 Pfam PF12833 Helix-turn-helix domain 235 313 8.1E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1244 dff421c28fa5f4545b44968abe230655 317 SUPERFAMILY SSF46689 212 263 2.51E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1244 dff421c28fa5f4545b44968abe230655 317 Gene3D G3DSA:3.40.50.880 1 202 2.9E-49 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_1244 dff421c28fa5f4545b44968abe230655 317 SUPERFAMILY SSF46689 266 315 6.45E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.90.1150.10 455 627 1.6E-67 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 22 143 5.6E-24 T 31-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 SUPERFAMILY SSF53383 149 599 5.39E-113 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 582 1.9E-160 T 31-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 PIRSF PIRSF009393 3 751 7.7E-290 T 31-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.40.50.2300 7 148 3.3E-32 T 31-10-2018 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.40.640.10 149 453 1.3E-97 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Gene3D G3DSA:3.90.100.10 628 751 2.8E-48 T 31-10-2018 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 388 402 - T 31-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 SUPERFAMILY SSF55904 602 751 1.24E-43 T 31-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 Y89_3511 2cabf40104537edbc1bc86dd9cd6c8bc 751 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 607 736 3.6E-49 T 31-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Y89_3407 ec4bffeaae8a195b63d32d3e2c8aa0f4 515 Pfam PF13556 PucR C-terminal helix-turn-helix domain 429 487 1.3E-19 T 31-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Y89_3407 ec4bffeaae8a195b63d32d3e2c8aa0f4 515 Gene3D G3DSA:1.10.10.2840 362 492 2.5E-18 T 31-10-2018 Y89_3407 ec4bffeaae8a195b63d32d3e2c8aa0f4 515 Pfam PF07905 Purine catabolism regulatory protein-like family 8 123 1.5E-31 T 31-10-2018 IPR012914 Purine catabolism PurC-like domain Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 SUPERFAMILY SSF51735 111 279 2.51E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 SUPERFAMILY SSF53223 6 110 1.44E-26 T 31-10-2018 Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 Gene3D G3DSA:3.40.50.10860 11 271 3.1E-79 T 31-10-2018 Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 6 281 27.309 T 31-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 11 98 1.7E-21 T 31-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Y89_0251 c3e390a98d682158a07c69c4f24f1c11 284 Gene3D G3DSA:3.40.50.720 109 249 3.1E-79 T 31-10-2018 Y89_4349 00be410c6beaf36acd661edd03266991 157 Pfam PF00578 AhpC/TSA family 5 133 3.5E-36 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4349 00be410c6beaf36acd661edd03266991 157 SUPERFAMILY SSF52833 3 154 4.56E-51 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4349 00be410c6beaf36acd661edd03266991 157 PIRSF PIRSF000239 1 155 4.8E-29 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_4349 00be410c6beaf36acd661edd03266991 157 Gene3D G3DSA:3.40.30.10 3 154 4.2E-48 T 31-10-2018 Y89_2420 c4db9f81fcfd1f05274f0299be2f8677 117 Pfam PF00816 H-NS histone family 13 105 5.9E-6 T 31-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 TIGRFAM TIGR00109 hemH: ferrochelatase 3 196 1.2E-38 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 Gene3D G3DSA:3.40.50.1400 160 318 1.1E-75 T 31-10-2018 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 SUPERFAMILY SSF53800 3 335 2.94E-87 T 31-10-2018 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 Pfam PF00762 Ferrochelatase 4 332 7.9E-99 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 Gene3D G3DSA:3.40.50.1400 5 332 1.1E-75 T 31-10-2018 Y89_5266 365facb728ccfa2529aa2231dfb2480b 340 Hamap MF_00323 Ferrochelatase [hemH]. 2 337 35.69 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 Gene3D G3DSA:3.40.50.720 13 248 9.3E-49 T 31-10-2018 Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PIRSF PIRSF000126 8 258 1.0E-50 T 31-10-2018 Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 SUPERFAMILY SSF51735 16 241 8.77E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 Pfam PF00106 short chain dehydrogenase 21 208 8.6E-34 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 8.6E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 8.6E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 8.6E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 21 38 8.6E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2530 8605a3076d84491a92ed3a5acf55dd6d 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 8.6E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0804 010ba0279a22bca1e3c7117f225c193c 414 Pfam PF13000 Acetyl-coenzyme A transporter 1 14 93 2.3E-19 T 31-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 Y89_0804 010ba0279a22bca1e3c7117f225c193c 414 Gene3D G3DSA:1.20.1250.20 4 401 4.0E-27 T 31-10-2018 Y89_0804 010ba0279a22bca1e3c7117f225c193c 414 SUPERFAMILY SSF103473 5 399 6.02E-31 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0804 010ba0279a22bca1e3c7117f225c193c 414 TIGRFAM TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family 9 398 1.5E-208 T 31-10-2018 IPR014090 Siderophore transporter, RhtX/FptX family Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 SMART SM00487 33 250 1.5E-30 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 Pfam PF08494 DEAD/H associated 654 856 2.1E-48 T 31-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 Gene3D G3DSA:3.40.50.300 264 405 2.2E-27 T 31-10-2018 Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 SUPERFAMILY SSF52540 45 388 9.07E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 Gene3D G3DSA:3.40.50.300 15 239 2.3E-54 T 31-10-2018 Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 Pfam PF00270 DEAD/DEAH box helicase 38 224 2.2E-25 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 Pfam PF00271 Helicase conserved C-terminal domain 278 384 7.8E-19 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_1740 9c8464bf215fad00e09a00080529c6e9 1449 SMART SM00490 304 388 4.5E-18 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 6.3E-68 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 4.0E-60 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 Gene3D G3DSA:3.30.420.10 2 158 1.9E-48 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 31-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.81 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 SUPERFAMILY SSF53098 3 156 1.74E-50 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.2E-41 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.2E-41 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.2E-41 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.2E-41 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_4390 9a32773c3b60ea9c62c6837fd87285a5 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.2E-41 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Y89_2916 b8268329f6f0aead27643248b137dada 436 Pfam PF01547 Bacterial extracellular solute-binding protein 46 327 3.4E-47 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_2916 b8268329f6f0aead27643248b137dada 436 SUPERFAMILY SSF53850 25 408 5.69E-73 T 31-10-2018 Y89_2916 b8268329f6f0aead27643248b137dada 436 Gene3D G3DSA:3.40.190.10 138 422 9.2E-141 T 31-10-2018 Y89_2916 b8268329f6f0aead27643248b137dada 436 Gene3D G3DSA:3.40.190.10 42 393 9.2E-141 T 31-10-2018 Y89_1047 5b17494f37ff08e952aed89dd77766f4 265 Pfam PF08543 Phosphomethylpyrimidine kinase 17 253 8.1E-70 T 31-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Y89_1047 5b17494f37ff08e952aed89dd77766f4 265 Gene3D G3DSA:3.40.1190.20 1 258 6.3E-76 T 31-10-2018 IPR029056 Ribokinase-like Y89_1047 5b17494f37ff08e952aed89dd77766f4 265 SUPERFAMILY SSF53613 6 255 1.18E-61 T 31-10-2018 IPR029056 Ribokinase-like Y89_3312 a097d21f1311c4379d8d36dfaf40c6eb 300 SUPERFAMILY SSF51569 1 289 5.49E-73 T 31-10-2018 Y89_3312 a097d21f1311c4379d8d36dfaf40c6eb 300 Gene3D G3DSA:3.20.20.70 1 300 1.2E-142 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_3312 a097d21f1311c4379d8d36dfaf40c6eb 300 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 31-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 Y89_3312 a097d21f1311c4379d8d36dfaf40c6eb 300 Pfam PF00682 HMGL-like 6 278 1.7E-53 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Y89_5324 f0dda712c289d3ebfcb59949be44ad94 170 Pfam PF13590 Domain of unknown function (DUF4136) 37 165 1.2E-10 T 31-10-2018 IPR025411 Domain of unknown function DUF4136 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 18 261 34.62 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 Pfam PF01416 tRNA pseudouridine synthase 25 120 1.1E-5 T 31-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 Pfam PF01416 tRNA pseudouridine synthase 160 262 1.9E-31 T 31-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 Gene3D G3DSA:3.30.70.660 123 260 8.6E-50 T 31-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 Gene3D G3DSA:3.30.70.580 15 122 8.0E-37 T 31-10-2018 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 PIRSF PIRSF001430 17 277 4.8E-74 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 19 256 1.5E-66 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1905 c53d4ab4d842854d173d0c59077967fd 285 SUPERFAMILY SSF55120 18 275 4.32E-91 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_0862 02e6d890836f52c53d0a1af136b1ee91 340 Pfam PF01032 FecCD transport family 22 334 1.2E-83 T 31-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Y89_0862 02e6d890836f52c53d0a1af136b1ee91 340 Gene3D G3DSA:1.10.3470.10 8 338 2.0E-86 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_0862 02e6d890836f52c53d0a1af136b1ee91 340 SUPERFAMILY SSF81345 5 334 8.24E-75 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 Gene3D G3DSA:3.40.50.300 2 268 4.3E-82 T 31-10-2018 Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 SMART SM00382 28 211 1.7E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 Pfam PF00005 ABC transporter 20 161 1.2E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 SUPERFAMILY SSF50331 254 327 1.28E-8 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 SUPERFAMILY SSF52540 4 241 4.37E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1760 5a4cbba79107d65bf73f2e808bb522b8 331 Pfam PF08402 TOBE domain 257 327 2.1E-8 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Y89_1793 96469b5bf7e8645067870a53d3b53a3b 299 Pfam PF00892 EamA-like transporter family 147 277 2.6E-21 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1793 96469b5bf7e8645067870a53d3b53a3b 299 Pfam PF00892 EamA-like transporter family 12 135 1.1E-11 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1793 96469b5bf7e8645067870a53d3b53a3b 299 SUPERFAMILY SSF103481 181 282 5.1E-18 T 31-10-2018 Y89_1793 96469b5bf7e8645067870a53d3b53a3b 299 SUPERFAMILY SSF103481 38 136 3.79E-9 T 31-10-2018 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 Pfam PF00121 Triosephosphate isomerase 5 246 1.6E-82 T 31-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 57.286 T 31-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 2.8E-66 T 31-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 31-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 SUPERFAMILY SSF51351 1 248 2.36E-86 T 31-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Y89_5360 07cf39b60741969229bcbc36ef439cd2 251 Gene3D G3DSA:3.20.20.70 1 251 3.9E-89 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1653 38214e46214b72ba87b5ad6548773f04 447 SUPERFAMILY SSF54368 15 107 1.07E-8 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_1653 38214e46214b72ba87b5ad6548773f04 447 Pfam PF00120 Glutamine synthetase, catalytic domain 111 441 1.2E-103 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_1653 38214e46214b72ba87b5ad6548773f04 447 SMART SM01230 109 365 1.1E-101 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_1653 38214e46214b72ba87b5ad6548773f04 447 SUPERFAMILY SSF55931 110 442 6.08E-100 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_1653 38214e46214b72ba87b5ad6548773f04 447 Gene3D G3DSA:3.30.590.10 113 445 4.5E-95 T 31-10-2018 Y89_3078 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Pfam PF08929 Domain of unknown function (DUF1911) 177 284 3.2E-23 T 31-10-2018 IPR015025 Domain of unknown function DUF1911 Y89_3078 73f05f0d5e2df9bbd7d0e3c69aefff45 294 SUPERFAMILY SSF140731 137 291 4.71E-44 T 31-10-2018 IPR028983 PA2201-like, C-terminal Y89_3078 73f05f0d5e2df9bbd7d0e3c69aefff45 294 SUPERFAMILY SSF140486 6 129 4.71E-61 T 31-10-2018 IPR028997 PA2201-like, N-terminal Y89_3078 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Gene3D G3DSA:1.10.3920.10 135 294 1.2E-59 T 31-10-2018 IPR028983 PA2201-like, C-terminal Y89_3078 73f05f0d5e2df9bbd7d0e3c69aefff45 294 Gene3D G3DSA:1.20.1440.70 1 130 4.6E-73 T 31-10-2018 IPR028997 PA2201-like, N-terminal Y89_4771 a371ed7dd446d53e16dd647f48292e2f 296 Pfam PF00892 EamA-like transporter family 3 135 6.1E-21 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_4771 a371ed7dd446d53e16dd647f48292e2f 296 Pfam PF00892 EamA-like transporter family 150 281 1.4E-19 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_4771 a371ed7dd446d53e16dd647f48292e2f 296 SUPERFAMILY SSF103481 185 286 7.59E-15 T 31-10-2018 Y89_4771 a371ed7dd446d53e16dd647f48292e2f 296 SUPERFAMILY SSF103481 36 138 1.44E-10 T 31-10-2018 Y89_4195 0268fb61018da6975f357966a190171b 538 SUPERFAMILY SSF55874 362 531 3.14E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4195 0268fb61018da6975f357966a190171b 538 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 424 530 1.7E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4195 0268fb61018da6975f357966a190171b 538 Gene3D G3DSA:1.10.287.130 260 374 2.9E-28 T 31-10-2018 Y89_4195 0268fb61018da6975f357966a190171b 538 SMART SM00388 308 373 2.2E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4195 0268fb61018da6975f357966a190171b 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 485 1.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4195 0268fb61018da6975f357966a190171b 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 530 1.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4195 0268fb61018da6975f357966a190171b 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 510 1.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4195 0268fb61018da6975f357966a190171b 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 1.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4195 0268fb61018da6975f357966a190171b 538 SUPERFAMILY SSF158472 255 305 8.5E-8 T 31-10-2018 Y89_4195 0268fb61018da6975f357966a190171b 538 Pfam PF00672 HAMP domain 259 304 1.0E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4195 0268fb61018da6975f357966a190171b 538 Gene3D G3DSA:3.30.565.10 378 535 2.8E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4195 0268fb61018da6975f357966a190171b 538 SMART SM00387 422 533 4.9E-32 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4195 0268fb61018da6975f357966a190171b 538 Pfam PF00512 His Kinase A (phospho-acceptor) domain 309 373 1.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4195 0268fb61018da6975f357966a190171b 538 SUPERFAMILY SSF47384 291 373 4.71E-16 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4195 0268fb61018da6975f357966a190171b 538 SMART SM00304 255 307 1.4E-13 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_0707 df948fe8c2380d7e6b201e4b16bcaf51 115 Pfam PF16459 Phage tail assembly chaperone, TAC 4 107 2.2E-22 T 31-10-2018 IPR024410 Phage tail assembly chaperone protein, TAC Y89_5998 78fe736fffec1a0b45590102e2a90355 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 5.2E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 SUPERFAMILY SSF53850 89 275 4.46E-34 T 31-10-2018 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 Pfam PF03466 LysR substrate binding domain 89 267 2.0E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5998 78fe736fffec1a0b45590102e2a90355 296 Gene3D G3DSA:3.40.190.10 89 267 2.8E-34 T 31-10-2018 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 SUPERFAMILY SSF46785 2 105 4.09E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5998 78fe736fffec1a0b45590102e2a90355 296 Gene3D G3DSA:3.40.190.10 160 260 2.8E-34 T 31-10-2018 Y89_5998 78fe736fffec1a0b45590102e2a90355 296 Gene3D G3DSA:1.10.10.10 2 88 5.7E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2507 10c06b70ea6ba99543abf2632270e1c7 84 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 84 9.6E-42 T 31-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 Y89_2507 10c06b70ea6ba99543abf2632270e1c7 84 Gene3D G3DSA:3.30.2310.20 1 84 2.2E-40 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Y89_2507 10c06b70ea6ba99543abf2632270e1c7 84 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 84 1.4E-37 T 31-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 Y89_2507 10c06b70ea6ba99543abf2632270e1c7 84 SUPERFAMILY SSF143011 2 83 2.88E-27 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Y89_3662 2e84e263cda728ad2320477135b56ab5 126 SUPERFAMILY SSF54593 4 119 4.97E-21 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3662 2e84e263cda728ad2320477135b56ab5 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 117 1.8E-8 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_3662 2e84e263cda728ad2320477135b56ab5 126 Gene3D G3DSA:3.10.180.10 4 122 1.7E-23 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_5229 ec313e96fc64c9fecab6baf67d8d30c7 179 SUPERFAMILY SSF54292 4 87 2.1E-17 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_5229 ec313e96fc64c9fecab6baf67d8d30c7 179 SUPERFAMILY SSF47741 99 174 2.22E-19 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_5229 ec313e96fc64c9fecab6baf67d8d30c7 179 Pfam PF01799 [2Fe-2S] binding domain 82 166 9.8E-21 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_5229 ec313e96fc64c9fecab6baf67d8d30c7 179 Gene3D G3DSA:3.30.365.10 1 178 5.4E-44 T 31-10-2018 Y89_5229 ec313e96fc64c9fecab6baf67d8d30c7 179 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 39 80 1.9E-5 T 31-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Y89_2098 dc2101a1773031c354bee6be022e66e7 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 3.0E-26 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2098 dc2101a1773031c354bee6be022e66e7 229 Gene3D G3DSA:1.10.3720.10 2 222 2.5E-52 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2098 dc2101a1773031c354bee6be022e66e7 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 5.4E-18 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_2098 dc2101a1773031c354bee6be022e66e7 229 SUPERFAMILY SSF161098 8 206 1.31E-41 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1390 6846301b4aecd2a86a8fbb98a1f823c5 281 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 275 48.256 T 31-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_1390 6846301b4aecd2a86a8fbb98a1f823c5 281 SUPERFAMILY SSF51569 3 277 1.01E-101 T 31-10-2018 Y89_1390 6846301b4aecd2a86a8fbb98a1f823c5 281 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 273 1.4E-114 T 31-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_1390 6846301b4aecd2a86a8fbb98a1f823c5 281 Pfam PF00793 DAHP synthetase I family 9 273 2.3E-80 T 31-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_1390 6846301b4aecd2a86a8fbb98a1f823c5 281 Gene3D G3DSA:3.20.20.70 1 281 1.4E-98 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 SMART SM00448 13 124 5.3E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 SUPERFAMILY SSF52172 12 171 6.69E-33 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 Gene3D G3DSA:1.10.10.60 130 184 3.0E-24 T 31-10-2018 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 Pfam PF02954 Bacterial regulatory protein, Fis family 148 181 8.0E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 Pfam PF00072 Response regulator receiver domain 16 124 4.7E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 148 165 2.6E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 165 185 2.6E-7 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Y89_4983 42043027a0f2f273f0f41f0d0b676dd9 186 Gene3D G3DSA:3.40.50.2300 8 129 2.8E-29 T 31-10-2018 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 SUPERFAMILY SSF46689 232 282 1.16E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 Gene3D G3DSA:3.40.50.880 25 222 2.5E-43 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 SUPERFAMILY SSF52317 29 214 4.01E-36 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 Pfam PF01965 DJ-1/PfpI family 44 197 1.9E-17 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 Pfam PF12833 Helix-turn-helix domain 254 329 2.4E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 SUPERFAMILY SSF46689 284 330 2.51E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 Gene3D G3DSA:1.10.10.60 227 334 5.4E-30 T 31-10-2018 Y89_0838 fe2fc7d0d61a9d7cd7804a7b2026b3b9 340 SMART SM00342 248 331 3.8E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1005 0e2d91198d8b979fb56724d27aa5180e 209 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 200 9.3E-62 T 31-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Y89_1005 0e2d91198d8b979fb56724d27aa5180e 209 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 36.218 T 31-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Y89_1005 0e2d91198d8b979fb56724d27aa5180e 209 Pfam PF02441 Flavoprotein 6 181 1.1E-24 T 31-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Y89_1005 0e2d91198d8b979fb56724d27aa5180e 209 Gene3D G3DSA:3.40.50.1950 1 209 4.8E-85 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Y89_1005 0e2d91198d8b979fb56724d27aa5180e 209 SUPERFAMILY SSF52507 6 202 1.7E-59 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Y89_2186 616d299b450a78a31edd8c5bf638f4c4 530 Pfam PF07690 Major Facilitator Superfamily 35 429 1.1E-30 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2186 616d299b450a78a31edd8c5bf638f4c4 530 Gene3D G3DSA:1.20.1250.20 215 446 7.8E-8 T 31-10-2018 Y89_2186 616d299b450a78a31edd8c5bf638f4c4 530 Gene3D G3DSA:1.20.1250.20 18 214 9.5E-17 T 31-10-2018 Y89_2186 616d299b450a78a31edd8c5bf638f4c4 530 SUPERFAMILY SSF103473 17 517 8.89E-35 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3761 707247421cfff71a9bf61c9789dbcc66 183 Gene3D G3DSA:3.30.420.10 1 181 2.3E-47 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3761 707247421cfff71a9bf61c9789dbcc66 183 SUPERFAMILY SSF53098 2 178 1.04E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3761 707247421cfff71a9bf61c9789dbcc66 183 SMART SM00479 3 183 7.0E-7 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_3761 707247421cfff71a9bf61c9789dbcc66 183 Pfam PF00929 Exonuclease 5 175 2.3E-18 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_5823 854d5c5189d83865cdfece0e586f7029 360 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 11 124 5.8E-22 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y89_5823 854d5c5189d83865cdfece0e586f7029 360 Gene3D G3DSA:3.30.360.10 134 342 1.1E-122 T 31-10-2018 Y89_5823 854d5c5189d83865cdfece0e586f7029 360 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 144 220 4.0E-10 T 31-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 Y89_5823 854d5c5189d83865cdfece0e586f7029 360 Gene3D G3DSA:3.40.50.720 12 320 1.1E-122 T 31-10-2018 Y89_5823 854d5c5189d83865cdfece0e586f7029 360 SUPERFAMILY SSF51735 10 205 3.46E-44 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2624 e47e58a66be0db60ea4e1896dc05237a 275 Pfam PF13649 Methyltransferase domain 47 136 2.7E-10 T 31-10-2018 Y89_2624 e47e58a66be0db60ea4e1896dc05237a 275 Gene3D G3DSA:1.10.150.290 144 254 5.8E-67 T 31-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 Y89_2624 e47e58a66be0db60ea4e1896dc05237a 275 Gene3D G3DSA:3.40.50.150 21 271 5.8E-67 T 31-10-2018 Y89_2624 e47e58a66be0db60ea4e1896dc05237a 275 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 14 274 45.205 T 31-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 Y89_2624 e47e58a66be0db60ea4e1896dc05237a 275 SUPERFAMILY SSF53335 16 265 2.63E-26 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 Gene3D G3DSA:3.40.50.720 1 252 6.5E-87 T 31-10-2018 Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 SUPERFAMILY SSF51735 2 252 1.21E-83 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 6.0E-73 T 31-10-2018 Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3685 17440cb0f700befcd01f0ead4666fb7f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.4E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 Gene3D G3DSA:1.10.760.10 36 113 1.3E-15 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 31 108 2.9E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 SUPERFAMILY SSF46626 11 112 5.7E-17 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 SUPERFAMILY SSF46626 124 212 1.15E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 Gene3D G3DSA:1.10.760.10 120 213 3.8E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 Pfam PF00034 Cytochrome c 128 213 9.1E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2997 e14a32ecb7f4f8dee1fe188e79c2e959 215 PIRSF PIRSF000005 2 215 1.8E-60 T 31-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y89_0836 c04fe46b304507ae9288f4b269335aaa 439 Gene3D G3DSA:3.50.50.60 38 394 3.4E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0836 c04fe46b304507ae9288f4b269335aaa 439 SUPERFAMILY SSF51905 37 401 6.04E-29 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0836 c04fe46b304507ae9288f4b269335aaa 439 Gene3D G3DSA:3.30.9.10 130 355 3.4E-48 T 31-10-2018 Y89_0836 c04fe46b304507ae9288f4b269335aaa 439 Pfam PF01266 FAD dependent oxidoreductase 37 393 4.0E-37 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_2989 167b5416fc9958ee32d21006f036ce71 591 SUPERFAMILY SSF51905 7 582 1.62E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2989 167b5416fc9958ee32d21006f036ce71 591 Pfam PF00732 GMC oxidoreductase 199 344 8.1E-9 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_2989 167b5416fc9958ee32d21006f036ce71 591 Gene3D G3DSA:3.50.50.60 247 349 1.3E-9 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2989 167b5416fc9958ee32d21006f036ce71 591 Pfam PF05199 GMC oxidoreductase 446 571 1.9E-26 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_2989 167b5416fc9958ee32d21006f036ce71 591 SUPERFAMILY SSF54373 418 494 2.12E-10 T 31-10-2018 Y89_2989 167b5416fc9958ee32d21006f036ce71 591 Gene3D G3DSA:3.50.50.60 2 178 1.4E-9 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2989 167b5416fc9958ee32d21006f036ce71 591 Gene3D G3DSA:3.50.50.60 472 583 1.7E-10 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0579 3b55233038cb452411aba7b0276a03ca 141 SUPERFAMILY SSF54427 1 128 5.02E-31 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_0579 3b55233038cb452411aba7b0276a03ca 141 Pfam PF13474 SnoaL-like domain 8 129 6.9E-19 T 31-10-2018 IPR037401 SnoaL-like domain Y89_0579 3b55233038cb452411aba7b0276a03ca 141 Gene3D G3DSA:3.10.450.50 2 141 2.1E-41 T 31-10-2018 Y89_5204 f648bc3943cb152af916f371de82758d 211 Gene3D G3DSA:1.10.357.10 20 205 8.8E-24 T 31-10-2018 Y89_5204 f648bc3943cb152af916f371de82758d 211 SUPERFAMILY SSF46689 43 101 7.48E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5204 f648bc3943cb152af916f371de82758d 211 SUPERFAMILY SSF48498 102 180 2.7E-8 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_1366 a206324029b85905d2680194b609851f 553 Gene3D G3DSA:1.20.1530.20 1 344 1.1E-11 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_1366 a206324029b85905d2680194b609851f 553 Pfam PF00999 Sodium/hydrogen exchanger family 7 419 4.9E-84 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_1366 a206324029b85905d2680194b609851f 553 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 545 7.6E-127 T 31-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 Y89_4953 a845a9808bd6253b683a15ea92535c19 102 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 1.2E-36 T 31-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Y89_4953 a845a9808bd6253b683a15ea92535c19 102 Gene3D G3DSA:3.30.160.100 1 101 6.1E-37 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like Y89_4953 a845a9808bd6253b683a15ea92535c19 102 SUPERFAMILY SSF69754 1 95 2.09E-35 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like Y89_4953 a845a9808bd6253b683a15ea92535c19 102 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.1E-28 T 31-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Y89_0046 eac88d662b1264200b563951cb8459e8 73 Pfam PF06649 Protein of unknown function (DUF1161) 23 72 2.3E-24 T 31-10-2018 IPR010595 Protein of unknown function DUF1161 Y89_0046 eac88d662b1264200b563951cb8459e8 73 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 73 2.0E-35 T 31-10-2018 IPR010595 Protein of unknown function DUF1161 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 PIRSF PIRSF000103 1 297 4.9E-79 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 Gene3D G3DSA:3.40.50.720 1 164 1.4E-56 T 31-10-2018 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 Gene3D G3DSA:1.10.1040.10 165 298 1.5E-43 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 295 4.3E-147 T 31-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 1.9E-51 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 SUPERFAMILY SSF48179 163 296 3.97E-39 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 SUPERFAMILY SSF51735 2 163 1.04E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1457 36fd34999d48d0cdcb0d2bf6f26301ae 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 294 9.3E-36 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Y89_1213 a8afbd032277a9587e7dfab3f481d1bd 128 Pfam PF01592 NifU-like N terminal domain 2 125 3.5E-58 T 31-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Y89_1213 a8afbd032277a9587e7dfab3f481d1bd 128 Gene3D G3DSA:3.90.1010.10 1 128 2.7E-60 T 31-10-2018 Y89_1213 a8afbd032277a9587e7dfab3f481d1bd 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.5E-69 T 31-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Y89_1213 a8afbd032277a9587e7dfab3f481d1bd 128 SUPERFAMILY SSF82649 1 125 3.66E-49 T 31-10-2018 Y89_0724 4b5237f9907f2f6750c9cc80a66d93f1 278 Gene3D G3DSA:3.20.20.70 2 268 3.3E-101 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0724 4b5237f9907f2f6750c9cc80a66d93f1 278 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 5 265 36.629 T 31-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Y89_0724 4b5237f9907f2f6750c9cc80a66d93f1 278 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 263 4.5E-101 T 31-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Y89_0724 4b5237f9907f2f6750c9cc80a66d93f1 278 SUPERFAMILY SSF51366 14 265 2.0E-86 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_0724 4b5237f9907f2f6750c9cc80a66d93f1 278 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 58 76 - T 31-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 SUPERFAMILY SSF53383 5 347 1.99E-75 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 Gene3D G3DSA:3.40.640.10 38 259 7.9E-108 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 348 1.6E-92 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 31-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 Pfam PF00155 Aminotransferase class I and II 26 347 7.5E-54 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 351 56.17 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Y89_4936 a0adfe82a2668566a638cf4f59a88e54 351 Gene3D G3DSA:3.90.1150.10 20 341 7.9E-108 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 SUPERFAMILY SSF50022 3 110 4.19E-32 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 Pfam PF00355 Rieske [2Fe-2S] domain 7 86 1.8E-17 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 SUPERFAMILY SSF55961 117 343 9.42E-58 T 31-10-2018 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 Gene3D G3DSA:3.30.530.90 131 348 2.0E-67 T 31-10-2018 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 47 69 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_5574 b32b710685b6f0d1441ae0c1d5ac2244 351 Gene3D G3DSA:2.102.10.10 2 130 2.7E-33 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_1302 b2c98b6fd78942ec0740675da7882d3f 230 SUPERFAMILY SSF56024 91 226 4.71E-31 T 31-10-2018 Y89_1302 b2c98b6fd78942ec0740675da7882d3f 230 Gene3D G3DSA:3.30.870.10 38 230 1.5E-53 T 31-10-2018 Y89_1302 b2c98b6fd78942ec0740675da7882d3f 230 Pfam PF13091 PLD-like domain 103 224 4.3E-28 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_3581 b4bc837e5a71b602ed0bbdba8b24bfdc 126 Gene3D G3DSA:3.40.30.10 11 114 1.9E-5 T 31-10-2018 Y89_3581 b4bc837e5a71b602ed0bbdba8b24bfdc 126 SUPERFAMILY SSF52833 4 116 6.16E-16 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2587 75583b27c459d01e2ff446e2a3d06d2f 358 SUPERFAMILY SSF51556 1 352 1.55E-79 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2587 75583b27c459d01e2ff446e2a3d06d2f 358 Pfam PF04909 Amidohydrolase 3 348 4.6E-34 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_2587 75583b27c459d01e2ff446e2a3d06d2f 358 Gene3D G3DSA:3.20.20.140 1 351 3.7E-77 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 346 420 8.1E-25 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 794 25.941 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 264 345 7.0E-19 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 17 90 8.2E-19 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 174 263 9.6E-23 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:2.40.160.50 422 794 4.6E-117 T 31-10-2018 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF01103 Surface antigen 447 794 1.6E-96 T 31-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 23 794 2.0E-266 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 PIRSF PIRSF006076 1 794 2.7E-266 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 92 171 1.8E-13 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 265 343 4.3E-15 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 347 420 1.0E-15 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Pfam PF07244 Surface antigen variable number repeat 175 262 2.3E-17 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Y89_1378 3d9291bd667b3a9c553e47a6b68afc3f 794 Gene3D G3DSA:3.10.20.310 91 172 6.6E-19 T 31-10-2018 Y89_5767 e9aa2548966fcd6db56722d312694896 322 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 34 301 4.3E-66 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_5767 e9aa2548966fcd6db56722d312694896 322 SUPERFAMILY SSF53850 28 317 5.37E-74 T 31-10-2018 Y89_5767 e9aa2548966fcd6db56722d312694896 322 Gene3D G3DSA:3.40.190.100 116 243 2.4E-41 T 31-10-2018 Y89_5767 e9aa2548966fcd6db56722d312694896 322 Gene3D G3DSA:3.40.190.10 35 310 2.4E-41 T 31-10-2018 Y89_5561 d8c23bf70c5b3958bbc6a9bd706075af 223 PIRSF PIRSF009467 1 223 3.4E-57 T 31-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y89_5561 d8c23bf70c5b3958bbc6a9bd706075af 223 Pfam PF01730 UreF 35 181 4.0E-35 T 31-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y89_5561 d8c23bf70c5b3958bbc6a9bd706075af 223 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 223 29.094 T 31-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 Y89_5561 d8c23bf70c5b3958bbc6a9bd706075af 223 Gene3D G3DSA:1.10.4190.10 1 200 1.2E-49 T 31-10-2018 IPR038277 UreF domain superfamily Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 1.6E-28 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 365 381 1.6E-28 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 1.6E-28 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 413 430 1.6E-28 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 315 327 1.6E-28 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Gene3D G3DSA:1.10.940.10 1 140 2.3E-41 T 31-10-2018 IPR035926 NusB-like superfamily Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Gene3D G3DSA:1.10.287.730 143 169 6.7E-6 T 31-10-2018 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Pfam PF01189 16S rRNA methyltransferase RsmB/F 239 428 7.1E-63 T 31-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 314 325 - T 31-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Gene3D G3DSA:3.40.50.150 228 431 3.0E-62 T 31-10-2018 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Gene3D G3DSA:3.30.70.1170 170 227 6.2E-25 T 31-10-2018 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 Pfam PF01029 NusB family 1 123 2.0E-21 T 31-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 430 7.1E-129 T 31-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 SUPERFAMILY SSF53335 135 431 2.89E-71 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0023 cf450b7dd3d97e4b822eb06fef22df27 434 SUPERFAMILY SSF48013 1 146 4.45E-35 T 31-10-2018 IPR035926 NusB-like superfamily Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 SUPERFAMILY SSF69349 449 631 4.16E-40 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 SUPERFAMILY SSF69255 371 459 6.28E-34 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 Gene3D G3DSA:2.30.110.50 18 328 2.4E-88 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 22 511 1.2E-122 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 Gene3D G3DSA:3.30.1920.30 221 284 2.4E-88 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 SUPERFAMILY SSF69279 191 371 1.58E-41 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 SUPERFAMILY SSF69279 10 184 4.48E-58 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 Pfam PF05954 Phage late control gene D protein (GPD) 29 327 7.8E-79 T 31-10-2018 Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 529 2.4E-203 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 Gene3D G3DSA:2.40.50.230 362 463 3.2E-44 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_1718 7ba20c138d7df03b55d4f080898ec9fc 688 Gene3D G3DSA:3.55.50.10 95 188 2.4E-88 T 31-10-2018 Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 SUPERFAMILY SSF75217 74 239 2.09E-53 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 Pfam PF04452 RNA methyltransferase 19 233 3.7E-70 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 Gene3D G3DSA:2.40.240.20 1 69 6.8E-22 T 31-10-2018 Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 PIRSF PIRSF015601 3 238 5.0E-58 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 Gene3D G3DSA:3.40.1280.10 74 240 1.1E-61 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 SUPERFAMILY SSF88697 3 69 7.46E-16 T 31-10-2018 IPR015947 PUA-like superfamily Y89_0442 8bbe90efb47dcf498a53e77978e5d65d 240 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 19 237 1.2E-61 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 TIGRFAM TIGR01933 hflK: HflK protein 92 353 9.8E-113 T 31-10-2018 IPR010201 HflK GO:0016021 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 226 244 6.5E-7 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 97 119 6.5E-7 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 PRINTS PR00721 Stomatin signature 144 165 6.5E-7 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 Gene3D G3DSA:3.30.479.30 120 252 8.5E-22 T 31-10-2018 Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 SMART SM00244 90 250 2.8E-33 T 31-10-2018 IPR001107 Band 7 domain Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 SUPERFAMILY SSF117892 122 255 9.94E-24 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 Pfam PF12221 Bacterial membrane protein N terminal 1 55 1.8E-15 T 31-10-2018 IPR020980 Menbrane protein HflK, N-terminal Y89_5612 a1a580d99c6ba17d4fe71aa1780294df 400 Pfam PF01145 SPFH domain / Band 7 family 94 265 2.1E-29 T 31-10-2018 IPR001107 Band 7 domain Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 Gene3D G3DSA:3.40.50.1000 111 210 2.7E-38 T 31-10-2018 IPR023214 HAD superfamily Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 SUPERFAMILY SSF56784 30 268 1.44E-35 T 31-10-2018 IPR036412 HAD-like superfamily Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 Pfam PF13242 HAD-hyrolase-like 210 270 6.8E-8 T 31-10-2018 Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 24 259 1.4E-108 T 31-10-2018 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 Pfam PF13344 Haloacid dehalogenase-like hydrolase 34 119 1.4E-9 T 31-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 Gene3D G3DSA:3.40.50.1000 32 257 2.7E-38 T 31-10-2018 IPR023214 HAD superfamily Y89_1140 a43b033e3e307ce9cc6798f9c6e04fbf 299 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 34 259 9.8E-56 T 31-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Y89_3120 caad487142cb84a643d448ebdcc6d6dd 245 Gene3D G3DSA:3.60.10.10 5 244 8.9E-40 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_3120 caad487142cb84a643d448ebdcc6d6dd 245 SUPERFAMILY SSF56219 5 243 7.46E-43 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_3120 caad487142cb84a643d448ebdcc6d6dd 245 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 29 236 1.5E-11 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_0077 c7c21e281c74ef01a575645d552f9853 681 SUPERFAMILY SSF55486 4 675 2.2E-208 T 31-10-2018 Y89_0077 c7c21e281c74ef01a575645d552f9853 681 Pfam PF01432 Peptidase family M3 224 675 1.6E-150 T 31-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Y89_0077 c7c21e281c74ef01a575645d552f9853 681 Gene3D G3DSA:1.10.1370.10 142 608 6.7E-269 T 31-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Y89_0077 c7c21e281c74ef01a575645d552f9853 681 Gene3D G3DSA:1.10.1370.40 14 673 6.7E-269 T 31-10-2018 Y89_1733 424c19d293080793d9eafdb1faf17dda 440 Pfam PF07396 Phosphate-selective porin O and P 58 440 1.5E-108 T 31-10-2018 IPR010870 Phosphate-selective porin O/P Y89_1733 424c19d293080793d9eafdb1faf17dda 440 SUPERFAMILY SSF56935 55 440 1.9E-24 T 31-10-2018 Y89_1733 424c19d293080793d9eafdb1faf17dda 440 Gene3D G3DSA:2.40.160.10 30 440 6.1E-166 T 31-10-2018 IPR023614 Porin domain superfamily Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 SMART SM00421 763 820 4.8E-22 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 SUPERFAMILY SSF46894 756 826 2.69E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 780 796 2.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 766 780 2.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 796 808 2.4E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 ProSitePatterns PS00622 LuxR-type HTH domain signature. 780 807 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 Gene3D G3DSA:1.10.10.10 757 827 3.6E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 SUPERFAMILY SSF48452 427 606 4.88E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 Gene3D G3DSA:1.25.40.10 430 756 1.1E-34 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1587 a954af0287f7cd83fa750d9b6571fe65 827 Pfam PF00196 Bacterial regulatory proteins, luxR family 765 819 3.7E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1859 6b09a78943de0a75709aa84454fbfdfd 384 Gene3D G3DSA:3.40.50.2000 190 356 2.1E-94 T 31-10-2018 Y89_1859 6b09a78943de0a75709aa84454fbfdfd 384 Gene3D G3DSA:3.40.50.2000 4 368 2.1E-94 T 31-10-2018 Y89_1859 6b09a78943de0a75709aa84454fbfdfd 384 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 3 369 3.1E-146 T 31-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Y89_1859 6b09a78943de0a75709aa84454fbfdfd 384 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 369 1.2E-93 T 31-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Y89_1859 6b09a78943de0a75709aa84454fbfdfd 384 SUPERFAMILY SSF53756 3 370 2.69E-98 T 31-10-2018 Y89_3033 0ca0b2388d41985b6127c34678dffa87 399 Pfam PF13556 PucR C-terminal helix-turn-helix domain 332 386 5.3E-14 T 31-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Y89_3033 0ca0b2388d41985b6127c34678dffa87 399 SUPERFAMILY SSF46689 335 365 1.72E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3033 0ca0b2388d41985b6127c34678dffa87 399 Gene3D G3DSA:1.10.10.2840 267 392 9.6E-17 T 31-10-2018 Y89_1176 30b02dc4069e4eef9669956cab010ebe 451 SUPERFAMILY SSF53850 41 319 3.68E-41 T 31-10-2018 Y89_1176 30b02dc4069e4eef9669956cab010ebe 451 Pfam PF16868 NMT1-like family 46 319 2.2E-20 T 31-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y89_1176 30b02dc4069e4eef9669956cab010ebe 451 Gene3D G3DSA:3.40.190.10 46 319 3.1E-35 T 31-10-2018 Y89_1176 30b02dc4069e4eef9669956cab010ebe 451 Gene3D G3DSA:3.40.190.10 122 263 3.1E-35 T 31-10-2018 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF46689 224 274 3.32E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF51215 15 154 9.42E-28 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 Pfam PF12833 Helix-turn-helix domain 194 272 3.7E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 SMART SM00342 188 270 1.7E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 Gene3D G3DSA:1.10.10.60 173 275 7.4E-28 T 31-10-2018 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 Pfam PF02311 AraC-like ligand binding domain 16 148 8.0E-31 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_2105 91a737f9e6a2567b1e3f15b8952f4f86 278 SUPERFAMILY SSF46689 175 222 6.54E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 Gene3D G3DSA:3.40.190.290 95 296 3.8E-21 T 31-10-2018 Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 SUPERFAMILY SSF53850 93 294 4.5E-35 T 31-10-2018 Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.4E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 Gene3D G3DSA:1.10.10.10 7 93 4.9E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 Pfam PF03466 LysR substrate binding domain 92 294 2.5E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3927 1b518ceed133faba4e1c599ba39991b8 297 SUPERFAMILY SSF46785 7 91 6.73E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 250 7.5E-30 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 SMART SM00062 36 258 5.8E-44 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 Gene3D G3DSA:3.40.190.10 128 223 2.4E-50 T 31-10-2018 Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 SUPERFAMILY SSF53850 27 256 3.32E-46 T 31-10-2018 Y89_1166 9e9abd04275fda4e48c3bf14bd7988b1 341 Gene3D G3DSA:3.40.190.10 26 254 2.4E-50 T 31-10-2018 Y89_0562 d486da688892f67fbae13c101a785bc8 128 Pfam PF01124 MAPEG family 3 127 7.0E-22 T 31-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Y89_0562 d486da688892f67fbae13c101a785bc8 128 SUPERFAMILY SSF161084 2 125 9.03E-23 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Y89_0562 d486da688892f67fbae13c101a785bc8 128 Gene3D G3DSA:1.20.120.550 1 128 1.6E-17 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Y89_4212 da8bdb32621162081d376489cc62a711 278 Gene3D G3DSA:2.60.120.10 40 165 2.9E-114 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4212 da8bdb32621162081d376489cc62a711 278 Pfam PF07883 Cupin domain 195 252 1.5E-7 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_4212 da8bdb32621162081d376489cc62a711 278 Pfam PF07883 Cupin domain 72 141 9.4E-13 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_4212 da8bdb32621162081d376489cc62a711 278 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 6 272 6.8E-117 T 31-10-2018 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_4212 da8bdb32621162081d376489cc62a711 278 Gene3D G3DSA:2.60.120.10 27 268 2.9E-114 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_4212 da8bdb32621162081d376489cc62a711 278 SUPERFAMILY SSF51182 10 272 7.89E-86 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2179 861a8ee99392b5ae24f7fa4e2ecedc8f 248 SUPERFAMILY SSF53335 4 196 1.05E-40 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2179 861a8ee99392b5ae24f7fa4e2ecedc8f 248 Pfam PF01564 Spermine/spermidine synthase domain 57 171 1.1E-5 T 31-10-2018 Y89_2179 861a8ee99392b5ae24f7fa4e2ecedc8f 248 Gene3D G3DSA:3.40.50.150 9 233 7.8E-38 T 31-10-2018 Y89_2045 efca1fcab08f17c163428cb281547324 318 SUPERFAMILY SSF55120 91 317 3.68E-59 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_2045 efca1fcab08f17c163428cb281547324 318 SUPERFAMILY SSF55174 22 73 3.34E-8 T 31-10-2018 Y89_2045 efca1fcab08f17c163428cb281547324 318 SMART SM00363 23 82 4.4E-7 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_2045 efca1fcab08f17c163428cb281547324 318 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_2045 efca1fcab08f17c163428cb281547324 318 Pfam PF00849 RNA pseudouridylate synthase 104 253 5.6E-31 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_2045 efca1fcab08f17c163428cb281547324 318 Pfam PF01479 S4 domain 23 69 3.1E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_2045 efca1fcab08f17c163428cb281547324 318 Gene3D G3DSA:3.10.290.10 13 75 1.1E-14 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_2045 efca1fcab08f17c163428cb281547324 318 Gene3D G3DSA:3.30.2350.10 95 318 8.9E-75 T 31-10-2018 Y89_2045 efca1fcab08f17c163428cb281547324 318 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 20 316 6.9E-78 T 31-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 Pfam PF00248 Aldo/keto reductase family 15 260 3.5E-54 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 Gene3D G3DSA:3.20.20.100 1 273 2.0E-95 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 SUPERFAMILY SSF51430 8 263 5.24E-79 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 PRINTS PR00069 Aldo-keto reductase signature 196 220 4.5E-17 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 PRINTS PR00069 Aldo-keto reductase signature 95 113 4.5E-17 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 PRINTS PR00069 Aldo-keto reductase signature 39 63 4.5E-17 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 PRINTS PR00069 Aldo-keto reductase signature 125 142 4.5E-17 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4553 e3ada14e23e33a47a723f48df19065e6 273 PIRSF PIRSF000097 1 261 5.2E-37 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Y89_4584 520abb0d10010bd8c089737ab673336b 322 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 13 320 1.4E-137 T 31-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 Y89_4584 520abb0d10010bd8c089737ab673336b 322 Gene3D G3DSA:3.40.50.150 60 322 3.5E-22 T 31-10-2018 Y89_4584 520abb0d10010bd8c089737ab673336b 322 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 15 321 53.019 T 31-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 Y89_4584 520abb0d10010bd8c089737ab673336b 322 SUPERFAMILY SSF53335 91 322 9.07E-32 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4584 520abb0d10010bd8c089737ab673336b 322 Pfam PF08003 Protein of unknown function (DUF1698) 12 321 3.3E-137 T 31-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 Gene3D G3DSA:1.10.540.10 11 118 3.8E-28 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 SUPERFAMILY SSF56645 5 215 1.01E-41 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 SUPERFAMILY SSF47203 234 390 1.1E-19 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 PIRSF PIRSF016578 1 392 3.9E-30 T 31-10-2018 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 234 369 1.3E-16 T 31-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 Gene3D G3DSA:2.40.110.10 120 216 7.1E-23 T 31-10-2018 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 Gene3D G3DSA:1.20.140.10 222 394 4.8E-57 T 31-10-2018 Y89_2845 dbd9f172c31700a635fce846f0d9200b 394 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 112 7.4E-12 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 Gene3D G3DSA:1.10.439.10 31 188 1.5E-44 T 31-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 Pfam PF01804 Penicillin amidase 56 833 5.0E-197 T 31-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 Gene3D G3DSA:1.10.1400.10 566 718 1.2E-147 T 31-10-2018 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 PIRSF PIRSF001227 17 842 8.9E-165 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 Gene3D G3DSA:3.60.20.10 265 820 1.2E-147 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 Gene3D G3DSA:2.30.120.10 337 418 1.2E-147 T 31-10-2018 Y89_4323 b6abaf2456c02e38367921cc91dd5ca2 847 SUPERFAMILY SSF56235 52 840 1.95E-206 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_1800 15a83e34596151d4dbac5a760790d189 331 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 16 198 2.8E-45 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_1800 15a83e34596151d4dbac5a760790d189 331 Pfam PF12833 Helix-turn-helix domain 247 325 2.1E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1800 15a83e34596151d4dbac5a760790d189 331 SUPERFAMILY SSF46689 277 325 4.93E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1800 15a83e34596151d4dbac5a760790d189 331 SMART SM00342 241 323 2.1E-29 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1800 15a83e34596151d4dbac5a760790d189 331 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 323 5.8E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1800 15a83e34596151d4dbac5a760790d189 331 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 292 307 5.8E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1800 15a83e34596151d4dbac5a760790d189 331 Gene3D G3DSA:1.10.10.60 220 330 1.4E-27 T 31-10-2018 Y89_0168 f415c69555febf633db2d5733a5d776d 279 Gene3D G3DSA:3.30.450.40 100 279 1.1E-55 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0168 f415c69555febf633db2d5733a5d776d 279 SUPERFAMILY SSF46785 34 105 4.76E-11 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0168 f415c69555febf633db2d5733a5d776d 279 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 30 276 1.6E-101 T 31-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 Y89_0168 f415c69555febf633db2d5733a5d776d 279 SMART SM00346 33 121 3.0E-33 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_0168 f415c69555febf633db2d5733a5d776d 279 SUPERFAMILY SSF55781 98 277 4.56E-49 T 31-10-2018 Y89_0168 f415c69555febf633db2d5733a5d776d 279 Pfam PF01614 Bacterial transcriptional regulator 151 275 3.0E-37 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_0168 f415c69555febf633db2d5733a5d776d 279 Pfam PF09339 IclR helix-turn-helix domain 35 86 2.2E-14 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_0168 f415c69555febf633db2d5733a5d776d 279 Gene3D G3DSA:1.10.10.10 20 99 4.0E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3771 a8f96657dbb08f5ce2906e6c0198cc0d 436 Pfam PF01266 FAD dependent oxidoreductase 38 391 4.6E-51 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3771 a8f96657dbb08f5ce2906e6c0198cc0d 436 SUPERFAMILY SSF51905 37 413 1.34E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3771 a8f96657dbb08f5ce2906e6c0198cc0d 436 Gene3D G3DSA:3.30.9.10 133 354 7.6E-67 T 31-10-2018 Y89_3771 a8f96657dbb08f5ce2906e6c0198cc0d 436 Gene3D G3DSA:3.50.50.60 38 392 7.6E-67 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 SUPERFAMILY SSF56024 45 239 2.69E-42 T 31-10-2018 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 Pfam PF13091 PLD-like domain 68 219 1.4E-20 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 Pfam PF13091 PLD-like domain 316 454 4.9E-20 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 SUPERFAMILY SSF56024 272 496 1.21E-31 T 31-10-2018 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 Gene3D G3DSA:3.30.870.10 285 469 1.2E-33 T 31-10-2018 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 Gene3D G3DSA:3.30.870.10 42 235 2.2E-40 T 31-10-2018 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 SMART SM00155 160 187 1.0E-4 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_6048 ffa75b6079f9f321ec4cbf40a12e27de 517 SMART SM00155 405 432 3.8E-5 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_1988 78cd30d6bfad44c993df279ff032d902 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 72 2.0E-21 T 31-10-2018 IPR010305 Protein of unknown function DUF903 Y89_1988 78cd30d6bfad44c993df279ff032d902 73 Gene3D G3DSA:2.30.30.100 21 73 1.7E-20 T 31-10-2018 Y89_1988 78cd30d6bfad44c993df279ff032d902 73 SUPERFAMILY SSF50182 22 72 2.29E-16 T 31-10-2018 IPR010920 LSM domain superfamily Y89_4674 c46946d7b69b09de4091062484280ff6 250 Pfam PF13462 Thioredoxin 61 207 1.5E-14 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_4674 c46946d7b69b09de4091062484280ff6 250 Gene3D G3DSA:3.40.30.10 60 231 3.6E-34 T 31-10-2018 Y89_4674 c46946d7b69b09de4091062484280ff6 250 SUPERFAMILY SSF52833 58 225 1.32E-28 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF00571 CBS domain 374 423 1.1E-7 T 31-10-2018 IPR000644 CBS domain Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 SUPERFAMILY SSF54631 291 426 3.77E-21 T 31-10-2018 Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 Gene3D G3DSA:3.30.465.10 430 514 8.8E-20 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF03471 Transporter associated domain 439 514 2.3E-18 T 31-10-2018 IPR005170 Transporter-associated domain Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 Gene3D G3DSA:3.10.580.10 283 429 3.4E-33 T 31-10-2018 Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 SMART SM01091 437 515 4.7E-22 T 31-10-2018 IPR005170 Transporter-associated domain Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 Pfam PF03741 Integral membrane protein TerC family 15 203 5.9E-47 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y89_4019 db4ee5ecd03d67e62aa5ed0471330c59 515 SUPERFAMILY SSF56176 438 514 3.0E-18 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_3117 41e585346795f233936b277ae92f32cf 138 SMART SM00116 74 122 0.0016 T 31-10-2018 IPR000644 CBS domain Y89_3117 41e585346795f233936b277ae92f32cf 138 SMART SM00116 10 57 0.0019 T 31-10-2018 IPR000644 CBS domain Y89_3117 41e585346795f233936b277ae92f32cf 138 Pfam PF00571 CBS domain 3 53 1.2E-10 T 31-10-2018 IPR000644 CBS domain Y89_3117 41e585346795f233936b277ae92f32cf 138 Pfam PF00571 CBS domain 68 119 4.5E-8 T 31-10-2018 IPR000644 CBS domain Y89_3117 41e585346795f233936b277ae92f32cf 138 SUPERFAMILY SSF54631 1 117 8.09E-30 T 31-10-2018 Y89_3117 41e585346795f233936b277ae92f32cf 138 Gene3D G3DSA:3.10.580.10 1 137 4.2E-32 T 31-10-2018 Y89_2563 8c046154cac1561a24a1a8ef32c06b4d 435 SUPERFAMILY SSF51556 9 377 4.76E-76 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2563 8c046154cac1561a24a1a8ef32c06b4d 435 Gene3D G3DSA:3.20.20.140 4 371 1.7E-86 T 31-10-2018 Y89_2563 8c046154cac1561a24a1a8ef32c06b4d 435 Pfam PF04909 Amidohydrolase 79 369 1.1E-23 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.1E-16 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 SUPERFAMILY SSF47203 289 473 6.12E-47 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 SUPERFAMILY SSF56645 38 281 4.06E-55 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 2.5E-21 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Gene3D G3DSA:1.20.140.10 283 450 4.8E-91 T 31-10-2018 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 585 5.2E-35 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Gene3D G3DSA:1.10.540.10 81 161 4.8E-91 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Gene3D G3DSA:2.40.110.10 162 282 4.8E-91 T 31-10-2018 Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 5.2E-12 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_0529 ca266fd96d53dbbb45a02bc9a0a62136 592 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 2.2E-10 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_6350 93157d076fb2020824b5034fd7c55d64 658 Pfam PF00271 Helicase conserved C-terminal domain 495 604 7.1E-13 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_6350 93157d076fb2020824b5034fd7c55d64 658 SMART SM00487 247 415 7.1E-15 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_6350 93157d076fb2020824b5034fd7c55d64 658 Pfam PF00176 SNF2 family N-terminal domain 267 469 1.2E-19 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_6350 93157d076fb2020824b5034fd7c55d64 658 SMART SM00490 521 604 1.5E-12 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_6350 93157d076fb2020824b5034fd7c55d64 658 Gene3D G3DSA:3.40.50.300 487 653 5.1E-44 T 31-10-2018 Y89_6350 93157d076fb2020824b5034fd7c55d64 658 SUPERFAMILY SSF52540 245 440 8.07E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6350 93157d076fb2020824b5034fd7c55d64 658 Gene3D G3DSA:3.40.50.10810 227 463 1.6E-27 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_6350 93157d076fb2020824b5034fd7c55d64 658 SUPERFAMILY SSF52540 346 643 3.08E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00091 81 149 6.1E-6 T 31-10-2018 IPR000014 PAS domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00091 206 272 3.4E-9 T 31-10-2018 IPR000014 PAS domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 327 489 1.9E-40 T 31-10-2018 IPR000160 GGDEF domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 486 5.0E-46 T 31-10-2018 IPR000160 GGDEF domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.450.20 203 329 7.4E-37 T 31-10-2018 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.450.20 78 150 5.8E-19 T 31-10-2018 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00052 501 747 8.1E-121 T 31-10-2018 IPR001633 EAL domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55785 211 318 1.93E-29 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.20.20.450 505 751 4.9E-103 T 31-10-2018 IPR035919 EAL domain superfamily Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55073 336 492 1.57E-48 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00267 320 491 4.0E-61 T 31-10-2018 IPR000160 GGDEF domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:3.30.70.270 330 504 1.1E-58 T 31-10-2018 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF08447 PAS fold 104 192 1.4E-21 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 209 327 3.3E-21 T 31-10-2018 IPR000014 PAS domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 79 197 1.3E-11 T 31-10-2018 IPR000014 PAS domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00989 PAS fold 209 316 1.5E-15 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF141868 506 749 3.66E-88 T 31-10-2018 IPR035919 EAL domain superfamily Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SUPERFAMILY SSF55785 87 199 3.32E-21 T 31-10-2018 IPR035965 PAS domain superfamily Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Gene3D G3DSA:2.10.70.100 154 199 2.0E-12 T 31-10-2018 Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 Pfam PF00563 EAL domain 507 742 8.2E-76 T 31-10-2018 IPR001633 EAL domain Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00086 156 198 8.7E-10 T 31-10-2018 IPR001610 PAC motif Y89_0303 03cd8f3c7fa6348af6625ecc90acd28a 760 SMART SM00086 278 320 3.1E-5 T 31-10-2018 IPR001610 PAC motif Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 Gene3D G3DSA:1.20.120.1600 18 104 1.6E-84 T 31-10-2018 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 200 1.5E-20 T 31-10-2018 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 Gene3D G3DSA:3.40.50.1000 6 221 1.6E-84 T 31-10-2018 IPR023214 HAD superfamily Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 190 203 3.2E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 3.2E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 3.2E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 195 8.4E-13 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 85 200 1.0E-13 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_5970 433ad5a9a73811b2649406efe6b6f179 232 SUPERFAMILY SSF56784 5 229 1.01E-46 T 31-10-2018 IPR036412 HAD-like superfamily Y89_6185 12e951cb4f9451098d1bb1c4af595100 142 Pfam PF00892 EamA-like transporter family 4 139 2.1E-24 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_6185 12e951cb4f9451098d1bb1c4af595100 142 SUPERFAMILY SSF103481 46 141 7.06E-20 T 31-10-2018 Y89_6185 12e951cb4f9451098d1bb1c4af595100 142 Gene3D G3DSA:1.10.3730.20 43 141 6.7E-5 T 31-10-2018 Y89_4738 eb1e66b5c8de0f3f64596cc8b22e696e 568 Pfam PF16930 Putative porin 32 568 1.3E-225 T 31-10-2018 IPR032638 Putative bacterial porin Y89_4738 eb1e66b5c8de0f3f64596cc8b22e696e 568 Gene3D G3DSA:2.40.160.20 193 361 1.2E-6 T 31-10-2018 Y89_4738 eb1e66b5c8de0f3f64596cc8b22e696e 568 SUPERFAMILY SSF56935 128 568 3.48E-12 T 31-10-2018 Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 SUPERFAMILY SSF52540 12 203 1.53E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 PIRSF PIRSF015617 6 203 2.5E-71 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 Gene3D G3DSA:3.40.50.300 11 203 3.7E-65 T 31-10-2018 Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 33 203 6.1E-59 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 29 203 1.3E-68 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Y89_4078 5ceec8146b243e5dbbbd6b02170d9dd4 203 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 26 1.6E-9 T 31-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.5E-15 T 31-10-2018 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-15 T 31-10-2018 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 1.5E-15 T 31-10-2018 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 1.5E-15 T 31-10-2018 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 Gene3D G3DSA:3.50.50.60 5 285 6.8E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 Gene3D G3DSA:1.10.10.1100 331 391 1.1E-11 T 31-10-2018 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 SUPERFAMILY SSF51905 1 304 1.13E-31 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 2.2E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 2.2E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 100 108 2.2E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 2.2E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 Gene3D G3DSA:3.50.50.60 111 243 6.8E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 PIRSF PIRSF037495 1 416 2.4E-104 T 31-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 Y89_4085 667a0711edc850da3e0ad3a32dd8269e 417 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 288 2.3E-19 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_0706 b0e333c8e47add9ec2a09e8eb822d847 164 Pfam PF16460 Phage tail tube, TTP, lambda-like 25 161 8.0E-84 T 31-10-2018 IPR032495 Phage tail tube protein, lambda-like Y89_1532 6f406665b324d8c41983b2acb767056a 286 Pfam PF00892 EamA-like transporter family 139 277 2.8E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1532 6f406665b324d8c41983b2acb767056a 286 Pfam PF00892 EamA-like transporter family 3 128 1.1E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1532 6f406665b324d8c41983b2acb767056a 286 SUPERFAMILY SSF103481 35 131 3.53E-9 T 31-10-2018 Y89_1532 6f406665b324d8c41983b2acb767056a 286 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 274 5.5E-90 T 31-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 Y89_1532 6f406665b324d8c41983b2acb767056a 286 SUPERFAMILY SSF103481 176 282 1.7E-9 T 31-10-2018 Y89_2032 0265ee7715a479146d7bbc4e015131c4 416 Pfam PF12704 MacB-like periplasmic core domain 27 232 1.3E-16 T 31-10-2018 IPR025857 MacB-like periplasmic core domain Y89_2032 0265ee7715a479146d7bbc4e015131c4 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 416 1.3E-161 T 31-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Y89_2032 0265ee7715a479146d7bbc4e015131c4 416 Pfam PF02687 FtsX-like permease family 301 409 4.4E-14 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y89_3787 523296e87c36413c827d03aa1db6acd4 471 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 468 5.7E-27 T 31-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Y89_3787 523296e87c36413c827d03aa1db6acd4 471 Gene3D G3DSA:2.60.40.10 354 468 2.2E-33 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3787 523296e87c36413c827d03aa1db6acd4 471 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 39 468 7.4E-177 T 31-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Y89_3787 523296e87c36413c827d03aa1db6acd4 471 SUPERFAMILY SSF54862 103 352 7.53E-32 T 31-10-2018 Y89_3787 523296e87c36413c827d03aa1db6acd4 471 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_3787 523296e87c36413c827d03aa1db6acd4 471 Pfam PF12801 4Fe-4S binding domain 93 125 1.0E-5 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_3787 523296e87c36413c827d03aa1db6acd4 471 Pfam PF13746 4Fe-4S dicluster domain 217 322 1.2E-45 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_3904 19dee6764ecba737fdd222482394e6c0 385 SUPERFAMILY SSF111369 62 298 9.55E-53 T 31-10-2018 Y89_3904 19dee6764ecba737fdd222482394e6c0 385 Gene3D G3DSA:2.40.30.170 57 301 2.5E-79 T 31-10-2018 Y89_3904 19dee6764ecba737fdd222482394e6c0 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 291 1.4E-18 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_3904 19dee6764ecba737fdd222482394e6c0 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 370 1.1E-73 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_3904 19dee6764ecba737fdd222482394e6c0 385 Gene3D G3DSA:2.40.420.20 302 368 2.5E-79 T 31-10-2018 Y89_3904 19dee6764ecba737fdd222482394e6c0 385 Gene3D G3DSA:2.40.50.100 70 214 2.5E-79 T 31-10-2018 Y89_3904 19dee6764ecba737fdd222482394e6c0 385 Gene3D G3DSA:1.10.287.470 105 178 2.5E-79 T 31-10-2018 Y89_2089 e0f1ffae96f864d303bca40b61a8a0e1 392 Gene3D G3DSA:1.20.1250.20 4 375 2.5E-40 T 31-10-2018 Y89_2089 e0f1ffae96f864d303bca40b61a8a0e1 392 SUPERFAMILY SSF103473 4 379 9.42E-53 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2089 e0f1ffae96f864d303bca40b61a8a0e1 392 Pfam PF07690 Major Facilitator Superfamily 9 340 5.8E-33 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4159 a3f0a3c31e0f1c2d0759d34547a9fc9c 472 Pfam PF13520 Amino acid permease 9 412 3.1E-61 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4159 a3f0a3c31e0f1c2d0759d34547a9fc9c 472 PIRSF PIRSF006060 1 470 1.8E-44 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4159 a3f0a3c31e0f1c2d0759d34547a9fc9c 472 Gene3D G3DSA:1.20.1740.10 3 445 1.9E-50 T 31-10-2018 Y89_4159 a3f0a3c31e0f1c2d0759d34547a9fc9c 472 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 472 9.3E-153 T 31-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 Y89_4046 8967344850938282dbea3a9b16f89329 683 Gene3D G3DSA:3.40.50.1820 16 676 2.6E-241 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4046 8967344850938282dbea3a9b16f89329 683 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 12 402 8.0E-79 T 31-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 Y89_4046 8967344850938282dbea3a9b16f89329 683 SUPERFAMILY SSF50993 2 410 4.71E-86 T 31-10-2018 Y89_4046 8967344850938282dbea3a9b16f89329 683 SUPERFAMILY SSF53474 417 660 1.52E-42 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4046 8967344850938282dbea3a9b16f89329 683 Pfam PF00326 Prolyl oligopeptidase family 466 681 2.9E-69 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Y89_4046 8967344850938282dbea3a9b16f89329 683 Gene3D G3DSA:2.130.10.120 65 404 2.6E-241 T 31-10-2018 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 534 554 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 450 468 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 504 523 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 592 607 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 476 500 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_4046 8967344850938282dbea3a9b16f89329 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 610 632 1.7E-51 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Y89_3728 82451d9b9cfbce02c67044fbd97e4f87 146 Pfam PF01638 HxlR-like helix-turn-helix 20 104 2.8E-19 T 31-10-2018 IPR002577 Helix-turn-helix, HxlR type Y89_3728 82451d9b9cfbce02c67044fbd97e4f87 146 SUPERFAMILY SSF46785 6 143 9.66E-39 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3728 82451d9b9cfbce02c67044fbd97e4f87 146 Gene3D G3DSA:1.10.10.10 2 146 7.1E-42 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5382 acb062b262094ee3000666a2e93a01e9 560 Pfam PF02652 L-lactate permease 16 548 1.4E-203 T 31-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Y89_5382 acb062b262094ee3000666a2e93a01e9 560 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 552 3.4E-221 T 31-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Pfam PF14814 Bifunctional transglycosylase second domain 71 154 6.1E-24 T 31-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Gene3D G3DSA:3.40.710.10 61 719 8.5E-271 T 31-10-2018 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 PIRSF PIRSF002799 1 774 0.0 T 31-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Pfam PF00905 Penicillin binding protein transpeptidase domain 431 659 8.2E-18 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 SUPERFAMILY SSF56601 319 756 4.13E-119 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Pfam PF00912 Transglycosylase 166 336 5.7E-57 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 26 752 0.0 T 31-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Gene3D G3DSA:3.30.2060.10 69 157 8.5E-271 T 31-10-2018 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 Gene3D G3DSA:1.10.3810.10 158 361 8.5E-271 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5312 119a07bb302dff1146511054fb1d5f15 774 SUPERFAMILY SSF53955 163 360 6.75E-66 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_4921 52e8b4b61635dfaa9791524f7549dd69 130 Gene3D G3DSA:3.30.230.10 1 130 2.2E-53 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_4921 52e8b4b61635dfaa9791524f7549dd69 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.1E-46 T 31-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Y89_4921 52e8b4b61635dfaa9791524f7549dd69 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.217 T 31-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Y89_4921 52e8b4b61635dfaa9791524f7549dd69 130 SUPERFAMILY SSF54211 6 130 1.93E-48 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4921 52e8b4b61635dfaa9791524f7549dd69 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 31-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Y89_3875 42e3911d656a96874d25cf873e6b0112 159 SMART SM00260 11 148 5.6E-53 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_3875 42e3911d656a96874d25cf873e6b0112 159 Gene3D G3DSA:2.40.50.180 34 143 1.7E-44 T 31-10-2018 Y89_3875 42e3911d656a96874d25cf873e6b0112 159 SUPERFAMILY SSF50341 11 154 2.88E-42 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_3875 42e3911d656a96874d25cf873e6b0112 159 Gene3D G3DSA:2.30.30.40 17 142 1.7E-44 T 31-10-2018 Y89_3875 42e3911d656a96874d25cf873e6b0112 159 Pfam PF01584 CheW-like domain 15 151 7.2E-40 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_5551 dc28c68c70fa892bcc12b7aed841644e 255 Pfam PF00174 Oxidoreductase molybdopterin binding domain 100 244 1.2E-35 T 31-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y89_5551 dc28c68c70fa892bcc12b7aed841644e 255 Gene3D G3DSA:3.90.420.10 80 254 9.5E-54 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_5551 dc28c68c70fa892bcc12b7aed841644e 255 SUPERFAMILY SSF56524 49 254 3.4E-66 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 SUPERFAMILY SSF53850 22 330 1.26E-88 T 31-10-2018 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 Gene3D G3DSA:3.40.190.10 117 327 3.1E-134 T 31-10-2018 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 20 328 3.5E-141 T 31-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 Pfam PF13531 Bacterial extracellular solute-binding protein 35 282 1.4E-44 T 31-10-2018 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 148 156 - T 31-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 Y89_0301 2eaa629f78fe54de01bfde32abb4fddd 332 Gene3D G3DSA:3.40.190.10 29 297 3.1E-134 T 31-10-2018 Y89_0053 827626182b5afeaf26d3a2a925d28852 417 Pfam PF13194 Domain of unknown function (DUF4010) 184 392 2.9E-61 T 31-10-2018 IPR025105 Domain of unknown function DUF4010 Y89_0053 827626182b5afeaf26d3a2a925d28852 417 Pfam PF02308 MgtC family 11 136 2.0E-18 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 484 1.2E-169 T 31-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.1E-25 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.1E-25 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.1E-25 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.1E-25 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 SUPERFAMILY SSF56322 14 485 1.83E-159 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 Pfam PF00425 chorismate binding enzyme 223 476 2.6E-97 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 Gene3D G3DSA:3.60.120.10 1 492 8.6E-182 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_0683 cf6dcf0ecf69b8da46c6c3a1de303090 492 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 168 1.2E-32 T 31-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 85 105 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 128 149 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 23 43 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 3 22 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 106 126 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PRINTS PR00601 Bacterioferritin signature 44 64 4.2E-42 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 PIRSF PIRSF002560 1 154 2.9E-63 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 3.1E-48 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 Gene3D G3DSA:1.20.1260.10 1 154 9.9E-68 T 31-10-2018 IPR012347 Ferritin-like Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 SUPERFAMILY SSF47240 1 154 1.74E-46 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_0787 1bd2083a5bf30f99273964692f7c5415 154 Pfam PF00210 Ferritin-like domain 8 144 9.6E-38 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y89_5511 ab7f80817cb4d4f02d0fc7e8434435ca 356 PIRSF PIRSF029693 1 356 2.4E-220 T 31-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 Y89_5511 ab7f80817cb4d4f02d0fc7e8434435ca 356 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 34 356 9.2E-163 T 31-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 Y89_0075 b4785111d1a01d49a2552e2696283807 221 SUPERFAMILY SSF56784 7 220 2.76E-55 T 31-10-2018 IPR036412 HAD-like superfamily Y89_0075 b4785111d1a01d49a2552e2696283807 221 Gene3D G3DSA:1.10.150.240 22 88 4.0E-63 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_0075 b4785111d1a01d49a2552e2696283807 221 Gene3D G3DSA:3.40.50.1000 11 208 4.0E-63 T 31-10-2018 IPR023214 HAD superfamily Y89_0075 b4785111d1a01d49a2552e2696283807 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 189 1.6E-25 T 31-10-2018 Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 SMART SM00248 29 58 620.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 SMART SM00248 128 157 45.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 SMART SM00248 62 91 0.11 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 SMART SM00248 95 124 34.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 Pfam PF12796 Ankyrin repeats (3 copies) 36 124 3.5E-10 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 SUPERFAMILY SSF48403 33 165 1.87E-29 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_5220 32c86de96b7fe6c7d271b30fb2f6b939 180 Gene3D G3DSA:1.25.40.20 14 171 5.8E-34 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_2444 9c25c3347707446e91623b59f71861ef 182 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 101 112 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_2444 9c25c3347707446e91623b59f71861ef 182 Pfam PF12838 4Fe-4S dicluster domain 61 115 1.3E-11 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_2444 9c25c3347707446e91623b59f71861ef 182 Gene3D G3DSA:3.30.70.3270 35 177 1.1E-42 T 31-10-2018 Y89_2444 9c25c3347707446e91623b59f71861ef 182 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 18 139 1.2E-52 T 31-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2444 9c25c3347707446e91623b59f71861ef 182 SUPERFAMILY SSF54862 35 162 4.18E-29 T 31-10-2018 Y89_2444 9c25c3347707446e91623b59f71861ef 182 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 9 152 27.518 T 31-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 2.7E-41 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 2.7E-41 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 2.7E-41 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 2.7E-41 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 2.7E-41 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 Gene3D G3DSA:3.40.30.80 1 199 7.1E-64 T 31-10-2018 Y89_0153 3c3834566cad59bc055541c166711f2f 521 SUPERFAMILY SSF51905 202 513 1.36E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 5.4E-66 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 SUPERFAMILY SSF52833 1 100 2.57E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0153 3c3834566cad59bc055541c166711f2f 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 516 2.1E-244 T 31-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 Y89_0153 3c3834566cad59bc055541c166711f2f 521 Gene3D G3DSA:3.50.50.60 326 449 5.2E-112 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0153 3c3834566cad59bc055541c166711f2f 521 Pfam PF13192 Thioredoxin domain 124 192 1.8E-8 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_0153 3c3834566cad59bc055541c166711f2f 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 503 3.6E-48 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 PIRSF PIRSF000238 1 520 5.1E-265 T 31-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 Y89_0153 3c3834566cad59bc055541c166711f2f 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 31-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Y89_0153 3c3834566cad59bc055541c166711f2f 521 Gene3D G3DSA:3.50.50.60 212 507 5.2E-112 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0153 3c3834566cad59bc055541c166711f2f 521 SUPERFAMILY SSF52833 103 196 3.21E-23 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1648 07c11bbfd31944e916a9aae7a636e574 115 Gene3D G3DSA:2.60.120.400 2 115 5.1E-48 T 31-10-2018 IPR036684 Calcium-mediated lectin superfamily Y89_1648 07c11bbfd31944e916a9aae7a636e574 115 PIRSF PIRSF029595 1 115 8.0E-65 T 31-10-2018 IPR016927 Lectin, sugar-binding Y89_1648 07c11bbfd31944e916a9aae7a636e574 115 SUPERFAMILY SSF82026 3 115 1.19E-46 T 31-10-2018 IPR036684 Calcium-mediated lectin superfamily Y89_1648 07c11bbfd31944e916a9aae7a636e574 115 Pfam PF07472 Fucose-binding lectin II (PA-IIL) 7 114 3.7E-46 T 31-10-2018 IPR010907 Calcium-mediated lectin Y89_1630 a07d0058369d53f73c8a04c4fd4f03fa 209 Gene3D G3DSA:3.40.50.11310 14 203 2.3E-57 T 31-10-2018 IPR038058 PhnH-like superfamily Y89_1630 a07d0058369d53f73c8a04c4fd4f03fa 209 SUPERFAMILY SSF159709 26 202 6.02E-54 T 31-10-2018 IPR038058 PhnH-like superfamily Y89_1630 a07d0058369d53f73c8a04c4fd4f03fa 209 PIRSF PIRSF020680 10 207 2.3E-63 T 31-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y89_1630 a07d0058369d53f73c8a04c4fd4f03fa 209 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 20 200 1.9E-52 T 31-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y89_1630 a07d0058369d53f73c8a04c4fd4f03fa 209 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 18 201 1.4E-57 T 31-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.2090.10 181 277 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_5206 36679da270af5a918fa6bddd83c12358 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1038 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.70.1440 668 864 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:1.20.1640.10 515 1021 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.70.1430 569 667 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82714 185 274 2.49E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1023 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82693 567 670 4.03E-24 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.70.1430 38 816 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.2090.10 720 808 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 9.0E-100 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82693 148 332 4.24E-21 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82866 298 499 1.05E-49 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82693 38 129 2.09E-23 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82714 721 806 5.36E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:3.30.70.1320 133 334 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 Gene3D G3DSA:1.20.1640.10 8 514 0.0 T 31-10-2018 Y89_5206 36679da270af5a918fa6bddd83c12358 1043 SUPERFAMILY SSF82866 804 1026 4.71E-47 T 31-10-2018 Y89_3800 d03021d059a49093437c3cf4aafd3c57 514 Gene3D G3DSA:3.50.50.60 313 495 4.8E-38 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3800 d03021d059a49093437c3cf4aafd3c57 514 SUPERFAMILY SSF51905 11 237 1.65E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3800 d03021d059a49093437c3cf4aafd3c57 514 Pfam PF00743 Flavin-binding monooxygenase-like 14 216 1.6E-12 T 31-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y89_3800 d03021d059a49093437c3cf4aafd3c57 514 SUPERFAMILY SSF51905 283 486 2.87E-22 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3800 d03021d059a49093437c3cf4aafd3c57 514 Gene3D G3DSA:3.50.50.60 7 173 4.5E-53 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_4834 3c6024e92bd36c7e4d4525ac5c6f6c5e 298 Gene3D G3DSA:2.40.110.10 83 171 6.3E-8 T 31-10-2018 Y89_4834 3c6024e92bd36c7e4d4525ac5c6f6c5e 298 SUPERFAMILY SSF56645 50 165 1.57E-11 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_5129 a3eaa1d1cefcc70b7b19da36655ae5e8 220 Pfam PF13462 Thioredoxin 48 202 2.2E-17 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_5129 a3eaa1d1cefcc70b7b19da36655ae5e8 220 Gene3D G3DSA:3.40.30.10 40 218 1.3E-46 T 31-10-2018 Y89_5129 a3eaa1d1cefcc70b7b19da36655ae5e8 220 SUPERFAMILY SSF52833 24 213 2.75E-29 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_5190 b7097dbba3151ecf017e12e31d51e4c6 404 SUPERFAMILY SSF103365 7 404 6.41E-141 T 31-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_5190 b7097dbba3151ecf017e12e31d51e4c6 404 Gene3D G3DSA:3.90.1860.10 13 404 1.2E-117 T 31-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_5190 b7097dbba3151ecf017e12e31d51e4c6 404 Pfam PF01139 tRNA-splicing ligase RtcB 31 404 7.7E-134 T 31-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_5190 b7097dbba3151ecf017e12e31d51e4c6 404 ProSitePatterns PS01288 Uncharacterized protein family UPF0027 signature. 31 60 - T 31-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Y89_3500 239cf1fe377c66a2cdb229dd9a16da61 356 SUPERFAMILY SSF56112 18 340 3.46E-60 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_3500 239cf1fe377c66a2cdb229dd9a16da61 356 Gene3D G3DSA:3.90.1200.10 118 356 4.4E-67 T 31-10-2018 Y89_3500 239cf1fe377c66a2cdb229dd9a16da61 356 Pfam PF01636 Phosphotransferase enzyme family 38 273 7.2E-50 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_3500 239cf1fe377c66a2cdb229dd9a16da61 356 Gene3D G3DSA:3.30.200.20 15 116 1.5E-30 T 31-10-2018 Y89_5713 9b8519d1f281a0c7930888e75ed8f7bd 174 Pfam PF04351 Pilus assembly protein, PilP 26 170 1.9E-49 T 31-10-2018 IPR007446 Pilus assembly protein PilP Y89_5713 9b8519d1f281a0c7930888e75ed8f7bd 174 Gene3D G3DSA:2.30.30.830 79 171 1.8E-33 T 31-10-2018 Y89_5713 9b8519d1f281a0c7930888e75ed8f7bd 174 PIRSF PIRSF016481 1 174 4.5E-75 T 31-10-2018 IPR007446 Pilus assembly protein PilP Y89_1899 19e7cd6c632270b37615ef16d708edfb 212 Gene3D G3DSA:3.20.19.10 1 188 1.5E-77 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Y89_1899 19e7cd6c632270b37615ef16d708edfb 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 44.554 T 31-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Y89_1899 19e7cd6c632270b37615ef16d708edfb 212 Pfam PF00694 Aconitase C-terminal domain 1 132 2.9E-38 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Y89_1899 19e7cd6c632270b37615ef16d708edfb 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.3E-89 T 31-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Y89_1899 19e7cd6c632270b37615ef16d708edfb 212 SUPERFAMILY SSF52016 1 203 4.12E-63 T 31-10-2018 Y89_1933 14fff67fc2784b2ada72181fd6e31de0 286 Pfam PF01694 Rhomboid family 136 277 6.7E-30 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Y89_1933 14fff67fc2784b2ada72181fd6e31de0 286 Pfam PF16733 Rhomboid N-terminal domain 2 68 2.7E-32 T 31-10-2018 IPR031976 Rhomboid protease, N-terminal Y89_1933 14fff67fc2784b2ada72181fd6e31de0 286 Gene3D G3DSA:1.20.1540.10 82 279 1.6E-46 T 31-10-2018 IPR035952 Rhomboid-like superfamily Y89_1933 14fff67fc2784b2ada72181fd6e31de0 286 Gene3D G3DSA:3.30.70.2080 1 56 9.3E-32 T 31-10-2018 IPR038244 Rhomboid protease, N-terminal domain superfamily Y89_1933 14fff67fc2784b2ada72181fd6e31de0 286 SUPERFAMILY SSF144091 82 285 7.46E-36 T 31-10-2018 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00116 262 310 1.6E-5 T 31-10-2018 IPR000644 CBS domain Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00116 321 367 3.2 T 31-10-2018 IPR000644 CBS domain Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00571 CBS domain 260 307 1.4E-8 T 31-10-2018 IPR000644 CBS domain Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00571 CBS domain 321 367 0.0073 T 31-10-2018 IPR000644 CBS domain Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 Gene3D G3DSA:3.40.50.300 1 256 5.1E-70 T 31-10-2018 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 SUPERFAMILY SSF54631 253 367 6.13E-20 T 31-10-2018 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 367 1.8E-104 T 31-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 Pfam PF00005 ABC transporter 23 168 5.3E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 SMART SM00382 31 226 2.5E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 Gene3D G3DSA:3.10.580.10 257 368 4.0E-16 T 31-10-2018 Y89_1133 c1a30b3a73d976023f80d7c5d51f0f91 387 SUPERFAMILY SSF52540 1 245 2.26E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4733 b424cf23564ef4405f57c65464894521 328 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 36 92 1.5E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4733 b424cf23564ef4405f57c65464894521 328 Gene3D G3DSA:1.10.10.10 32 114 9.6E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4733 b424cf23564ef4405f57c65464894521 328 SUPERFAMILY SSF46785 33 112 1.02E-10 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4733 b424cf23564ef4405f57c65464894521 328 SUPERFAMILY SSF53850 116 322 1.66E-10 T 31-10-2018 Y89_4733 b424cf23564ef4405f57c65464894521 328 Gene3D G3DSA:3.40.190.290 117 318 5.2E-6 T 31-10-2018 Y89_4733 b424cf23564ef4405f57c65464894521 328 Pfam PF03466 LysR substrate binding domain 196 318 4.6E-7 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 297 2.6E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 Gene3D G3DSA:3.30.565.10 305 431 3.7E-11 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 Gene3D G3DSA:1.10.287.130 186 299 2.3E-17 T 31-10-2018 Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 SUPERFAMILY SSF55874 306 427 8.7E-12 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 SMART SM00388 235 299 7.4E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 SUPERFAMILY SSF47384 218 295 1.77E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_1941 48267996ae0a590c2d78a33d0eeb0c8c 431 SMART SM00387 339 430 0.0054 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1500 c215aefc354b29767ec74f0847081903 348 PIRSF PIRSF001237 1 346 2.2E-140 T 31-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_1500 c215aefc354b29767ec74f0847081903 348 Gene3D G3DSA:3.20.20.140 4 344 4.2E-108 T 31-10-2018 Y89_1500 c215aefc354b29767ec74f0847081903 348 SUPERFAMILY SSF51556 3 343 6.43E-147 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_1500 c215aefc354b29767ec74f0847081903 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 12 20 - T 31-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_1500 c215aefc354b29767ec74f0847081903 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 246 257 - T 31-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_1500 c215aefc354b29767ec74f0847081903 348 Hamap MF_00219 Dihydroorotase [pyrC]. 3 344 47.393 T 31-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_1500 c215aefc354b29767ec74f0847081903 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 5 343 3.0E-141 T 31-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Y89_1500 c215aefc354b29767ec74f0847081903 348 Pfam PF01979 Amidohydrolase family 12 310 4.5E-14 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_5489 907a906f2be7fea106cd06c8dd510630 453 Pfam PF01554 MatE 248 406 1.6E-13 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_5489 907a906f2be7fea106cd06c8dd510630 453 Pfam PF01554 MatE 23 181 3.8E-20 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_5489 907a906f2be7fea106cd06c8dd510630 453 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 416 3.3E-71 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_4120 ad202a13b7f4bbfe5dff5e53bee15fc7 85 Pfam PF10976 Protein of unknown function (DUF2790) 11 83 3.1E-25 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_4120 ad202a13b7f4bbfe5dff5e53bee15fc7 85 Gene3D G3DSA:2.30.140.50 17 84 8.3E-22 T 31-10-2018 Y89_6044 528059135d44537a2fb92ac7dc650388 63 Pfam PF13617 YnbE-like lipoprotein 7 61 2.1E-26 T 31-10-2018 IPR025985 YnbE-like lipoprotein Y89_6044 528059135d44537a2fb92ac7dc650388 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 23 63 9.0E-17 T 31-10-2018 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 SUPERFAMILY SSF51161 3 258 3.83E-77 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 256 1.9E-95 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 258 45.218 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Gene3D G3DSA:1.20.1180.10 193 258 1.3E-26 T 31-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Gene3D G3DSA:2.160.10.10 1 192 2.3E-56 T 31-10-2018 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 4 32 - T 31-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 256 4.2E-27 T 31-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 137 1.5E-8 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 32 65 6.3E-6 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_1382 2fb60058c7ebe8acf0b077ae3a64e0a1 258 PIRSF PIRSF000456 1 258 1.2E-99 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Y89_5840 40c36f5dd09c29ba00efa33282719ebe 336 Gene3D G3DSA:3.90.580.10 16 105 4.7E-6 T 31-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Y89_5840 40c36f5dd09c29ba00efa33282719ebe 336 SUPERFAMILY SSF57783 26 100 4.93E-10 T 31-10-2018 Y89_5840 40c36f5dd09c29ba00efa33282719ebe 336 Pfam PF13362 Toprim domain 228 324 1.2E-10 T 31-10-2018 IPR006171 TOPRIM domain Y89_5734 9a074bb9ba9a8da69edd38438975a1d2 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 91 2.0E-36 T 31-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Y89_5734 9a074bb9ba9a8da69edd38438975a1d2 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 4.9E-35 T 31-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.1E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.1E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.1E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.7E-27 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 SUPERFAMILY SSF51735 1 259 9.79E-62 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 259 5.4E-41 T 31-10-2018 Y89_4006 677df835a89afcbd9c2c20a60c0b052e 264 Gene3D G3DSA:3.40.50.720 1 263 6.5E-69 T 31-10-2018 Y89_2193 02a76c47c9db83d9d3ad2d14c3463b27 403 SUPERFAMILY SSF53383 6 401 3.36E-95 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2193 02a76c47c9db83d9d3ad2d14c3463b27 403 Pfam PF00155 Aminotransferase class I and II 35 385 5.2E-48 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_2193 02a76c47c9db83d9d3ad2d14c3463b27 403 Gene3D G3DSA:3.90.1150.10 20 397 9.8E-143 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_2193 02a76c47c9db83d9d3ad2d14c3463b27 403 Gene3D G3DSA:3.40.640.10 52 293 9.8E-143 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 SUPERFAMILY SSF52540 103 372 2.08E-96 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 155 366 6.3E-74 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 Gene3D G3DSA:3.40.50.12240 23 448 6.5E-158 T 31-10-2018 Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 357 366 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 444 1.5E-194 T 31-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 SMART SM00382 167 350 6.9E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4250 3e274bebeef7fe230f9844fbea2dc6cd 451 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 27 446 1.1E-171 T 31-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 SUPERFAMILY SSF52402 211 490 1.14E-17 T 31-10-2018 Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 SUPERFAMILY SSF56235 1 193 9.44E-28 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 PIRSF PIRSF001589 94 531 5.5E-42 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 PIRSF PIRSF001589 1 76 1.9E-6 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 Pfam PF13537 Glutamine amidotransferase domain 97 145 2.0E-13 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 Pfam PF00733 Asparagine synthase 214 525 3.4E-45 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y89_4139 5566c1b6fa704fe3ee89040a0057bd76 532 Gene3D G3DSA:3.60.20.10 90 200 1.5E-18 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4417 cd7de34b169f3e2e40ce607640c0b6b5 77 Gene3D G3DSA:3.40.30.10 1 77 2.3E-20 T 31-10-2018 Y89_4417 cd7de34b169f3e2e40ce607640c0b6b5 77 SUPERFAMILY SSF52833 2 76 3.31E-9 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4417 cd7de34b169f3e2e40ce607640c0b6b5 77 Pfam PF13192 Thioredoxin domain 5 66 3.6E-7 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_4502 82a67d8dedc755dc552c53a719d73350 312 Gene3D G3DSA:3.30.70.100 1 96 1.3E-35 T 31-10-2018 Y89_4502 82a67d8dedc755dc552c53a719d73350 312 Pfam PF00581 Rhodanese-like domain 115 210 5.5E-7 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4502 82a67d8dedc755dc552c53a719d73350 312 SMART SM00450 113 214 7.0E-16 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4502 82a67d8dedc755dc552c53a719d73350 312 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 254 46.668 T 31-10-2018 IPR020936 Uncharacterised protein family UPF0176 Y89_4502 82a67d8dedc755dc552c53a719d73350 312 SUPERFAMILY SSF52821 90 225 3.98E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4502 82a67d8dedc755dc552c53a719d73350 312 Gene3D G3DSA:3.40.250.10 97 249 3.2E-49 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_3310 2ed01410f2503e8f3b389267611e7f8e 265 SUPERFAMILY SSF52096 3 263 4.83E-74 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_3310 2ed01410f2503e8f3b389267611e7f8e 265 Gene3D G3DSA:3.90.226.10 3 205 5.1E-60 T 31-10-2018 Y89_3310 2ed01410f2503e8f3b389267611e7f8e 265 Gene3D G3DSA:1.10.12.10 206 265 5.0E-23 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_3310 2ed01410f2503e8f3b389267611e7f8e 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 263 2.0E-53 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_3310 2ed01410f2503e8f3b389267611e7f8e 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_0659 c70cccf9e28718aeeee1bd968c474fad 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.565 T 31-10-2018 IPR006698 Uncharacterised protein family UPF0229 Y89_0659 c70cccf9e28718aeeee1bd968c474fad 423 Pfam PF04285 Protein of unknown function (DUF444) 4 419 5.0E-180 T 31-10-2018 IPR006698 Uncharacterised protein family UPF0229 Y89_1537 37d32de6f9ab58c576340a51f7bffc39 180 Pfam PF01872 RibD C-terminal domain 93 166 9.3E-14 T 31-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Y89_1537 37d32de6f9ab58c576340a51f7bffc39 180 Gene3D G3DSA:3.40.430.10 5 173 4.0E-46 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_1537 37d32de6f9ab58c576340a51f7bffc39 180 SUPERFAMILY SSF53597 3 174 1.09E-38 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_4601 b960e766486e4f6d00af3d5f5ce7b112 278 Pfam PF08668 HDOD domain 23 207 2.9E-47 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD Y89_4601 b960e766486e4f6d00af3d5f5ce7b112 278 Gene3D G3DSA:1.10.3210.10 4 275 4.5E-63 T 31-10-2018 Y89_4601 b960e766486e4f6d00af3d5f5ce7b112 278 SUPERFAMILY SSF109604 9 252 1.67E-60 T 31-10-2018 Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 241 2.3E-41 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 SUPERFAMILY SSF51735 1 326 7.43E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 3 328 5.6E-131 T 31-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 2 329 48.013 T 31-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 Gene3D G3DSA:3.90.25.10 167 310 4.9E-118 T 31-10-2018 Y89_1672 c5233f4f845eda75678ee70aa13f6b4b 330 Gene3D G3DSA:3.40.50.720 4 322 4.9E-118 T 31-10-2018 Y89_5933 da240b3e0c5d9583556f997737eb00e3 222 Gene3D G3DSA:3.40.50.880 1 222 8.6E-98 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5933 da240b3e0c5d9583556f997737eb00e3 222 PIRSF PIRSF006320 2 217 1.8E-108 T 31-10-2018 IPR026041 Glyoxalase ElbB Y89_5933 da240b3e0c5d9583556f997737eb00e3 222 SUPERFAMILY SSF52317 3 217 1.36E-66 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_5933 da240b3e0c5d9583556f997737eb00e3 222 Pfam PF01965 DJ-1/PfpI family 16 190 2.5E-9 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 5 455 7.9E-179 T 31-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 Gene3D G3DSA:3.90.1150.110 6 451 1.3E-147 T 31-10-2018 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 Pfam PF12390 Selenocysteine synthase N terminal 5 42 1.4E-8 T 31-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 SUPERFAMILY SSF53383 74 375 4.96E-43 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 Gene3D G3DSA:3.40.640.10 91 355 1.3E-147 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 Pfam PF03841 L-seryl-tRNA selenium transferase 79 450 8.8E-170 T 31-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Y89_5420 17752172ac95bcb8fcb19d8cf53c35b6 468 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 466 239.351 T 31-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Y89_6327 1df8d4837a200ba4fcec2f350a975d14 233 Pfam PF10979 Protein of unknown function (DUF2786) 5 44 9.7E-10 T 31-10-2018 IPR024498 Domain of unknown function DUF2786 Y89_6327 1df8d4837a200ba4fcec2f350a975d14 233 PIRSF PIRSF028111 1 231 1.5E-44 T 31-10-2018 IPR016868 Bacteriophage B3, Orf5 Y89_1768 9c92e8fbe408f71485fcfc290bf9bea5 211 Pfam PF00849 RNA pseudouridylate synthase 15 161 4.1E-30 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1768 9c92e8fbe408f71485fcfc290bf9bea5 211 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 53 67 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1768 9c92e8fbe408f71485fcfc290bf9bea5 211 SUPERFAMILY SSF55120 5 210 8.64E-62 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1768 9c92e8fbe408f71485fcfc290bf9bea5 211 Gene3D G3DSA:3.30.2350.10 3 210 1.3E-68 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 SUPERFAMILY SSF69255 371 459 1.65E-32 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 Pfam PF05954 Phage late control gene D protein (GPD) 29 327 2.3E-79 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 SUPERFAMILY SSF69349 449 632 1.49E-39 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 Gene3D G3DSA:2.40.50.230 362 464 5.2E-42 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 Gene3D G3DSA:2.30.110.50 18 328 9.2E-89 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 511 7.7E-117 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 SUPERFAMILY SSF69279 192 371 9.52E-43 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 529 3.3E-199 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 SUPERFAMILY SSF69279 10 185 2.89E-54 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 Gene3D G3DSA:3.30.1920.30 222 284 9.2E-89 T 31-10-2018 Y89_5761 bc06d3e93a2dec9ad7ecfcd5811d3169 790 Gene3D G3DSA:3.55.50.10 95 189 9.2E-89 T 31-10-2018 Y89_4282 5ce1a30d745d10897cafffc27b2c1716 417 Pfam PF11862 Domain of unknown function (DUF3382) 3 105 7.9E-20 T 31-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Y89_4282 5ce1a30d745d10897cafffc27b2c1716 417 Pfam PF02653 Branched-chain amino acid transport system / permease component 114 398 1.1E-51 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_4188 915c4bc930917c89885a34b6c4d4f086 242 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 125 220 2.9E-9 T 31-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Y89_4188 915c4bc930917c89885a34b6c4d4f086 242 SUPERFAMILY SSF56214 123 221 5.41E-13 T 31-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Y89_4188 915c4bc930917c89885a34b6c4d4f086 242 PRINTS PR01399 Enterobactin synthetase component D signature 91 109 6.8E-18 T 31-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 Y89_4188 915c4bc930917c89885a34b6c4d4f086 242 PRINTS PR01399 Enterobactin synthetase component D signature 169 185 6.8E-18 T 31-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 Y89_4188 915c4bc930917c89885a34b6c4d4f086 242 PRINTS PR01399 Enterobactin synthetase component D signature 61 81 6.8E-18 T 31-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 SUPERFAMILY SSF53448 1 281 8.56E-69 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 Gene3D G3DSA:2.60.120.10 347 454 5.3E-20 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 Pfam PF01050 Mannose-6-phosphate isomerase 314 464 6.7E-77 T 31-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1 468 3.2E-233 T 31-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 Gene3D G3DSA:3.90.550.10 1 346 1.3E-118 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 SUPERFAMILY SSF51182 184 469 4.67E-88 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1476 88a3326f25027043d59e8cb7c28f413c 481 Pfam PF00483 Nucleotidyl transferase 3 286 6.0E-77 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_0199 3e7bf2200b1e30bb08ccc08c9d9d3d5e 271 SUPERFAMILY SSF51197 9 253 2.52E-41 T 31-10-2018 Y89_0199 3e7bf2200b1e30bb08ccc08c9d9d3d5e 271 Gene3D G3DSA:3.60.130.10 3 263 6.8E-37 T 31-10-2018 Y89_0199 3e7bf2200b1e30bb08ccc08c9d9d3d5e 271 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 251 6.4E-35 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 28 47 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 311 329 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 332 351 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 73 93 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 139 159 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 1 24 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 177 199 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 216 235 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PRINTS PR00166 Aromatic amino acid permease signature 277 296 7.3E-99 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PIRSF PIRSF006060 1 291 3.4E-9 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 PIRSF PIRSF006060 301 395 2.6 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 1 379 8.8E-149 T 31-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 Gene3D G3DSA:1.20.1740.10 1 395 5.5E-8 T 31-10-2018 Y89_6173 dc77d2ea862d5f48eea23dacd525ae7e 398 Pfam PF03222 Tryptophan/tyrosine permease family 1 386 1.6E-142 T 31-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF55874 265 429 1.57E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 98 429 3.5E-139 T 31-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:3.30.565.10 279 430 1.8E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00388 209 276 4.4E-21 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 275 5.2E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF55785 113 208 1.12E-7 T 31-10-2018 IPR035965 PAS domain superfamily Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:3.30.450.20 104 205 2.7E-8 T 31-10-2018 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 1.2E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF00989 PAS fold 102 156 1.6E-5 T 31-10-2018 IPR013767 PAS fold GO:0006355 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 430 4.2E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Gene3D G3DSA:1.10.287.130 206 276 9.9E-24 T 31-10-2018 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SUPERFAMILY SSF47384 195 276 7.65E-22 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 Pfam PF11808 Domain of unknown function (DUF3329) 9 94 2.2E-28 T 31-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00091 102 170 6.6E-5 T 31-10-2018 IPR000014 PAS domain Y89_6099 a905ba48ac467246d54f7e3c1bfab724 443 SMART SM00387 321 433 2.4E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 SUPERFAMILY SSF53850 25 528 9.62E-147 T 31-10-2018 Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 448 2.2E-96 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.90.76.10 47 205 6.9E-162 T 31-10-2018 Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.40.190.10 206 518 6.9E-162 T 31-10-2018 Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 PIRSF PIRSF002741 16 530 4.1E-104 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_4988 9c6bb7c000a4db6260199b50bfcf4ce8 531 Gene3D G3DSA:3.10.105.10 287 505 6.9E-162 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 Gene3D G3DSA:1.10.287.470 79 184 1.1E-38 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 Gene3D G3DSA:2.40.30.170 220 315 1.1E-38 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 Gene3D G3DSA:2.40.420.20 316 326 1.1E-38 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 Gene3D G3DSA:2.40.50.100 45 219 1.1E-38 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 SUPERFAMILY SSF111369 45 234 1.44E-17 T 31-10-2018 Y89_2769 411d7bbd47e116163a947d9dbc8e4916 334 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 260 7.7E-14 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SUPERFAMILY SSF53901 344 546 2.99E-30 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 182 371 9.1E-13 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 382 496 1.1E-10 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 Gene3D G3DSA:3.40.47.10 144 598 4.2E-85 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SUPERFAMILY SSF53901 154 380 8.3E-30 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_5860 34e1ebf5286dbc9d7a89414ab7a2c7f0 634 SMART SM00825 Beta-ketoacyl synthase 5 549 0.0015 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Y89_2642 fdb6f83beaf7c4825affc16826327d60 347 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 321 6.4E-125 T 31-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 Y89_2642 fdb6f83beaf7c4825affc16826327d60 347 Pfam PF03741 Integral membrane protein TerC family 82 290 2.2E-60 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y89_2144 f6077aa0c1417d2a6060cc1b8a2274b7 213 Pfam PF06041 Bacterial protein of unknown function (DUF924) 45 210 2.8E-49 T 31-10-2018 IPR010323 Protein of unknown function DUF924 Y89_2144 f6077aa0c1417d2a6060cc1b8a2274b7 213 SUPERFAMILY SSF48452 39 209 6.07E-59 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2144 f6077aa0c1417d2a6060cc1b8a2274b7 213 Gene3D G3DSA:1.25.40.10 114 213 5.7E-35 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2144 f6077aa0c1417d2a6060cc1b8a2274b7 213 Gene3D G3DSA:1.20.58.320 35 113 1.7E-24 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 290 1.8E-18 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_2185 0ab300626c6896450c39229260b501d3 354 Pfam PF00529 HlyD membrane-fusion protein of T1SS 291 342 1.0E-7 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_2185 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:2.40.30.170 228 349 3.2E-35 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:1.10.287.470 81 114 5.7E-16 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 330 345 1.1E-5 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_2185 0ab300626c6896450c39229260b501d3 354 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 58 78 1.1E-5 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_2185 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:1.10.287.470 115 189 4.7E-8 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 SUPERFAMILY SSF111369 50 128 4.97E-11 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 Gene3D G3DSA:2.40.50.100 50 80 5.7E-16 T 31-10-2018 Y89_2185 0ab300626c6896450c39229260b501d3 354 SUPERFAMILY SSF111369 183 305 4.71E-13 T 31-10-2018 Y89_1093 bc7153595e936b1b9ccf8d92441a92dd 488 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 439 1.5E-168 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Y89_1093 bc7153595e936b1b9ccf8d92441a92dd 488 PIRSF PIRSF006446 2 464 6.2E-234 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Y89_2574 4005bd0ef80e7c32e66562e4790b45bd 294 SUPERFAMILY SSF56529 56 275 1.1E-59 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_2574 4005bd0ef80e7c32e66562e4790b45bd 294 Gene3D G3DSA:3.90.850.10 65 280 4.2E-62 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_2574 4005bd0ef80e7c32e66562e4790b45bd 294 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 273 1.8E-56 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 PIRSF PIRSF000429 1 394 1.3E-125 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 Gene3D G3DSA:3.40.47.10 4 280 1.4E-142 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 SUPERFAMILY SSF53901 271 391 2.33E-41 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 SUPERFAMILY SSF53901 1 265 7.84E-71 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 Pfam PF00108 Thiolase, N-terminal domain 4 261 3.1E-67 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 9.9E-133 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 Pfam PF02803 Thiolase, C-terminal domain 271 391 2.0E-45 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 Gene3D G3DSA:3.40.47.10 140 386 1.4E-142 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1552 fab6b91682cf7e310b4650b52c66c31f 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 Gene3D G3DSA:1.10.10.10 1 74 8.9E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 Gene3D G3DSA:1.20.120.530 96 254 9.8E-29 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 Pfam PF07729 FCD domain 99 229 6.5E-27 T 31-10-2018 IPR011711 GntR, C-terminal Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 SMART SM00895 99 230 2.6E-21 T 31-10-2018 IPR011711 GntR, C-terminal Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 4.7E-22 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 SUPERFAMILY SSF46785 6 76 1.04E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 SUPERFAMILY SSF48008 96 237 2.62E-26 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 SMART SM00345 15 74 4.9E-25 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 7.5E-11 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_5381 35bcc95d09e1428bcd5b6e800f10d226 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 7.5E-11 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4485 6c0b3d15759ffb390b49e3a16df8e946 88 Pfam PF10976 Protein of unknown function (DUF2790) 8 86 2.9E-34 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_4485 6c0b3d15759ffb390b49e3a16df8e946 88 Gene3D G3DSA:2.30.140.50 20 88 2.7E-31 T 31-10-2018 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 Gene3D G3DSA:2.60.120.10 12 90 6.6E-10 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 249 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 253 5.2E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 222 237 5.2E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 Pfam PF12833 Helix-turn-helix domain 177 254 1.6E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 SUPERFAMILY SSF46689 207 256 2.11E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 SUPERFAMILY SSF51182 5 180 1.53E-18 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 Pfam PF02311 AraC-like ligand binding domain 26 92 5.5E-7 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 SMART SM00342 171 253 5.2E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3736 34f82bc892c104c9fee2e51fadc2b1d3 260 Gene3D G3DSA:1.10.10.60 155 258 9.8E-23 T 31-10-2018 Y89_2178 e9d0d91273d68c9327599a895f0efcea 448 Pfam PF01474 Class-II DAHP synthetase family 5 440 7.2E-208 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_2178 e9d0d91273d68c9327599a895f0efcea 448 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 447 5.2E-223 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_2178 e9d0d91273d68c9327599a895f0efcea 448 Gene3D G3DSA:3.20.20.70 177 445 1.8E-108 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2178 e9d0d91273d68c9327599a895f0efcea 448 SUPERFAMILY SSF51569 2 444 1.1E-205 T 31-10-2018 Y89_5943 bb7aa2146ba547ddfb52fa082a41a253 209 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 22 109 7.0E-6 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 Y89_5943 bb7aa2146ba547ddfb52fa082a41a253 209 SUPERFAMILY SSF54534 22 208 3.93E-37 T 31-10-2018 Y89_5943 bb7aa2146ba547ddfb52fa082a41a253 209 Gene3D G3DSA:3.10.50.40 77 209 7.3E-32 T 31-10-2018 Y89_5943 bb7aa2146ba547ddfb52fa082a41a253 209 Gene3D G3DSA:1.10.287.460 21 76 5.9E-7 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 Y89_5943 bb7aa2146ba547ddfb52fa082a41a253 209 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 127 206 3.2E-18 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 SMART SM00382 140 325 1.2E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF50615 2 72 1.39E-23 T 31-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:2.40.10.170 1 73 1.1E-28 T 31-10-2018 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 1.3E-63 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:3.40.50.300 74 342 3.6E-112 T 31-10-2018 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.229 T 31-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 2.4E-254 T 31-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF52540 75 346 6.71E-92 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 SUPERFAMILY SSF47917 343 457 1.28E-53 T 31-10-2018 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Gene3D G3DSA:1.10.1140.10 343 458 3.1E-59 T 31-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_6294 1dfc8527acf239598835e56fdf7ee8b4 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 3.2E-20 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_1421 7216fd3cc77ea6617415e8ac2f50528d 297 SUPERFAMILY SSF103481 41 144 1.09E-8 T 31-10-2018 Y89_1421 7216fd3cc77ea6617415e8ac2f50528d 297 Pfam PF00892 EamA-like transporter family 8 141 6.8E-18 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1421 7216fd3cc77ea6617415e8ac2f50528d 297 Pfam PF00892 EamA-like transporter family 150 282 1.5E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1421 7216fd3cc77ea6617415e8ac2f50528d 297 SUPERFAMILY SSF103481 191 288 6.41E-12 T 31-10-2018 Y89_4770 f32c4994125703e8730af875ff65003c 227 SUPERFAMILY SSF55681 6 214 3.23E-45 T 31-10-2018 Y89_4770 f32c4994125703e8730af875ff65003c 227 Gene3D G3DSA:3.30.930.10 3 221 1.3E-47 T 31-10-2018 Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 Gene3D G3DSA:3.50.50.60 9 443 1.1E-161 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 SUPERFAMILY SSF51905 191 409 2.27E-6 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 10 357 9.1E-121 T 31-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 7.5E-5 T 31-10-2018 Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 161 179 7.5E-5 T 31-10-2018 Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 209 227 7.5E-5 T 31-10-2018 Y89_2813 6e3d7410de1baef65f573c31b830e05c 443 SUPERFAMILY SSF51905 11 258 1.05E-15 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1256 50b36c1c466542b169c3ed03cd830214 325 SUPERFAMILY SSF46894 251 321 3.16E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_1256 50b36c1c466542b169c3ed03cd830214 325 Pfam PF00196 Bacterial regulatory proteins, luxR family 264 318 1.1E-14 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1256 50b36c1c466542b169c3ed03cd830214 325 Gene3D G3DSA:1.10.10.10 163 323 1.4E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1256 50b36c1c466542b169c3ed03cd830214 325 SMART SM00421 262 319 6.3E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1256 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 279 295 1.7E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1256 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 295 307 1.7E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1256 50b36c1c466542b169c3ed03cd830214 325 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 265 279 1.7E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1245 a70cc30f337e22d86e02d479497b0163 253 Pfam PF01427 D-ala-D-ala dipeptidase 72 223 4.3E-21 T 31-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Y89_1245 a70cc30f337e22d86e02d479497b0163 253 Gene3D G3DSA:3.30.1380.10 46 224 4.1E-47 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Y89_1245 a70cc30f337e22d86e02d479497b0163 253 SUPERFAMILY SSF55166 23 227 6.28E-52 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Y89_1245 a70cc30f337e22d86e02d479497b0163 253 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 23 227 24.655 T 31-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 53.164 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 31-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 Pfam PF00464 Serine hydroxymethyltransferase 9 385 9.4E-183 T 31-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 Gene3D G3DSA:3.90.1150.10 11 393 4.2E-187 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 Gene3D G3DSA:3.40.640.10 37 288 4.2E-187 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 PIRSF PIRSF000412 2 417 4.9E-168 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Y89_5210 41419f0a17d2118e5154ebe144f75cad 417 SUPERFAMILY SSF53383 6 416 4.13E-182 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5747 3a8404d75836b0c609fd317a4130d84d 320 Gene3D G3DSA:1.10.3720.10 114 319 1.7E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5747 3a8404d75836b0c609fd317a4130d84d 320 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 117 211 7.2E-27 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_5747 3a8404d75836b0c609fd317a4130d84d 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 316 3.3E-24 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5747 3a8404d75836b0c609fd317a4130d84d 320 SUPERFAMILY SSF161098 117 302 7.85E-46 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2088 d2256eeddb7659532d0b2ca8b25a1dce 319 SUPERFAMILY SSF53474 31 317 1.43E-63 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2088 d2256eeddb7659532d0b2ca8b25a1dce 319 Pfam PF12697 Alpha/beta hydrolase family 57 302 1.8E-18 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2088 d2256eeddb7659532d0b2ca8b25a1dce 319 Gene3D G3DSA:3.40.50.1820 33 316 8.7E-118 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 Pfam PF03466 LysR substrate binding domain 88 292 8.2E-39 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 Gene3D G3DSA:1.10.10.10 2 91 6.3E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 SUPERFAMILY SSF53850 91 295 3.08E-39 T 31-10-2018 Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.0E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 Gene3D G3DSA:3.40.190.290 92 292 9.3E-57 T 31-10-2018 Y89_4287 47cbbc3c2739ca979fd2f73ca9da7d7c 304 SUPERFAMILY SSF46785 3 87 6.99E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 Gene3D G3DSA:3.40.50.12740 1 208 3.0E-58 T 31-10-2018 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 SMART SM00448 1 114 2.5E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 SUPERFAMILY SSF46894 142 208 1.12E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 SUPERFAMILY SSF52172 1 129 4.55E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 Pfam PF00072 Response regulator receiver domain 3 115 6.3E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.3E-14 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 5.3E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 5.3E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 5.3E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_3343 70bfb6a2a578c25934189d564c5b352b 225 SMART SM00421 145 202 3.6E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 Pfam PF00175 Oxidoreductase NAD-binding domain 112 228 7.4E-8 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 SUPERFAMILY SSF63380 3 99 2.33E-27 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 SUPERFAMILY SSF52343 102 256 1.44E-42 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 Pfam PF00970 Oxidoreductase FAD-binding domain 16 98 4.7E-9 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 Gene3D G3DSA:3.40.50.80 98 258 1.2E-41 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Y89_1612 57e65bbd2cd27181b4c81fc4bfd275af 258 Gene3D G3DSA:2.40.30.10 1 97 1.5E-30 T 31-10-2018 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 Gene3D G3DSA:1.10.10.10 12 90 6.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6170 65aad15bfd490203ea873b848bf1384d 491 SMART SM00345 24 83 5.4E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 SUPERFAMILY SSF53383 119 480 2.56E-86 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_6170 65aad15bfd490203ea873b848bf1384d 491 SUPERFAMILY SSF46785 15 92 2.4E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_6170 65aad15bfd490203ea873b848bf1384d 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 6.5E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 6.5E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 Pfam PF00155 Aminotransferase class I and II 149 417 6.4E-16 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 83 7.9E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_6170 65aad15bfd490203ea873b848bf1384d 491 Gene3D G3DSA:3.40.640.10 114 473 3.8E-121 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2806 64a3e42f3f205e42f8ab30354faf1dfb 452 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 50 438 2.6E-102 T 31-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Y89_2806 64a3e42f3f205e42f8ab30354faf1dfb 452 SUPERFAMILY SSF51556 44 445 7.48E-75 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2806 64a3e42f3f205e42f8ab30354faf1dfb 452 Gene3D G3DSA:1.10.287.650 307 364 4.9E-146 T 31-10-2018 Y89_2806 64a3e42f3f205e42f8ab30354faf1dfb 452 Gene3D G3DSA:3.20.20.140 47 440 4.9E-146 T 31-10-2018 Y89_2700 24d1e3b3bed5331eb79d2cb57cf6fe28 56 Pfam PF11663 Toxin with endonuclease activity, of toxin-antitoxin system 15 54 1.8E-15 T 31-10-2018 IPR021679 Toxin endonuclease, YhaV GO:0004540|GO:0110001 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Pfam PF17092 Penicillin-binding protein OB-like domain 316 421 3.6E-25 T 31-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 SUPERFAMILY SSF56601 211 802 4.27E-130 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Pfam PF00905 Penicillin binding protein transpeptidase domain 428 608 5.1E-24 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Pfam PF00905 Penicillin binding protein transpeptidase domain 649 742 3.5E-6 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Gene3D G3DSA:1.10.3810.10 48 242 2.1E-77 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Gene3D G3DSA:2.40.50.140 316 418 8.5E-39 T 31-10-2018 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 Pfam PF00912 Transglycosylase 55 229 3.9E-65 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 SUPERFAMILY SSF53955 43 255 8.15E-78 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5717 8d8e5ee0bf54fa4328786a00ac97453d 823 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 752 6.6E-188 T 31-10-2018 Y89_1775 d8555fa9663d3f082c0b7a22c249068e 267 Pfam PF04333 MlaA lipoprotein 69 262 1.4E-67 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_1775 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 70 83 9.6E-25 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_1775 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 174 191 9.6E-25 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_1775 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 87 103 9.6E-25 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_1775 d8555fa9663d3f082c0b7a22c249068e 267 PRINTS PR01805 VacJ lipoprotein signature 138 155 9.6E-25 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_4099 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:3.30.60.50 178 225 2.9E-97 T 31-10-2018 Y89_4099 2476316002f63fb0f816fed0beb7d424 334 Pfam PF02615 Malate/L-lactate dehydrogenase 5 329 3.7E-101 T 31-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 Y89_4099 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:1.10.1530.10 11 329 2.9E-97 T 31-10-2018 Y89_4099 2476316002f63fb0f816fed0beb7d424 334 SUPERFAMILY SSF89733 2 333 3.4E-101 T 31-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 Y89_4099 2476316002f63fb0f816fed0beb7d424 334 Gene3D G3DSA:3.30.1370.60 62 302 2.9E-97 T 31-10-2018 Y89_4264 cadd006c6a733949cadffa29559ed097 220 Pfam PF12804 MobA-like NTP transferase domain 7 141 5.8E-15 T 31-10-2018 IPR025877 MobA-like NTP transferase Y89_4264 cadd006c6a733949cadffa29559ed097 220 Gene3D G3DSA:3.90.550.10 4 217 1.0E-26 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4264 cadd006c6a733949cadffa29559ed097 220 SUPERFAMILY SSF53448 6 212 3.96E-28 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1623 0c4e31724d85506eea94216dc1eee823 121 Pfam PF10861 Protein of Unknown function (DUF2784) 4 111 1.3E-40 T 31-10-2018 IPR021218 Protein of unknown function DUF2784 Y89_2180 eac7d88c5b7092bad014ba276a096414 263 Gene3D G3DSA:1.10.12.10 206 263 4.6E-16 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_2180 eac7d88c5b7092bad014ba276a096414 263 Gene3D G3DSA:3.90.226.10 6 205 1.9E-57 T 31-10-2018 Y89_2180 eac7d88c5b7092bad014ba276a096414 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 262 2.4E-37 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2180 eac7d88c5b7092bad014ba276a096414 263 SUPERFAMILY SSF52096 9 263 2.3E-60 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_5161 113f747cd02ad78efc7e6dfe0baeb8a2 1163 Pfam PF05567 Neisseria PilC beta-propeller domain 637 1003 1.2E-222 T 31-10-2018 IPR008707 PilC beta-propeller domain Y89_5161 113f747cd02ad78efc7e6dfe0baeb8a2 1163 SUPERFAMILY SSF50998 672 950 4.12E-12 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Y89_6338 139558e53750212bedc9569d1ec39f17 89 Pfam PF03869 Arc-like DNA binding domain 13 50 3.4E-15 T 31-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Y89_6338 139558e53750212bedc9569d1ec39f17 89 Gene3D G3DSA:1.10.1220.10 1 62 1.7E-20 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Y89_6338 139558e53750212bedc9569d1ec39f17 89 SUPERFAMILY SSF47598 11 52 5.78E-12 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 Gene3D G3DSA:2.30.40.10 29 552 2.9E-115 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 SUPERFAMILY SSF51338 22 577 1.05E-24 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 Pfam PF07969 Amidohydrolase family 71 576 6.5E-75 T 31-10-2018 IPR013108 Amidohydrolase 3 Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 SUPERFAMILY SSF51556 82 536 1.06E-30 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 Gene3D G3DSA:3.10.310.70 101 227 2.9E-115 T 31-10-2018 Y89_2750 4657127988c38bc6e49ee27e95dc0d53 580 Gene3D G3DSA:3.20.20.140 83 535 2.9E-115 T 31-10-2018 Y89_5279 ad32348b69bfa08a6b413f0177c9fbb2 205 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 1 200 27.01 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y89_5279 ad32348b69bfa08a6b413f0177c9fbb2 205 Gene3D G3DSA:2.50.20.10 28 200 3.8E-55 T 31-10-2018 Y89_5279 ad32348b69bfa08a6b413f0177c9fbb2 205 SUPERFAMILY SSF89392 17 200 1.1E-50 T 31-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Y89_5279 ad32348b69bfa08a6b413f0177c9fbb2 205 Pfam PF03550 Outer membrane lipoprotein LolB 48 198 4.8E-49 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y89_5279 ad32348b69bfa08a6b413f0177c9fbb2 205 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 2 200 2.3E-90 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 6.7E-8 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 237 255 6.7E-8 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 81 6.7E-8 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 Pfam PF13433 Periplasmic binding protein domain 10 369 1.3E-114 T 31-10-2018 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 Gene3D G3DSA:3.40.50.2300 10 338 1.5E-137 T 31-10-2018 Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 SUPERFAMILY SSF53822 10 375 6.39E-89 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_1645 7c14f31c1a1b865912a75144a7546e79 385 Gene3D G3DSA:3.40.50.2300 123 358 1.5E-137 T 31-10-2018 Y89_0747 73014e469e112edaed7f6671654e6a13 159 SMART SM00739 105 132 1.4E-7 T 31-10-2018 IPR005824 KOW Y89_0747 73014e469e112edaed7f6671654e6a13 159 Pfam PF00467 KOW motif 108 138 4.2E-9 T 31-10-2018 IPR005824 KOW Y89_0747 73014e469e112edaed7f6671654e6a13 159 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 159 18.155 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y89_0747 73014e469e112edaed7f6671654e6a13 159 Gene3D G3DSA:3.30.70.940 1 99 1.2E-35 T 31-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y89_0747 73014e469e112edaed7f6671654e6a13 159 PRINTS PR00338 Transcription termination factor NUSG signature 39 51 6.7E-20 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y89_0747 73014e469e112edaed7f6671654e6a13 159 PRINTS PR00338 Transcription termination factor NUSG signature 117 132 6.7E-20 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y89_0747 73014e469e112edaed7f6671654e6a13 159 PRINTS PR00338 Transcription termination factor NUSG signature 135 151 6.7E-20 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y89_0747 73014e469e112edaed7f6671654e6a13 159 Pfam PF02357 Transcription termination factor nusG 9 90 3.4E-20 T 31-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y89_0747 73014e469e112edaed7f6671654e6a13 159 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 3 159 1.7E-58 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Y89_0747 73014e469e112edaed7f6671654e6a13 159 ProSitePatterns PS01014 Transcription termination factor nusG signature. 142 151 - T 31-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Y89_0747 73014e469e112edaed7f6671654e6a13 159 SMART SM00738 2 93 8.5E-28 T 31-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y89_0747 73014e469e112edaed7f6671654e6a13 159 Gene3D G3DSA:2.30.30.30 100 159 4.2E-26 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 Y89_0747 73014e469e112edaed7f6671654e6a13 159 SUPERFAMILY SSF50104 103 159 9.03E-20 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily Y89_0747 73014e469e112edaed7f6671654e6a13 159 SUPERFAMILY SSF82679 3 95 7.19E-29 T 31-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 Hamap MF_00492 Transaldolase [tal]. 2 307 50.203 T 31-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 ProSitePatterns PS00958 Transaldolase active site. 122 139 - T 31-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 31-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 TIGRFAM TIGR00874 talAB: transaldolase 4 303 8.9E-134 T 31-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 Gene3D G3DSA:3.20.20.70 1 307 2.2E-129 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 301 1.1E-96 T 31-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Y89_2233 13b24ca852c0702296e3baca83adc9cb 307 SUPERFAMILY SSF51569 1 305 1.15E-109 T 31-10-2018 Y89_2551 d31c46302f71e423ec75f81e703983d4 272 SUPERFAMILY SSF51735 8 250 8.0E-69 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.2E-25 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2551 d31c46302f71e423ec75f81e703983d4 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 3.8E-55 T 31-10-2018 Y89_2551 d31c46302f71e423ec75f81e703983d4 272 Gene3D G3DSA:3.40.50.720 4 267 7.4E-71 T 31-10-2018 Y89_2551 d31c46302f71e423ec75f81e703983d4 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_4870 b5fca3618ab571898d0c1a3e0050e94d 264 Gene3D G3DSA:1.20.144.10 129 255 1.4E-9 T 31-10-2018 Y89_4870 b5fca3618ab571898d0c1a3e0050e94d 264 Pfam PF01569 PAP2 superfamily 100 229 1.2E-14 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_4870 b5fca3618ab571898d0c1a3e0050e94d 264 SUPERFAMILY SSF48317 19 230 3.6E-11 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Y89_1646 d945b1ad4390731b67cfac158af4a177 196 Gene3D G3DSA:1.10.10.10 145 196 2.5E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1646 d945b1ad4390731b67cfac158af4a177 196 Pfam PF03861 ANTAR domain 137 190 3.4E-14 T 31-10-2018 IPR005561 ANTAR domain GO:0003723 Y89_1646 d945b1ad4390731b67cfac158af4a177 196 PIRSF PIRSF036382 2 196 1.2E-51 T 31-10-2018 IPR008327 Signal transduction response regulator, antiterminator Y89_1646 d945b1ad4390731b67cfac158af4a177 196 SUPERFAMILY SSF52172 5 190 8.18E-45 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1646 d945b1ad4390731b67cfac158af4a177 196 Gene3D G3DSA:3.40.50.2300 1 128 4.2E-40 T 31-10-2018 Y89_1646 d945b1ad4390731b67cfac158af4a177 196 SMART SM01012 135 190 3.6E-15 T 31-10-2018 IPR005561 ANTAR domain GO:0003723 Y89_5469 4e286164c0ef25a03d91abe71238cf56 123 Pfam PF01381 Helix-turn-helix 13 56 4.0E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_5469 4e286164c0ef25a03d91abe71238cf56 123 SUPERFAMILY SSF47413 5 56 1.05E-9 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5469 4e286164c0ef25a03d91abe71238cf56 123 SMART SM00530 10 64 1.5E-5 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_5469 4e286164c0ef25a03d91abe71238cf56 123 Gene3D G3DSA:1.10.260.40 4 67 1.6E-9 T 31-10-2018 Y89_1982 82f76790d11faebc10502124b11e0c99 288 Gene3D G3DSA:3.60.15.10 23 285 6.1E-39 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_1982 82f76790d11faebc10502124b11e0c99 288 SMART SM00849 54 272 1.3E-27 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1982 82f76790d11faebc10502124b11e0c99 288 Pfam PF00753 Metallo-beta-lactamase superfamily 51 272 1.6E-27 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1982 82f76790d11faebc10502124b11e0c99 288 SUPERFAMILY SSF56281 48 276 7.21E-34 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4418 a59a9dd5bbf78e07346a951af5daf79f 84 SUPERFAMILY SSF160766 1 84 2.35E-32 T 31-10-2018 IPR023122 NE1680-like superfamily Y89_4418 a59a9dd5bbf78e07346a951af5daf79f 84 Gene3D G3DSA:3.10.510.10 1 84 4.6E-29 T 31-10-2018 IPR023122 NE1680-like superfamily Y89_4418 a59a9dd5bbf78e07346a951af5daf79f 84 Pfam PF09630 Domain of unknown function (DUF2024) 1 80 7.1E-30 T 31-10-2018 IPR018592 Protein of unknown function DUF2024 Y89_2586 9979a694df0e38c540f4ef1404c6cb7c 244 Gene3D G3DSA:1.10.357.10 52 233 9.2E-21 T 31-10-2018 Y89_2586 9979a694df0e38c540f4ef1404c6cb7c 244 Pfam PF00440 Bacterial regulatory proteins, tetR family 62 106 4.9E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2586 9979a694df0e38c540f4ef1404c6cb7c 244 SUPERFAMILY SSF46689 51 118 2.79E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2586 9979a694df0e38c540f4ef1404c6cb7c 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 83 106 6.1E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2586 9979a694df0e38c540f4ef1404c6cb7c 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 62 75 6.1E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1158 b8ca44c9e23ea86ce8a3eadcf2b547f0 667 Gene3D G3DSA:2.170.130.10 47 157 2.6E-22 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_1158 b8ca44c9e23ea86ce8a3eadcf2b547f0 667 SUPERFAMILY SSF56935 44 667 1.62E-82 T 31-10-2018 Y89_1158 b8ca44c9e23ea86ce8a3eadcf2b547f0 667 Pfam PF00593 TonB dependent receptor 219 666 1.2E-28 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_1158 b8ca44c9e23ea86ce8a3eadcf2b547f0 667 Gene3D G3DSA:2.40.170.20 158 667 1.5E-54 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1158 b8ca44c9e23ea86ce8a3eadcf2b547f0 667 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 144 7.7E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4279 d694837fbbe63b9bf5d225acdcfe3ecd 105 Pfam PF10052 Protein of unknown function (DUF2288) 8 97 4.5E-31 T 31-10-2018 IPR018741 Protein of unknown function DUF2288 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:1.20.1580.10 692 830 1.3E-139 T 31-10-2018 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:3.40.50.300 6 595 3.8E-245 T 31-10-2018 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 SUPERFAMILY SSF52540 612 910 1.22E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:3.30.190.20 130 239 3.8E-245 T 31-10-2018 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.869 T 31-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:1.20.1580.10 90 492 3.8E-245 T 31-10-2018 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:3.40.50.300 616 936 1.3E-139 T 31-10-2018 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 925 0.0 T 31-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 SUPERFAMILY SSF52540 7 569 3.29E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0788 e4fbf6862f2289ba6453e4f0807a7c87 945 Gene3D G3DSA:1.10.8.280 288 403 3.8E-245 T 31-10-2018 Y89_3659 15f016a84706a87f90eb0783d3d83d02 185 SUPERFAMILY SSF160443 94 176 1.7E-15 T 31-10-2018 IPR036063 Smr domain superfamily Y89_3659 15f016a84706a87f90eb0783d3d83d02 185 Gene3D G3DSA:3.30.1370.110 46 180 7.4E-41 T 31-10-2018 Y89_3659 15f016a84706a87f90eb0783d3d83d02 185 SMART SM00463 92 176 1.0E-8 T 31-10-2018 IPR002625 Smr domain Y89_3659 15f016a84706a87f90eb0783d3d83d02 185 Pfam PF01713 Smr domain 95 176 2.3E-21 T 31-10-2018 IPR002625 Smr domain Y89_0671 1aceb12e88a473cb0c8170689cabbe0d 224 SUPERFAMILY SSF53448 1 220 6.76E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_0671 1aceb12e88a473cb0c8170689cabbe0d 224 Gene3D G3DSA:3.90.550.10 1 224 3.8E-61 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_0671 1aceb12e88a473cb0c8170689cabbe0d 224 Pfam PF00483 Nucleotidyl transferase 2 117 7.6E-16 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 Gene3D G3DSA:1.10.287.470 64 137 6.8E-76 T 31-10-2018 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 27 256 1.0E-11 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 Gene3D G3DSA:2.40.420.20 248 340 2.1E-24 T 31-10-2018 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 Gene3D G3DSA:2.40.50.100 29 173 6.8E-76 T 31-10-2018 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 SUPERFAMILY SSF111369 18 263 5.49E-75 T 31-10-2018 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 Gene3D G3DSA:2.40.30.170 23 247 6.8E-76 T 31-10-2018 Y89_5207 f9be9a346d00f75ba29d88ccb24e5abc 354 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 5 337 1.2E-82 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_3972 efaf2548cf302fdc1160355950284f7a 177 SUPERFAMILY SSF55729 1 169 2.66E-39 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3972 efaf2548cf302fdc1160355950284f7a 177 Gene3D G3DSA:3.40.630.30 1 177 2.1E-53 T 31-10-2018 Y89_3972 efaf2548cf302fdc1160355950284f7a 177 Pfam PF00583 Acetyltransferase (GNAT) family 44 143 4.6E-15 T 31-10-2018 IPR000182 GNAT domain Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 SUPERFAMILY SSF53850 92 294 2.17E-33 T 31-10-2018 Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 Gene3D G3DSA:3.40.190.10 162 261 3.6E-51 T 31-10-2018 Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 SUPERFAMILY SSF46785 8 113 1.02E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 Pfam PF03466 LysR substrate binding domain 92 292 8.7E-33 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 Gene3D G3DSA:3.40.190.10 102 288 3.6E-51 T 31-10-2018 Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 Gene3D G3DSA:1.10.10.10 5 95 2.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4169 f7f7a3fcbad43dc77dca9b8109384059 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.1E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0510 6031880cf40b8c57af39ba0cedca4ac1 106 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 23 101 1.1E-6 T 31-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein Y89_0510 6031880cf40b8c57af39ba0cedca4ac1 106 PIRSF PIRSF034456 1 106 1.2E-53 T 31-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 Y89_3062 218d25237b442148b6b9c94767f961bc 527 Pfam PF00171 Aldehyde dehydrogenase family 35 456 2.2E-46 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_3062 218d25237b442148b6b9c94767f961bc 527 Gene3D G3DSA:3.40.309.10 267 454 4.5E-199 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_3062 218d25237b442148b6b9c94767f961bc 527 Gene3D G3DSA:3.40.605.10 44 519 4.5E-199 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_3062 218d25237b442148b6b9c94767f961bc 527 SUPERFAMILY SSF53720 22 518 6.81E-101 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_2335 0eb2b68e5f2a4b52482482972deac519 665 SUPERFAMILY SSF52540 105 554 2.65E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2335 0eb2b68e5f2a4b52482482972deac519 665 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 137 558 7.6E-104 T 31-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Y89_2335 0eb2b68e5f2a4b52482482972deac519 665 Gene3D G3DSA:3.40.50.300 325 556 2.9E-49 T 31-10-2018 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 1.5E-23 T 31-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 SUPERFAMILY SSF54782 220 309 2.22E-28 T 31-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 SUPERFAMILY SSF53850 4 219 9.19E-84 T 31-10-2018 Y89_5949 b971040e7a2cc86e732531daa7065258 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 31-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 2.5E-111 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Gene3D G3DSA:3.40.190.10 6 210 9.4E-84 T 31-10-2018 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 1.0E-77 T 31-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 4.9E-51 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 4.9E-51 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 4.9E-51 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 4.9E-51 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 4.9E-51 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Gene3D G3DSA:3.30.160.40 221 306 1.8E-29 T 31-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Gene3D G3DSA:3.40.190.10 103 202 9.4E-84 T 31-10-2018 Y89_5949 b971040e7a2cc86e732531daa7065258 313 PIRSF PIRSF001438 1 311 2.7E-120 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5949 b971040e7a2cc86e732531daa7065258 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.355 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_0864 4c9c487b8c1cce2411c2347a0d09ff8a 265 Gene3D G3DSA:3.40.50.300 5 254 1.9E-62 T 31-10-2018 Y89_0864 4c9c487b8c1cce2411c2347a0d09ff8a 265 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0864 4c9c487b8c1cce2411c2347a0d09ff8a 265 SMART SM00382 29 238 5.7E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0864 4c9c487b8c1cce2411c2347a0d09ff8a 265 Pfam PF00005 ABC transporter 21 168 2.1E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0864 4c9c487b8c1cce2411c2347a0d09ff8a 265 SUPERFAMILY SSF52540 5 230 5.0E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2383 b7904277f0329ded0a7a2e6925da178e 339 SMART SM00342 256 338 4.0E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2383 b7904277f0329ded0a7a2e6925da178e 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 213 5.0E-44 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_2383 b7904277f0329ded0a7a2e6925da178e 339 Gene3D G3DSA:1.10.10.60 236 339 2.3E-25 T 31-10-2018 Y89_2383 b7904277f0329ded0a7a2e6925da178e 339 SUPERFAMILY SSF46689 291 338 2.9E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2383 b7904277f0329ded0a7a2e6925da178e 339 Pfam PF12833 Helix-turn-helix domain 262 339 2.7E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2375 82303ec422943cb61277b4e309f2d10a 287 SUPERFAMILY SSF103481 194 285 1.83E-12 T 31-10-2018 Y89_2375 82303ec422943cb61277b4e309f2d10a 287 Pfam PF00892 EamA-like transporter family 14 140 8.8E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2375 82303ec422943cb61277b4e309f2d10a 287 Pfam PF00892 EamA-like transporter family 153 283 4.6E-11 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2375 82303ec422943cb61277b4e309f2d10a 287 SUPERFAMILY SSF103481 44 143 1.09E-9 T 31-10-2018 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 SUPERFAMILY SSF52540 1 211 1.31E-49 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 Gene3D G3DSA:3.40.50.300 1 136 1.1E-52 T 31-10-2018 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 Gene3D G3DSA:1.20.272.10 215 342 1.4E-37 T 31-10-2018 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 336 2.3E-111 T 31-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 SUPERFAMILY SSF48019 213 337 3.57E-32 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 Gene3D G3DSA:1.10.8.60 145 213 1.1E-27 T 31-10-2018 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 216 339 8.1E-14 T 31-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_1033 524a5e2de4a75a114e6607229260e4ce 345 Pfam PF06144 DNA polymerase III, delta subunit 20 191 6.6E-33 T 31-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 Y89_3624 6e54c5d13d0ded10892bf03254ebd54b 295 Pfam PF05844 YopD protein 1 295 3.1E-154 T 31-10-2018 IPR008898 YopD-like Y89_1078 0a65cf3107ae9a6889778fda7fd90de4 196 Gene3D G3DSA:3.40.630.30 3 175 2.9E-39 T 31-10-2018 Y89_1078 0a65cf3107ae9a6889778fda7fd90de4 196 SUPERFAMILY SSF55729 15 189 2.08E-36 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1078 0a65cf3107ae9a6889778fda7fd90de4 196 Pfam PF13302 Acetyltransferase (GNAT) domain 21 162 1.1E-29 T 31-10-2018 IPR000182 GNAT domain Y89_5407 b472f8c346b384d33dea0b47473aabf3 160 SUPERFAMILY SSF55729 1 158 1.63E-35 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5407 b472f8c346b384d33dea0b47473aabf3 160 Gene3D G3DSA:3.40.630.30 1 160 2.0E-44 T 31-10-2018 Y89_5407 b472f8c346b384d33dea0b47473aabf3 160 Pfam PF00583 Acetyltransferase (GNAT) family 36 133 5.3E-11 T 31-10-2018 IPR000182 GNAT domain Y89_1357 6d9a890f295aaaaafaf37623d4048d05 326 Pfam PF14238 Domain of unknown function (DUF4340) 72 246 7.5E-19 T 31-10-2018 IPR025641 Domain of unknown function DUF4340 Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 Pfam PF00005 ABC transporter 27 180 1.9E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 SUPERFAMILY SSF52540 10 241 2.89E-55 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 10 248 1.2E-98 T 31-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 Gene3D G3DSA:3.40.50.300 8 270 1.7E-58 T 31-10-2018 Y89_5994 d11826808128516e590de6bdb7f2a5d3 275 SMART SM00382 36 236 2.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2760 f13a7a5b7d05ec5b1328cdab9037ca39 335 Gene3D G3DSA:3.30.479.30 80 224 1.6E-9 T 31-10-2018 Y89_2760 f13a7a5b7d05ec5b1328cdab9037ca39 335 SUPERFAMILY SSF117892 81 224 2.62E-13 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_2760 f13a7a5b7d05ec5b1328cdab9037ca39 335 SMART SM00244 45 219 7.4E-9 T 31-10-2018 IPR001107 Band 7 domain Y89_2760 f13a7a5b7d05ec5b1328cdab9037ca39 335 Pfam PF01145 SPFH domain / Band 7 family 49 234 1.3E-29 T 31-10-2018 IPR001107 Band 7 domain Y89_2760 f13a7a5b7d05ec5b1328cdab9037ca39 335 PIRSF PIRSF005651 22 327 9.6E-90 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 Gene3D G3DSA:3.30.2310.10 137 224 8.6E-18 T 31-10-2018 Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 ProSitePatterns PS01318 TsaA-like domain signature. 86 97 - T 31-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 4 143 1.6E-44 T 31-10-2018 IPR023370 YaeB-like, N-terminal domain Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 SUPERFAMILY SSF118196 2 218 9.55E-77 T 31-10-2018 IPR036413 YaeB-like superfamily Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 Pfam PF01980 Uncharacterised protein family UPF0066 20 138 3.0E-41 T 31-10-2018 IPR023370 YaeB-like, N-terminal domain Y89_1621 967dd38b45b2e52a97e106b5d8e77b35 231 Gene3D G3DSA:2.40.30.70 1 136 9.4E-46 T 31-10-2018 IPR036414 YaeB, N-terminal domain superfamily Y89_0067 796d97a44c99b64528de824c9e2b2c0e 295 SMART SM00849 44 229 3.4E-22 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_0067 796d97a44c99b64528de824c9e2b2c0e 295 Gene3D G3DSA:3.60.15.10 32 263 1.3E-31 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_0067 796d97a44c99b64528de824c9e2b2c0e 295 SUPERFAMILY SSF56281 26 253 3.08E-44 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_0067 796d97a44c99b64528de824c9e2b2c0e 295 Pfam PF00753 Metallo-beta-lactamase superfamily 47 229 3.7E-12 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_5591 bc50be6b6d7b21244b2e521f6b5d7843 307 SUPERFAMILY SSF52266 31 304 2.51E-10 T 31-10-2018 Y89_5591 bc50be6b6d7b21244b2e521f6b5d7843 307 Gene3D G3DSA:3.40.50.1110 21 306 6.5E-48 T 31-10-2018 IPR036514 SGNH hydrolase superfamily Y89_5591 bc50be6b6d7b21244b2e521f6b5d7843 307 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 32 300 1.5E-5 T 31-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:2.40.30.170 332 415 7.5E-13 T 31-10-2018 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 22 443 3.0E-142 T 31-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 75 95 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 33 56 1.2E-65 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:2.40.50.100 295 331 7.5E-13 T 31-10-2018 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:2.40.50.100 66 131 3.1E-8 T 31-10-2018 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 399 8.1E-19 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 SUPERFAMILY SSF111369 266 346 4.71E-5 T 31-10-2018 Y89_1603 1bb3177c7f805d6ce5e57071124521ea 443 Gene3D G3DSA:1.10.287.470 168 294 7.5E-13 T 31-10-2018 Y89_5414 1edafbaafa40d48d54aa95619256ef0b 240 Gene3D G3DSA:3.60.110.10 2 239 3.7E-45 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_5414 1edafbaafa40d48d54aa95619256ef0b 240 Pfam PF00795 Carbon-nitrogen hydrolase 4 231 1.0E-23 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_5414 1edafbaafa40d48d54aa95619256ef0b 240 SUPERFAMILY SSF56317 4 234 1.31E-46 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_2284 e85f14787e089b35cccddb2c9b35a6f5 124 Gene3D G3DSA:3.30.160.370 1 122 2.1E-41 T 31-10-2018 Y89_2284 e85f14787e089b35cccddb2c9b35a6f5 124 Pfam PF16703 Domain of unknown function (DUF5064) 1 115 5.4E-46 T 31-10-2018 IPR032024 Protein of unknown function DUF5064 Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 SUPERFAMILY SSF53633 3 283 6.84E-63 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 4 432 5.8E-213 T 31-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 Gene3D G3DSA:3.40.1160.10 3 283 2.2E-86 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 Gene3D G3DSA:3.40.630.30 284 432 8.7E-38 T 31-10-2018 Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 SUPERFAMILY SSF55729 253 409 1.2E-18 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 Pfam PF00696 Amino acid kinase family 25 259 1.0E-18 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 432 222.198 T 31-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 Pfam PF00583 Acetyltransferase (GNAT) family 321 398 2.9E-9 T 31-10-2018 IPR000182 GNAT domain Y89_5891 a9324c57adf80ac2d843be9dbee9a77f 432 PIRSF PIRSF000423 1 432 1.2E-192 T 31-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Y89_5882 73da878f5e93bf70d5783945d609c29b 133 PIRSF PIRSF016821 8 133 3.7E-38 T 31-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 Y89_5882 73da878f5e93bf70d5783945d609c29b 133 SUPERFAMILY SSF55174 10 105 1.37E-26 T 31-10-2018 Y89_5882 73da878f5e93bf70d5783945d609c29b 133 Pfam PF01479 S4 domain 11 56 1.4E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_5882 73da878f5e93bf70d5783945d609c29b 133 Gene3D G3DSA:3.10.290.10 3 110 3.0E-35 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_5882 73da878f5e93bf70d5783945d609c29b 133 SMART SM00363 11 74 5.9E-6 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0901 890df194b790b2a66bffa9879d813213 219 Gene3D G3DSA:3.90.850.10 9 219 2.5E-61 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0901 890df194b790b2a66bffa9879d813213 219 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 11 216 1.0E-95 T 31-10-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 Y89_0901 890df194b790b2a66bffa9879d813213 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 14 216 2.7E-51 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_0901 890df194b790b2a66bffa9879d813213 219 SUPERFAMILY SSF56529 11 217 4.45E-61 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 SUPERFAMILY SSF52540 14 239 1.07E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 Gene3D G3DSA:3.40.50.300 6 280 6.5E-40 T 31-10-2018 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 Pfam PF00005 ABC transporter 365 494 1.0E-15 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 SUPERFAMILY SSF52540 364 526 5.5E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 Gene3D G3DSA:3.40.50.300 308 540 7.1E-34 T 31-10-2018 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 Pfam PF00005 ABC transporter 41 180 2.7E-16 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 SMART SM00382 39 224 2.6E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3923 2a94e422d1c81c449d80a2867f0d2c10 557 SMART SM00382 373 540 7.2E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0795 c28af269655c9cc260abb5c342803b73 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 292 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_0795 c28af269655c9cc260abb5c342803b73 296 SUPERFAMILY SSF46689 198 248 5.29E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0795 c28af269655c9cc260abb5c342803b73 296 SMART SM00342 214 296 2.6E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0795 c28af269655c9cc260abb5c342803b73 296 Gene3D G3DSA:1.10.10.60 194 296 1.6E-25 T 31-10-2018 Y89_0795 c28af269655c9cc260abb5c342803b73 296 SUPERFAMILY SSF46689 250 296 3.05E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0795 c28af269655c9cc260abb5c342803b73 296 Pfam PF12833 Helix-turn-helix domain 220 296 1.1E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 Gene3D G3DSA:3.30.360.10 130 343 9.6E-45 T 31-10-2018 Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 SUPERFAMILY SSF55347 124 276 1.05E-28 T 31-10-2018 Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 Gene3D G3DSA:3.40.50.720 3 129 6.8E-33 T 31-10-2018 Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 224 1.2E-10 T 31-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 SUPERFAMILY SSF51735 3 151 1.77E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0244 624a4ae1b3dec7f59c87d236025face2 347 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 2.0E-20 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y89_2903 630c7242a45d8921ebefe641b9f5a51e 272 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 27 156 2.9E-8 T 31-10-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal Y89_2903 630c7242a45d8921ebefe641b9f5a51e 272 Pfam PF09356 Phage conserved hypothetical protein BR0599 188 263 2.8E-17 T 31-10-2018 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal Y89_2903 630c7242a45d8921ebefe641b9f5a51e 272 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 21 263 2.3E-39 T 31-10-2018 IPR011928 Bacteriophage phiJL001, Gp84 Y89_5439 630c7242a45d8921ebefe641b9f5a51e 272 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 27 156 2.9E-8 T 31-10-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal Y89_5439 630c7242a45d8921ebefe641b9f5a51e 272 Pfam PF09356 Phage conserved hypothetical protein BR0599 188 263 2.8E-17 T 31-10-2018 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal Y89_5439 630c7242a45d8921ebefe641b9f5a51e 272 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 21 263 2.3E-39 T 31-10-2018 IPR011928 Bacteriophage phiJL001, Gp84 Y89_4241 2b282482eb5d1a0f0e7bb8c022081773 73 Pfam PF09905 DNA-binding protein VF530 6 66 6.4E-34 T 31-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 Y89_4241 2b282482eb5d1a0f0e7bb8c022081773 73 Gene3D G3DSA:1.10.720.30 12 71 1.3E-30 T 31-10-2018 IPR036361 SAP domain superfamily Y89_1869 72f5aecb5e4f2559e755d0821f5e5010 380 Gene3D G3DSA:3.40.50.620 8 258 8.0E-16 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_1869 72f5aecb5e4f2559e755d0821f5e5010 380 TIGRFAM TIGR03573 WbuX: N-acetyl sugar amidotransferase 7 344 1.8E-89 T 31-10-2018 IPR020022 N-acetyl sugar amidotransferase Y89_1869 72f5aecb5e4f2559e755d0821f5e5010 380 Pfam PF00733 Asparagine synthase 73 177 2.4E-5 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Y89_1869 72f5aecb5e4f2559e755d0821f5e5010 380 SUPERFAMILY SSF52402 54 321 3.09E-28 T 31-10-2018 Y89_2791 b703e91600bd92c1c650c1926f9c5b36 301 Gene3D G3DSA:1.10.3470.10 59 291 1.2E-8 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_2791 b703e91600bd92c1c650c1926f9c5b36 301 SUPERFAMILY SSF81345 19 283 6.8E-32 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_2791 b703e91600bd92c1c650c1926f9c5b36 301 Pfam PF00950 ABC 3 transport family 27 286 7.2E-51 T 31-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:1.10.287.470 94 185 1.4E-89 T 31-10-2018 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:2.40.30.170 49 322 1.4E-89 T 31-10-2018 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:2.40.420.20 44 381 1.4E-89 T 31-10-2018 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 264 4.3E-39 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 SUPERFAMILY SSF111369 51 252 1.44E-24 T 31-10-2018 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 Gene3D G3DSA:2.40.50.100 60 222 1.4E-89 T 31-10-2018 Y89_2810 a52870b0b55ce24dc94eb9dd09c9f41a 391 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 265 6.4E-20 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 SUPERFAMILY SSF51621 10 514 2.42E-124 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 290 410 5.4E-12 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 412 531 4.2E-8 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 PIRSF PIRSF001362 1 278 4.9E-29 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 429 530 2.6E-13 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 81 269 3.2E-20 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 Pfam PF00463 Isocitrate lyase family 330 399 1.3E-9 T 31-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Y89_2454 23c386e72bf88d768b21d31081ac26e1 531 Gene3D G3DSA:3.20.20.60 411 531 1.0E-20 T 31-10-2018 Y89_1585 caff4a2d21f8b045f92dcef3bc61fb83 585 Pfam PF06980 Protein of unknown function (DUF1302) 31 585 1.1E-221 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_5855 832608b287aa1812afd6d876e9956008 427 PIRSF PIRSF006066 1 427 4.3E-157 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_5855 832608b287aa1812afd6d876e9956008 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 6.7E-149 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_5855 832608b287aa1812afd6d876e9956008 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 7.7E-125 T 31-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 SMART SM00342 255 338 4.9E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 Gene3D G3DSA:1.10.10.60 237 351 2.4E-19 T 31-10-2018 Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 SUPERFAMILY SSF46689 291 341 1.12E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 Pfam PF12833 Helix-turn-helix domain 262 339 6.0E-15 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 31 212 4.1E-45 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 3.1E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2634 9975a558ea63898529ba7ccfe0b6f2a1 361 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 3.1E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_4491 6f6d2e2a17d5df651f81c5fa8b6e598f 137 Pfam PF00472 RF-1 domain 8 132 4.4E-26 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_4491 6f6d2e2a17d5df651f81c5fa8b6e598f 137 Gene3D G3DSA:3.30.160.20 1 136 1.4E-40 T 31-10-2018 Y89_4491 6f6d2e2a17d5df651f81c5fa8b6e598f 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Y89_4491 6f6d2e2a17d5df651f81c5fa8b6e598f 137 SUPERFAMILY SSF75620 8 117 6.28E-13 T 31-10-2018 Y89_0822 b28aa0e3a7af7c87517f0588d58b7ec4 288 Gene3D G3DSA:3.60.15.10 2 269 8.2E-66 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_0822 b28aa0e3a7af7c87517f0588d58b7ec4 288 SMART SM00849 43 257 1.8E-22 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_0822 b28aa0e3a7af7c87517f0588d58b7ec4 288 SUPERFAMILY SSF56281 3 270 9.96E-41 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_0822 b28aa0e3a7af7c87517f0588d58b7ec4 288 Pfam PF00753 Metallo-beta-lactamase superfamily 42 257 5.9E-27 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_0994 d9b95b62756574e86ea4014f873e6184 276 Pfam PF06167 Glucose-regulated metallo-peptidase M90 5 249 5.4E-88 T 31-10-2018 IPR010384 MtfA family Y89_0994 d9b95b62756574e86ea4014f873e6184 276 Gene3D G3DSA:3.40.390.10 146 270 5.0E-41 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Y89_0994 d9b95b62756574e86ea4014f873e6184 276 Gene3D G3DSA:1.10.472.150 19 142 1.2E-36 T 31-10-2018 Y89_0994 d9b95b62756574e86ea4014f873e6184 276 SUPERFAMILY SSF55486 39 251 5.05E-38 T 31-10-2018 Y89_4665 503bd599af5bca373baeeecf3f0a640e 126 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 17 110 9.2E-35 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_4665 503bd599af5bca373baeeecf3f0a640e 126 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 36 109 1.7E-27 T 31-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 SMART SM00283 413 674 2.0E-96 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 511 538 4.2E-20 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 4.2E-20 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 540 569 4.2E-20 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 39 148 9.4E-26 T 31-10-2018 IPR029095 NarX-like, N-terminal Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 SUPERFAMILY SSF58104 374 675 2.09E-67 T 31-10-2018 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 459 642 1.0E-43 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_0434 319eae4c91b702e9136b3d8bcaae752b 682 Gene3D G3DSA:1.10.287.950 350 676 5.4E-65 T 31-10-2018 Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 Pfam PF03796 DnaB-like helicase C terminal domain 197 453 1.8E-113 T 31-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 SUPERFAMILY SSF48024 18 129 1.31E-40 T 31-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 20 455 5.1E-177 T 31-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 SUPERFAMILY SSF52540 196 446 7.67E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 Gene3D G3DSA:1.10.860.10 13 178 7.0E-58 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 Gene3D G3DSA:3.40.50.300 179 459 1.0E-106 T 31-10-2018 Y89_5601 6a3a1fe11e64a7183fdcff270132770f 464 Pfam PF00772 DnaB-like helicase N terminal domain 20 121 1.6E-37 T 31-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Y89_6209 24fc046b975bb0ce82c9759f85b0eb58 434 Pfam PF03600 Citrate transporter 13 377 3.5E-56 T 31-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Y89_6209 24fc046b975bb0ce82c9759f85b0eb58 434 TIGRFAM TIGR00784 citMHS: citrate transporter 1 429 7.2E-190 T 31-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PRINTS PR01009 Flagellar M-ring protein signature 140 158 2.2E-41 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PRINTS PR01009 Flagellar M-ring protein signature 172 186 2.2E-41 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PRINTS PR01009 Flagellar M-ring protein signature 215 233 2.2E-41 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PRINTS PR01009 Flagellar M-ring protein signature 285 303 2.2E-41 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PRINTS PR01009 Flagellar M-ring protein signature 392 416 2.2E-41 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 PIRSF PIRSF004862 27 598 5.7E-140 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4253 326ed212556609999d03b468de9dcfa6 598 Pfam PF08345 Flagellar M-ring protein C-terminal 272 469 3.0E-49 T 31-10-2018 IPR013556 Flagellar M-ring C-terminal Y89_4253 326ed212556609999d03b468de9dcfa6 598 Pfam PF01514 Secretory protein of YscJ/FliF family 48 239 7.7E-71 T 31-10-2018 IPR006182 Secretory protein YscJ/FliF Y89_4253 326ed212556609999d03b468de9dcfa6 598 Gene3D G3DSA:3.30.300.30 139 243 2.2E-11 T 31-10-2018 Y89_4253 326ed212556609999d03b468de9dcfa6 598 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 34 513 3.2E-93 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Y89_4205 7f7da39d2d59a546b471fe1bb2f3fccf 496 PIRSF PIRSF006060 9 487 4.2E-54 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4205 7f7da39d2d59a546b471fe1bb2f3fccf 496 Pfam PF13520 Amino acid permease 27 463 9.9E-41 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4205 7f7da39d2d59a546b471fe1bb2f3fccf 496 Gene3D G3DSA:1.20.1740.10 22 434 3.8E-40 T 31-10-2018 Y89_0215 9f9a379152a280447444c4ba92770603 554 Gene3D G3DSA:3.40.1080.10 38 245 1.6E-18 T 31-10-2018 Y89_0215 9f9a379152a280447444c4ba92770603 554 Pfam PF16957 Malonate decarboxylase, alpha subunit, transporter 10 554 6.9E-295 T 31-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 Y89_0215 9f9a379152a280447444c4ba92770603 554 SUPERFAMILY SSF100950 42 282 1.19E-35 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_0215 9f9a379152a280447444c4ba92770603 554 TIGRFAM TIGR01110 mdcA: malonate decarboxylase, alpha subunit 11 554 0.0 T 31-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 Y89_0215 9f9a379152a280447444c4ba92770603 554 SUPERFAMILY SSF100950 230 493 1.1E-22 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.5E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.5E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.5E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 Gene3D G3DSA:1.10.10.10 2 87 3.4E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 Pfam PF03466 LysR substrate binding domain 88 286 3.7E-36 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 SUPERFAMILY SSF53850 89 290 3.62E-38 T 31-10-2018 Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 SUPERFAMILY SSF46785 1 87 8.27E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.4E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4214 d310355deb067250ba5cf8dcc7e7c5a8 291 Gene3D G3DSA:3.40.190.290 90 286 3.4E-36 T 31-10-2018 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 Gene3D G3DSA:1.10.10.60 222 266 7.1E-15 T 31-10-2018 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 3.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 3.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 SUPERFAMILY SSF46689 216 263 2.91E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 Pfam PF12833 Helix-turn-helix domain 185 262 3.4E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 Pfam PF02311 AraC-like ligand binding domain 13 142 5.0E-25 T 31-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 257 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 Gene3D G3DSA:1.10.10.60 164 221 5.2E-12 T 31-10-2018 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 SUPERFAMILY SSF46689 166 213 8.06E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 Gene3D G3DSA:2.60.120.10 14 86 4.8E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 SMART SM00342 179 261 8.8E-25 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6080 c8e6e8ef0054e6bb1a0dc5807e855e50 266 SUPERFAMILY SSF51215 22 146 1.83E-16 T 31-10-2018 IPR037923 Transcription regulator HTH-like Y89_6126 186da5be8e9f7e1958278f52dec4d0aa 312 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 283 3.1E-54 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_6126 186da5be8e9f7e1958278f52dec4d0aa 312 Gene3D G3DSA:3.40.190.100 113 222 8.9E-84 T 31-10-2018 Y89_6126 186da5be8e9f7e1958278f52dec4d0aa 312 SUPERFAMILY SSF53850 23 299 8.96E-77 T 31-10-2018 Y89_6126 186da5be8e9f7e1958278f52dec4d0aa 312 Gene3D G3DSA:3.40.190.10 31 292 8.9E-84 T 31-10-2018 Y89_6126 186da5be8e9f7e1958278f52dec4d0aa 312 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 22 310 5.3E-133 T 31-10-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y89_1669 a3feeb189db5c973850e87952126fe83 683 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 640 681 6.7E-16 T 31-10-2018 IPR020011 Motility protein FimV, C-terminal Y89_1669 a3feeb189db5c973850e87952126fe83 683 Gene3D G3DSA:1.20.58.2200 629 683 4.5E-12 T 31-10-2018 IPR038440 FimV, C-terminal domain superfamily Y89_1669 a3feeb189db5c973850e87952126fe83 683 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 182 235 4.6E-12 T 31-10-2018 IPR020012 Motility protein FimV, N-terminal Y89_3108 cfea98c05869da1b35c2c4609776b3d0 365 SUPERFAMILY SSF56059 122 256 3.24E-6 T 31-10-2018 Y89_3108 cfea98c05869da1b35c2c4609776b3d0 365 Pfam PF11379 Protein of unknown function (DUF3182) 10 360 1.3E-141 T 31-10-2018 IPR021519 Protein of unknown function DUF3182 Y89_4546 04a3cec90680fbfa2e93ece3e339c500 415 SUPERFAMILY SSF103473 7 405 1.57E-61 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4546 04a3cec90680fbfa2e93ece3e339c500 415 Gene3D G3DSA:1.20.1250.20 218 405 9.6E-20 T 31-10-2018 Y89_4546 04a3cec90680fbfa2e93ece3e339c500 415 Pfam PF07690 Major Facilitator Superfamily 22 369 1.4E-48 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4546 04a3cec90680fbfa2e93ece3e339c500 415 Gene3D G3DSA:1.20.1250.20 7 199 5.8E-33 T 31-10-2018 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Pfam PF05175 Methyltransferase small domain 122 208 9.7E-16 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 8 286 4.4E-80 T 31-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 6 287 5.9E-131 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 PIRSF PIRSF037167 1 300 4.6E-140 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 1 293 52.859 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 SUPERFAMILY SSF53335 9 286 6.2E-55 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Gene3D G3DSA:3.40.50.150 102 278 2.1E-45 T 31-10-2018 Y89_3656 d0cf19afcc2f7e00f14c8cf6ceff2d4c 304 Gene3D G3DSA:1.10.8.10 7 99 9.9E-8 T 31-10-2018 Y89_3680 6c0070c70575939676b20768985c0c1f 388 SUPERFAMILY SSF53383 2 381 7.7E-94 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_3680 6c0070c70575939676b20768985c0c1f 388 Gene3D G3DSA:3.40.640.10 54 272 3.1E-115 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3680 6c0070c70575939676b20768985c0c1f 388 Pfam PF00155 Aminotransferase class I and II 51 375 3.1E-30 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_3680 6c0070c70575939676b20768985c0c1f 388 Gene3D G3DSA:3.90.1150.10 15 378 3.1E-115 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4997 3b98d15df360974f2051c563f6336aad 251 Gene3D G3DSA:3.20.20.370 1 251 2.7E-106 T 31-10-2018 Y89_4997 3b98d15df360974f2051c563f6336aad 251 SUPERFAMILY SSF88713 7 249 6.67E-90 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_4997 3b98d15df360974f2051c563f6336aad 251 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 6 251 42.644 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_4997 3b98d15df360974f2051c563f6336aad 251 Pfam PF03746 LamB/YcsF family 8 249 3.7E-93 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 SUPERFAMILY SSF144083 275 336 2.48E-15 T 31-10-2018 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 Pfam PF01544 CorA-like Mg2+ transporter protein 49 332 1.2E-50 T 31-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 Gene3D G3DSA:1.20.58.340 282 338 1.7E-14 T 31-10-2018 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 SUPERFAMILY SSF143865 13 272 3.92E-34 T 31-10-2018 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 Gene3D G3DSA:1.20.58.340 157 278 6.8E-15 T 31-10-2018 Y89_3452 b5154ce155078e9514a5c1874e6f08fd 340 Gene3D G3DSA:3.30.460.20 7 149 9.5E-31 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 ProSitePatterns PS00163 Fumarate lyases signature. 309 318 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 Gene3D G3DSA:1.10.275.60 57 261 9.7E-126 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 SMART SM00998 397 476 3.2E-16 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 Pfam PF00206 Lyase 54 327 1.5E-41 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_1511 388b9c02053dd519f95f8025b752bf85 483 Pfam PF10397 Adenylosuccinate lyase C-terminus 400 475 8.6E-12 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 SUPERFAMILY SSF48557 43 480 3.93E-104 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 1.5E-9 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00145 Argininosuccinate lyase family signature 264 288 1.5E-9 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00145 Argininosuccinate lyase family signature 309 325 1.5E-9 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 Gene3D G3DSA:1.20.200.10 47 473 9.7E-126 T 31-10-2018 Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.6E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 9.6E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00149 Fumarate lyase superfamily signature 309 325 9.6E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1511 388b9c02053dd519f95f8025b752bf85 483 PRINTS PR00149 Fumarate lyase superfamily signature 264 291 9.6E-25 T 31-10-2018 IPR000362 Fumarate lyase family Y89_1511 388b9c02053dd519f95f8025b752bf85 483 Gene3D G3DSA:1.10.40.30 395 464 9.7E-126 T 31-10-2018 Y89_4510 8e0dceccd66c24c04e436402d4de1b47 139 SUPERFAMILY SSF161084 11 136 1.27E-16 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Y89_4510 8e0dceccd66c24c04e436402d4de1b47 139 Gene3D G3DSA:1.20.120.550 6 136 3.7E-11 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Y89_4510 8e0dceccd66c24c04e436402d4de1b47 139 Pfam PF01124 MAPEG family 6 136 2.3E-21 T 31-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.91 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 Gene3D G3DSA:1.20.58.110 1 87 1.4E-30 T 31-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 85 7.8E-30 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 Pfam PF01649 Ribosomal protein S20 2 84 8.0E-29 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 SUPERFAMILY SSF46992 3 86 3.14E-33 T 31-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_5170 0f99b2ba4f548c4219b86f4f7d705ddb 91 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 19 91 6.0E-35 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0157 fe70943823c42ca294a75894ebdcff74 208 SUPERFAMILY SSF52309 40 199 2.62E-46 T 31-10-2018 Y89_0157 fe70943823c42ca294a75894ebdcff74 208 Gene3D G3DSA:3.40.50.450 33 206 1.6E-56 T 31-10-2018 Y89_0157 fe70943823c42ca294a75894ebdcff74 208 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 42 183 2.1E-49 T 31-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 Y89_6213 be34a0df14eb10ad1d7b0eb4b9b28661 264 Gene3D G3DSA:3.40.190.10 120 211 1.3E-7 T 31-10-2018 Y89_6213 be34a0df14eb10ad1d7b0eb4b9b28661 264 SUPERFAMILY SSF53850 51 251 2.92E-19 T 31-10-2018 Y89_6213 be34a0df14eb10ad1d7b0eb4b9b28661 264 Gene3D G3DSA:3.40.190.10 52 250 1.3E-7 T 31-10-2018 Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 Gene3D G3DSA:3.40.50.720 1 250 2.5E-73 T 31-10-2018 Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.3E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.3E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.3E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.1E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 SUPERFAMILY SSF51735 5 250 6.86E-72 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 3.0E-4 T 31-10-2018 Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 249 6.0E-59 T 31-10-2018 Y89_6261 8eed48be68580a7c938f442e7c783aa1 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1953 9c13cab979add2374cfcd82997d974a3 190 Pfam PF00857 Isochorismatase family 3 181 1.3E-29 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_1953 9c13cab979add2374cfcd82997d974a3 190 Gene3D G3DSA:3.40.50.850 1 190 1.6E-37 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1953 9c13cab979add2374cfcd82997d974a3 190 SUPERFAMILY SSF52499 2 188 6.15E-41 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1784 00cd2d48d2dfc42e074b6456585a76a0 338 Pfam PF01548 Transposase 6 145 3.9E-14 T 31-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Y89_1784 00cd2d48d2dfc42e074b6456585a76a0 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 293 1.8E-24 T 31-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 SUPERFAMILY SSF58104 236 545 3.01E-77 T 31-10-2018 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 184 1.1E-11 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 Pfam PF00672 HAMP domain 216 264 4.0E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 Gene3D G3DSA:1.10.287.950 215 545 5.4E-75 T 31-10-2018 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 SMART SM00283 269 544 1.0E-65 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 SMART SM00304 214 268 4.8E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 SMART SM00304 433 492 110.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 511 2.0E-40 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 304 333 4.1E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 381 408 4.1E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 21 46 4.1E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2102 19e0952a8343202e31fea5dbba8b3a2d 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 410 439 4.1E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 84 193 5.1E-35 T 31-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.0E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 SUPERFAMILY SSF46689 5 79 1.08E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 1.5E-77 T 31-10-2018 IPR017757 Transcriptional repressor BetI Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 Gene3D G3DSA:1.10.357.10 6 196 1.3E-42 T 31-10-2018 Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 197 110.913 T 31-10-2018 IPR017757 Transcriptional repressor BetI Y89_6112 894a4a8ebdea7199ed932a840f262df8 197 SUPERFAMILY SSF48498 81 193 9.24E-24 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 Pfam PF17152 Periplasmic sensor domain 45 145 5.7E-34 T 31-10-2018 IPR033417 Periplasmic sensor domain CHASE8 Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 SMART SM00304 183 236 9.6E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 245 408 1.1E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 SUPERFAMILY SSF55073 254 408 1.02E-44 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 Pfam PF00990 Diguanylate cyclase, GGDEF domain 249 405 8.0E-47 T 31-10-2018 IPR000160 GGDEF domain Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 Gene3D G3DSA:3.30.70.270 254 413 1.3E-54 T 31-10-2018 Y89_4232 ea6b28db2708915219563f8ba5799f4b 435 SMART SM00267 238 411 2.0E-56 T 31-10-2018 IPR000160 GGDEF domain Y89_3057 04dbdfdc18e25ac4f711fb0bd5240fc9 351 Pfam PF01636 Phosphotransferase enzyme family 41 288 2.9E-37 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_3057 04dbdfdc18e25ac4f711fb0bd5240fc9 351 Gene3D G3DSA:3.90.1200.10 125 338 3.4E-35 T 31-10-2018 Y89_3057 04dbdfdc18e25ac4f711fb0bd5240fc9 351 SUPERFAMILY SSF56112 37 322 4.08E-40 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_3057 04dbdfdc18e25ac4f711fb0bd5240fc9 351 Gene3D G3DSA:3.30.200.20 18 124 1.9E-16 T 31-10-2018 Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 235 2.7E-31 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 SUPERFAMILY SSF111369 42 222 1.03E-17 T 31-10-2018 Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 Gene3D G3DSA:2.40.50.100 43 109 6.3E-9 T 31-10-2018 Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 Gene3D G3DSA:2.40.30.170 166 285 2.5E-30 T 31-10-2018 Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 Pfam PF13533 Biotin-lipoyl like 43 88 9.5E-16 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_1708 098c47856b04d8d23edf4d6fd8237275 285 Pfam PF13437 HlyD family secretion protein 153 236 2.0E-12 T 31-10-2018 Y89_6047 5f12e4b6573d8063f50dca0670af01fa 439 Pfam PF01266 FAD dependent oxidoreductase 39 392 1.8E-57 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_6047 5f12e4b6573d8063f50dca0670af01fa 439 Gene3D G3DSA:3.30.9.10 131 353 3.8E-74 T 31-10-2018 Y89_6047 5f12e4b6573d8063f50dca0670af01fa 439 SUPERFAMILY SSF51905 38 431 4.1E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6047 5f12e4b6573d8063f50dca0670af01fa 439 Gene3D G3DSA:3.50.50.60 39 394 3.8E-74 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2107 572caa0b758c13bcb5ccfbd196db3f2d 288 SUPERFAMILY SSF56281 8 253 5.42E-51 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2107 572caa0b758c13bcb5ccfbd196db3f2d 288 SMART SM00849 15 205 7.6E-24 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_2107 572caa0b758c13bcb5ccfbd196db3f2d 288 Gene3D G3DSA:3.60.15.10 3 288 1.2E-111 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_2107 572caa0b758c13bcb5ccfbd196db3f2d 288 Pfam PF00753 Metallo-beta-lactamase superfamily 14 205 4.2E-21 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_3280 a683eab0d9dd0dbe7650f93908370280 300 Pfam PF00849 RNA pseudouridylate synthase 95 242 8.2E-22 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_3280 a683eab0d9dd0dbe7650f93908370280 300 Gene3D G3DSA:3.30.2350.10 79 294 4.1E-40 T 31-10-2018 Y89_3280 a683eab0d9dd0dbe7650f93908370280 300 SUPERFAMILY SSF55120 82 298 3.29E-50 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_3280 a683eab0d9dd0dbe7650f93908370280 300 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 SUPERFAMILY SSF111369 180 247 4.58E-5 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Gene3D G3DSA:2.40.50.100 45 77 1.7E-9 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 SUPERFAMILY SSF111369 44 165 3.14E-11 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Gene3D G3DSA:1.10.287.470 98 199 1.8E-6 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Pfam PF13437 HlyD family secretion protein 200 279 2.1E-7 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Gene3D G3DSA:1.10.287.470 78 97 1.7E-9 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Gene3D G3DSA:2.40.30.170 215 330 8.9E-16 T 31-10-2018 Y89_1649 268a3d2bbf90cdd4bc018e0db5bb7714 352 Pfam PF13533 Biotin-lipoyl like 43 88 3.4E-13 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_4756 c825199cc5e2016379f4edc6069e075c 213 SUPERFAMILY SSF54523 55 208 9.42E-9 T 31-10-2018 Y89_4756 c825199cc5e2016379f4edc6069e075c 213 SUPERFAMILY SSF54523 17 71 1.65E-5 T 31-10-2018 Y89_4756 c825199cc5e2016379f4edc6069e075c 213 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 36 1.3E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4756 c825199cc5e2016379f4edc6069e075c 213 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 3.5E-7 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_4756 c825199cc5e2016379f4edc6069e075c 213 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 PIRSF PIRSF036389 6 731 1.6E-267 T 31-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Gene3D G3DSA:3.30.365.10 585 727 9.1E-39 T 31-10-2018 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 SUPERFAMILY SSF56003 14 249 1.53E-50 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Gene3D G3DSA:3.30.365.10 322 555 1.8E-58 T 31-10-2018 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Gene3D G3DSA:3.30.365.10 346 442 1.8E-58 T 31-10-2018 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 SUPERFAMILY SSF56003 318 724 1.28E-116 T 31-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Gene3D G3DSA:3.30.365.10 47 188 8.3E-26 T 31-10-2018 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Gene3D G3DSA:3.90.1170.50 201 267 9.7E-8 T 31-10-2018 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 SMART SM01008 216 294 3.3E-23 T 31-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 320 558 1.1E-29 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 598 679 8.3E-16 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_3445 11726ff6ded631c1e1a9e71d5e94e8dd 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 25 194 2.3E-17 T 31-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Y89_2535 6f8411e36c13ae8687028eef1dc8360f 69 SUPERFAMILY SSF54862 2 57 4.1E-7 T 31-10-2018 Y89_2535 6f8411e36c13ae8687028eef1dc8360f 69 Pfam PF13459 4Fe-4S single cluster domain 4 60 7.1E-11 T 31-10-2018 Y89_2535 6f8411e36c13ae8687028eef1dc8360f 69 Gene3D G3DSA:3.30.70.20 1 64 2.3E-15 T 31-10-2018 Y89_2779 7a965011282520171dbbee948f4bf062 473 Pfam PF03573 outer membrane porin, OprD family 53 471 1.3E-136 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_2779 7a965011282520171dbbee948f4bf062 473 Gene3D G3DSA:2.40.160.10 57 472 5.6E-130 T 31-10-2018 IPR023614 Porin domain superfamily Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.10.8.60 163 233 2.3E-11 T 31-10-2018 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF16193 AAA C-terminal domain 184 260 2.4E-20 T 31-10-2018 IPR032423 AAA C-terminal domain Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.10.3710.10 339 440 2.2E-37 T 31-10-2018 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 SUPERFAMILY SSF48019 245 427 5.95E-75 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF12002 MgsA AAA+ ATPase C terminal 261 427 1.3E-67 T 31-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:1.20.272.10 235 338 4.3E-42 T 31-10-2018 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 SMART SM00382 46 163 4.2E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 13 142 1.3E-15 T 31-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 Gene3D G3DSA:3.40.50.300 3 162 4.0E-45 T 31-10-2018 Y89_2475 54e9ed3406079ce6dfdf519113afcd33 441 SUPERFAMILY SSF52540 8 234 2.14E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 Pfam PF00255 Glutathione peroxidase 5 111 2.4E-37 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 Gene3D G3DSA:3.40.30.10 1 183 4.0E-60 T 31-10-2018 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 SUPERFAMILY SSF52833 3 179 3.42E-55 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 PIRSF PIRSF000303 1 182 5.8E-59 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 PRINTS PR01011 Glutathione peroxidase family signature 141 150 3.1E-18 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 PRINTS PR01011 Glutathione peroxidase family signature 58 74 3.1E-18 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2543 ad2e34dbc7b4ae78f167ec516c22aef6 184 PRINTS PR01011 Glutathione peroxidase family signature 23 40 3.1E-18 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_5639 882fb4ef3c9c63b22aef9f79779075d4 272 SUPERFAMILY SSF56300 16 267 8.73E-56 T 31-10-2018 Y89_5639 882fb4ef3c9c63b22aef9f79779075d4 272 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 14 258 41.722 T 31-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 Y89_5639 882fb4ef3c9c63b22aef9f79779075d4 272 Gene3D G3DSA:3.60.21.10 2 266 5.0E-72 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_5639 882fb4ef3c9c63b22aef9f79779075d4 272 Pfam PF00149 Calcineurin-like phosphoesterase 17 203 4.3E-13 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_5639 882fb4ef3c9c63b22aef9f79779075d4 272 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 203 258 8.0E-26 T 31-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 Pfam PF04303 PrpF protein 6 391 1.2E-184 T 31-10-2018 IPR007400 PrpF protein Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 SUPERFAMILY SSF54506 3 181 3.61E-68 T 31-10-2018 Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 395 8.5E-237 T 31-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 SUPERFAMILY SSF54506 189 393 2.67E-76 T 31-10-2018 Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 Gene3D G3DSA:3.10.310.10 11 388 1.8E-146 T 31-10-2018 Y89_4564 f98f4a4c8e9c36786ab39a19089aa9b7 395 Gene3D G3DSA:3.10.310.10 181 374 1.8E-146 T 31-10-2018 Y89_3180 b5890f212538dedcfe8d5271356a8706 318 Gene3D G3DSA:2.60.120.1440 113 229 9.7E-6 T 31-10-2018 Y89_3180 b5890f212538dedcfe8d5271356a8706 318 Pfam PF04773 FecR protein 115 205 4.4E-12 T 31-10-2018 IPR006860 FecR protein Y89_3180 b5890f212538dedcfe8d5271356a8706 318 Pfam PF16220 Domain of unknown function (DUF4880) 12 51 2.3E-12 T 31-10-2018 IPR032623 FecR, N-terminal Y89_3180 b5890f212538dedcfe8d5271356a8706 318 PIRSF PIRSF018266 1 318 4.8E-64 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_6109 63f41b237f993ff435f964faffe0973c 134 Pfam PF03061 Thioesterase superfamily 29 103 1.0E-15 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_6109 63f41b237f993ff435f964faffe0973c 134 Gene3D G3DSA:3.10.129.10 3 133 1.4E-34 T 31-10-2018 Y89_6109 63f41b237f993ff435f964faffe0973c 134 SUPERFAMILY SSF54637 9 131 3.58E-32 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_0976 d740b9d5924abb0a9f87c3984b7255c9 214 Pfam PF13975 gag-polyprotein putative aspartyl protease 107 198 1.2E-26 T 31-10-2018 Y89_0976 d740b9d5924abb0a9f87c3984b7255c9 214 Gene3D G3DSA:2.40.70.10 87 214 5.7E-32 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_0976 d740b9d5924abb0a9f87c3984b7255c9 214 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 117 128 - T 31-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 Y89_0976 d740b9d5924abb0a9f87c3984b7255c9 214 SUPERFAMILY SSF50630 98 201 3.5E-20 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_0976 d740b9d5924abb0a9f87c3984b7255c9 214 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 94 211 1.4E-42 T 31-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Y89_0426 a3694ff9795a41c914356700453ce477 170 SUPERFAMILY SSF53271 8 155 7.53E-35 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_0426 a3694ff9795a41c914356700453ce477 170 Gene3D G3DSA:3.40.50.2020 7 164 2.8E-39 T 31-10-2018 Y89_0426 a3694ff9795a41c914356700453ce477 170 Pfam PF00156 Phosphoribosyl transferase domain 20 136 1.1E-16 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_0426 a3694ff9795a41c914356700453ce477 170 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 1 168 28.031 T 31-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 Gene3D G3DSA:1.20.1640.10 99 292 6.2E-10 T 31-10-2018 Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 8 290 28.163 T 31-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 SUPERFAMILY SSF82866 70 286 5.23E-38 T 31-10-2018 Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 Pfam PF07549 SecD/SecF GG Motif 31 57 1.7E-12 T 31-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 92 276 2.0E-54 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 Pfam PF02355 Protein export membrane protein 110 287 5.2E-64 T 31-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 PRINTS PR01755 Bacterial translocase SecF protein signature 35 50 2.6E-32 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 PRINTS PR01755 Bacterial translocase SecF protein signature 147 161 2.6E-32 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 PRINTS PR01755 Bacterial translocase SecF protein signature 195 213 2.6E-32 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 PRINTS PR01755 Bacterial translocase SecF protein signature 227 242 2.6E-32 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Y89_1206 b28ae6774fbaae7db9cd862d990fedef 306 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 36 279 1.6E-79 T 31-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Y89_3849 10ee803069acf94e294f802886abb750 469 Pfam PF04324 BFD-like [2Fe-2S] binding domain 400 451 8.1E-9 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Y89_3849 10ee803069acf94e294f802886abb750 469 Pfam PF01266 FAD dependent oxidoreductase 13 361 1.8E-54 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3849 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:3.30.9.10 96 325 3.3E-96 T 31-10-2018 Y89_3849 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:3.50.50.60 13 358 3.3E-96 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3849 10ee803069acf94e294f802886abb750 469 SUPERFAMILY SSF51905 12 381 1.25E-42 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3849 10ee803069acf94e294f802886abb750 469 Gene3D G3DSA:1.10.10.1100 392 462 2.9E-17 T 31-10-2018 Y89_3849 10ee803069acf94e294f802886abb750 469 SUPERFAMILY SSF54373 229 323 2.22E-9 T 31-10-2018 Y89_3608 97d1994286a0f461ac614dc201337afe 214 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 19 187 1.5E-40 T 31-10-2018 IPR012842 Type III secretion system HrpE/YscL Y89_3608 97d1994286a0f461ac614dc201337afe 214 Pfam PF02108 Flagellar assembly protein FliH 74 194 2.0E-17 T 31-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Y89_5199 fae9f2a0c0cb8baaa7db6fcbac4992e1 493 SUPERFAMILY SSF56954 4 484 1.2E-64 T 31-10-2018 Y89_5199 fae9f2a0c0cb8baaa7db6fcbac4992e1 493 Pfam PF02321 Outer membrane efflux protein 294 480 4.7E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5199 fae9f2a0c0cb8baaa7db6fcbac4992e1 493 Pfam PF02321 Outer membrane efflux protein 51 270 1.4E-18 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5199 fae9f2a0c0cb8baaa7db6fcbac4992e1 493 Gene3D G3DSA:1.20.1600.10 43 484 8.7E-77 T 31-10-2018 Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 Gene3D G3DSA:1.20.81.30 257 367 1.2E-28 T 31-10-2018 Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 Gene3D G3DSA:1.20.81.30 56 173 3.5E-28 T 31-10-2018 Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 31-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.2E-35 T 31-10-2018 IPR003004 GspF/PilC family Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.2E-35 T 31-10-2018 IPR003004 GspF/PilC family Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.2E-35 T 31-10-2018 IPR003004 GspF/PilC family Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.2E-35 T 31-10-2018 IPR003004 GspF/PilC family Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 2.0E-28 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 8.1E-28 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_1917 4ae75daf3762e68cab4d6146c719916e 405 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 404 5.3E-154 T 31-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 Y89_2925 cb92a6dd3c0ac75003d339611f8c00b9 278 Pfam PF00005 ABC transporter 27 167 1.5E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2925 cb92a6dd3c0ac75003d339611f8c00b9 278 SUPERFAMILY SSF52540 9 238 1.82E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2925 cb92a6dd3c0ac75003d339611f8c00b9 278 Gene3D G3DSA:3.40.50.300 3 265 1.4E-58 T 31-10-2018 Y89_2925 cb92a6dd3c0ac75003d339611f8c00b9 278 SMART SM00382 34 217 1.2E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3691 64fe5e2432b2558ff3c37168beb3a65e 115 SUPERFAMILY SSF51316 1 113 5.65E-29 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_3691 64fe5e2432b2558ff3c37168beb3a65e 115 Gene3D G3DSA:2.170.150.70 3 115 1.0E-29 T 31-10-2018 Y89_3691 64fe5e2432b2558ff3c37168beb3a65e 115 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 110 1.5E-7 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 Gene3D G3DSA:2.40.50.530 4 61 5.2E-17 T 31-10-2018 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 SUPERFAMILY SSF143034 2 61 6.67E-20 T 31-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 31-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 61 1.0E-23 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 Pfam PF01632 Ribosomal protein L35 2 60 4.0E-23 T 31-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.841 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 4.6E-20 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.6E-20 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y89_2302 9b683c4717ddf2f13ced5e382f6c7249 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 4.6E-20 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Y89_3784 d4b8a3af608a783d401b19832b7d3c21 203 SUPERFAMILY SSF46626 16 196 2.89E-30 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3784 d4b8a3af608a783d401b19832b7d3c21 203 Gene3D G3DSA:1.10.760.10 41 203 2.1E-79 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3784 d4b8a3af608a783d401b19832b7d3c21 203 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 4 180 2.4E-83 T 31-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y89_3784 d4b8a3af608a783d401b19832b7d3c21 203 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 4 179 4.6E-86 T 31-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Y89_6106 cdca579f518d2f27a32b87900ed9f567 761 SUPERFAMILY SSF161098 452 521 3.01E-6 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6106 cdca579f518d2f27a32b87900ed9f567 761 Gene3D G3DSA:1.10.3720.10 527 758 9.4E-22 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6106 cdca579f518d2f27a32b87900ed9f567 761 SUPERFAMILY SSF50978 106 393 3.48E-9 T 31-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 Y89_6106 cdca579f518d2f27a32b87900ed9f567 761 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 478 756 1.5E-10 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_6106 cdca579f518d2f27a32b87900ed9f567 761 SUPERFAMILY SSF161098 530 746 2.09E-18 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1381 a9c7790e5cafa0a47c4ae5cecdff8410 146 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 145 36.125 T 31-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_1381 a9c7790e5cafa0a47c4ae5cecdff8410 146 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 142 4.7E-65 T 31-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_1381 a9c7790e5cafa0a47c4ae5cecdff8410 146 SUPERFAMILY SSF54637 1 142 3.67E-53 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1381 a9c7790e5cafa0a47c4ae5cecdff8410 146 Pfam PF07977 FabA-like domain 11 137 1.2E-38 T 31-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_1381 a9c7790e5cafa0a47c4ae5cecdff8410 146 Gene3D G3DSA:3.10.129.10 3 146 5.6E-68 T 31-10-2018 Y89_0924 359220499b67d707e9a891f56dfb2903 580 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 111 134 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 283 297 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 PIRSF PIRSF000137 11 566 3.6E-149 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 Gene3D G3DSA:3.50.50.60 30 558 1.3E-181 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0924 359220499b67d707e9a891f56dfb2903 580 Gene3D G3DSA:3.30.410.40 180 501 1.3E-181 T 31-10-2018 Y89_0924 359220499b67d707e9a891f56dfb2903 580 Pfam PF05199 GMC oxidoreductase 418 554 5.2E-42 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 Gene3D G3DSA:4.10.450.10 63 225 1.3E-181 T 31-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 SUPERFAMILY SSF54373 319 504 1.18E-50 T 31-10-2018 Y89_0924 359220499b67d707e9a891f56dfb2903 580 Gene3D G3DSA:1.10.1220.110 126 179 1.3E-181 T 31-10-2018 Y89_0924 359220499b67d707e9a891f56dfb2903 580 Pfam PF00732 GMC oxidoreductase 30 323 2.3E-86 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_0924 359220499b67d707e9a891f56dfb2903 580 SUPERFAMILY SSF51905 23 562 8.2E-89 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6196 8cef6c27ef8d72bf9b9b7473c822f62d 538 SUPERFAMILY SSF53756 226 478 2.46E-20 T 31-10-2018 Y89_6196 8cef6c27ef8d72bf9b9b7473c822f62d 538 Pfam PF13692 Glycosyl transferases group 1 374 457 2.0E-8 T 31-10-2018 Y89_6196 8cef6c27ef8d72bf9b9b7473c822f62d 538 Gene3D G3DSA:3.40.50.2000 304 516 3.0E-26 T 31-10-2018 Y89_0670 7196e827003972a2f36d185596059690 338 SUPERFAMILY SSF56112 26 318 7.96E-55 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0670 7196e827003972a2f36d185596059690 338 Gene3D G3DSA:3.30.200.20 5 103 8.9E-23 T 31-10-2018 Y89_0670 7196e827003972a2f36d185596059690 338 Gene3D G3DSA:3.90.1200.10 104 337 1.9E-67 T 31-10-2018 Y89_0670 7196e827003972a2f36d185596059690 338 Pfam PF01636 Phosphotransferase enzyme family 37 259 1.7E-35 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_3823 5f618a5368f20994aaa610059750d4c1 332 Pfam PF03561 Allantoicase repeat 187 327 1.2E-47 T 31-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y89_3823 5f618a5368f20994aaa610059750d4c1 332 Pfam PF03561 Allantoicase repeat 20 164 4.4E-46 T 31-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y89_3823 5f618a5368f20994aaa610059750d4c1 332 SUPERFAMILY SSF49785 5 168 4.68E-61 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_3823 5f618a5368f20994aaa610059750d4c1 332 Gene3D G3DSA:2.60.120.260 2 168 9.5E-57 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_3823 5f618a5368f20994aaa610059750d4c1 332 Gene3D G3DSA:2.60.120.260 169 332 1.5E-57 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_3823 5f618a5368f20994aaa610059750d4c1 332 TIGRFAM TIGR02961 allantoicase: allantoicase 11 328 3.3E-141 T 31-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y89_3823 5f618a5368f20994aaa610059750d4c1 332 Hamap MF_00813 Probable allantoicase [alc]. 1 330 47.612 T 31-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y89_3823 5f618a5368f20994aaa610059750d4c1 332 PIRSF PIRSF016516 1 331 2.4E-151 T 31-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 Y89_3823 5f618a5368f20994aaa610059750d4c1 332 SUPERFAMILY SSF49785 177 329 3.78E-56 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 Gene3D G3DSA:3.10.50.40 255 390 1.6E-36 T 31-10-2018 Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 Pfam PF13616 PPIC-type PPIASE domain 261 360 1.7E-28 T 31-10-2018 Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 300 321 - T 31-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 Gene3D G3DSA:1.10.4030.30 42 188 7.4E-15 T 31-10-2018 Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 Pfam PF13624 SurA N-terminal domain 1 164 2.4E-44 T 31-10-2018 Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 SUPERFAMILY SSF109998 40 236 6.41E-32 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily Y89_3524 901b99b0b39c7a66e059d99a49f8d4ba 621 SUPERFAMILY SSF54534 262 362 2.42E-32 T 31-10-2018 Y89_5406 2ef9a418e728003f2f9b2f39578f9177 187 Pfam PF13590 Domain of unknown function (DUF4136) 25 186 6.1E-30 T 31-10-2018 IPR025411 Domain of unknown function DUF4136 Y89_5406 2ef9a418e728003f2f9b2f39578f9177 187 Gene3D G3DSA:3.30.160.670 15 186 7.0E-33 T 31-10-2018 Y89_2734 c898f96fbb932aef7a4d06271ecae17d 332 Pfam PF16220 Domain of unknown function (DUF4880) 18 60 9.9E-14 T 31-10-2018 IPR032623 FecR, N-terminal Y89_2734 c898f96fbb932aef7a4d06271ecae17d 332 Gene3D G3DSA:2.60.120.1440 111 245 4.5E-15 T 31-10-2018 Y89_2734 c898f96fbb932aef7a4d06271ecae17d 332 Pfam PF04773 FecR protein 121 217 4.0E-18 T 31-10-2018 IPR006860 FecR protein Y89_2734 c898f96fbb932aef7a4d06271ecae17d 332 PIRSF PIRSF018266 8 332 2.7E-93 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_0499 5c19085198b925bdaff593a60d4ab21e 158 Gene3D G3DSA:3.40.630.30 1 158 2.0E-55 T 31-10-2018 Y89_0499 5c19085198b925bdaff593a60d4ab21e 158 Pfam PF00583 Acetyltransferase (GNAT) family 41 136 3.2E-19 T 31-10-2018 IPR000182 GNAT domain Y89_0499 5c19085198b925bdaff593a60d4ab21e 158 SUPERFAMILY SSF55729 3 152 5.57E-38 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2526 c78f53dcbbe64b86bfa4838a03c97604 450 Pfam PF07044 Protein of unknown function (DUF1329) 82 423 7.9E-103 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 255 2.4E-48 T 31-10-2018 Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 SUPERFAMILY SSF51735 1 255 7.72E-67 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.2E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2544 d55b80220c8bbd9af5d4cf8accb91f81 280 Gene3D G3DSA:3.40.50.720 1 268 7.0E-69 T 31-10-2018 Y89_5809 70394b6f889b7968cce56619dac237e9 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 250 3.3E-19 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5809 70394b6f889b7968cce56619dac237e9 251 SUPERFAMILY SSF53850 30 250 5.25E-36 T 31-10-2018 Y89_5809 70394b6f889b7968cce56619dac237e9 251 SMART SM00062 29 251 0.0032 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5809 70394b6f889b7968cce56619dac237e9 251 Gene3D G3DSA:3.40.190.10 120 211 2.2E-25 T 31-10-2018 Y89_5809 70394b6f889b7968cce56619dac237e9 251 Gene3D G3DSA:3.40.190.10 35 248 2.2E-25 T 31-10-2018 Y89_0908 a5a1a4cc3fe2f4937533e78ff5db19d7 169 Gene3D G3DSA:3.40.630.30 1 145 1.4E-19 T 31-10-2018 Y89_0908 a5a1a4cc3fe2f4937533e78ff5db19d7 169 Pfam PF00583 Acetyltransferase (GNAT) family 43 128 9.4E-13 T 31-10-2018 IPR000182 GNAT domain Y89_0908 a5a1a4cc3fe2f4937533e78ff5db19d7 169 SUPERFAMILY SSF55729 2 144 2.87E-24 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 Pfam PF02321 Outer membrane efflux protein 284 464 4.2E-27 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 Pfam PF02321 Outer membrane efflux protein 66 256 7.8E-28 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 466 6.9E-173 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 Gene3D G3DSA:2.20.200.10 103 355 2.9E-166 T 31-10-2018 Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 SUPERFAMILY SSF56954 1 468 7.32E-121 T 31-10-2018 Y89_0450 f2f597e3eef6d5a954896e00e9adabb3 485 Gene3D G3DSA:1.20.1600.10 57 466 2.9E-166 T 31-10-2018 Y89_4570 827aa0adf44b97d92763e8d17018d919 997 SUPERFAMILY SSF56601 705 979 2.04E-26 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4570 827aa0adf44b97d92763e8d17018d919 997 Pfam PF00912 Transglycosylase 118 314 8.1E-26 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4570 827aa0adf44b97d92763e8d17018d919 997 Gene3D G3DSA:3.40.710.10 773 986 2.4E-15 T 31-10-2018 Y89_4570 827aa0adf44b97d92763e8d17018d919 997 Gene3D G3DSA:1.10.3810.10 121 353 3.5E-7 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4570 827aa0adf44b97d92763e8d17018d919 997 SUPERFAMILY SSF53955 127 345 1.18E-9 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5156 02df6bcb47faca4408caff45d8b872c9 169 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 1.6E-4 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5156 02df6bcb47faca4408caff45d8b872c9 169 SUPERFAMILY SSF54523 10 142 5.65E-16 T 31-10-2018 Y89_5156 02df6bcb47faca4408caff45d8b872c9 169 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 2.6E-4 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5156 02df6bcb47faca4408caff45d8b872c9 169 Gene3D G3DSA:3.30.700.10 10 92 9.4E-5 T 31-10-2018 Y89_5156 02df6bcb47faca4408caff45d8b872c9 169 Pfam PF12019 Type II transport protein GspH 47 148 3.4E-14 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Y89_5408 237f57c3b34e10529ac058b9980fe45e 125 Gene3D G3DSA:3.40.1260.10 2 125 1.5E-27 T 31-10-2018 IPR027396 DsrEFH-like Y89_5408 237f57c3b34e10529ac058b9980fe45e 125 Pfam PF02635 DsrE/DsrF-like family 9 124 1.3E-15 T 31-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Y89_5408 237f57c3b34e10529ac058b9980fe45e 125 SUPERFAMILY SSF75169 10 125 5.38E-16 T 31-10-2018 IPR027396 DsrEFH-like Y89_3514 1565da6395c7de07811b9434f3648f95 148 Pfam PF00075 RNase H 5 143 5.7E-52 T 31-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Y89_3514 1565da6395c7de07811b9434f3648f95 148 Gene3D G3DSA:3.30.420.10 1 147 2.7E-62 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3514 1565da6395c7de07811b9434f3648f95 148 SUPERFAMILY SSF53098 5 143 3.16E-58 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3514 1565da6395c7de07811b9434f3648f95 148 Hamap MF_00042 Ribonuclease H [rnhA]. 4 148 33.806 T 31-10-2018 IPR022892 Ribonuclease HI GO:0004523 Y89_3507 7d6bf02f6c9bcb4b28d9fda9e1089d72 562 SUPERFAMILY SSF47226 8 125 1.0E-6 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 Y89_4871 4c613851506641db078c23376782665a 109 Gene3D G3DSA:3.30.70.120 1 96 7.3E-18 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y89_4871 4c613851506641db078c23376782665a 109 Pfam PF02641 Uncharacterized ACR, COG1993 6 85 7.6E-14 T 31-10-2018 IPR003793 Domain of unknown function DUF190 Y89_4871 4c613851506641db078c23376782665a 109 SUPERFAMILY SSF54913 1 100 3.11E-28 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y89_2960 259228d5ff7126de6aa9530113f9fb4a 284 Pfam PF00005 ABC transporter 31 169 2.1E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2960 259228d5ff7126de6aa9530113f9fb4a 284 SMART SM00382 39 220 2.1E-19 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2960 259228d5ff7126de6aa9530113f9fb4a 284 Gene3D G3DSA:3.40.50.300 10 242 3.2E-69 T 31-10-2018 Y89_2960 259228d5ff7126de6aa9530113f9fb4a 284 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2960 259228d5ff7126de6aa9530113f9fb4a 284 SUPERFAMILY SSF52540 11 243 5.6E-74 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3493 71b7e69f2719884ddd845119440ec604 193 Gene3D G3DSA:1.10.357.10 1 193 3.7E-84 T 31-10-2018 Y89_3493 71b7e69f2719884ddd845119440ec604 193 SUPERFAMILY SSF46689 3 80 5.13E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3493 71b7e69f2719884ddd845119440ec604 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 2.1E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3493 71b7e69f2719884ddd845119440ec604 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 2.1E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3493 71b7e69f2719884ddd845119440ec604 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 52 6.0E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3493 71b7e69f2719884ddd845119440ec604 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_3493 71b7e69f2719884ddd845119440ec604 193 SUPERFAMILY SSF48498 77 191 1.04E-35 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0535 02423319e9c42261a2faa503be21927e 174 Gene3D G3DSA:3.30.70.3460 32 173 7.0E-37 T 31-10-2018 Y89_2825 8740818cd20c2b3d122af76e018bc5aa 178 SUPERFAMILY SSF82185 12 134 4.45E-26 T 31-10-2018 Y89_2825 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 96 117 0.0022 T 31-10-2018 IPR011652 MORN variant Y89_2825 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 48 65 0.22 T 31-10-2018 IPR011652 MORN variant Y89_2825 8740818cd20c2b3d122af76e018bc5aa 178 Pfam PF07661 MORN repeat variant 120 141 0.23 T 31-10-2018 IPR011652 MORN variant Y89_2825 8740818cd20c2b3d122af76e018bc5aa 178 Gene3D G3DSA:2.20.110.10 42 114 2.0E-12 T 31-10-2018 Y89_3639 ea841b34085c0201f0a7216ea460d149 309 Gene3D G3DSA:2.30.330.10 220 307 4.6E-27 T 31-10-2018 IPR036429 SpoA-like superfamily Y89_3639 ea841b34085c0201f0a7216ea460d149 309 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 40 303 1.5E-64 T 31-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 Y89_3639 ea841b34085c0201f0a7216ea460d149 309 SUPERFAMILY SSF101801 232 308 1.7E-18 T 31-10-2018 IPR036429 SpoA-like superfamily Y89_3639 ea841b34085c0201f0a7216ea460d149 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 236 248 3.9E-8 T 31-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y89_3639 ea841b34085c0201f0a7216ea460d149 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 280 297 3.9E-8 T 31-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y89_3639 ea841b34085c0201f0a7216ea460d149 309 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 175 185 3.9E-8 T 31-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 Y89_3639 ea841b34085c0201f0a7216ea460d149 309 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 234 303 6.3E-17 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 ProSitePatterns PS00769 Transthyretin signature 2. 109 121 - T 31-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 SUPERFAMILY SSF49472 6 126 3.4E-43 T 31-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 Pfam PF00576 HIUase/Transthyretin family 13 125 2.0E-35 T 31-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 11 126 4.1E-40 T 31-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 Gene3D G3DSA:2.60.40.180 5 126 1.1E-40 T 31-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 PRINTS PR00189 Transthyretin signature 104 126 1.2E-7 T 31-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 PRINTS PR00189 Transthyretin signature 12 32 1.2E-7 T 31-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3820 98d83033f55aa3f4dc2c0c96f281c115 126 ProSitePatterns PS00768 Transthyretin signature 1. 16 31 - T 31-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Y89_3052 62552b04bbe8af343a01f10032d3ee4b 107 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.6E-25 T 31-10-2018 IPR007436 Protein of unknown function DUF485 Y89_0245 34679d82426ea6b4bcfb577b50de0eb5 271 Pfam PF01261 Xylose isomerase-like TIM barrel 22 221 6.2E-16 T 31-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y89_0245 34679d82426ea6b4bcfb577b50de0eb5 271 SUPERFAMILY SSF51658 5 270 2.02E-61 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_0245 34679d82426ea6b4bcfb577b50de0eb5 271 Gene3D G3DSA:3.20.20.150 1 271 7.6E-53 T 31-10-2018 Y89_0567 06637cf90e730f64e7dd920773302280 434 Pfam PF01794 Ferric reductase like transmembrane component 40 165 5.2E-19 T 31-10-2018 IPR013130 Ferric reductase transmembrane component-like domain Y89_0567 06637cf90e730f64e7dd920773302280 434 Pfam PF00175 Oxidoreductase NAD-binding domain 315 411 2.2E-6 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Y89_0567 06637cf90e730f64e7dd920773302280 434 SUPERFAMILY SSF52343 305 431 2.62E-24 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_0567 06637cf90e730f64e7dd920773302280 434 Gene3D G3DSA:2.40.30.10 204 300 8.3E-15 T 31-10-2018 Y89_0567 06637cf90e730f64e7dd920773302280 434 Pfam PF08022 FAD-binding domain 218 300 5.1E-8 T 31-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 Y89_0567 06637cf90e730f64e7dd920773302280 434 SUPERFAMILY SSF63380 211 302 4.48E-19 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_0567 06637cf90e730f64e7dd920773302280 434 Gene3D G3DSA:3.40.50.80 309 434 3.2E-22 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Y89_0567 06637cf90e730f64e7dd920773302280 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 297 306 3.0E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_0567 06637cf90e730f64e7dd920773302280 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 399 407 3.0E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_0567 06637cf90e730f64e7dd920773302280 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 250 3.0E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_0567 06637cf90e730f64e7dd920773302280 434 PRINTS PR00410 Phenol hydroxylase reductase family signature 313 332 3.0E-5 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 SUPERFAMILY SSF50249 13 151 1.05E-35 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 258 275 1.6E-37 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 240 253 1.6E-37 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 1.6E-37 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 195 205 1.6E-37 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 1.6E-37 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 Pfam PF01336 OB-fold nucleic acid binding domain 69 142 2.9E-7 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 SUPERFAMILY SSF55681 158 498 1.55E-123 T 31-10-2018 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 Gene3D G3DSA:2.40.50.140 6 152 5.3E-33 T 31-10-2018 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 500 43.703 T 31-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 Pfam PF00152 tRNA synthetases class II (D, K and N) 159 497 1.7E-83 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 16 500 3.6E-202 T 31-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Y89_1326 406a6e34cd9a2822760f294ca17e7b84 501 Gene3D G3DSA:3.30.930.10 153 497 1.0E-133 T 31-10-2018 Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 211 1.3E-87 T 31-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 SUPERFAMILY SSF47616 81 211 8.1E-27 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 Gene3D G3DSA:1.20.1050.10 88 212 1.3E-42 T 31-10-2018 Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 SUPERFAMILY SSF52833 1 90 1.17E-23 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 Gene3D G3DSA:3.40.30.10 1 87 2.5E-23 T 31-10-2018 Y89_2728 68968c322e52fb57cc246f8aaa12c7a5 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 2.1E-13 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3941 e41ba65dee040936f390b598be241e62 807 SUPERFAMILY SSF82861 540 624 3.92E-13 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y89_3941 e41ba65dee040936f390b598be241e62 807 SUPERFAMILY SSF50182 626 691 6.21E-16 T 31-10-2018 IPR010920 LSM domain superfamily Y89_3941 e41ba65dee040936f390b598be241e62 807 Gene3D G3DSA:3.30.70.100 699 786 5.2E-11 T 31-10-2018 Y89_3941 e41ba65dee040936f390b598be241e62 807 SUPERFAMILY SSF82689 700 792 4.18E-14 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y89_3941 e41ba65dee040936f390b598be241e62 807 Pfam PF00924 Mechanosensitive ion channel 584 781 4.3E-42 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_3941 e41ba65dee040936f390b598be241e62 807 Gene3D G3DSA:2.30.30.60 641 689 1.1E-12 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_3941 e41ba65dee040936f390b598be241e62 807 Pfam PF12607 Protein of unknown function (DUF3772) 140 200 4.3E-19 T 31-10-2018 IPR022249 Domain of unknown function DUF3772 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Pfam PF02817 e3 binding domain 115 149 2.6E-13 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Gene3D G3DSA:4.10.320.10 104 155 4.1E-13 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 163 369 4.4E-47 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Gene3D G3DSA:2.40.50.100 2 79 8.3E-23 T 31-10-2018 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Pfam PF00364 Biotin-requiring enzyme 3 73 1.6E-19 T 31-10-2018 IPR000089 Biotin/lipoyl attachment Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 Gene3D G3DSA:3.30.559.10 165 370 4.1E-51 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 SUPERFAMILY SSF51230 2 84 1.44E-24 T 31-10-2018 IPR011053 Single hybrid motif Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 SUPERFAMILY SSF52777 155 368 6.23E-55 T 31-10-2018 Y89_1592 0fc108fa0006eeeedc4fd5e7d5947453 370 SUPERFAMILY SSF47005 112 153 8.5E-10 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Y89_6255 6a354c0665ee637a9396e78cba42eb9c 166 Pfam PF11743 Protein of unknown function (DUF3301) 38 131 4.1E-34 T 31-10-2018 IPR021732 Protein of unknown function DUF3301 Y89_5151 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 241 40.593 T 31-10-2018 IPR017689 Outer membrane protein assembly factor BamD Y89_5151 fa6ae1f2ea2bd43fe64f4296d04f4132 341 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 245 2.8E-86 T 31-10-2018 IPR017689 Outer membrane protein assembly factor BamD Y89_5151 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Gene3D G3DSA:1.25.40.10 30 252 1.3E-56 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5151 fa6ae1f2ea2bd43fe64f4296d04f4132 341 Pfam PF13525 Outer membrane lipoprotein 29 233 2.4E-80 T 31-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Y89_5770 078f3519f141c0116825212a872d247a 480 PIRSF PIRSF002744 1 464 6.7E-100 T 31-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Y89_5770 078f3519f141c0116825212a872d247a 480 Gene3D G3DSA:1.10.4160.10 7 461 3.1E-43 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_5770 078f3519f141c0116825212a872d247a 480 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 440 1.8E-45 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_4016 b8f142c50b29355f2efcdfd0d6bfffd0 370 Gene3D G3DSA:3.20.20.70 1 369 1.1E-135 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4016 b8f142c50b29355f2efcdfd0d6bfffd0 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 342 5.2E-89 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_4016 b8f142c50b29355f2efcdfd0d6bfffd0 370 SUPERFAMILY SSF51395 2 365 5.5E-121 T 31-10-2018 Y89_4029 663000ea249daa0e8e0b6fa48708ff5b 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 4.8E-88 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y89_4029 663000ea249daa0e8e0b6fa48708ff5b 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 17.448 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y89_4029 663000ea249daa0e8e0b6fa48708ff5b 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 31-10-2018 IPR030470 UbiA prenyltransferase conserved site Y89_4029 663000ea249daa0e8e0b6fa48708ff5b 296 Pfam PF01040 UbiA prenyltransferase family 19 266 3.1E-57 T 31-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y89_4029 663000ea249daa0e8e0b6fa48708ff5b 296 Gene3D G3DSA:1.10.357.140 13 168 1.1E-20 T 31-10-2018 Y89_1894 ca4ad8537c1ae853fc7304fb0949be29 442 SUPERFAMILY SSF52266 211 419 5.16E-51 T 31-10-2018 Y89_1894 ca4ad8537c1ae853fc7304fb0949be29 442 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 218 413 4.2E-27 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain Y89_1894 ca4ad8537c1ae853fc7304fb0949be29 442 Gene3D G3DSA:3.40.50.1110 178 425 1.7E-35 T 31-10-2018 IPR036514 SGNH hydrolase superfamily Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 Gene3D G3DSA:1.10.10.10 1 140 7.2E-41 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 SMART SM00347 25 125 7.7E-24 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 7 136 1.5E-61 T 31-10-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 Pfam PF01047 MarR family 32 90 1.5E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 SUPERFAMILY SSF46785 7 137 8.85E-31 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 5.6E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 5.6E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_0887 2c54ecfd0cd8260a5d79acda80ea9c5f 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 5.6E-5 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 Gene3D G3DSA:3.10.310.70 128 239 1.7E-94 T 31-10-2018 Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 SUPERFAMILY SSF51556 108 538 3.37E-43 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 SUPERFAMILY SSF51338 42 584 3.17E-26 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 Pfam PF07969 Amidohydrolase family 97 579 1.3E-120 T 31-10-2018 IPR013108 Amidohydrolase 3 Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 Gene3D G3DSA:2.30.40.10 56 554 1.7E-94 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_2388 e16bcab43fde2c8bed20b28b25e3bc7b 659 Gene3D G3DSA:3.20.20.140 109 538 1.7E-94 T 31-10-2018 Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 Pfam PF03466 LysR substrate binding domain 89 293 2.0E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 SUPERFAMILY SSF53850 90 294 1.66E-43 T 31-10-2018 Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:3.40.190.10 164 264 2.7E-66 T 31-10-2018 Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 SUPERFAMILY SSF46785 4 113 3.53E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:3.40.190.10 93 290 2.7E-66 T 31-10-2018 Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.8E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3467 de9ede1c9851ec29243558f7a32597a8 295 Gene3D G3DSA:1.10.10.10 1 87 4.2E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2065 73db1db17e6ca787da4aa5206fb31367 210 Pfam PF16105 Domain of unknown function (DUF4823) 52 199 5.2E-60 T 31-10-2018 IPR032248 Protein of unknown function DUF4823 Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 19 76 1.9E-6 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 Pfam PF00043 Glutathione S-transferase, C-terminal domain 104 193 2.4E-13 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 Gene3D G3DSA:3.40.30.10 6 196 3.3E-42 T 31-10-2018 Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 SUPERFAMILY SSF52833 4 77 7.78E-12 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 SUPERFAMILY SSF47616 85 202 6.26E-20 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_3873 882b79a8b707c80cb005f7993e255d5b 228 Gene3D G3DSA:1.20.1050.10 83 192 3.3E-42 T 31-10-2018 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 SUPERFAMILY SSF55729 1 193 2.75E-31 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 115 136 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 137 158 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 159 176 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 65 83 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 PRINTS PR01549 Autoinducer synthesis protein signature 42 64 4.1E-25 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 Gene3D G3DSA:3.40.630.30 1 201 7.0E-44 T 31-10-2018 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 Pfam PF00765 Autoinducer synthase 13 179 1.7E-20 T 31-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_1530 07ab6d9a348c41d361fb0ab6e3038aaf 201 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 51 - T 31-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 Y89_2747 e2514bb0d82e243683afdce4678425f1 526 SUPERFAMILY SSF81296 146 277 1.08E-18 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_2747 e2514bb0d82e243683afdce4678425f1 526 Gene3D G3DSA:3.40.50.1820 274 524 1.2E-71 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2747 e2514bb0d82e243683afdce4678425f1 526 SUPERFAMILY SSF53474 282 522 7.07E-46 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2747 e2514bb0d82e243683afdce4678425f1 526 Pfam PF00756 Putative esterase 300 520 4.2E-33 T 31-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 Y89_2747 e2514bb0d82e243683afdce4678425f1 526 Gene3D G3DSA:2.60.40.10 142 264 5.8E-7 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_2747 e2514bb0d82e243683afdce4678425f1 526 Pfam PF11806 Domain of unknown function (DUF3327) 171 281 1.2E-18 T 31-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 Y89_3948 bca5a641605ef9d91bccfc16bca38e03 135 Gene3D G3DSA:3.10.450.50 3 128 7.6E-35 T 31-10-2018 Y89_3948 bca5a641605ef9d91bccfc16bca38e03 135 SUPERFAMILY SSF54427 5 128 2.24E-31 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3948 bca5a641605ef9d91bccfc16bca38e03 135 Pfam PF07366 SnoaL-like polyketide cyclase 9 127 1.3E-37 T 31-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 Y89_0536 c57d3e2c9848a8e1e817bb565ec8b3d8 150 Gene3D G3DSA:1.10.10.10 1 52 3.4E-7 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0536 c57d3e2c9848a8e1e817bb565ec8b3d8 150 SMART SM00344 1 108 0.0056 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_0536 c57d3e2c9848a8e1e817bb565ec8b3d8 150 Gene3D G3DSA:3.30.70.3460 64 141 7.1E-20 T 31-10-2018 Y89_0536 c57d3e2c9848a8e1e817bb565ec8b3d8 150 Pfam PF13404 AsnC-type helix-turn-helix domain 1 45 3.4E-8 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_4507 efb84f3c13d281faf77b5ee3653d0e22 207 Gene3D G3DSA:3.40.50.360 15 207 3.7E-42 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4507 efb84f3c13d281faf77b5ee3653d0e22 207 Pfam PF02525 Flavodoxin-like fold 17 202 3.7E-32 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_4507 efb84f3c13d281faf77b5ee3653d0e22 207 SUPERFAMILY SSF52218 17 207 1.71E-44 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 154 168 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 124 140 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 4.0E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 Pfam PF13416 Bacterial extracellular solute-binding protein 43 326 1.8E-35 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_0319 5391c0ddf46cb86674335997bb110489 365 Gene3D G3DSA:3.40.190.10 133 360 7.9E-138 T 31-10-2018 Y89_0319 5391c0ddf46cb86674335997bb110489 365 PIRSF PIRSF019574 1 365 3.0E-143 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0319 5391c0ddf46cb86674335997bb110489 365 SUPERFAMILY SSF53850 27 364 3.83E-103 T 31-10-2018 Y89_0319 5391c0ddf46cb86674335997bb110489 365 Gene3D G3DSA:3.40.190.10 30 331 7.9E-138 T 31-10-2018 Y89_3768 7d20b397a898b8b9488925d1860e2370 117 Gene3D G3DSA:3.30.1330.40 2 116 2.6E-35 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_3768 7d20b397a898b8b9488925d1860e2370 117 SUPERFAMILY SSF55298 14 116 9.42E-30 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_3768 7d20b397a898b8b9488925d1860e2370 117 Pfam PF01042 Endoribonuclease L-PSP 17 114 1.5E-21 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 164 185 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 320 339 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 111 137 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 380 399 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 139 158 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 348 365 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 PRINTS PR00447 Natural resistance-associated macrophage protein signature 216 239 8.4E-59 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 23 436 40.147 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 30 404 1.3E-113 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_4548 65be1ef0735195f5cdedb4280425803d 438 Pfam PF01566 Natural resistance-associated macrophage protein 52 409 7.7E-127 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 Y89_3446 f78103f1661d20f171982ab9c0141716 184 SMART SM00530 13 68 2.4E-5 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3446 f78103f1661d20f171982ab9c0141716 184 SUPERFAMILY SSF47413 9 66 5.63E-9 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_3446 f78103f1661d20f171982ab9c0141716 184 SUPERFAMILY SSF55785 69 128 3.05E-5 T 31-10-2018 IPR035965 PAS domain superfamily Y89_3446 f78103f1661d20f171982ab9c0141716 184 Gene3D G3DSA:1.10.260.40 5 75 4.3E-9 T 31-10-2018 Y89_3446 f78103f1661d20f171982ab9c0141716 184 Pfam PF13560 Helix-turn-helix domain 10 67 3.2E-8 T 31-10-2018 Y89_5224 6fe6c99cd0ec931989e57c920aaafeba 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 277 1.7E-65 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_5224 6fe6c99cd0ec931989e57c920aaafeba 332 Gene3D G3DSA:3.40.190.170 27 329 1.4E-79 T 31-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Y89_5224 6fe6c99cd0ec931989e57c920aaafeba 332 PIRSF PIRSF006470 1 331 8.3E-118 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_5224 6fe6c99cd0ec931989e57c920aaafeba 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 314 7.7E-96 T 31-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Y89_5627 047f4679c3ee5444872ee47aa33e3d5d 289 Pfam PF02666 Phosphatidylserine decarboxylase 65 283 3.5E-60 T 31-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Y89_5627 047f4679c3ee5444872ee47aa33e3d5d 289 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 12 287 50.31 T 31-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Y89_5627 047f4679c3ee5444872ee47aa33e3d5d 289 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 51 285 7.2E-80 T 31-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 Gene3D G3DSA:3.40.640.10 16 262 2.4E-162 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 SUPERFAMILY SSF53383 5 391 6.12E-111 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 53.608 T 31-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 PIRSF PIRSF005572 2 384 4.6E-131 T 31-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 Gene3D G3DSA:3.90.1150.10 5 376 2.4E-162 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 Pfam PF00266 Aminotransferase class-V 5 368 4.8E-84 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_1212 59782e5ebe6157e88a79deff7ede8e8a 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 2.6E-234 T 31-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Y89_3094 ec3f89d4998af548ffe5cd042bda98c9 316 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 206 212 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Y89_3094 ec3f89d4998af548ffe5cd042bda98c9 316 Pfam PF05175 Methyltransferase small domain 131 252 7.7E-16 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Y89_3094 ec3f89d4998af548ffe5cd042bda98c9 316 Gene3D G3DSA:3.40.50.150 104 260 1.4E-29 T 31-10-2018 Y89_3094 ec3f89d4998af548ffe5cd042bda98c9 316 SUPERFAMILY SSF53335 77 274 2.54E-30 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3737 357a186eed60f9055ca609562042fcb8 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 18 269 1.3E-92 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_3737 357a186eed60f9055ca609562042fcb8 273 Gene3D G3DSA:3.20.20.60 8 273 1.0E-94 T 31-10-2018 Y89_3737 357a186eed60f9055ca609562042fcb8 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 2.1E-99 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_3737 357a186eed60f9055ca609562042fcb8 273 SUPERFAMILY SSF51621 10 269 2.98E-94 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_3737 357a186eed60f9055ca609562042fcb8 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 40.534 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_3737 357a186eed60f9055ca609562042fcb8 273 PIRSF PIRSF000388 1 272 4.8E-99 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Y89_0917 b2fa754087168fbd05251386f1e2fb70 276 Gene3D G3DSA:3.20.20.150 5 276 7.0E-87 T 31-10-2018 Y89_0917 b2fa754087168fbd05251386f1e2fb70 276 SUPERFAMILY SSF51658 28 206 6.33E-13 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_0917 b2fa754087168fbd05251386f1e2fb70 276 Hamap MF_00697 UPF0276 protein . 8 276 45.372 T 31-10-2018 IPR007801 Uncharacterised protein family UPF0276 Y89_0917 b2fa754087168fbd05251386f1e2fb70 276 Pfam PF05114 Protein of unknown function (DUF692) 8 268 2.9E-98 T 31-10-2018 IPR007801 Uncharacterised protein family UPF0276 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 SUPERFAMILY SSF53697 84 278 2.43E-37 T 31-10-2018 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Gene3D G3DSA:1.10.10.10 1 79 4.3E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 76 2.8E-24 T 31-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 ProSitePatterns PS00356 LacI-type HTH domain signature. 37 55 - T 31-10-2018 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Gene3D G3DSA:3.40.50.10490 93 274 4.4E-39 T 31-10-2018 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 SUPERFAMILY SSF46689 2 76 2.87E-20 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6178 b93eb4b6e1fa0f6a301cd43eacb1ce09 293 Pfam PF01380 SIS domain 125 252 8.1E-16 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_4237 8df6c76470c7ea553c3fe0997492cc67 774 SUPERFAMILY SSF53649 222 534 9.76E-47 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_4237 8df6c76470c7ea553c3fe0997492cc67 774 Pfam PF00884 Sulfatase 224 501 1.4E-36 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_4237 8df6c76470c7ea553c3fe0997492cc67 774 Gene3D G3DSA:3.40.720.10 220 503 5.9E-40 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 8 170 7.6E-84 T 31-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 SMART SM00852 15 159 9.0E-28 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 Gene3D G3DSA:3.40.980.10 3 173 2.6E-47 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 PIRSF PIRSF006443 1 167 2.7E-59 T 31-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 Pfam PF00994 Probable molybdopterin binding domain 15 156 7.7E-31 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 152 2.1E-31 T 31-10-2018 IPR001453 MoaB/Mog domain Y89_1108 ea70ca8343109d60acf0c55614fb0dac 185 SUPERFAMILY SSF53218 8 169 9.03E-45 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily Y89_4836 91a5b80612eedb13db4348d9f4deef0d 258 Pfam PF01553 Acyltransferase 61 181 7.4E-21 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_4836 91a5b80612eedb13db4348d9f4deef0d 258 SUPERFAMILY SSF69593 46 227 1.96E-25 T 31-10-2018 Y89_4836 91a5b80612eedb13db4348d9f4deef0d 258 SMART SM00563 72 183 2.1E-28 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_2023 13e95127b59357ab145b2e7087de4ef5 223 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.649 T 31-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 Y89_2023 13e95127b59357ab145b2e7087de4ef5 223 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 7.1E-60 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_2023 13e95127b59357ab145b2e7087de4ef5 223 PIRSF PIRSF006102 3 213 2.1E-65 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_2023 13e95127b59357ab145b2e7087de4ef5 223 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 207 1.7E-108 T 31-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 Pfam PF01252 Signal peptidase (SPase) II 16 158 3.3E-39 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 5.1E-19 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 139 155 5.1E-19 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 5.1E-19 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 TIGRFAM TIGR00077 lspA: signal peptidase II 10 162 4.6E-42 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_5166 1b1f2cf79628cceb0f3380e111889368 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 164 17.719 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Y89_3675 aa67ba0526521bd7f841e7dcfdaf206f 135 Pfam PF04965 Gene 25-like lysozyme 26 113 1.4E-15 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y89_3675 aa67ba0526521bd7f841e7dcfdaf206f 135 Gene3D G3DSA:3.10.450.40 6 123 1.1E-6 T 31-10-2018 Y89_3675 aa67ba0526521bd7f841e7dcfdaf206f 135 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 134 2.1E-38 T 31-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y89_3675 aa67ba0526521bd7f841e7dcfdaf206f 135 SUPERFAMILY SSF160719 24 128 4.45E-19 T 31-10-2018 Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 SUPERFAMILY SSF88659 117 174 1.18E-11 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 173 2.3E-12 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 Pfam PF08281 Sigma-70, region 4 122 173 3.7E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 Pfam PF04542 Sigma-70 region 2 29 88 1.3E-4 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 SUPERFAMILY SSF88946 27 87 3.49E-5 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2365 2196bb27585f6c7942a0bd21f86cd2db 179 Gene3D G3DSA:1.10.10.10 97 178 5.1E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2080 4318f16e27272734341b899a3c9dc70d 214 Pfam PF13519 von Willebrand factor type A domain 59 164 4.0E-9 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_2080 4318f16e27272734341b899a3c9dc70d 214 Gene3D G3DSA:3.40.50.410 58 213 2.3E-11 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_2080 4318f16e27272734341b899a3c9dc70d 214 SUPERFAMILY SSF53300 60 176 2.83E-14 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_0246 35315f548a31df78a0f34c1373ec7507 292 SUPERFAMILY SSF103481 195 291 1.44E-14 T 31-10-2018 Y89_0246 35315f548a31df78a0f34c1373ec7507 292 Pfam PF00892 EamA-like transporter family 159 286 3.4E-8 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0246 35315f548a31df78a0f34c1373ec7507 292 Pfam PF00892 EamA-like transporter family 16 148 2.6E-15 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0246 35315f548a31df78a0f34c1373ec7507 292 SUPERFAMILY SSF103481 53 152 1.96E-14 T 31-10-2018 Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 SMART SM00530 31 86 6.1E-14 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 SUPERFAMILY SSF51182 103 194 4.46E-16 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 Gene3D G3DSA:1.10.260.40 12 93 8.0E-17 T 31-10-2018 Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 Pfam PF07883 Cupin domain 143 193 8.8E-9 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 Gene3D G3DSA:2.60.120.10 110 198 1.2E-18 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 Pfam PF01381 Helix-turn-helix 32 81 6.9E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3990 4f0dea6e1bd489cf2ed6412700b9aa9a 199 SUPERFAMILY SSF47413 26 87 1.13E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2024 a6ad112fb16b83ef9937f49345302b92 202 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 201 8.9E-108 T 31-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y89_2024 a6ad112fb16b83ef9937f49345302b92 202 PIRSF PIRSF006102 1 202 6.3E-59 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_2024 a6ad112fb16b83ef9937f49345302b92 202 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 200 3.4E-56 T 31-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Y89_2024 a6ad112fb16b83ef9937f49345302b92 202 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 202 29.042 T 31-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PIRSF PIRSF500210 1 336 5.6E-128 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 Gene3D G3DSA:3.40.190.80 200 336 8.5E-55 T 31-10-2018 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 310 335 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 2.3E-74 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 196 1.7E-60 T 31-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 PIRSF PIRSF000904 1 336 1.5E-126 T 31-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 336 47.094 T 31-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Y89_5781 9bca65c961b51172756afe24be41ad17 336 Gene3D G3DSA:3.30.540.10 1 199 6.3E-71 T 31-10-2018 Y89_5781 9bca65c961b51172756afe24be41ad17 336 SUPERFAMILY SSF56655 2 334 6.35E-117 T 31-10-2018 Y89_4208 75deb0bba113483a6fbe8845b8327219 444 Gene3D G3DSA:1.20.1250.20 12 216 5.1E-42 T 31-10-2018 Y89_4208 75deb0bba113483a6fbe8845b8327219 444 Gene3D G3DSA:1.20.1250.20 230 422 1.3E-28 T 31-10-2018 Y89_4208 75deb0bba113483a6fbe8845b8327219 444 SUPERFAMILY SSF103473 14 418 4.05E-57 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4208 75deb0bba113483a6fbe8845b8327219 444 Pfam PF07690 Major Facilitator Superfamily 27 387 1.6E-41 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4208 75deb0bba113483a6fbe8845b8327219 444 PIRSF PIRSF002808 5 435 2.9E-80 T 31-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 Y89_0528 73340538e3578e541331d75af519a704 598 Gene3D G3DSA:2.40.110.10 160 280 4.1E-97 T 31-10-2018 Y89_0528 73340538e3578e541331d75af519a704 598 SUPERFAMILY SSF47203 286 474 1.77E-52 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_0528 73340538e3578e541331d75af519a704 598 SUPERFAMILY SSF56645 36 279 1.44E-57 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_0528 73340538e3578e541331d75af519a704 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 450 1.7E-25 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_0528 73340538e3578e541331d75af519a704 598 Gene3D G3DSA:1.20.140.10 281 448 4.1E-97 T 31-10-2018 Y89_0528 73340538e3578e541331d75af519a704 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 591 1.9E-34 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Y89_0528 73340538e3578e541331d75af519a704 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 270 7.6E-17 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_0528 73340538e3578e541331d75af519a704 598 Gene3D G3DSA:1.10.540.10 44 159 4.1E-97 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0528 73340538e3578e541331d75af519a704 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 29 1.3E-8 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Y89_0528 73340538e3578e541331d75af519a704 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 156 2.2E-11 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 PIRSF PIRSF039085 4 257 2.1E-116 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 Pfam PF00005 ABC transporter 23 182 2.1E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 SMART SM00382 32 230 1.6E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 Gene3D G3DSA:3.40.50.300 4 257 6.8E-79 T 31-10-2018 Y89_5826 c73a94fe37e0036f271c8ba150568efd 257 SUPERFAMILY SSF52540 8 252 8.23E-75 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3582 31af409f5efc7a6ba4b03dcf6e89ceb8 358 SUPERFAMILY SSF51569 8 349 2.56E-133 T 31-10-2018 Y89_3582 31af409f5efc7a6ba4b03dcf6e89ceb8 358 Pfam PF00793 DAHP synthetase I family 42 339 1.8E-93 T 31-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_3582 31af409f5efc7a6ba4b03dcf6e89ceb8 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 7 349 7.7E-149 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_3582 31af409f5efc7a6ba4b03dcf6e89ceb8 358 PIRSF PIRSF001361 1 355 4.2E-156 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_3582 31af409f5efc7a6ba4b03dcf6e89ceb8 358 Gene3D G3DSA:3.20.20.70 2 351 7.6E-150 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1615 5d479990f69a80436f86ed872fbb4dc1 304 Gene3D G3DSA:3.40.50.300 1 225 1.2E-57 T 31-10-2018 Y89_1615 5d479990f69a80436f86ed872fbb4dc1 304 Pfam PF00005 ABC transporter 20 156 3.1E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1615 5d479990f69a80436f86ed872fbb4dc1 304 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1615 5d479990f69a80436f86ed872fbb4dc1 304 SUPERFAMILY SSF52540 3 218 3.62E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1615 5d479990f69a80436f86ed872fbb4dc1 304 SMART SM00382 28 214 8.5E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 663 0.0 T 31-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Gene3D G3DSA:3.40.50.970 326 537 3.5E-83 T 31-10-2018 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 333 8.0E-166 T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Gene3D G3DSA:3.40.50.970 3 325 4.3E-132 T 31-10-2018 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 SUPERFAMILY SSF52922 533 664 1.83E-42 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Gene3D G3DSA:3.40.50.920 538 665 5.4E-42 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 SUPERFAMILY SSF52518 5 320 1.63E-121 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Pfam PF02780 Transketolase, C-terminal domain 540 655 8.4E-16 T 31-10-2018 IPR033248 Transketolase, C-terminal domain Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 SUPERFAMILY SSF52518 347 526 1.01E-67 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 31-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 SMART SM00861 354 525 1.3E-69 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_0570 11b86f33b60aabd3ead21774a2a4f8d9 665 Pfam PF02779 Transketolase, pyrimidine binding domain 353 525 1.3E-45 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Y89_3688 211348bd035f7308efe97b63603e1212 652 Pfam PF00672 HAMP domain 325 371 4.8E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3688 211348bd035f7308efe97b63603e1212 652 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 436 618 7.8E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3688 211348bd035f7308efe97b63603e1212 652 SUPERFAMILY SSF58104 343 652 5.1E-79 T 31-10-2018 Y89_3688 211348bd035f7308efe97b63603e1212 652 SMART SM01358 37 301 5.7E-39 T 31-10-2018 IPR032255 Helical bimodular sensor domain Y89_3688 211348bd035f7308efe97b63603e1212 652 SMART SM00304 323 375 1.4E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3688 211348bd035f7308efe97b63603e1212 652 SMART SM00304 376 428 22.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_3688 211348bd035f7308efe97b63603e1212 652 SMART SM00283 390 651 7.8E-85 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3688 211348bd035f7308efe97b63603e1212 652 Gene3D G3DSA:1.10.287.950 323 652 2.3E-78 T 31-10-2018 Y89_5404 3ca6f5319cd0dd51e101db06beda7d5a 206 Pfam PF13590 Domain of unknown function (DUF4136) 56 205 9.7E-19 T 31-10-2018 IPR025411 Domain of unknown function DUF4136 Y89_5404 3ca6f5319cd0dd51e101db06beda7d5a 206 Gene3D G3DSA:3.30.160.670 50 204 3.2E-19 T 31-10-2018 Y89_5737 d671422f9ab5d8423cd8f0ff25039ee2 533 SUPERFAMILY SSF56112 97 438 1.86E-47 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5737 d671422f9ab5d8423cd8f0ff25039ee2 533 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 533 54.219 T 31-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Y89_5737 d671422f9ab5d8423cd8f0ff25039ee2 533 Pfam PF03109 ABC1 family 114 233 1.7E-36 T 31-10-2018 IPR004147 UbiB domain Y89_5737 d671422f9ab5d8423cd8f0ff25039ee2 533 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 447 1.6E-177 T 31-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 Gene3D G3DSA:3.30.590.10 102 443 2.9E-128 T 31-10-2018 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 Gene3D G3DSA:3.10.20.70 1 101 6.6E-44 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 Pfam PF16952 Glutamine synthetase N-terminal domain 3 104 1.3E-44 T 31-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 SMART SM01230 105 353 2.0E-67 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 SUPERFAMILY SSF55931 105 440 1.18E-80 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_6248 a79baeb76eea8cc705e481f19a88fdd1 443 Pfam PF00120 Glutamine synthetase, catalytic domain 106 426 1.9E-88 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_2564 c2e78e943c68777c00ac7766e58cf65d 191 Gene3D G3DSA:3.10.450.50 14 191 1.8E-54 T 31-10-2018 Y89_2564 c2e78e943c68777c00ac7766e58cf65d 191 Pfam PF00866 Ring hydroxylating beta subunit 39 182 9.5E-34 T 31-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 Y89_2564 c2e78e943c68777c00ac7766e58cf65d 191 SUPERFAMILY SSF54427 24 191 3.98E-40 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_0608 f266d899e12311c029ba2c9e8d5209b3 134 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 127 7.5E-47 T 31-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system Y89_0608 f266d899e12311c029ba2c9e8d5209b3 134 Gene3D G3DSA:3.30.160.250 1 84 4.2E-27 T 31-10-2018 Y89_0608 f266d899e12311c029ba2c9e8d5209b3 134 SUPERFAMILY SSF143100 1 66 1.44E-20 T 31-10-2018 IPR035069 TTHA1013/TTHA0281-like Y89_4080 0c298771cdaf073ec5d8bd498b000744 679 Pfam PF04632 Fusaric acid resistance protein family 23 660 1.2E-186 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_3628 91b3b2839b4b0328e0dec4cae7487664 98 TIGRFAM TIGR02573 LcrG_PcrG: type III secretion protein LcrG 9 98 5.8E-42 T 31-10-2018 IPR009863 Type III secretion protein, LcrG Y89_3628 91b3b2839b4b0328e0dec4cae7487664 98 ProDom PD020116 PLASMID ACRG TYPE III G SECRETION REGULATOR LCRG LOCUS RESPONSE 9 98 4.0E-18 T 31-10-2018 IPR009863 Type III secretion protein, LcrG Y89_3628 91b3b2839b4b0328e0dec4cae7487664 98 Pfam PF07216 LcrG protein 9 98 9.0E-42 T 31-10-2018 IPR009863 Type III secretion protein, LcrG Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF50129 2 185 1.08E-72 T 31-10-2018 IPR011032 GroES-like superfamily Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Pfam PF00107 Zinc-binding dehydrogenase 198 325 5.4E-27 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Gene3D G3DSA:3.40.50.720 175 313 1.4E-154 T 31-10-2018 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.9E-224 T 31-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Gene3D G3DSA:3.90.180.10 7 365 1.4E-154 T 31-10-2018 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SMART SM00829 11 368 2.3E-4 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 2.9E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF50129 320 370 5.18E-11 T 31-10-2018 IPR011032 GroES-like superfamily Y89_1397 8e9564a9cac7d4e23f9a1af9ecfc7911 370 SUPERFAMILY SSF51735 161 334 8.0E-48 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4740 967aca3d48e21703f991f1645a7dd62c 139 Gene3D G3DSA:3.30.420.270 66 133 1.8E-12 T 31-10-2018 Y89_4740 967aca3d48e21703f991f1645a7dd62c 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 17 136 1.1E-28 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Y89_5811 6bf374275123eaebdae6ac616fd95792 248 SUPERFAMILY SSF53850 25 248 3.49E-37 T 31-10-2018 Y89_5811 6bf374275123eaebdae6ac616fd95792 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 248 1.2E-20 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5811 6bf374275123eaebdae6ac616fd95792 248 Gene3D G3DSA:3.40.190.10 118 209 2.7E-27 T 31-10-2018 Y89_5811 6bf374275123eaebdae6ac616fd95792 248 Gene3D G3DSA:3.40.190.10 47 248 2.7E-27 T 31-10-2018 Y89_1222 d663f507962f31669dffbe7f4484572f 347 SMART SM00530 21 82 4.5E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_1222 d663f507962f31669dffbe7f4484572f 347 Pfam PF13464 Domain of unknown function (DUF4115) 272 345 7.8E-24 T 31-10-2018 IPR025194 Domain of unknown function DUF4115 Y89_1222 d663f507962f31669dffbe7f4484572f 347 Pfam PF13413 Helix-turn-helix domain 22 82 1.5E-21 T 31-10-2018 Y89_1222 d663f507962f31669dffbe7f4484572f 347 SUPERFAMILY SSF47413 17 86 3.85E-8 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_1222 d663f507962f31669dffbe7f4484572f 347 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 32 58 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Y89_1222 d663f507962f31669dffbe7f4484572f 347 Gene3D G3DSA:1.10.260.40 10 108 2.2E-25 T 31-10-2018 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 95 2.0E-13 T 31-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 Gene3D G3DSA:1.20.5.710 2 51 2.3E-24 T 31-10-2018 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 2.9E-29 T 31-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 Gene3D G3DSA:3.30.1390.10 52 122 1.5E-29 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 SUPERFAMILY SSF48300 4 58 2.22E-15 T 31-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 SUPERFAMILY SSF54736 51 122 2.62E-24 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 24.996 T 31-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.3E-45 T 31-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0751 3c65321985d4b2f3d82277a932b27a0a 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 2.5E-17 T 31-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 35 92 2.9E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 Pfam PF03466 LysR substrate binding domain 118 320 1.3E-35 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 SUPERFAMILY SSF46785 29 141 1.98E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.7E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 70 81 1.7E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 70 1.7E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 Gene3D G3DSA:1.10.10.10 28 115 2.0E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 SUPERFAMILY SSF53850 116 306 1.06E-33 T 31-10-2018 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 Gene3D G3DSA:3.40.190.10 121 305 1.1E-28 T 31-10-2018 Y89_3166 8fb451f443237e9a6fafbf1c56c05ee9 348 Gene3D G3DSA:3.40.190.10 194 296 1.1E-28 T 31-10-2018 Y89_6037 486103118493440534183f1cb8abc681 642 Gene3D G3DSA:3.40.1080.20 395 534 4.7E-35 T 31-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily Y89_6037 486103118493440534183f1cb8abc681 642 Gene3D G3DSA:3.30.750.70 227 282 4.8E-5 T 31-10-2018 Y89_6037 486103118493440534183f1cb8abc681 642 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 364 523 5.9E-45 T 31-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6037 486103118493440534183f1cb8abc681 642 SUPERFAMILY SSF100950 225 550 5.11E-46 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 59 82 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 85 105 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 121 147 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 150 173 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 208 234 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 17 45 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 PRINTS PR00169 Potassium channel signature 179 201 9.5E-30 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 SUPERFAMILY SSF81324 24 234 1.71E-51 T 31-10-2018 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 Gene3D G3DSA:1.10.287.70 24 237 3.0E-54 T 31-10-2018 Y89_3842 adb6c61c484b4b96164dff917f5b1edd 283 Pfam PF00520 Ion transport protein 26 235 1.2E-28 T 31-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 PRINTS PR00352 3Fe-4S ferredoxin signature 23 33 7.7E-6 T 31-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 PRINTS PR00352 3Fe-4S ferredoxin signature 54 66 7.7E-6 T 31-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 PRINTS PR00352 3Fe-4S ferredoxin signature 12 23 7.7E-6 T 31-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 Pfam PF13459 4Fe-4S single cluster domain 10 66 1.2E-13 T 31-10-2018 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 SUPERFAMILY SSF54862 10 68 4.47E-12 T 31-10-2018 Y89_2571 6b5b3f80d603f2ff3ff45c55d1ebf522 76 Gene3D G3DSA:3.30.70.20 5 70 6.9E-20 T 31-10-2018 Y89_5786 f88ba601992fc28e2685d2d4cd549fc5 194 Gene3D G3DSA:3.40.50.150 1 194 1.6E-47 T 31-10-2018 Y89_5786 f88ba601992fc28e2685d2d4cd549fc5 194 Pfam PF13649 Methyltransferase domain 32 124 6.5E-12 T 31-10-2018 Y89_5786 f88ba601992fc28e2685d2d4cd549fc5 194 SUPERFAMILY SSF53335 2 161 6.55E-25 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 101 2.2E-19 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 PIRSF PIRSF006769 1 370 4.7E-127 T 31-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 SUPERFAMILY SSF53927 5 146 1.04E-48 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 9 364 2.6E-115 T 31-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 Gene3D G3DSA:3.40.430.10 143 371 2.9E-67 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 SUPERFAMILY SSF53597 147 365 1.68E-55 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 Pfam PF01872 RibD C-terminal domain 149 363 4.7E-47 T 31-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 148 367 3.1E-53 T 31-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Y89_0968 4debf9710840279e1b0941362f3d9dc5 373 Gene3D G3DSA:3.40.140.10 1 142 3.4E-46 T 31-10-2018 Y89_3412 854526319f71ff7b7f3f4b6585357727 316 Gene3D G3DSA:2.60.120.1440 102 231 2.4E-15 T 31-10-2018 Y89_3412 854526319f71ff7b7f3f4b6585357727 316 Pfam PF04773 FecR protein 114 204 5.8E-20 T 31-10-2018 IPR006860 FecR protein Y89_3412 854526319f71ff7b7f3f4b6585357727 316 Pfam PF16220 Domain of unknown function (DUF4880) 15 57 7.1E-15 T 31-10-2018 IPR032623 FecR, N-terminal Y89_3412 854526319f71ff7b7f3f4b6585357727 316 PIRSF PIRSF018266 4 316 2.1E-93 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_1903 4f1180e30b23787421de80aa40fb972e 336 SMART SM00859 6 120 2.4E-22 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 118 1.0E-23 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 318 1.1E-32 T 31-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 Gene3D G3DSA:3.30.360.10 131 314 3.6E-115 T 31-10-2018 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 SUPERFAMILY SSF51735 5 154 6.27E-34 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1903 4f1180e30b23787421de80aa40fb972e 336 Gene3D G3DSA:3.40.50.720 7 331 3.6E-115 T 31-10-2018 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 SUPERFAMILY SSF55347 135 319 9.35E-47 T 31-10-2018 Y89_1903 4f1180e30b23787421de80aa40fb972e 336 PIRSF PIRSF000148 4 336 3.8E-86 T 31-10-2018 Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 Pfam PF00589 Phage integrase family 217 376 4.3E-22 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 Gene3D G3DSA:1.10.443.10 218 402 5.5E-20 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 SUPERFAMILY SSF56349 108 388 2.35E-58 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 Pfam PF13356 Arm DNA-binding domain 12 96 8.1E-15 T 31-10-2018 IPR025166 Integrase, DNA-binding domain Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 Gene3D G3DSA:3.30.160.390 10 97 2.6E-22 T 31-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Y89_0282 0303ed72ce49902cadaf31ca34ccdd79 411 Gene3D G3DSA:1.10.150.130 104 217 2.6E-22 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5668 ecd7c788ff079322708d86b957c4de56 603 SUPERFAMILY SSF90123 18 338 3.4E-71 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 Pfam PF00664 ABC transporter transmembrane region 31 306 1.6E-48 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 Gene3D G3DSA:1.20.1560.10 16 339 8.1E-75 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 Pfam PF00005 ABC transporter 373 523 1.5E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 Gene3D G3DSA:3.40.50.300 340 593 2.3E-94 T 31-10-2018 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 15 595 1.3E-256 T 31-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 Y89_5668 ecd7c788ff079322708d86b957c4de56 603 SMART SM00382 382 575 4.2E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5668 ecd7c788ff079322708d86b957c4de56 603 SUPERFAMILY SSF52540 346 591 1.33E-94 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3349 141eff3543af1e897148958ce8493b47 387 Pfam PF10442 FIST C domain 238 364 7.3E-12 T 31-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_3349 141eff3543af1e897148958ce8493b47 387 SMART SM01204 236 366 3.6E-29 T 31-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_3349 141eff3543af1e897148958ce8493b47 387 SMART SM00897 34 235 3.2E-61 T 31-10-2018 IPR013702 FIST domain, N-terminal Y89_3349 141eff3543af1e897148958ce8493b47 387 Pfam PF08495 FIST N domain 37 233 4.3E-34 T 31-10-2018 IPR013702 FIST domain, N-terminal Y89_3362 e2dce0f43b47d7b8aa5fcf1055496cc1 202 SUPERFAMILY SSF52218 1 199 5.53E-54 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_3362 e2dce0f43b47d7b8aa5fcf1055496cc1 202 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 199 30.989 T 31-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y89_3362 e2dce0f43b47d7b8aa5fcf1055496cc1 202 Gene3D G3DSA:3.40.50.360 1 201 6.6E-62 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_3362 e2dce0f43b47d7b8aa5fcf1055496cc1 202 Pfam PF02525 Flavodoxin-like fold 1 196 4.9E-47 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_1711 7d85a431fb92a94ee1f5e3b18097afbf 316 Pfam PF12146 Serine aminopeptidase, S33 27 288 1.3E-68 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_1711 7d85a431fb92a94ee1f5e3b18097afbf 316 PIRSF PIRSF037442 1 307 1.1E-41 T 31-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y89_1711 7d85a431fb92a94ee1f5e3b18097afbf 316 Gene3D G3DSA:3.40.50.1820 3 310 4.3E-59 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1711 7d85a431fb92a94ee1f5e3b18097afbf 316 SUPERFAMILY SSF53474 6 305 5.45E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0413 8814db5ee871b2d65f6771effcfa1707 655 Pfam PF00350 Dynamin family 59 273 2.3E-12 T 31-10-2018 IPR022812 Dynamin superfamily Y89_0413 8814db5ee871b2d65f6771effcfa1707 655 SUPERFAMILY SSF52540 44 318 2.27E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5247 293c81901f44f7c1ff916f0f708e5f34 386 Pfam PF01553 Acyltransferase 90 210 2.8E-8 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_5247 293c81901f44f7c1ff916f0f708e5f34 386 SUPERFAMILY SSF69593 89 239 3.92E-6 T 31-10-2018 Y89_3404 5c614ca3a46f2d1d4bfba0773a6d3707 466 SUPERFAMILY SSF51905 34 413 2.2E-40 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3404 5c614ca3a46f2d1d4bfba0773a6d3707 466 Gene3D G3DSA:3.30.9.10 129 358 3.6E-66 T 31-10-2018 Y89_3404 5c614ca3a46f2d1d4bfba0773a6d3707 466 Pfam PF01266 FAD dependent oxidoreductase 35 396 2.0E-53 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_3404 5c614ca3a46f2d1d4bfba0773a6d3707 466 Gene3D G3DSA:3.50.50.60 35 396 3.6E-66 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1358 526f1b9f5eb060e575df91b016ef7f44 140 Pfam PF02657 Fe-S metabolism associated domain 15 133 1.6E-38 T 31-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like Y89_1358 526f1b9f5eb060e575df91b016ef7f44 140 Gene3D G3DSA:3.90.1010.10 4 139 2.0E-41 T 31-10-2018 Y89_1358 526f1b9f5eb060e575df91b016ef7f44 140 SUPERFAMILY SSF82649 6 136 7.32E-43 T 31-10-2018 Y89_4308 adf31557f1f27c53482cfea7fd4e24d8 381 SUPERFAMILY SSF56601 7 374 6.47E-79 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_4308 adf31557f1f27c53482cfea7fd4e24d8 381 Gene3D G3DSA:3.40.710.30 4 381 1.9E-122 T 31-10-2018 Y89_4308 adf31557f1f27c53482cfea7fd4e24d8 381 Pfam PF00144 Beta-lactamase 18 373 4.6E-79 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_3051 1ab7b2cfccb0d0863a7ec17f8aac07df 552 Gene3D G3DSA:1.20.1730.10 49 548 1.2E-58 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_3051 1ab7b2cfccb0d0863a7ec17f8aac07df 552 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 177 202 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_3051 1ab7b2cfccb0d0863a7ec17f8aac07df 552 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 62 471 1.1E-58 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_3051 1ab7b2cfccb0d0863a7ec17f8aac07df 552 Pfam PF00474 Sodium:solute symporter family 62 471 6.9E-103 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 SUPERFAMILY SSF52172 7 185 4.27E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 4.4E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 Gene3D G3DSA:3.40.50.2300 2 130 1.5E-32 T 31-10-2018 Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 Gene3D G3DSA:1.10.10.10 131 230 2.5E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 SMART SM00448 6 116 7.6E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 SMART SM00862 151 227 2.8E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3698 3d333226196d2c830d68c5f0ea7fc3c1 230 Pfam PF00072 Response regulator receiver domain 8 116 1.4E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3857 397ff2f585ed806a30ed02e20e23b395 155 Pfam PF03918 Cytochrome C biogenesis protein 10 151 8.7E-57 T 31-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family Y89_3857 397ff2f585ed806a30ed02e20e23b395 155 Gene3D G3DSA:1.10.8.640 17 100 4.2E-38 T 31-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily Y89_4638 06b772558cb9b2de8a1446060c42e889 186 Pfam PF11198 Protein of unknown function (DUF2857) 8 182 2.7E-62 T 31-10-2018 IPR021364 Protein of unknown function DUF2857 Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 SUPERFAMILY SSF53448 405 662 1.79E-49 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 ProSitePatterns PS00587 Glycosyl hydrolases family 17 signature. 223 236 - T 31-10-2018 IPR000490 Glycoside hydrolase family 17 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.39 Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 Gene3D G3DSA:3.20.20.80 45 304 2.3E-15 T 31-10-2018 Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 Gene3D G3DSA:3.90.550.10 411 633 1.2E-56 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 Pfam PF13641 Glycosyltransferase like family 2 421 649 2.2E-31 T 31-10-2018 Y89_4190 ad65c7433026a7bae342cf8e79924f7d 869 SUPERFAMILY SSF51445 39 302 1.38E-54 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_4642 a7cb14c37b7f10039726583138639224 146 PIRSF PIRSF002070 1 146 1.1E-22 T 31-10-2018 Y89_4642 a7cb14c37b7f10039726583138639224 146 SUPERFAMILY SSF50249 3 139 9.94E-24 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4642 a7cb14c37b7f10039726583138639224 146 Pfam PF00436 Single-strand binding protein family 9 109 2.7E-11 T 31-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y89_4642 a7cb14c37b7f10039726583138639224 146 Gene3D G3DSA:2.40.50.140 5 145 2.2E-20 T 31-10-2018 Y89_4668 5ff3d669d6a1edb7f1efafcbcad416d0 136 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 14 129 2.6E-42 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_4668 5ff3d669d6a1edb7f1efafcbcad416d0 136 Pfam PF11990 Protein of unknown function (DUF3487) 12 130 1.2E-41 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_1128 bb290e286af74211249a93f90ff6c939 317 Pfam PF03466 LysR substrate binding domain 88 295 3.2E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1128 bb290e286af74211249a93f90ff6c939 317 SUPERFAMILY SSF53850 90 298 2.53E-38 T 31-10-2018 Y89_1128 bb290e286af74211249a93f90ff6c939 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.0E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1128 bb290e286af74211249a93f90ff6c939 317 Gene3D G3DSA:3.40.190.290 91 294 6.7E-56 T 31-10-2018 Y89_1128 bb290e286af74211249a93f90ff6c939 317 SUPERFAMILY SSF46785 4 86 6.7E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1128 bb290e286af74211249a93f90ff6c939 317 Gene3D G3DSA:1.10.10.10 3 89 6.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 Gene3D G3DSA:3.30.420.40 258 504 1.2E-94 T 31-10-2018 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 Hamap MF_00186 Glycerol kinase [glpK]. 7 501 59.451 T 31-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 Gene3D G3DSA:3.30.420.40 5 257 2.8E-113 T 31-10-2018 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 8 500 1.4E-227 T 31-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 256 1.4E-87 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 265 455 5.8E-62 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 PIRSF PIRSF000538 7 504 7.3E-180 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 SUPERFAMILY SSF53067 258 500 1.51E-85 T 31-10-2018 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 SUPERFAMILY SSF53067 8 259 2.46E-96 T 31-10-2018 Y89_1444 3399c410cd2e669d9f592fb75cee140a 505 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 139 151 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 218 2.5E-21 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:1.10.540.10 3 116 1.0E-28 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 PIRSF PIRSF016578 235 383 8.8E-7 T 31-10-2018 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 PIRSF PIRSF016578 2 194 1.9E-7 T 31-10-2018 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 115 4.4E-25 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 338 357 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 SUPERFAMILY SSF56645 5 230 1.02E-60 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 SUPERFAMILY SSF47203 229 384 1.43E-43 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:2.40.110.10 120 235 2.4E-33 T 31-10-2018 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Gene3D G3DSA:1.20.140.10 236 380 3.6E-36 T 31-10-2018 Y89_4480 b4289aae0b5893b21dbcc11af9fc9f91 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 364 8.3E-34 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 SUPERFAMILY SSF103388 26 293 3.66E-99 T 31-10-2018 IPR036139 Virulence-associated V antigen superfamily GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 108 128 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 250 269 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 30 55 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 206 226 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 87 105 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 156 179 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 131 153 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 228 249 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 PRINTS PR01592 Low calcium response V antigen signature 269 291 1.9E-69 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_3627 ac721277f7fd1424af456c8220cb5d3f 294 Pfam PF04792 V antigen (LcrV) protein 74 294 3.5E-68 T 31-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 Y89_6172 351be57844a7201dfde571ae83426905 224 Pfam PF13302 Acetyltransferase (GNAT) domain 46 165 1.8E-11 T 31-10-2018 IPR000182 GNAT domain Y89_6172 351be57844a7201dfde571ae83426905 224 Gene3D G3DSA:3.40.630.30 5 224 3.7E-65 T 31-10-2018 Y89_6172 351be57844a7201dfde571ae83426905 224 SUPERFAMILY SSF55729 15 189 3.74E-36 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0653 2e1fcd53e49088747aaa1ccf741ea3ab 189 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 4 189 18.694 T 31-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y89_0653 2e1fcd53e49088747aaa1ccf741ea3ab 189 Pfam PF02660 Glycerol-3-phosphate acyltransferase 8 181 3.8E-53 T 31-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y89_0653 2e1fcd53e49088747aaa1ccf741ea3ab 189 SMART SM01207 7 182 2.0E-81 T 31-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y89_0653 2e1fcd53e49088747aaa1ccf741ea3ab 189 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 3 187 4.5E-54 T 31-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Y89_5208 682e56cd29a54aeb5a218dcdb40801d3 187 Gene3D G3DSA:1.10.357.10 5 185 5.8E-28 T 31-10-2018 Y89_5208 682e56cd29a54aeb5a218dcdb40801d3 187 SUPERFAMILY SSF46689 23 79 2.84E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5208 682e56cd29a54aeb5a218dcdb40801d3 187 ProSitePatterns PS00356 LacI-type HTH domain signature. 26 44 - T 31-10-2018 Y89_5208 682e56cd29a54aeb5a218dcdb40801d3 187 SUPERFAMILY SSF48498 81 172 1.13E-12 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:3.90.79.10 225 350 1.2E-12 T 31-10-2018 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 277 5.8E-110 T 31-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 SMART SM00478 39 190 8.4E-50 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF14815 NUDIX domain 238 343 8.3E-22 T 31-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.8E-8 T 31-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 168 1.1E-20 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:1.10.1670.10 10 210 3.4E-86 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 Gene3D G3DSA:1.10.340.30 21 132 3.4E-86 T 31-10-2018 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 31-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 SUPERFAMILY SSF55811 220 345 5.19E-24 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5821 d58986750fab8bcb6aa49550ff3e1b6e 355 SUPERFAMILY SSF48150 4 224 9.11E-75 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Pfam PF00700 Bacterial flagellin C-terminal helical region 403 487 1.8E-26 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Gene3D G3DSA:2.30.220.10 194 287 5.0E-140 T 31-10-2018 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Gene3D G3DSA:2.170.280.10 178 395 5.0E-140 T 31-10-2018 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Gene3D G3DSA:1.20.1330.10 45 447 5.0E-140 T 31-10-2018 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 PRINTS PR00207 Flagellin signature 111 134 1.4E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 PRINTS PR00207 Flagellin signature 37 54 1.4E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 PRINTS PR00207 Flagellin signature 76 95 1.4E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 6.8E-41 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 SUPERFAMILY SSF64518 1 488 2.62E-105 T 31-10-2018 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Pfam PF07196 Flagellin hook IN motif 251 303 4.8E-9 T 31-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Y89_4262 6a6f7450867029b81ccf4592d49963c5 488 Gene3D G3DSA:1.20.58.1830 5 487 5.0E-140 T 31-10-2018 Y89_3817 25937f351e41142e7536ecd750354546 434 Gene3D G3DSA:3.20.20.140 72 389 6.1E-193 T 31-10-2018 Y89_3817 25937f351e41142e7536ecd750354546 434 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 28 427 2.4E-186 T 31-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 Y89_3817 25937f351e41142e7536ecd750354546 434 Pfam PF01979 Amidohydrolase family 69 430 8.9E-71 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_3817 25937f351e41142e7536ecd750354546 434 SUPERFAMILY SSF51338 29 88 1.94E-10 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_3817 25937f351e41142e7536ecd750354546 434 Gene3D G3DSA:2.30.40.10 9 425 6.1E-193 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_3817 25937f351e41142e7536ecd750354546 434 SUPERFAMILY SSF51556 71 374 4.0E-104 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 275 4.7E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF47384 161 196 2.16E-6 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 424 4.9E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 4.5E-22 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 4.5E-22 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 4.5E-22 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 4.5E-22 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 SMART SM00387 317 425 4.5E-34 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00571 CBS domain 76 134 2.3E-6 T 31-10-2018 IPR000644 CBS domain Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Pfam PF00571 CBS domain 11 57 1.1E-5 T 31-10-2018 IPR000644 CBS domain Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Gene3D G3DSA:3.10.580.10 8 136 7.5E-14 T 31-10-2018 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 Gene3D G3DSA:3.30.565.10 278 432 1.0E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF54631 11 136 2.85E-13 T 31-10-2018 Y89_2140 1e7417d12083afcd1152b03702f4ae1b 433 SUPERFAMILY SSF55874 268 424 7.33E-46 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 5 554 38.804 T 31-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Pfam PF03717 Penicillin-binding Protein dimerisation domain 53 201 1.0E-11 T 31-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Gene3D G3DSA:3.30.450.330 218 542 5.5E-104 T 31-10-2018 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Gene3D G3DSA:3.90.1310.30 45 217 1.3E-38 T 31-10-2018 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 SUPERFAMILY SSF56601 217 545 1.31E-87 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Gene3D G3DSA:3.40.710.10 278 458 5.5E-104 T 31-10-2018 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 Pfam PF00905 Penicillin binding protein transpeptidase domain 242 538 5.6E-81 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_2982 02bc9adbb8dcd005d60c73ad26be226f 565 SUPERFAMILY SSF56519 49 216 2.09E-37 T 31-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 Gene3D G3DSA:3.40.47.10 9 278 2.1E-138 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 PIRSF PIRSF000429 1 396 2.1E-112 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 Gene3D G3DSA:3.40.47.10 129 391 2.1E-138 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 Pfam PF02803 Thiolase, C-terminal domain 273 394 5.5E-41 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 393 3.2E-124 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 SUPERFAMILY SSF53901 7 272 1.56E-77 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 SUPERFAMILY SSF53901 274 394 1.69E-38 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 Pfam PF00108 Thiolase, N-terminal domain 7 263 2.4E-86 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_2637 d74765b90a0911e76f77287440c0c9b9 396 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 Y89_3759 ae37399929da3ab9fb51af236c78653c 113 PIRSF PIRSF021239 1 113 2.2E-54 T 31-10-2018 IPR007437 Protein of unknown function DUF486 Y89_3759 ae37399929da3ab9fb51af236c78653c 113 Pfam PF04342 Putative member of DMT superfamily (DUF486) 7 111 8.2E-47 T 31-10-2018 IPR007437 Protein of unknown function DUF486 Y89_4659 3a063235eceff1e1383b0215287972d1 245 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 45 242 1.7E-82 T 31-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 179 227 - T 31-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 15 96 7.0E-13 T 31-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 73 85 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 178 198 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 154 175 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 85 105 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 107 126 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 216 233 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 PRINTS PR01166 Cytochrome c oxidase subunit II signature 198 215 1.2E-39 T 31-10-2018 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 SUPERFAMILY SSF49503 108 249 9.37E-54 T 31-10-2018 IPR008972 Cupredoxin Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Gene3D G3DSA:2.60.40.420 107 244 3.0E-82 T 31-10-2018 IPR008972 Cupredoxin Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 SUPERFAMILY SSF46626 213 350 9.46E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Gene3D G3DSA:1.10.760.10 247 366 5.1E-28 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 SUPERFAMILY SSF81464 4 104 4.58E-25 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 113 232 7.1E-37 T 31-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Gene3D G3DSA:1.10.287.90 35 106 3.0E-82 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 24 243 3.8E-59 T 31-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0116 bceafe0fe40e80c4a775d5413969a4db 366 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 266 340 1.2E-10 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4969 301d59a6aca6860fae0e2438b38218e6 164 PIRSF PIRSF018472 2 164 7.6E-55 T 31-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type Y89_4969 301d59a6aca6860fae0e2438b38218e6 164 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 154 1.5E-36 T 31-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Y89_4969 301d59a6aca6860fae0e2438b38218e6 164 Pfam PF04093 rod shape-determining protein MreD 8 156 4.4E-40 T 31-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 112 122 - T 31-10-2018 IPR020549 Endoribonuclease YbeY, conserved site Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 Gene3D G3DSA:3.40.390.30 1 153 1.7E-51 T 31-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 146 23.492 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 SUPERFAMILY SSF55486 5 148 1.9E-46 T 31-10-2018 Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 37 143 5.4E-35 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y89_1040 fc7c53cb804c93ba4660b4303d73c0b9 160 Pfam PF02130 Uncharacterized protein family UPF0054 19 142 1.1E-35 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Y89_5588 5f39e9bdd5a1f9edefb9b752c50925e9 219 Pfam PF00857 Isochorismatase family 11 202 2.0E-21 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_5588 5f39e9bdd5a1f9edefb9b752c50925e9 219 SUPERFAMILY SSF52499 3 201 3.66E-30 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_5588 5f39e9bdd5a1f9edefb9b752c50925e9 219 Gene3D G3DSA:3.40.50.850 2 206 1.3E-35 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_6055 04623e759765edbad22d3e0d755cada7 526 Gene3D G3DSA:3.10.105.10 285 500 2.7E-150 T 31-10-2018 Y89_6055 04623e759765edbad22d3e0d755cada7 526 Gene3D G3DSA:3.90.76.10 47 203 2.7E-150 T 31-10-2018 Y89_6055 04623e759765edbad22d3e0d755cada7 526 SUPERFAMILY SSF53850 24 523 2.04E-135 T 31-10-2018 Y89_6055 04623e759765edbad22d3e0d755cada7 526 Gene3D G3DSA:3.40.190.10 204 513 2.7E-150 T 31-10-2018 Y89_6055 04623e759765edbad22d3e0d755cada7 526 PIRSF PIRSF002741 16 525 7.5E-101 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_6055 04623e759765edbad22d3e0d755cada7 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 442 3.6E-87 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_1359 79aeb1de7d3faf20c8b92a7350b3846f 401 Pfam PF00266 Aminotransferase class-V 24 389 4.3E-137 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_1359 79aeb1de7d3faf20c8b92a7350b3846f 401 Gene3D G3DSA:3.40.640.10 34 293 3.5E-139 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1359 79aeb1de7d3faf20c8b92a7350b3846f 401 SUPERFAMILY SSF53383 6 398 5.98E-109 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1359 79aeb1de7d3faf20c8b92a7350b3846f 401 Gene3D G3DSA:3.90.1150.10 8 391 3.5E-139 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1359 79aeb1de7d3faf20c8b92a7350b3846f 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 214 233 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y89_1169 eb781d86bd87af03d406fab5a3b3a697 233 Gene3D G3DSA:1.20.1050.10 89 227 1.5E-10 T 31-10-2018 Y89_1169 eb781d86bd87af03d406fab5a3b3a697 233 SUPERFAMILY SSF47616 158 229 6.55E-10 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_1169 eb781d86bd87af03d406fab5a3b3a697 233 SUPERFAMILY SSF52833 1 102 4.9E-13 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1169 eb781d86bd87af03d406fab5a3b3a697 233 Pfam PF17171 Glutathione S-transferase, C-terminal domain 164 226 1.9E-16 T 31-10-2018 IPR033468 Metaxin, glutathione S-transferase domain Y89_1169 eb781d86bd87af03d406fab5a3b3a697 233 Pfam PF17172 Glutathione S-transferase N-terminal domain 18 114 1.9E-26 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_2463 bc1d57d689e182b40d6b24fe96e6a9ba 156 Pfam PF00293 NUDIX domain 4 119 9.1E-17 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_2463 bc1d57d689e182b40d6b24fe96e6a9ba 156 Gene3D G3DSA:3.90.79.10 1 150 1.1E-40 T 31-10-2018 Y89_2463 bc1d57d689e182b40d6b24fe96e6a9ba 156 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_2463 bc1d57d689e182b40d6b24fe96e6a9ba 156 SUPERFAMILY SSF55811 4 143 3.25E-28 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_1204 701db74427bdb380b87fade9f68c21f3 112 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 27 104 5.7E-29 T 31-10-2018 IPR003849 Preprotein translocase YajC Y89_1204 701db74427bdb380b87fade9f68c21f3 112 Pfam PF02699 Preprotein translocase subunit 28 101 1.3E-28 T 31-10-2018 IPR003849 Preprotein translocase YajC Y89_1204 701db74427bdb380b87fade9f68c21f3 112 SMART SM01323 22 104 5.8E-42 T 31-10-2018 IPR003849 Preprotein translocase YajC Y89_1204 701db74427bdb380b87fade9f68c21f3 112 PRINTS PR01853 Bacterial YajC preprotein translocase signature 24 44 4.7E-12 T 31-10-2018 IPR003849 Preprotein translocase YajC Y89_1204 701db74427bdb380b87fade9f68c21f3 112 PRINTS PR01853 Bacterial YajC preprotein translocase signature 62 80 4.7E-12 T 31-10-2018 IPR003849 Preprotein translocase YajC Y89_5162 b5f74af4777f1d7a73950582e00eb5ca 115 Gene3D G3DSA:2.40.50.320 18 98 5.5E-40 T 31-10-2018 Y89_5162 b5f74af4777f1d7a73950582e00eb5ca 115 Pfam PF14481 Type 4 fimbrial biogenesis protein PilY2 1 115 1.3E-81 T 31-10-2018 IPR029497 Type 4 fimbrial biogenesis protein PilY2 Y89_0081 3d6a61c4751d178f3ef6c5614f3645bd 570 Pfam PF03781 Sulfatase-modifying factor enzyme 1 127 359 3.9E-30 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Y89_0081 3d6a61c4751d178f3ef6c5614f3645bd 570 Gene3D G3DSA:3.90.1580.10 108 361 4.0E-25 T 31-10-2018 Y89_0081 3d6a61c4751d178f3ef6c5614f3645bd 570 SUPERFAMILY SSF56436 127 360 2.59E-27 T 31-10-2018 IPR016187 C-type lectin fold Y89_3522 673766745906204531e41a331a0e5d19 536 SUPERFAMILY SSF52540 5 256 2.55E-69 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3522 673766745906204531e41a331a0e5d19 536 SUPERFAMILY SSF52540 275 523 1.78E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3522 673766745906204531e41a331a0e5d19 536 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3522 673766745906204531e41a331a0e5d19 536 Gene3D G3DSA:3.40.50.300 3 271 2.8E-87 T 31-10-2018 Y89_3522 673766745906204531e41a331a0e5d19 536 Gene3D G3DSA:3.40.50.300 272 536 1.1E-83 T 31-10-2018 Y89_3522 673766745906204531e41a331a0e5d19 536 Pfam PF00005 ABC transporter 26 184 2.7E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3522 673766745906204531e41a331a0e5d19 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 265 3.9E-5 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_3522 673766745906204531e41a331a0e5d19 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 503 528 3.6E-5 T 31-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Y89_3522 673766745906204531e41a331a0e5d19 536 Pfam PF00005 ABC transporter 302 452 2.3E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3522 673766745906204531e41a331a0e5d19 536 ProSitePatterns PS00211 ABC transporters family signature. 424 438 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3522 673766745906204531e41a331a0e5d19 536 SMART SM00382 310 501 2.9E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3522 673766745906204531e41a331a0e5d19 536 SMART SM00382 34 234 4.3E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3358 e0a65917c910a9719d96f836dd10c537 123 Gene3D G3DSA:3.30.429.10 1 123 4.4E-42 T 31-10-2018 IPR014347 Tautomerase/MIF superfamily Y89_3358 e0a65917c910a9719d96f836dd10c537 123 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 117 7.4E-6 T 31-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 Y89_3358 e0a65917c910a9719d96f836dd10c537 123 SUPERFAMILY SSF55331 2 122 5.68E-31 T 31-10-2018 IPR014347 Tautomerase/MIF superfamily Y89_2078 321f64477699ee02a5c395a89bab489c 364 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 27 364 7.9E-130 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_2078 321f64477699ee02a5c395a89bab489c 364 SUPERFAMILY SSF51569 28 361 3.87E-118 T 31-10-2018 Y89_2078 321f64477699ee02a5c395a89bab489c 364 Gene3D G3DSA:3.20.20.70 24 364 5.6E-137 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2078 321f64477699ee02a5c395a89bab489c 364 PIRSF PIRSF001361 14 364 3.6E-145 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Y89_2078 321f64477699ee02a5c395a89bab489c 364 Pfam PF00793 DAHP synthetase I family 60 353 9.3E-79 T 31-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Y89_2593 e28612c7b2f12cfcaa629358c3df6d48 435 SUPERFAMILY SSF51556 9 377 2.33E-77 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_2593 e28612c7b2f12cfcaa629358c3df6d48 435 Pfam PF04909 Amidohydrolase 77 369 1.7E-27 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_2593 e28612c7b2f12cfcaa629358c3df6d48 435 Gene3D G3DSA:3.20.20.140 4 371 1.9E-85 T 31-10-2018 Y89_5053 a33bb88aa6efbdb2429965258cd4fdbf 288 Pfam PF13614 AAA domain 4 158 4.2E-25 T 31-10-2018 IPR025669 AAA domain Y89_5053 a33bb88aa6efbdb2429965258cd4fdbf 288 SUPERFAMILY SSF52540 8 266 4.9E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5053 a33bb88aa6efbdb2429965258cd4fdbf 288 Gene3D G3DSA:3.40.50.300 2 269 3.8E-47 T 31-10-2018 Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 67 3.5E-7 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 Gene3D G3DSA:3.10.20.30 1 82 2.6E-29 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 SUPERFAMILY SSF54292 9 96 5.11E-25 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 Pfam PF01799 [2Fe-2S] binding domain 81 153 3.7E-31 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 SUPERFAMILY SSF47741 92 163 2.22E-30 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_3390 7070b8ee040c44145bee6eb812615a6b 170 Gene3D G3DSA:1.10.150.120 83 167 1.3E-32 T 31-10-2018 Y89_4975 0da6c5b4d587d9f086c586b2db23514e 125 SUPERFAMILY SSF50685 30 122 1.12E-13 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_4975 0da6c5b4d587d9f086c586b2db23514e 125 Gene3D G3DSA:2.40.40.10 31 125 4.7E-40 T 31-10-2018 IPR036908 RlpA-like domain superfamily Y89_4975 0da6c5b4d587d9f086c586b2db23514e 125 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 5 124 23.671 T 31-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Y89_4975 0da6c5b4d587d9f086c586b2db23514e 125 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 34 124 1.2E-42 T 31-10-2018 IPR012997 Rare lipoprotein A Y89_4975 0da6c5b4d587d9f086c586b2db23514e 125 Pfam PF03330 Lytic transglycolase 33 121 1.1E-28 T 31-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Y89_3635 2b04936df0ed22b9aada18c603d24638 288 SUPERFAMILY SSF140591 68 263 9.42E-55 T 31-10-2018 Y89_3635 2b04936df0ed22b9aada18c603d24638 288 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 30 276 8.1E-75 T 31-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 Y89_3635 2b04936df0ed22b9aada18c603d24638 288 Pfam PF07201 HrpJ-like domain 54 217 2.9E-38 T 31-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 Y89_0032 d4041de21b3caa53617fc516e60f867b 328 Gene3D G3DSA:1.10.575.10 144 317 2.2E-9 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 Y89_0032 d4041de21b3caa53617fc516e60f867b 328 SUPERFAMILY SSF48537 133 320 7.06E-34 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PIRSF PIRSF019574 1 363 3.8E-131 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 29 45 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 175 194 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 101 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 262 281 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 307 333 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 152 166 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 212 231 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 66 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 86 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 8.5E-65 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 Gene3D G3DSA:3.40.190.10 130 357 5.5E-129 T 31-10-2018 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 Gene3D G3DSA:3.40.190.10 26 331 5.5E-129 T 31-10-2018 Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 Pfam PF13416 Bacterial extracellular solute-binding protein 39 328 4.9E-33 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_2376 034fd32b5c2bb9cb392af8f6e5817e5e 363 SUPERFAMILY SSF53850 26 362 3.67E-97 T 31-10-2018 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 109 18.671 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 24 109 8.9E-32 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 19 108 8.9E-27 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 73 89 8.2E-20 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 94 107 8.2E-20 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_4254 375055ea9080dde4b51e8f1662876d14 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 38 54 8.2E-20 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Y89_0866 c16d994ad8a340101ef43be597e33461 694 Gene3D G3DSA:2.40.170.20 48 694 4.7E-115 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0866 c16d994ad8a340101ef43be597e33461 694 SUPERFAMILY SSF56935 35 694 9.46E-107 T 31-10-2018 Y89_0866 c16d994ad8a340101ef43be597e33461 694 Pfam PF00593 TonB dependent receptor 263 690 7.8E-44 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0866 c16d994ad8a340101ef43be597e33461 694 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 171 1.3E-11 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0025 847a93a0606dca68a677e2810f62c284 168 PIRSF PIRSF004749 1 168 6.2E-60 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 Pfam PF01327 Polypeptide deformylase 4 153 6.0E-53 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 SUPERFAMILY SSF56420 2 165 2.09E-64 T 31-10-2018 IPR036821 Peptide deformylase superfamily Y89_0025 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 90 101 4.7E-39 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 102 120 4.7E-39 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 121 150 4.7E-39 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 PRINTS PR01576 Peptide deformylase signature 33 62 4.7E-39 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 Gene3D G3DSA:3.90.45.10 1 168 1.4E-72 T 31-10-2018 IPR036821 Peptide deformylase superfamily Y89_0025 847a93a0606dca68a677e2810f62c284 168 Hamap MF_00163 Peptide deformylase [def]. 2 163 32.206 T 31-10-2018 IPR023635 Peptide deformylase Y89_0025 847a93a0606dca68a677e2810f62c284 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 3.7E-56 T 31-10-2018 IPR023635 Peptide deformylase Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 SUPERFAMILY SSF48264 25 424 1.7E-66 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 Gene3D G3DSA:1.10.630.10 14 425 5.9E-70 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 375 398 8.6E-18 T 31-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 291 309 8.6E-18 T 31-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 332 356 8.6E-18 T 31-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 249 275 8.6E-18 T 31-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00463 E-class P450 group I signature 365 375 8.6E-18 T 31-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 292 303 9.4E-11 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 240 257 9.4E-11 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 375 386 9.4E-11 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 PRINTS PR00385 P450 superfamily signature 366 375 9.4E-11 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 368 377 - T 31-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Y89_1347 ef2b126c2f5b997002d19194a82b557a 425 Pfam PF00067 Cytochrome P450 228 398 7.8E-41 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_5241 c90efc71ad8967001397d2411333ef26 273 Pfam PF01435 Peptidase family M48 74 257 3.4E-40 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_3678 5f2a5fc3310b53da0c92a47937b5cbf8 518 Pfam PF06812 ImpA, N-terminal, type VI secretion system 17 127 8.5E-30 T 31-10-2018 IPR010657 ImpA, N-terminal Y89_3678 5f2a5fc3310b53da0c92a47937b5cbf8 518 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 12 484 2.0E-134 T 31-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 Y89_3678 5f2a5fc3310b53da0c92a47937b5cbf8 518 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 225 483 7.2E-77 T 31-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 Y89_1304 414b7e35785fa18cf36876ac625185d1 571 Gene3D G3DSA:3.10.310.30 323 451 2.6E-32 T 31-10-2018 Y89_1304 414b7e35785fa18cf36876ac625185d1 571 Pfam PF02272 DHHA1 domain 318 445 4.6E-29 T 31-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Y89_1304 414b7e35785fa18cf36876ac625185d1 571 SUPERFAMILY SSF64182 44 459 1.02E-118 T 31-10-2018 IPR038763 DHH phosphoesterase superfamily Y89_1304 414b7e35785fa18cf36876ac625185d1 571 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 20 566 3.0E-149 T 31-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Y89_1304 414b7e35785fa18cf36876ac625185d1 571 Pfam PF01368 DHH family 69 197 5.6E-8 T 31-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1304 414b7e35785fa18cf36876ac625185d1 571 Gene3D G3DSA:3.90.1640.30 44 322 2.3E-85 T 31-10-2018 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Gene3D G3DSA:3.40.605.10 18 473 5.9E-152 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 SUPERFAMILY SSF53720 15 483 3.67E-148 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Gene3D G3DSA:3.40.309.10 263 450 5.9E-152 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 Pfam PF00171 Aldehyde dehydrogenase family 18 475 7.2E-152 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_5568 31a1e51dcb2a25afdf900d7ccbb3ae29 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_1296 86ff0f5d0b4c71ee2e0aa62e1faa5056 399 Pfam PF02515 CoA-transferase family III 8 376 2.6E-121 T 31-10-2018 IPR003673 CoA-transferase family III GO:0003824 Y89_1296 86ff0f5d0b4c71ee2e0aa62e1faa5056 399 Gene3D G3DSA:3.40.50.10540 7 393 2.3E-127 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_1296 86ff0f5d0b4c71ee2e0aa62e1faa5056 399 Gene3D G3DSA:3.30.1540.10 235 327 2.3E-127 T 31-10-2018 Y89_1296 86ff0f5d0b4c71ee2e0aa62e1faa5056 399 SUPERFAMILY SSF89796 6 399 2.22E-135 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 97 2.2E-9 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 Gene3D G3DSA:3.40.50.720 130 273 4.4E-105 T 31-10-2018 Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 SUPERFAMILY SSF50129 11 150 7.15E-39 T 31-10-2018 IPR011032 GroES-like superfamily Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 335 3.7E-144 T 31-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 SUPERFAMILY SSF51735 121 298 1.85E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 SMART SM00829 20 334 2.8E-59 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 Pfam PF13602 Zinc-binding dehydrogenase 194 334 2.4E-25 T 31-10-2018 Y89_4215 b0a8be4d8ceeacac2ffa6a5ff45fbec2 338 Gene3D G3DSA:3.90.180.10 23 334 4.4E-105 T 31-10-2018 Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 SUPERFAMILY SSF52540 1 234 9.13E-75 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 Pfam PF00005 ABC transporter 18 165 7.8E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 PIRSF PIRSF039085 1 240 4.1E-103 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 Gene3D G3DSA:3.40.50.300 1 240 8.7E-72 T 31-10-2018 Y89_4095 fe851de032b31d8595d74e17d44d10d3 240 SMART SM00382 26 213 1.0E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 Gene3D G3DSA:1.10.10.10 1 77 7.3E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 SUPERFAMILY SSF53697 97 266 1.82E-16 T 31-10-2018 Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 Gene3D G3DSA:3.40.50.10490 95 278 5.5E-27 T 31-10-2018 Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 5 72 2.3E-11 T 31-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 SUPERFAMILY SSF46689 2 78 3.05E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6246 8b976a20ad6d55e82d40c9a6f0133de5 285 Pfam PF01380 SIS domain 135 253 1.5E-12 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_4581 7b408b8689f7890d28e63d93b7e9b178 250 Gene3D G3DSA:3.40.190.10 46 239 3.8E-6 T 31-10-2018 Y89_4581 7b408b8689f7890d28e63d93b7e9b178 250 Gene3D G3DSA:3.40.190.10 99 207 3.8E-6 T 31-10-2018 Y89_4581 7b408b8689f7890d28e63d93b7e9b178 250 SUPERFAMILY SSF53850 21 245 1.52E-19 T 31-10-2018 Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 97 23.277 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 104 1.4E-33 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 Gene3D G3DSA:3.30.1310.10 1 108 9.9E-45 T 31-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 PIRSF PIRSF004555 2 108 8.5E-38 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 SUPERFAMILY SSF82607 10 102 5.89E-36 T 31-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Y89_3805 6ba06b9950648442ad3eb38e5d453384 108 Pfam PF02575 YbaB/EbfC DNA-binding family 10 99 9.4E-35 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Y89_3327 0ea028f90a9dc52de1a84ab4bd094fa9 92 Gene3D G3DSA:3.10.50.40 3 91 1.1E-31 T 31-10-2018 Y89_3327 0ea028f90a9dc52de1a84ab4bd094fa9 92 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 31-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y89_3327 0ea028f90a9dc52de1a84ab4bd094fa9 92 SUPERFAMILY SSF54534 4 88 9.81E-27 T 31-10-2018 Y89_3327 0ea028f90a9dc52de1a84ab4bd094fa9 92 Pfam PF00639 PPIC-type PPIASE domain 12 88 3.2E-19 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 Gene3D G3DSA:1.10.439.10 34 181 8.2E-47 T 31-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 Gene3D G3DSA:1.10.1400.10 556 687 3.4E-154 T 31-10-2018 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 Gene3D G3DSA:3.60.20.10 254 778 3.4E-154 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 Gene3D G3DSA:2.30.120.10 326 403 3.4E-154 T 31-10-2018 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 PIRSF PIRSF001227 16 794 7.8E-171 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 Pfam PF01804 Penicillin amidase 50 783 1.4E-197 T 31-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 Y89_3431 55fa09217c214af01c40b7d3349cdce7 809 SUPERFAMILY SSF56235 44 790 1.77E-194 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 Gene3D G3DSA:3.40.50.620 1 179 6.1E-75 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 281 5.7E-98 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 Pfam PF02569 Pantoate-beta-alanine ligase 4 278 1.9E-100 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 Gene3D G3DSA:3.30.1300.10 180 282 3.7E-29 T 31-10-2018 Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 SUPERFAMILY SSF52374 3 280 7.82E-104 T 31-10-2018 Y89_2513 feee61d99f9d3c4a40c6902d598ae567 282 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.202 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Y89_1154 d8bfec742b88dc99323941db02980b16 227 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 3 224 2.9E-80 T 31-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 Y89_1154 d8bfec742b88dc99323941db02980b16 227 SUPERFAMILY SSF103501 4 224 6.28E-64 T 31-10-2018 IPR036197 NarG-like superfamily Y89_1154 d8bfec742b88dc99323941db02980b16 227 Pfam PF02665 Nitrate reductase gamma subunit 5 224 7.8E-77 T 31-10-2018 IPR023234 NarG-like domain Y89_1154 d8bfec742b88dc99323941db02980b16 227 Gene3D G3DSA:1.20.950.20 2 216 1.7E-74 T 31-10-2018 Y89_4477 86804af5d2717a64cdaea042132cba31 400 Pfam PF02515 CoA-transferase family III 10 376 2.9E-111 T 31-10-2018 IPR003673 CoA-transferase family III GO:0003824 Y89_4477 86804af5d2717a64cdaea042132cba31 400 Gene3D G3DSA:3.40.50.10540 9 394 5.3E-119 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_4477 86804af5d2717a64cdaea042132cba31 400 SUPERFAMILY SSF89796 8 400 2.09E-124 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_4477 86804af5d2717a64cdaea042132cba31 400 Gene3D G3DSA:3.30.1540.10 237 330 5.3E-119 T 31-10-2018 Y89_2973 35773d6670bf002245cf4146899f1d29 314 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 269 311 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2973 35773d6670bf002245cf4146899f1d29 314 Pfam PF12833 Helix-turn-helix domain 238 312 1.3E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2973 35773d6670bf002245cf4146899f1d29 314 SUPERFAMILY SSF46689 218 266 7.62E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2973 35773d6670bf002245cf4146899f1d29 314 Gene3D G3DSA:1.10.10.60 212 314 2.6E-23 T 31-10-2018 Y89_2973 35773d6670bf002245cf4146899f1d29 314 SMART SM00342 232 313 6.6E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2973 35773d6670bf002245cf4146899f1d29 314 SUPERFAMILY SSF46689 268 313 2.11E-8 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2215 7f2ed2c448cea2614d099e948d0bd69e 223 Gene3D G3DSA:3.10.620.30 1 153 2.0E-13 T 31-10-2018 Y89_2215 7f2ed2c448cea2614d099e948d0bd69e 223 Pfam PF01841 Transglutaminase-like superfamily 21 136 9.1E-16 T 31-10-2018 IPR002931 Transglutaminase-like Y89_2215 7f2ed2c448cea2614d099e948d0bd69e 223 SUPERFAMILY SSF54001 16 160 3.08E-21 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 194 272 5.5E-24 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 Gene3D G3DSA:3.30.1150.10 179 273 2.8E-25 T 31-10-2018 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 SUPERFAMILY SSF74653 190 270 1.83E-24 T 31-10-2018 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 PRINTS PR01374 Gram-negative bacterial tonB protein signature 131 141 1.1E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 PRINTS PR01374 Gram-negative bacterial tonB protein signature 190 211 1.1E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 PRINTS PR01374 Gram-negative bacterial tonB protein signature 211 229 1.1E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Y89_0210 a74a7ac990fb1f9f867498ac3b60a67c 273 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 196 273 1.2E-25 T 31-10-2018 IPR006260 TonB/TolA, C-terminal Y89_6069 43c52eadd3cb5144e8fb035d3e145056 213 Pfam PF00156 Phosphoribosyl transferase domain 44 159 6.6E-12 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_6069 43c52eadd3cb5144e8fb035d3e145056 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.028 T 31-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_6069 43c52eadd3cb5144e8fb035d3e145056 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 186 6.3E-62 T 31-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Y89_6069 43c52eadd3cb5144e8fb035d3e145056 213 SUPERFAMILY SSF53271 1 211 3.98E-50 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_6069 43c52eadd3cb5144e8fb035d3e145056 213 Gene3D G3DSA:3.40.50.2020 1 213 6.3E-78 T 31-10-2018 Y89_3882 83d5dbc190d12218af8c67335fa64e60 262 PIRSF PIRSF002884 26 262 3.5E-94 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Y89_3882 83d5dbc190d12218af8c67335fa64e60 262 SUPERFAMILY SSF75708 38 261 1.18E-61 T 31-10-2018 Y89_3882 83d5dbc190d12218af8c67335fa64e60 262 Gene3D G3DSA:1.10.287.500 70 203 1.4E-45 T 31-10-2018 Y89_3882 83d5dbc190d12218af8c67335fa64e60 262 Pfam PF04344 Chemotaxis phosphatase, CheZ 50 262 3.0E-75 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Y89_3668 c0d91a68c60b709d1a1f36bd2c7a122f 168 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 20 151 1.4E-41 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y89_3668 c0d91a68c60b709d1a1f36bd2c7a122f 168 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 154 2.8E-46 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y89_3668 c0d91a68c60b709d1a1f36bd2c7a122f 168 Gene3D G3DSA:2.60.40.4150 29 157 1.0E-39 T 31-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily Y89_4556 3112c8f764b737d214dc660674e6c46a 506 Pfam PF03929 PepSY-associated TM region 10 356 4.9E-59 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_3113 e9f377b74f1d80d941bef62383bee35d 684 Gene3D G3DSA:3.20.20.80 147 668 6.8E-120 T 31-10-2018 Y89_3113 e9f377b74f1d80d941bef62383bee35d 684 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 116 672 1.0E-84 T 31-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Y89_3113 e9f377b74f1d80d941bef62383bee35d 684 Pfam PF02446 4-alpha-glucanotransferase 156 652 9.0E-103 T 31-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Y89_3113 e9f377b74f1d80d941bef62383bee35d 684 SUPERFAMILY SSF51445 143 671 2.46E-129 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_1474 578fface42d1c6eb19ca207c8ccf718e 339 SUPERFAMILY SSF53448 8 255 1.39E-39 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1474 578fface42d1c6eb19ca207c8ccf718e 339 Pfam PF00535 Glycosyl transferase family 2 10 172 3.8E-32 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_1474 578fface42d1c6eb19ca207c8ccf718e 339 Gene3D G3DSA:3.90.550.10 5 234 3.3E-43 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1474 578fface42d1c6eb19ca207c8ccf718e 339 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 1 327 63.692 T 31-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.50.50.60 100 405 6.4E-50 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 50.179 T 31-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 Pfam PF01266 FAD dependent oxidoreductase 3 398 1.0E-70 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF51905 1 416 2.07E-54 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.30.9.10 134 362 6.4E-50 T 31-10-2018 Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 Gene3D G3DSA:3.50.50.60 1 80 8.0E-12 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6042 80ba7b1828922b7c1092a7f4435af112 432 SUPERFAMILY SSF54373 270 360 1.11E-17 T 31-10-2018 Y89_3046 7fbf3264524f728c1121671f3ef6ee8a 443 Gene3D G3DSA:1.20.1740.10 9 437 5.7E-64 T 31-10-2018 Y89_3046 7fbf3264524f728c1121671f3ef6ee8a 443 PIRSF PIRSF006060 1 434 2.8E-62 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3046 7fbf3264524f728c1121671f3ef6ee8a 443 Pfam PF00324 Amino acid permease 31 373 1.4E-41 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 Pfam PF08281 Sigma-70, region 4 111 163 3.9E-14 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 SUPERFAMILY SSF88946 10 100 5.89E-15 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 162 1.3E-19 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 Gene3D G3DSA:1.10.1740.10 1 77 5.5E-11 T 31-10-2018 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 Gene3D G3DSA:1.10.10.10 90 164 5.2E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 Pfam PF04542 Sigma-70 region 2 15 80 2.2E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_1124 1c9a484b4795e194b7546760c98ed97e 169 SUPERFAMILY SSF88659 105 164 1.26E-12 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_4223 d67e7642da4cc5f004f0a8775bddab07 135 SUPERFAMILY SSF54593 1 127 3.36E-33 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4223 d67e7642da4cc5f004f0a8775bddab07 135 Gene3D G3DSA:3.10.180.10 1 135 8.7E-44 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_4223 d67e7642da4cc5f004f0a8775bddab07 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 110 1.3E-13 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_5502 571e0428d021f2c6731edbb05e75cb0f 205 Pfam PF03006 Haemolysin-III related 2 197 5.1E-45 T 31-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 Y89_5502 571e0428d021f2c6731edbb05e75cb0f 205 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 204 1.7E-63 T 31-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 Y89_1604 7e058423833029e32c29524e5eb71fa4 451 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 20 437 2.8E-113 T 31-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 Y89_1604 7e058423833029e32c29524e5eb71fa4 451 Pfam PF02321 Outer membrane efflux protein 24 212 2.6E-19 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_1604 7e058423833029e32c29524e5eb71fa4 451 Pfam PF02321 Outer membrane efflux protein 239 423 3.0E-28 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_1604 7e058423833029e32c29524e5eb71fa4 451 Gene3D G3DSA:1.20.1600.10 23 441 2.7E-88 T 31-10-2018 Y89_1604 7e058423833029e32c29524e5eb71fa4 451 SUPERFAMILY SSF56954 22 437 4.97E-79 T 31-10-2018 Y89_6250 930468259fe229cf73fcb528a02af2a7 449 PIRSF PIRSF006060 1 449 1.6E-67 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_6250 930468259fe229cf73fcb528a02af2a7 449 Gene3D G3DSA:1.20.1740.10 10 445 4.7E-62 T 31-10-2018 Y89_6250 930468259fe229cf73fcb528a02af2a7 449 Pfam PF00324 Amino acid permease 32 407 3.5E-33 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 PRINTS PR01035 Tetracycline resistance protein signature 79 103 6.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 PRINTS PR01035 Tetracycline resistance protein signature 344 367 6.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 PRINTS PR01035 Tetracycline resistance protein signature 258 278 6.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 Pfam PF07690 Major Facilitator Superfamily 21 232 4.0E-22 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 SUPERFAMILY SSF103473 13 388 1.96E-47 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3416 e42b51baff857fe2ebdc6c77da5b6606 403 Gene3D G3DSA:1.20.1250.20 14 389 8.9E-45 T 31-10-2018 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 PIRSF PIRSF004669 1 89 2.2E-30 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 7.9E-17 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 7.9E-17 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 7.9E-17 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 3.5E-29 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3892 fc545aa330fc1afe2e79346775eb5e5e 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 2.9E-29 T 31-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Y89_4273 5ab6de3b0b0977f1d6802cc232c1c012 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.9E-31 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Y89_4273 5ab6de3b0b0977f1d6802cc232c1c012 249 Pfam PF00460 Flagella basal body rod protein 5 35 5.1E-6 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y89_4273 5ab6de3b0b0977f1d6802cc232c1c012 249 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 226 2.5E-53 T 31-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Y89_4273 5ab6de3b0b0977f1d6802cc232c1c012 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 239 4.3E-18 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y89_4273 5ab6de3b0b0977f1d6802cc232c1c012 249 SUPERFAMILY SSF117143 78 207 7.59E-16 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Y89_0544 23533777027161f3cdf0c251e1fe748f 146 Gene3D G3DSA:1.10.760.10 1 146 5.0E-45 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0544 23533777027161f3cdf0c251e1fe748f 146 SUPERFAMILY SSF46626 39 143 2.6E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0544 23533777027161f3cdf0c251e1fe748f 146 Pfam PF00034 Cytochrome c 50 131 2.0E-9 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0126 159dc8893e0e19c3834d83319bea9956 150 Gene3D G3DSA:3.40.630.30 1 150 6.6E-47 T 31-10-2018 Y89_0126 159dc8893e0e19c3834d83319bea9956 150 SUPERFAMILY SSF55729 3 149 1.89E-32 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0126 159dc8893e0e19c3834d83319bea9956 150 Pfam PF13673 Acetyltransferase (GNAT) domain 46 149 3.2E-15 T 31-10-2018 IPR000182 GNAT domain Y89_0091 2c15a7ae9d5430ee2c8dbf844b391861 505 SMART SM00240 27 78 6.5E-5 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Y89_0091 2c15a7ae9d5430ee2c8dbf844b391861 505 SUPERFAMILY SSF49879 13 107 1.11E-21 T 31-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Y89_0091 2c15a7ae9d5430ee2c8dbf844b391861 505 Pfam PF00498 FHA domain 29 97 5.4E-15 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Y89_0091 2c15a7ae9d5430ee2c8dbf844b391861 505 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 3 499 4.9E-167 T 31-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein Y89_0091 2c15a7ae9d5430ee2c8dbf844b391861 505 Gene3D G3DSA:2.60.200.20 5 109 2.4E-20 T 31-10-2018 Y89_4244 02c919327c40d8f87863905698de5317 236 SUPERFAMILY SSF55120 65 235 1.13E-20 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Y89_4244 02c919327c40d8f87863905698de5317 236 SMART SM00363 5 65 3.4E-5 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_4244 02c919327c40d8f87863905698de5317 236 SUPERFAMILY SSF55174 5 49 1.44E-10 T 31-10-2018 Y89_4244 02c919327c40d8f87863905698de5317 236 Gene3D G3DSA:3.10.290.10 3 59 2.0E-13 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Y89_4244 02c919327c40d8f87863905698de5317 236 Gene3D G3DSA:3.30.2350.10 62 235 6.9E-24 T 31-10-2018 Y89_4244 02c919327c40d8f87863905698de5317 236 Pfam PF01479 S4 domain 6 45 1.0E-6 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_4275 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF03963 Flagellar hook capping protein - N-terminal region 24 89 7.7E-25 T 31-10-2018 IPR005648 Flagellar hook capping protein Y89_4275 e190db32bf9778a9dfa861120c4b6437 237 Gene3D G3DSA:2.60.40.4070 114 200 3.5E-45 T 31-10-2018 Y89_4275 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF13860 FlgD Ig-like domain 119 189 3.9E-22 T 31-10-2018 IPR025965 FlgD Ig-like domain Y89_4275 e190db32bf9778a9dfa861120c4b6437 237 Pfam PF13861 FlgD Tudor-like domain 97 233 1.3E-17 T 31-10-2018 IPR025963 FlgD Tudor-like domain Y89_4275 e190db32bf9778a9dfa861120c4b6437 237 Gene3D G3DSA:2.30.30.910 102 232 3.5E-45 T 31-10-2018 Y89_2751 610d1341910a7eec476a540ef580881d 307 Gene3D G3DSA:1.10.10.10 2 91 3.3E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2751 610d1341910a7eec476a540ef580881d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.0E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2751 610d1341910a7eec476a540ef580881d 307 SUPERFAMILY SSF53850 89 301 3.98E-45 T 31-10-2018 Y89_2751 610d1341910a7eec476a540ef580881d 307 Gene3D G3DSA:3.40.190.290 92 297 6.2E-55 T 31-10-2018 Y89_2751 610d1341910a7eec476a540ef580881d 307 Pfam PF03466 LysR substrate binding domain 88 298 2.7E-46 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2751 610d1341910a7eec476a540ef580881d 307 SUPERFAMILY SSF46785 3 110 9.08E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4435 4a158694b2dc669429b5d5dcbd87c2c5 653 SUPERFAMILY SSF53649 251 580 8.24E-56 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_4435 4a158694b2dc669429b5d5dcbd87c2c5 653 PIRSF PIRSF004950 1 625 8.3E-207 T 31-10-2018 IPR012159 Inner membrane protein YejM Y89_4435 4a158694b2dc669429b5d5dcbd87c2c5 653 Gene3D G3DSA:3.40.720.10 246 540 2.0E-50 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_4435 4a158694b2dc669429b5d5dcbd87c2c5 653 Pfam PF11893 Domain of unknown function (DUF3413) 76 247 1.3E-18 T 31-10-2018 IPR024588 Inner membrane protein YejM, N-terminal Y89_4435 4a158694b2dc669429b5d5dcbd87c2c5 653 Pfam PF00884 Sulfatase 256 534 3.2E-29 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 Gene3D G3DSA:1.10.10.10 4 89 5.5E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 Gene3D G3DSA:3.40.190.290 91 292 1.6E-47 T 31-10-2018 Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 Pfam PF03466 LysR substrate binding domain 89 292 9.8E-36 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.8E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 SUPERFAMILY SSF46785 4 111 8.65E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5993 a12cb17a902ed109de8f9ccc9ebe246f 304 SUPERFAMILY SSF53850 89 294 3.26E-39 T 31-10-2018 Y89_1528 835e244ff7b342e9283f35b04b076c29 426 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 135 2.2E-27 T 31-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_1528 835e244ff7b342e9283f35b04b076c29 426 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 231 397 1.2E-4 T 31-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 Y89_1528 835e244ff7b342e9283f35b04b076c29 426 SUPERFAMILY SSF53756 1 415 2.45E-83 T 31-10-2018 Y89_1528 835e244ff7b342e9283f35b04b076c29 426 Gene3D G3DSA:3.40.50.2000 4 228 4.3E-88 T 31-10-2018 Y89_1528 835e244ff7b342e9283f35b04b076c29 426 Gene3D G3DSA:3.40.50.2000 229 389 4.3E-88 T 31-10-2018 Y89_1201 5fbac275bf6a6d6faac37ece458a5510 526 SUPERFAMILY SSF141868 263 507 9.81E-78 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1201 5fbac275bf6a6d6faac37ece458a5510 526 Pfam PF12792 CSS motif domain associated with EAL 42 232 1.2E-41 T 31-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Y89_1201 5fbac275bf6a6d6faac37ece458a5510 526 Pfam PF00563 EAL domain 263 498 6.1E-68 T 31-10-2018 IPR001633 EAL domain Y89_1201 5fbac275bf6a6d6faac37ece458a5510 526 Gene3D G3DSA:3.20.20.450 256 517 6.4E-87 T 31-10-2018 IPR035919 EAL domain superfamily Y89_1201 5fbac275bf6a6d6faac37ece458a5510 526 SMART SM00052 257 503 4.7E-98 T 31-10-2018 IPR001633 EAL domain Y89_2531 3fa91d5219068fdb865ef69c470afde1 416 Gene3D G3DSA:1.20.1250.20 2 405 1.6E-45 T 31-10-2018 Y89_2531 3fa91d5219068fdb865ef69c470afde1 416 Pfam PF07690 Major Facilitator Superfamily 30 308 1.3E-28 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2531 3fa91d5219068fdb865ef69c470afde1 416 SUPERFAMILY SSF103473 7 403 1.19E-53 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0533 22bde135cfc76473fe5ba13c9dbf58f7 171 Gene3D G3DSA:3.30.70.3460 28 170 1.4E-37 T 31-10-2018 Y89_1931 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Gene3D G3DSA:3.40.50.10330 23 287 8.1E-96 T 31-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Y89_1931 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Hamap MF_00361 NAD kinase [nadK]. 5 287 34.006 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y89_1931 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Gene3D G3DSA:2.60.200.30 127 264 8.1E-96 T 31-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y89_1931 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 Pfam PF01513 ATP-NAD kinase 7 271 1.1E-68 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y89_1931 7b6218b90f5ea0790dbd8e5a2cb3f0e4 295 SUPERFAMILY SSF111331 6 289 9.94E-90 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Y89_4707 182609aea4308b306bf259527d0943ca 91 Pfam PF00403 Heavy-metal-associated domain 25 85 2.6E-16 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 31 47 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 62 76 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 2 20 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 20 31 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 76 90 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 PRINTS PR00946 Mercury scavenger protein signature 47 62 3.3E-59 T 31-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 SUPERFAMILY SSF55008 17 89 4.71E-22 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 ProSitePatterns PS01047 Heavy-metal-associated domain. 28 57 - T 31-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Y89_4707 182609aea4308b306bf259527d0943ca 91 Gene3D G3DSA:3.30.70.100 20 91 1.9E-23 T 31-10-2018 Y89_4707 182609aea4308b306bf259527d0943ca 91 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 91 2.8E-44 T 31-10-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 Y89_3556 79dd81a39835e5e35882fb93423e1313 165 Pfam PF04545 Sigma-70, region 4 108 157 7.2E-12 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Y89_3556 79dd81a39835e5e35882fb93423e1313 165 Gene3D G3DSA:1.10.1740.10 2 103 5.2E-30 T 31-10-2018 Y89_3556 79dd81a39835e5e35882fb93423e1313 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 158 9.2E-31 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3556 79dd81a39835e5e35882fb93423e1313 165 SUPERFAMILY SSF88659 99 160 1.25E-10 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3556 79dd81a39835e5e35882fb93423e1313 165 Gene3D G3DSA:1.10.10.10 104 162 1.5E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3556 79dd81a39835e5e35882fb93423e1313 165 SUPERFAMILY SSF88946 3 91 1.88E-26 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3556 79dd81a39835e5e35882fb93423e1313 165 Pfam PF04542 Sigma-70 region 2 8 75 1.4E-19 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Y89_4031 f7a0f7666fc6327d47dec39f4c091c38 209 Pfam PF00510 Cytochrome c oxidase subunit III 20 207 8.8E-17 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4031 f7a0f7666fc6327d47dec39f4c091c38 209 SUPERFAMILY SSF81452 18 207 5.49E-60 T 31-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4031 f7a0f7666fc6327d47dec39f4c091c38 209 Gene3D G3DSA:1.20.120.80 24 209 1.0E-59 T 31-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4031 f7a0f7666fc6327d47dec39f4c091c38 209 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 30 209 5.4E-86 T 31-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 Gene3D G3DSA:3.40.190.10 161 264 4.1E-63 T 31-10-2018 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 Gene3D G3DSA:3.40.190.10 94 284 4.1E-63 T 31-10-2018 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 Gene3D G3DSA:1.10.10.10 1 92 1.2E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 SUPERFAMILY SSF53850 86 285 2.64E-31 T 31-10-2018 Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 Pfam PF03466 LysR substrate binding domain 86 287 1.4E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2682 ddfb1a8ff96c2e25dfd63c0ee817b72e 290 SUPERFAMILY SSF46785 1 86 2.64E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 SUPERFAMILY SSF53383 6 385 8.95E-110 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 31-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 17 378 4.6E-150 T 31-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 Gene3D G3DSA:3.90.1150.10 39 376 5.0E-129 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 1 382 51.276 T 31-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 Pfam PF00155 Aminotransferase class I and II 39 378 2.3E-52 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_0522 b5614723eb34348090cdbaa4f72b36bf 401 Gene3D G3DSA:3.40.640.10 55 284 5.0E-129 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0427 a82536b134f190752217618ec5c8626b 144 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 8 143 24.793 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y89_0427 a82536b134f190752217618ec5c8626b 144 SMART SM00732 8 108 8.0E-40 T 31-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Y89_0427 a82536b134f190752217618ec5c8626b 144 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 11 139 2.6E-40 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y89_0427 a82536b134f190752217618ec5c8626b 144 Gene3D G3DSA:3.30.420.140 8 142 4.9E-41 T 31-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Y89_0427 a82536b134f190752217618ec5c8626b 144 Pfam PF03652 Holliday junction resolvase 10 140 1.4E-39 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Y89_0427 a82536b134f190752217618ec5c8626b 144 SUPERFAMILY SSF53098 9 141 1.82E-40 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_5559 4b1c49336f542caa28c1c038b9989699 209 SUPERFAMILY SSF46689 2 78 7.18E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5559 4b1c49336f542caa28c1c038b9989699 209 Gene3D G3DSA:1.10.357.10 54 209 2.8E-62 T 31-10-2018 Y89_5559 4b1c49336f542caa28c1c038b9989699 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.4E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5559 4b1c49336f542caa28c1c038b9989699 209 Gene3D G3DSA:1.10.10.60 1 53 4.4E-27 T 31-10-2018 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 Gene3D G3DSA:1.10.10.60 236 342 3.6E-23 T 31-10-2018 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 23 208 3.5E-52 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_1992 a995457d75522bbfe50900eee2985fe7 343 SMART SM00342 252 334 2.0E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 Pfam PF12833 Helix-turn-helix domain 258 336 1.4E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 SUPERFAMILY SSF46689 287 337 1.43E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 318 334 5.7E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_1992 a995457d75522bbfe50900eee2985fe7 343 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 318 5.7E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2176 686ec80c2d335815e4757bd5f2cef76a 77 Pfam PF06568 Domain of unknown function (DUF1127) 26 61 5.3E-12 T 31-10-2018 IPR009506 Protein of unknown function DUF1127 Y89_3170 0d14b07631474008b9eed73787ee6750 237 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 7 206 6.3E-60 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_3170 0d14b07631474008b9eed73787ee6750 237 Gene3D G3DSA:2.40.100.10 93 230 1.5E-49 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3170 0d14b07631474008b9eed73787ee6750 237 SUPERFAMILY SSF50891 95 223 1.48E-40 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_3170 0d14b07631474008b9eed73787ee6750 237 SUPERFAMILY SSF160467 7 97 1.03E-12 T 31-10-2018 Y89_3170 0d14b07631474008b9eed73787ee6750 237 Gene3D G3DSA:3.30.1360.40 7 83 7.0E-10 T 31-10-2018 Y89_3170 0d14b07631474008b9eed73787ee6750 237 SMART SM00796 6 207 5.4E-84 T 31-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Y89_0655 ad0f22af5f95b1442c7157571fda74f8 180 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 7 130 2.1E-22 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_0655 ad0f22af5f95b1442c7157571fda74f8 180 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 130 1.9E-23 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_0655 ad0f22af5f95b1442c7157571fda74f8 180 SUPERFAMILY SSF55083 5 152 4.05E-38 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_0655 ad0f22af5f95b1442c7157571fda74f8 180 Gene3D G3DSA:3.30.70.560 2 154 5.0E-31 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Y89_2704 f2f076ae8a786095cfb5f3860ffd5b59 803 Gene3D G3DSA:3.40.50.300 512 770 2.9E-15 T 31-10-2018 Y89_2704 f2f076ae8a786095cfb5f3860ffd5b59 803 Gene3D G3DSA:3.40.50.300 2 347 1.2E-22 T 31-10-2018 Y89_2704 f2f076ae8a786095cfb5f3860ffd5b59 803 SUPERFAMILY SSF52540 4 759 6.87E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2704 f2f076ae8a786095cfb5f3860ffd5b59 803 Pfam PF13476 AAA domain 6 214 1.7E-17 T 31-10-2018 IPR038729 Rad50/SbcC-type AAA domain Y89_5870 fe30c157ead0170567a83653e93f6ef7 71 Pfam PF02599 Global regulator protein family 4 67 1.7E-10 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Y89_5870 fe30c157ead0170567a83653e93f6ef7 71 SUPERFAMILY SSF117130 3 67 1.2E-8 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Y89_5870 fe30c157ead0170567a83653e93f6ef7 71 Gene3D G3DSA:3.30.70.1680 1 71 4.2E-34 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 1.2E-51 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 SUPERFAMILY SSF53850 29 366 9.32E-90 T 31-10-2018 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 Pfam PF13416 Bacterial extracellular solute-binding protein 45 319 1.8E-26 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 Gene3D G3DSA:3.40.190.10 31 333 1.4E-120 T 31-10-2018 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 Gene3D G3DSA:3.40.190.10 134 361 1.4E-120 T 31-10-2018 Y89_2496 8058aa8cd668ec5777dab32fb16018b6 367 PIRSF PIRSF019574 1 367 2.7E-117 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_1313 c26378261871623d3e0a365bd16fcdda 620 SUPERFAMILY SSF51905 67 441 8.3E-24 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1313 c26378261871623d3e0a365bd16fcdda 620 Gene3D G3DSA:3.50.50.60 74 166 1.8E-10 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1313 c26378261871623d3e0a365bd16fcdda 620 Pfam PF13450 NAD(P)-binding Rossmann-like domain 78 137 8.8E-13 T 31-10-2018 Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 71 8.1E-5 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 Pfam PF00107 Zinc-binding dehydrogenase 151 261 1.0E-13 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 Gene3D G3DSA:3.90.180.10 8 310 2.6E-57 T 31-10-2018 Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 SMART SM00829 10 317 2.4E-13 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 SUPERFAMILY SSF51735 113 286 2.07E-27 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 SUPERFAMILY SSF50129 1 134 2.89E-33 T 31-10-2018 IPR011032 GroES-like superfamily Y89_4497 a20cbd383a88887a0f7e526cb5700cae 319 Gene3D G3DSA:3.40.50.720 121 287 2.6E-57 T 31-10-2018 Y89_0849 4d74478fcc12d5af144e1fe3e56f5052 132 Gene3D G3DSA:3.30.1330.40 1 131 2.3E-39 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_0849 4d74478fcc12d5af144e1fe3e56f5052 132 SUPERFAMILY SSF55298 9 130 1.4E-35 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_0849 4d74478fcc12d5af144e1fe3e56f5052 132 Pfam PF01042 Endoribonuclease L-PSP 13 127 2.2E-25 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_1298 9a70588be9e3429d04ccc8819e70d533 231 Pfam PF04012 PspA/IM30 family 2 228 6.9E-66 T 31-10-2018 IPR007157 PspA/IM30 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Gene3D G3DSA:2.20.25.90 3 64 9.5E-13 T 31-10-2018 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Gene3D G3DSA:3.40.50.740 69 487 2.1E-84 T 31-10-2018 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Gene3D G3DSA:2.40.40.20 614 766 1.5E-20 T 31-10-2018 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 SMART SM00926 6 59 1.3E-12 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 425 442 - T 31-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 SUPERFAMILY SSF50692 628 762 3.39E-25 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 SUPERFAMILY SSF53706 7 494 7.33E-113 T 31-10-2018 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Pfam PF01568 Molydopterin dinucleotide binding domain 644 754 4.1E-17 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Pfam PF00384 Molybdopterin oxidoreductase 63 452 2.5E-35 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Gene3D G3DSA:3.40.228.10 138 331 2.1E-84 T 31-10-2018 Y89_2373 f3bf77d183a073c1206633f75f02ffae 769 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 58 3.5E-16 T 31-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 Gene3D G3DSA:3.40.50.10210 56 329 6.7E-128 T 31-10-2018 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 14 346 1.5E-133 T 31-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 SUPERFAMILY SSF52733 4 347 2.62E-119 T 31-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 Gene3D G3DSA:1.10.1610.10 24 346 6.7E-128 T 31-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 12 348 37.035 T 31-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Y89_4071 8f4c85034ad3feab0d6eff5411793c19 351 Pfam PF02277 Phosphoribosyltransferase 12 346 3.5E-130 T 31-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 Gene3D G3DSA:2.60.40.10 155 247 1.7E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 150 2.8E-41 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 239 1.5E-12 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 132 147 2.3E-27 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 106 123 2.3E-27 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 171 186 2.3E-27 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 78 99 2.3E-27 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 PRINTS PR00969 Pili chaperone signature 29 38 2.3E-27 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 SUPERFAMILY SSF49584 154 246 2.88E-13 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 SUPERFAMILY SSF49354 24 150 1.41E-39 T 31-10-2018 IPR008962 PapD-like superfamily Y89_3151 67014f6fa2154d5fe1d9a633a2d9926f 248 Gene3D G3DSA:2.60.40.10 30 151 1.1E-39 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_4423 adf37ad590ba42a26959446a70f92993 312 Gene3D G3DSA:2.60.120.330 49 235 2.1E-45 T 31-10-2018 IPR027443 Isopenicillin N synthase-like Y89_4423 adf37ad590ba42a26959446a70f92993 312 SUPERFAMILY SSF51197 105 227 3.02E-17 T 31-10-2018 Y89_4423 adf37ad590ba42a26959446a70f92993 312 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 75 228 5.2E-47 T 31-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 Y89_0467 bbb23a1c919cdd27d5ec49ba225a7775 407 Pfam PF02515 CoA-transferase family III 5 383 4.2E-133 T 31-10-2018 IPR003673 CoA-transferase family III GO:0003824 Y89_0467 bbb23a1c919cdd27d5ec49ba225a7775 407 Gene3D G3DSA:3.30.1540.10 243 334 5.0E-145 T 31-10-2018 Y89_0467 bbb23a1c919cdd27d5ec49ba225a7775 407 SUPERFAMILY SSF89796 3 407 6.28E-147 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_0467 bbb23a1c919cdd27d5ec49ba225a7775 407 Gene3D G3DSA:3.40.50.10540 5 401 5.0E-145 T 31-10-2018 IPR023606 CoA-transferase family III domain superfamily Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:3.40.190.10 103 285 3.8E-61 T 31-10-2018 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 SUPERFAMILY SSF46785 4 86 5.3E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:1.10.10.10 6 93 1.1E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.1E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 Pfam PF03466 LysR substrate binding domain 92 289 1.8E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 SUPERFAMILY SSF53850 85 289 7.6E-34 T 31-10-2018 Y89_0913 fdaf3bd3049fd3950fd8ed36189dd56b 296 Gene3D G3DSA:3.40.190.10 163 259 3.8E-61 T 31-10-2018 Y89_0572 c9bd31c2ae2f1895d8ae09f616857549 265 Pfam PF01261 Xylose isomerase-like TIM barrel 21 217 1.1E-35 T 31-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Y89_0572 c9bd31c2ae2f1895d8ae09f616857549 265 Gene3D G3DSA:3.20.20.150 1 262 1.5E-79 T 31-10-2018 Y89_0572 c9bd31c2ae2f1895d8ae09f616857549 265 PIRSF PIRSF006241 1 262 2.0E-95 T 31-10-2018 IPR026040 Hydroxypyruvate isomerase-like Y89_0572 c9bd31c2ae2f1895d8ae09f616857549 265 SUPERFAMILY SSF51658 1 258 7.46E-86 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily Y89_6115 86aad7dca18f127a73b10c502bbf68fd 279 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 5 271 3.2E-126 T 31-10-2018 IPR017784 ABC transporter, choline, permease protein Y89_6115 86aad7dca18f127a73b10c502bbf68fd 279 Gene3D G3DSA:1.10.3720.10 87 273 6.3E-34 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6115 86aad7dca18f127a73b10c502bbf68fd 279 SUPERFAMILY SSF161098 87 271 5.89E-39 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6115 86aad7dca18f127a73b10c502bbf68fd 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 267 9.9E-28 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3417 3b9a4621c011bda082841969ab18f52a 546 Gene3D G3DSA:3.40.50.1820 101 502 1.7E-67 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3417 3b9a4621c011bda082841969ab18f52a 546 SUPERFAMILY SSF53474 98 495 6.11E-12 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3417 3b9a4621c011bda082841969ab18f52a 546 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 104 240 5.9E-6 T 31-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 Gene3D G3DSA:1.10.10.60 5 63 1.5E-17 T 31-10-2018 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 Gene3D G3DSA:1.10.357.10 65 203 1.8E-43 T 31-10-2018 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 SUPERFAMILY SSF48498 81 204 3.48E-36 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 2.3E-14 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 Pfam PF08362 YcdC-like protein, C-terminal region 65 204 2.6E-54 T 31-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.4E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.4E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0459 890cb96d71ae0e8a56d370c432e62b13 206 SUPERFAMILY SSF46689 7 73 1.59E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5932 5f797f6bec9ce3208ddc48b846ea1901 196 Pfam PF09335 SNARE associated Golgi protein 23 139 3.6E-18 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 22 54 4.1E-5 T 31-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 SUPERFAMILY SSF55103 277 597 1.18E-159 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Gene3D G3DSA:1.10.45.10 548 596 1.4E-12 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Gene3D G3DSA:3.40.462.10 275 547 3.7E-128 T 31-10-2018 IPR016170 Cytokinin dehydrogenase, C-terminal domain superfamily KEGG: 00908+1.5.99.12 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 SUPERFAMILY SSF56176 62 271 4.16E-35 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Gene3D G3DSA:3.30.43.10 70 146 2.4E-29 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Pfam PF01565 FAD binding domain 92 211 1.1E-12 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Pfam PF09129 Cholesterol oxidase, substrate-binding 277 597 7.5E-159 T 31-10-2018 IPR015213 Cholesterol oxidase, substrate-binding Y89_0882 4e10e53615e8bdbc0be53c8c4c6cd0e1 597 Gene3D G3DSA:3.30.465.10 147 274 7.4E-54 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_3476 1af61299736590195a2c21de29ca8c8c 401 SMART SM00267 219 393 1.3E-50 T 31-10-2018 IPR000160 GGDEF domain Y89_3476 1af61299736590195a2c21de29ca8c8c 401 Pfam PF00990 Diguanylate cyclase, GGDEF domain 230 388 2.9E-41 T 31-10-2018 IPR000160 GGDEF domain Y89_3476 1af61299736590195a2c21de29ca8c8c 401 Gene3D G3DSA:3.30.70.270 222 391 6.8E-51 T 31-10-2018 Y89_3476 1af61299736590195a2c21de29ca8c8c 401 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 228 392 4.6E-44 T 31-10-2018 IPR000160 GGDEF domain Y89_3476 1af61299736590195a2c21de29ca8c8c 401 SUPERFAMILY SSF55073 235 392 5.1E-43 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0949 f681d43c249db37adf480d2b2f84e2a3 278 Gene3D G3DSA:3.40.50.150 48 201 2.0E-11 T 31-10-2018 Y89_0949 f681d43c249db37adf480d2b2f84e2a3 278 SUPERFAMILY SSF53335 47 234 2.31E-13 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0241 ddda8bc5e2fd850ca778f3d212c2bd91 277 SUPERFAMILY SSF111364 23 276 1.2E-51 T 31-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 Y89_4927 0ed0ee5e702838f652009009a6127f7e 364 SUPERFAMILY SSF52540 53 197 3.84E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4927 0ed0ee5e702838f652009009a6127f7e 364 Gene3D G3DSA:3.40.50.300 7 186 2.4E-19 T 31-10-2018 Y89_4927 0ed0ee5e702838f652009009a6127f7e 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 364 54.614 T 31-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 Y89_4927 0ed0ee5e702838f652009009a6127f7e 364 Pfam PF03969 AFG1-like ATPase 1 360 1.1E-169 T 31-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Y89_0970 a61b96969e0063705c657fb40f85d175 365 SUPERFAMILY SSF142695 204 363 5.1E-40 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0970 a61b96969e0063705c657fb40f85d175 365 PIRSF PIRSF001259 1 365 1.8E-116 T 31-10-2018 Y89_0970 a61b96969e0063705c657fb40f85d175 365 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 4.5E-75 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0970 a61b96969e0063705c657fb40f85d175 365 SUPERFAMILY SSF55821 2 202 5.72E-87 T 31-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Y89_0970 a61b96969e0063705c657fb40f85d175 365 Pfam PF00925 GTP cyclohydrolase II 208 363 7.7E-30 T 31-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0970 a61b96969e0063705c657fb40f85d175 365 Gene3D G3DSA:3.90.870.10 1 206 2.3E-90 T 31-10-2018 Y89_0970 a61b96969e0063705c657fb40f85d175 365 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 1.0E-84 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0970 a61b96969e0063705c657fb40f85d175 365 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.815 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_3401 35d5f16f870cb2b1120a20f6d1d7c689 675 SUPERFAMILY SSF51998 127 660 3.66E-153 T 31-10-2018 Y89_3401 35d5f16f870cb2b1120a20f6d1d7c689 675 Gene3D G3DSA:3.20.70.20 140 671 1.9E-103 T 31-10-2018 Y89_3401 35d5f16f870cb2b1120a20f6d1d7c689 675 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 126 659 1.4E-133 T 31-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Y89_3401 35d5f16f870cb2b1120a20f6d1d7c689 675 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 127 658 4.8E-168 T 31-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Y89_3401 35d5f16f870cb2b1120a20f6d1d7c689 675 Pfam PF03477 ATP cone domain 14 96 4.3E-20 T 31-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Y89_6337 7097d98269085f34f571849023f208a4 296 PIRSF PIRSF000398 1 270 1.5E-38 T 31-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Y89_6337 7097d98269085f34f571849023f208a4 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 176 188 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_6337 7097d98269085f34f571849023f208a4 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 11 27 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_6337 7097d98269085f34f571849023f208a4 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 32 46 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_6337 7097d98269085f34f571849023f208a4 296 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 52 65 1.3E-10 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_6337 7097d98269085f34f571849023f208a4 296 Gene3D G3DSA:1.10.1020.10 59 156 8.7E-32 T 31-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Y89_6337 7097d98269085f34f571849023f208a4 296 Gene3D G3DSA:3.40.50.150 8 240 8.7E-32 T 31-10-2018 Y89_6337 7097d98269085f34f571849023f208a4 296 SUPERFAMILY SSF53335 6 265 6.31E-47 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_6337 7097d98269085f34f571849023f208a4 296 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 11 225 2.0E-19 T 31-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Y89_6217 53a1f71169181c210ce9139daa41b5d9 429 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_6217 53a1f71169181c210ce9139daa41b5d9 429 Pfam PF07690 Major Facilitator Superfamily 16 370 7.5E-27 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_6217 53a1f71169181c210ce9139daa41b5d9 429 ProSitePatterns PS00216 Sugar transport proteins signature 1. 288 305 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_6217 53a1f71169181c210ce9139daa41b5d9 429 Gene3D G3DSA:1.20.1250.20 9 428 1.4E-60 T 31-10-2018 Y89_6217 53a1f71169181c210ce9139daa41b5d9 429 SUPERFAMILY SSF103473 8 420 1.83E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0646 709dc94329a0f2ca3236defedc378d36 561 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 115 328 3.7E-42 T 31-10-2018 IPR000477 Reverse transcriptase domain Y89_0646 709dc94329a0f2ca3236defedc378d36 561 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 65 409 4.5E-114 T 31-10-2018 IPR030931 Group II intron reverse transcriptase/maturase Y89_0646 709dc94329a0f2ca3236defedc378d36 561 SUPERFAMILY SSF56672 55 413 1.89E-51 T 31-10-2018 Y89_0646 709dc94329a0f2ca3236defedc378d36 561 Pfam PF08388 Group II intron, maturase-specific domain 345 422 1.6E-25 T 31-10-2018 IPR013597 Group II intron, maturase-specific Y89_0646 709dc94329a0f2ca3236defedc378d36 561 SMART SM00507 494 547 1.6E-8 T 31-10-2018 IPR003615 HNH nuclease Y89_0646 709dc94329a0f2ca3236defedc378d36 561 Pfam PF01844 HNH endonuclease 506 552 1.4E-10 T 31-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 Y89_0646 709dc94329a0f2ca3236defedc378d36 561 Pfam PF13655 N-terminal domain of reverse transcriptase 19 99 2.6E-31 T 31-10-2018 IPR025960 Reverse transcriptase, N-terminal domain Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 43 68 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 351 371 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 324 343 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 PRINTS PR00173 Glutamate-aspartate symporter signature 289 315 8.8E-18 T 31-10-2018 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 SUPERFAMILY SSF118215 17 399 1.2E-95 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 Pfam PF00375 Sodium:dicarboxylate symporter family 17 396 2.4E-62 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 Gene3D G3DSA:1.10.3860.10 8 405 1.6E-70 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_3281 78d0e2d385c3a3ee41464201ead5f44f 409 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 5 406 36.597 T 31-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 Y89_2002 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 119 141 4.6E-14 T 31-10-2018 IPR006015 Universal stress protein A Y89_2002 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 3 21 4.6E-14 T 31-10-2018 IPR006015 Universal stress protein A Y89_2002 9601a574169072103f80d7c4f1450863 145 PRINTS PR01438 Universal stress protein signature 102 114 4.6E-14 T 31-10-2018 IPR006015 Universal stress protein A Y89_2002 9601a574169072103f80d7c4f1450863 145 SUPERFAMILY SSF52402 3 141 1.93E-36 T 31-10-2018 Y89_2002 9601a574169072103f80d7c4f1450863 145 PIRSF PIRSF006276 1 144 1.3E-48 T 31-10-2018 IPR006015 Universal stress protein A Y89_2002 9601a574169072103f80d7c4f1450863 145 Pfam PF00582 Universal stress protein family 3 141 1.3E-33 T 31-10-2018 IPR006016 UspA Y89_2002 9601a574169072103f80d7c4f1450863 145 Gene3D G3DSA:3.40.50.620 3 144 8.2E-41 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_0565 de1d151a6a422825c4f52568d6f3e8a9 322 SUPERFAMILY SSF53474 46 296 1.03E-29 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0565 de1d151a6a422825c4f52568d6f3e8a9 322 Pfam PF10503 Esterase PHB depolymerase 55 181 1.1E-15 T 31-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 Y89_0565 de1d151a6a422825c4f52568d6f3e8a9 322 Gene3D G3DSA:3.40.50.1820 36 231 9.6E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0409 d6827c051ee84fd3a703129a7820fd81 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 5 197 48.73 T 31-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 Y89_0409 d6827c051ee84fd3a703129a7820fd81 197 Pfam PF01725 Ham1 family 7 193 5.0E-56 T 31-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Y89_0409 d6827c051ee84fd3a703129a7820fd81 197 Gene3D G3DSA:3.90.950.10 3 196 7.1E-72 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_0409 d6827c051ee84fd3a703129a7820fd81 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 7 195 5.8E-57 T 31-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Y89_0409 d6827c051ee84fd3a703129a7820fd81 197 SUPERFAMILY SSF52972 4 195 2.62E-68 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Y89_0335 0ed828df8e2dd68b41ea2741a1847bfd 145 Pfam PF14347 Domain of unknown function (DUF4399) 54 145 1.0E-39 T 31-10-2018 IPR025512 Domain of unknown function DUF4399 Y89_5077 86687318268c213d44a93e56cdc01eea 276 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 27 119 2.0E-30 T 31-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family Y89_5077 86687318268c213d44a93e56cdc01eea 276 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 31 116 4.7E-28 T 31-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family Y89_0216 5db8aefa9b41b29e87e02076cf9baa88 293 TIGRFAM TIGR03132 malonate_mdcB: triphosphoribosyl-dephospho-CoA synthase MdcB 18 282 8.6E-99 T 31-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Y89_0216 5db8aefa9b41b29e87e02076cf9baa88 293 Hamap MF_01883 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [mdcB]. 1 293 149.359 T 31-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Y89_0216 5db8aefa9b41b29e87e02076cf9baa88 293 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 20 280 3.2E-71 T 31-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Y89_2474 1ee4138acca8e6cadf4b340408743c65 208 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 11 208 30.367 T 31-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Y89_2474 1ee4138acca8e6cadf4b340408743c65 208 Gene3D G3DSA:2.50.20.10 24 208 4.2E-60 T 31-10-2018 Y89_2474 1ee4138acca8e6cadf4b340408743c65 208 SUPERFAMILY SSF89392 26 207 7.85E-53 T 31-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Y89_2474 1ee4138acca8e6cadf4b340408743c65 208 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 7 205 2.0E-32 T 31-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Y89_2474 1ee4138acca8e6cadf4b340408743c65 208 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 36 198 6.5E-57 T 31-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 296 319 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 Pfam PF00375 Sodium:dicarboxylate symporter family 10 402 1.4E-113 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 Gene3D G3DSA:1.10.3860.10 1 418 1.7E-124 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 3.2E-28 T 31-10-2018 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 SUPERFAMILY SSF118215 10 402 1.03E-122 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Y89_4170 78defffdc394122a42cf03abd1d28dbd 436 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 3 429 38.22 T 31-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 Y89_4277 abad5f29bd4483fbd55dbf5a6a5600e4 135 Pfam PF00460 Flagella basal body rod protein 11 39 8.3E-9 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y89_4277 abad5f29bd4483fbd55dbf5a6a5600e4 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 133 3.8E-46 T 31-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Y89_4277 abad5f29bd4483fbd55dbf5a6a5600e4 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Y89_4277 abad5f29bd4483fbd55dbf5a6a5600e4 135 PIRSF PIRSF002889 1 135 1.6E-46 T 31-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 2.9E-39 T 31-10-2018 Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 0.005 T 31-10-2018 Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 8.5E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 8.5E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 8.5E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 8.5E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 SUPERFAMILY SSF51735 4 255 1.08E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2104 c50b9cad337dbe771f0afd5ddbc39f26 257 Gene3D G3DSA:3.40.50.720 1 257 2.0E-66 T 31-10-2018 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 Gene3D G3DSA:1.10.10.60 220 327 1.6E-35 T 31-10-2018 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF52317 15 205 4.07E-48 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 Pfam PF01965 DJ-1/PfpI family 20 183 9.3E-18 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 Gene3D G3DSA:3.40.50.880 12 213 1.8E-58 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 277 319 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF46689 276 325 8.06E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 SUPERFAMILY SSF46689 224 274 2.15E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 Pfam PF12833 Helix-turn-helix domain 246 324 1.3E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6118 acd9a8eeb529fb490c74ac7580ba1bac 367 SMART SM00342 240 323 9.5E-29 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0561 b8488a3e0a217109d4c1ca882ef64e92 276 Pfam PF00892 EamA-like transporter family 144 274 5.3E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0561 b8488a3e0a217109d4c1ca882ef64e92 276 SUPERFAMILY SSF103481 182 275 2.22E-12 T 31-10-2018 Y89_0561 b8488a3e0a217109d4c1ca882ef64e92 276 SUPERFAMILY SSF103481 38 133 9.15E-13 T 31-10-2018 Y89_5596 79ae8461569b478e114bd2e362d1142f 311 Gene3D G3DSA:3.10.620.30 117 295 4.1E-47 T 31-10-2018 Y89_5596 79ae8461569b478e114bd2e362d1142f 311 SUPERFAMILY SSF54001 130 287 1.67E-45 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_5596 79ae8461569b478e114bd2e362d1142f 311 Pfam PF01841 Transglutaminase-like superfamily 160 260 2.0E-22 T 31-10-2018 IPR002931 Transglutaminase-like Y89_5596 79ae8461569b478e114bd2e362d1142f 311 SMART SM00460 192 262 2.9E-23 T 31-10-2018 IPR002931 Transglutaminase-like Y89_5596 79ae8461569b478e114bd2e362d1142f 311 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 16 95 1.8E-24 T 31-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 145.9 T 31-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 Pfam PF01636 Phosphotransferase enzyme family 28 254 1.6E-36 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 Gene3D G3DSA:3.30.200.20 1 101 9.4E-33 T 31-10-2018 Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 Gene3D G3DSA:3.90.1200.10 105 314 2.6E-64 T 31-10-2018 Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 SUPERFAMILY SSF56112 5 306 1.22E-67 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_6235 1fb12e6ecff2db24ed6bfbd2b4e33bf0 316 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 303 3.5E-85 T 31-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Y89_3649 0741572fa6019659aeabc23be20e9629 225 Gene3D G3DSA:3.40.50.1000 5 208 1.3E-73 T 31-10-2018 IPR023214 HAD superfamily Y89_3649 0741572fa6019659aeabc23be20e9629 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 192 205 8.0E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_3649 0741572fa6019659aeabc23be20e9629 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 8.0E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_3649 0741572fa6019659aeabc23be20e9629 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 165 185 8.0E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_3649 0741572fa6019659aeabc23be20e9629 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 115 128 8.0E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_3649 0741572fa6019659aeabc23be20e9629 225 Gene3D G3DSA:1.10.720.60 17 100 1.3E-73 T 31-10-2018 Y89_3649 0741572fa6019659aeabc23be20e9629 225 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 2 222 42.799 T 31-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 Y89_3649 0741572fa6019659aeabc23be20e9629 225 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 3 214 8.7E-80 T 31-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 Y89_3649 0741572fa6019659aeabc23be20e9629 225 SUPERFAMILY SSF56784 1 222 1.3E-60 T 31-10-2018 IPR036412 HAD-like superfamily Y89_2314 b648a178c34b3768830edbe786d4d852 275 Pfam PF06067 Domain of unknown function (DUF932) 36 264 9.1E-59 T 31-10-2018 IPR026325 Protein of unknown function DUF932 Y89_1413 0d3d15ea9030762a98b054350db31049 801 SUPERFAMILY SSF52518 422 620 3.83E-7 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_1413 0d3d15ea9030762a98b054350db31049 801 SUPERFAMILY SSF52518 81 387 1.14E-20 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_1413 0d3d15ea9030762a98b054350db31049 801 PIRSF PIRSF017245 26 801 2.4E-227 T 31-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Y89_1413 0d3d15ea9030762a98b054350db31049 801 Gene3D G3DSA:3.40.50.970 428 634 9.7E-41 T 31-10-2018 Y89_1413 0d3d15ea9030762a98b054350db31049 801 Gene3D G3DSA:3.40.50.970 53 400 3.5E-60 T 31-10-2018 Y89_1413 0d3d15ea9030762a98b054350db31049 801 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 434 604 2.6E-42 T 31-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Y89_1413 0d3d15ea9030762a98b054350db31049 801 Pfam PF09364 XFP N-terminal domain 66 307 3.6E-14 T 31-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Y89_1780 786c328242cb4e67af5967e4116c488f 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_1780 786c328242cb4e67af5967e4116c488f 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_1780 786c328242cb4e67af5967e4116c488f 551 Gene3D G3DSA:1.20.1730.10 51 548 6.2E-62 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_1780 786c328242cb4e67af5967e4116c488f 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 469 1.3E-61 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_1780 786c328242cb4e67af5967e4116c488f 551 Pfam PF00474 Sodium:solute symporter family 64 470 8.0E-129 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 Gene3D G3DSA:3.40.190.10 178 285 7.1E-16 T 31-10-2018 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 Gene3D G3DSA:3.40.190.10 110 290 7.1E-16 T 31-10-2018 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 SUPERFAMILY SSF46785 10 113 9.53E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 Gene3D G3DSA:1.10.10.10 17 105 2.5E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 8.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 8.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 8.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 SUPERFAMILY SSF53850 102 303 3.44E-16 T 31-10-2018 Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 Pfam PF03466 LysR substrate binding domain 102 313 7.0E-23 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3198 4f1db933bfc1bb3fd6828f6b248cc980 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 79 1.5E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4676 7278f9f46a16a74af99fe4c1adf21ba3 148 Pfam PF07511 Protein of unknown function (DUF1525) 35 145 4.1E-42 T 31-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 Y89_4676 7278f9f46a16a74af99fe4c1adf21ba3 148 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 35 144 9.1E-43 T 31-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 Gene3D G3DSA:3.30.420.10 2 196 5.3E-71 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 PIRSF PIRSF000977 1 477 1.4E-203 T 31-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 SUPERFAMILY SSF53098 7 453 2.68E-125 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 SMART SM00479 6 198 3.9E-4 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 Pfam PF08411 Exonuclease C-terminal 207 470 3.6E-97 T 31-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 Gene3D G3DSA:1.20.1280.70 354 414 2.2E-26 T 31-10-2018 Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 Gene3D G3DSA:2.30.30.450 209 348 4.1E-48 T 31-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily Y89_4801 fc6e8d2dbcddccc434fe66e61f9edd69 480 Pfam PF00929 Exonuclease 9 188 7.1E-25 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_2235 30e7ef5822fea2838d3ddbf7afeddf6f 438 SUPERFAMILY SSF50939 26 307 3.78E-24 T 31-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Y89_2235 30e7ef5822fea2838d3ddbf7afeddf6f 438 Gene3D G3DSA:2.60.40.10 335 438 2.9E-63 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_2235 30e7ef5822fea2838d3ddbf7afeddf6f 438 Pfam PF13088 BNR repeat-like domain 43 292 1.1E-8 T 31-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Y89_2235 30e7ef5822fea2838d3ddbf7afeddf6f 438 Gene3D G3DSA:2.120.10.10 13 327 1.7E-154 T 31-10-2018 Y89_3066 f9428857ef0037acf7b5e97da2a66733 416 Pfam PF03573 outer membrane porin, OprD family 29 414 1.8E-156 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_3066 f9428857ef0037acf7b5e97da2a66733 416 Gene3D G3DSA:2.40.160.10 34 416 9.4E-168 T 31-10-2018 IPR023614 Porin domain superfamily Y89_2927 8620921c04c85475c750090892490b9d 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 246 3.3E-21 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2927 8620921c04c85475c750090892490b9d 254 SUPERFAMILY SSF161098 56 239 1.7E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2927 8620921c04c85475c750090892490b9d 254 Gene3D G3DSA:1.10.3720.10 55 248 2.5E-24 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6362 183ae8674ea1cc86508cd6228ed09ab3 324 Pfam PF04754 Putative transposase, YhgA-like 4 202 3.6E-34 T 31-10-2018 IPR006842 Transposase (putative), YhgA-like Y89_6362 183ae8674ea1cc86508cd6228ed09ab3 324 Pfam PF14261 Domain of unknown function (DUF4351) 266 320 2.1E-8 T 31-10-2018 IPR025587 Domain of unknown function DUF4351 Y89_0534 e3501cda4a4d2bb7e4c6ef9802795d1c 147 Gene3D G3DSA:3.30.70.3460 65 144 7.9E-15 T 31-10-2018 Y89_0534 e3501cda4a4d2bb7e4c6ef9802795d1c 147 Gene3D G3DSA:1.10.10.10 1 53 1.1E-5 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 Gene3D G3DSA:1.25.40.10 21 161 7.7E-58 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 48 67 2.8E-48 T 31-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 23 46 2.8E-48 T 31-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 104 126 2.8E-48 T 31-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 72 94 2.8E-48 T 31-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 PIRSF PIRSF003165 1 162 1.9E-59 T 31-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 21 154 1.5E-43 T 31-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Y89_3626 bc45455fe8a054194fe19b91a651f7bf 168 SUPERFAMILY SSF48452 30 135 1.59E-13 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5552 9a06a2585f2cf55eacd5611c050c38bb 204 Gene3D G3DSA:1.20.950.20 1 183 2.2E-18 T 31-10-2018 Y89_5552 9a06a2585f2cf55eacd5611c050c38bb 204 SUPERFAMILY SSF81342 5 197 3.22E-33 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_5552 9a06a2585f2cf55eacd5611c050c38bb 204 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 159 181 3.4E-5 T 31-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Y89_5552 9a06a2585f2cf55eacd5611c050c38bb 204 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 8 31 3.4E-5 T 31-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Y89_5552 9a06a2585f2cf55eacd5611c050c38bb 204 Pfam PF01292 Prokaryotic cytochrome b561 6 190 6.6E-22 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_5678 7f48380f7e1ecba84f1f0f2aa4d7a779 492 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 322 449 3.8E-9 T 31-10-2018 Y89_5678 7f48380f7e1ecba84f1f0f2aa4d7a779 492 SUPERFAMILY SSF56112 49 176 1.28E-12 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5678 7f48380f7e1ecba84f1f0f2aa4d7a779 492 SUPERFAMILY SSF56112 289 460 2.08E-11 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_6219 016fdf1ab4dc66b285d17ff86288b01d 409 PIRSF PIRSF036542 1 409 7.8E-207 T 31-10-2018 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB Y89_6219 016fdf1ab4dc66b285d17ff86288b01d 409 Pfam PF07670 Nucleoside recognition 52 157 1.1E-7 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Y89_1207 5dc14a891720347324fcb626b990be3b 182 Pfam PF05433 Glycine zipper 2TM domain 72 113 2.3E-10 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 194 8.3E-12 T 31-10-2018 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 SUPERFAMILY SSF56784 1 229 5.35E-47 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 Gene3D G3DSA:1.10.150.240 16 97 5.4E-87 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 81 187 1.5E-18 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 157 177 5.9E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 5.9E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 5.9E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 139 155 5.9E-11 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 Gene3D G3DSA:3.40.50.1000 3 209 5.4E-87 T 31-10-2018 IPR023214 HAD superfamily Y89_4547 1ecc2a623651010d9f3848b7c056930c 233 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 1 200 2.1E-66 T 31-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 2.8E-46 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 SUPERFAMILY SSF47203 231 380 8.54E-48 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:1.10.540.10 6 124 1.3E-33 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 220 4.8E-24 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 122 7.9E-27 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:2.40.110.10 126 237 1.4E-42 T 31-10-2018 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 Gene3D G3DSA:1.20.140.10 238 382 2.0E-47 T 31-10-2018 Y89_3803 b401e99726aa53e3cf5c753016d67da0 382 SUPERFAMILY SSF56645 5 244 3.27E-74 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 SUPERFAMILY SSF55781 62 241 3.07E-38 T 31-10-2018 Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 Gene3D G3DSA:1.10.10.10 5 74 5.6E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 Pfam PF01614 Bacterial transcriptional regulator 128 238 1.8E-15 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 SUPERFAMILY SSF46785 7 74 3.51E-11 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 Gene3D G3DSA:3.30.450.40 75 237 1.3E-43 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 SMART SM00346 8 94 6.3E-7 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_1842 a2f923f98e8f616a5c91aa318fe58455 242 Pfam PF09339 IclR helix-turn-helix domain 8 55 4.3E-10 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_1815 b7b233b3ee11748a67666b96c9dd6bbc 295 SUPERFAMILY SSF89550 1 276 1.22E-49 T 31-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Y89_1815 b7b233b3ee11748a67666b96c9dd6bbc 295 Gene3D G3DSA:3.20.20.140 3 253 1.5E-77 T 31-10-2018 Y89_1815 b7b233b3ee11748a67666b96c9dd6bbc 295 Gene3D G3DSA:1.10.150.650 96 172 1.5E-77 T 31-10-2018 Y89_1815 b7b233b3ee11748a67666b96c9dd6bbc 295 SMART SM00481 3 68 1.1E-17 T 31-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Y89_1815 b7b233b3ee11748a67666b96c9dd6bbc 295 Pfam PF02811 PHP domain 4 71 4.8E-10 T 31-10-2018 IPR004013 PHP domain GO:0003824 Y89_1783 86c4218aa21e7b0df586681c56afae97 52 Pfam PF11752 Protein of unknown function (DUF3309) 4 52 4.5E-21 T 31-10-2018 IPR021738 Protein of unknown function DUF3309 Y89_3762 a08d8d99a1a0c71a780c75428c6a9de1 93 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 93 25.887 T 31-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Y89_3762 a08d8d99a1a0c71a780c75428c6a9de1 93 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 4.0E-37 T 31-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Y89_3762 a08d8d99a1a0c71a780c75428c6a9de1 93 SUPERFAMILY SSF51182 1 92 2.14E-36 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3762 a08d8d99a1a0c71a780c75428c6a9de1 93 Gene3D G3DSA:2.60.120.10 1 93 7.3E-36 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3222 d41aedab88a9816ade864bd269641f7d 220 SUPERFAMILY SSF53056 2 204 6.41E-67 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_3222 d41aedab88a9816ade864bd269641f7d 220 Pfam PF00484 Carbonic anhydrase 34 189 2.8E-51 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_3222 d41aedab88a9816ade864bd269641f7d 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_3222 d41aedab88a9816ade864bd269641f7d 220 Gene3D G3DSA:3.40.1050.10 1 202 5.9E-71 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_3222 d41aedab88a9816ade864bd269641f7d 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_3222 d41aedab88a9816ade864bd269641f7d 220 SMART SM00947 27 193 3.3E-68 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_3026 b2888571d585f46f0e18e1b286bc7ad9 239 Pfam PF03473 MOSC domain 51 164 2.1E-25 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y89_3026 b2888571d585f46f0e18e1b286bc7ad9 239 SUPERFAMILY SSF50800 8 228 6.8E-76 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_3026 b2888571d585f46f0e18e1b286bc7ad9 239 Pfam PF03475 3-alpha domain 175 217 2.4E-13 T 31-10-2018 IPR005163 3-alpha domain Y89_3026 b2888571d585f46f0e18e1b286bc7ad9 239 Gene3D G3DSA:2.40.33.20 7 236 1.9E-81 T 31-10-2018 Y89_5417 08a2ce7f4530e7ad5e9962365b1509d2 468 Pfam PF00202 Aminotransferase class-III 39 452 2.7E-82 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_5417 08a2ce7f4530e7ad5e9962365b1509d2 468 Gene3D G3DSA:3.40.640.10 74 353 6.6E-158 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5417 08a2ce7f4530e7ad5e9962365b1509d2 468 SUPERFAMILY SSF53383 20 457 3.13E-113 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5417 08a2ce7f4530e7ad5e9962365b1509d2 468 Gene3D G3DSA:3.90.1150.10 20 455 6.6E-158 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5417 08a2ce7f4530e7ad5e9962365b1509d2 468 PIRSF PIRSF000521 17 458 5.1E-24 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_4005 b3ded1ba07f5250ae9cef67d5c23fb7d 529 Pfam PF08443 RimK-like ATP-grasp domain 316 492 3.1E-5 T 31-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y89_4005 b3ded1ba07f5250ae9cef67d5c23fb7d 529 Gene3D G3DSA:3.30.470.20 400 516 1.5E-18 T 31-10-2018 Y89_4005 b3ded1ba07f5250ae9cef67d5c23fb7d 529 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 56 206 3.5E-44 T 31-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain Y89_4005 b3ded1ba07f5250ae9cef67d5c23fb7d 529 Gene3D G3DSA:3.30.1490.20 324 399 8.4E-7 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_4005 b3ded1ba07f5250ae9cef67d5c23fb7d 529 SUPERFAMILY SSF56059 306 514 7.07E-35 T 31-10-2018 Y89_1481 3a2fea79c4a65815e0ffee9d7146b091 474 Gene3D G3DSA:2.60.120.1380 346 463 2.1E-51 T 31-10-2018 IPR038639 AlgX, C-terminal domain superfamily Y89_1481 3a2fea79c4a65815e0ffee9d7146b091 474 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 64 325 2.1E-84 T 31-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain Y89_1481 3a2fea79c4a65815e0ffee9d7146b091 474 Pfam PF16824 C-terminal carbohydrate-binding module 346 465 2.2E-57 T 31-10-2018 IPR031798 Alginate biosynthesis protein AlgX, C-terminal carbohydrate-binding module Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Gene3D G3DSA:3.40.50.10260 11 221 4.8E-56 T 31-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 16 215 22.674 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 236 494 1.4E-65 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 16 213 2.7E-41 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Gene3D G3DSA:3.40.1190.20 230 499 1.1E-81 T 31-10-2018 IPR029056 Ribokinase-like Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Pfam PF01256 Carbohydrate kinase 252 487 2.6E-60 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 SUPERFAMILY SSF53613 234 495 2.29E-73 T 31-10-2018 IPR029056 Ribokinase-like Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 226 499 21.231 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 Pfam PF03853 YjeF-related protein N-terminus 36 194 1.3E-39 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 SUPERFAMILY SSF64153 14 251 3.79E-59 T 31-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Y89_5619 a1d8864e7fb2ebda426b3d590e5e47a6 502 PIRSF PIRSF017184 12 498 2.7E-127 T 31-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 Gene3D G3DSA:3.40.50.2300 2 128 1.7E-28 T 31-10-2018 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 Gene3D G3DSA:3.40.50.2300 134 266 2.4E-13 T 31-10-2018 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 SMART SM00448 141 253 0.051 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 SMART SM00448 6 117 2.0E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 SUPERFAMILY SSF52172 4 123 4.13E-30 T 31-10-2018 IPR011006 CheY-like superfamily Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 Pfam PF00072 Response regulator receiver domain 143 247 1.3E-7 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 Pfam PF00072 Response regulator receiver domain 8 114 7.9E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2141 bfd14d9373f9737c142e1f76b9dccab9 303 SUPERFAMILY SSF52172 140 265 2.99E-15 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1113 c4d54d250fbe4d5c65ef0b64a940fd56 520 Pfam PF09423 PhoD-like phosphatase 148 501 9.6E-88 T 31-10-2018 IPR018946 Alkaline phosphatase D-related Y89_1113 c4d54d250fbe4d5c65ef0b64a940fd56 520 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 42 128 1.2E-17 T 31-10-2018 IPR032093 Phospholipase D, N-terminal Y89_1113 c4d54d250fbe4d5c65ef0b64a940fd56 520 Gene3D G3DSA:3.60.21.70 155 504 3.0E-67 T 31-10-2018 IPR038607 PhoD-like superfamily Y89_1113 c4d54d250fbe4d5c65ef0b64a940fd56 520 SUPERFAMILY SSF56300 137 517 2.09E-44 T 31-10-2018 Y89_6198 d4f2137a88abeab187ea7a24de3c0cd9 287 Pfam PF13489 Methyltransferase domain 51 198 2.0E-15 T 31-10-2018 Y89_6198 d4f2137a88abeab187ea7a24de3c0cd9 287 Gene3D G3DSA:3.40.50.150 29 204 2.7E-26 T 31-10-2018 Y89_6198 d4f2137a88abeab187ea7a24de3c0cd9 287 SUPERFAMILY SSF53335 44 219 4.14E-29 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1565 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 7 69 2.1E-18 T 31-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Y89_1565 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 SUPERFAMILY SSF50331 6 69 3.16E-16 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_1565 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 Gene3D G3DSA:2.40.50.100 5 70 2.1E-19 T 31-10-2018 Y89_1565 b75f4ed8d1c66e2cc5586b1f0bdd8166 71 Pfam PF03459 TOBE domain 8 67 3.8E-16 T 31-10-2018 IPR005116 Transport-associated OB, type 1 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 Pfam PF00202 Aminotransferase class-III 49 463 9.9E-89 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 PIRSF PIRSF000521 33 154 2.9E-4 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 PIRSF PIRSF000521 141 466 1.4E-29 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 273 310 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 Gene3D G3DSA:3.40.640.10 85 354 6.1E-137 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 32 467 1.9E-174 T 31-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 SUPERFAMILY SSF53383 39 463 1.73E-115 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2787 47a11dc569ed7092d2fc5e67dc6d6a45 469 Gene3D G3DSA:3.90.1150.10 36 456 6.1E-137 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4144 c09abf35cb0ad3e3321bf16f992eae49 311 Gene3D G3DSA:3.40.250.10 193 309 7.2E-16 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4144 c09abf35cb0ad3e3321bf16f992eae49 311 SMART SM00450 209 306 1.3E-8 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_4144 c09abf35cb0ad3e3321bf16f992eae49 311 SUPERFAMILY SSF52821 192 308 3.8E-20 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_4144 c09abf35cb0ad3e3321bf16f992eae49 311 Pfam PF09335 SNARE associated Golgi protein 29 155 4.1E-14 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_4144 c09abf35cb0ad3e3321bf16f992eae49 311 Pfam PF00581 Rhodanese-like domain 209 302 1.1E-8 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_0693 9c75924315043c796f894b1d5ff56330 295 Pfam PF04865 Baseplate J-like protein 111 252 1.8E-23 T 31-10-2018 IPR006949 Baseplate protein J-like Y89_0693 9c75924315043c796f894b1d5ff56330 295 PIRSF PIRSF020481 1 295 7.1E-130 T 31-10-2018 IPR014507 Baseplate assembly protein J, predicted Y89_1686 a02b0854c24c7028e5a5c86858c0339a 291 Gene3D G3DSA:3.90.230.10 9 281 4.7E-20 T 31-10-2018 Y89_1686 a02b0854c24c7028e5a5c86858c0339a 291 Pfam PF00557 Metallopeptidase family M24 15 262 5.2E-24 T 31-10-2018 IPR000994 Peptidase M24 Y89_1686 a02b0854c24c7028e5a5c86858c0339a 291 SUPERFAMILY SSF55920 7 268 2.49E-21 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like Y89_2815 4d756d06b33931c371e95f2fbc889168 107 Gene3D G3DSA:1.10.10.10 4 81 3.6E-11 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2815 4d756d06b33931c371e95f2fbc889168 107 SUPERFAMILY SSF46785 6 74 2.66E-10 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2815 4d756d06b33931c371e95f2fbc889168 107 PIRSF PIRSF029502 1 98 1.8E-50 T 31-10-2018 IPR016921 Uncharacterised conserved protein UCP029502 Y89_1778 d58c3469e1ba20666a23035820e481e8 285 Gene3D G3DSA:3.40.190.100 113 219 1.0E-91 T 31-10-2018 Y89_1778 d58c3469e1ba20666a23035820e481e8 285 Gene3D G3DSA:3.40.190.10 31 284 1.0E-91 T 31-10-2018 Y89_1778 d58c3469e1ba20666a23035820e481e8 285 SUPERFAMILY SSF53850 23 284 2.61E-74 T 31-10-2018 Y89_1778 d58c3469e1ba20666a23035820e481e8 285 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 274 4.9E-61 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_3189 722e7ae44800d9b1c254e2bdc553f01a 169 SUPERFAMILY SSF54427 7 160 2.77E-37 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3189 722e7ae44800d9b1c254e2bdc553f01a 169 Pfam PF00866 Ring hydroxylating beta subunit 23 160 3.9E-39 T 31-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 Y89_3189 722e7ae44800d9b1c254e2bdc553f01a 169 Gene3D G3DSA:3.10.450.50 2 169 2.2E-43 T 31-10-2018 Y89_6339 f493c14d37daa06a8a979ae222132fd1 576 SUPERFAMILY SSF110849 36 137 2.79E-11 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_6339 f493c14d37daa06a8a979ae222132fd1 576 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 27 289 9.0E-122 T 31-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Y89_6339 f493c14d37daa06a8a979ae222132fd1 576 Pfam PF02195 ParB-like nuclease domain 39 125 1.6E-6 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_6339 f493c14d37daa06a8a979ae222132fd1 576 Pfam PF01316 Arginine repressor, DNA binding domain 169 195 1.9E-4 T 31-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 Y89_6339 f493c14d37daa06a8a979ae222132fd1 576 SMART SM00470 36 134 0.0087 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_3011 ade380273e518cbae461c95382a1fa98 333 Gene3D G3DSA:3.90.15.10 125 244 1.8E-82 T 31-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 Gene3D G3DSA:1.10.132.120 102 325 1.8E-82 T 31-10-2018 Y89_3011 ade380273e518cbae461c95382a1fa98 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 134 153 4.0E-7 T 31-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 178 194 4.0E-7 T 31-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 243 257 4.0E-7 T 31-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 157 171 4.0E-7 T 31-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 94 268 2.0E-27 T 31-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 Y89_3011 ade380273e518cbae461c95382a1fa98 333 SUPERFAMILY SSF56349 90 306 2.94E-67 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_3011 ade380273e518cbae461c95382a1fa98 333 Gene3D G3DSA:3.30.66.10 18 101 2.0E-33 T 31-10-2018 IPR035447 DNA topoisomerase I, N-terminal Y89_3011 ade380273e518cbae461c95382a1fa98 333 SUPERFAMILY SSF55869 34 95 3.14E-23 T 31-10-2018 IPR035447 DNA topoisomerase I, N-terminal Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 19 385 2.2E-84 T 31-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 Gene3D G3DSA:2.10.70.40 276 328 2.6E-46 T 31-10-2018 Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 248 386 2.3E-22 T 31-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 SUPERFAMILY SSF53955 204 279 8.62E-5 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 SMART SM00047 229 389 2.9E-38 T 31-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 Pfam PF10135 Rod binding protein 56 107 1.6E-16 T 31-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal Y89_4269 a1e2e469941eca64bf295356d4e5477b 400 Gene3D G3DSA:1.10.530.10 242 381 2.6E-46 T 31-10-2018 Y89_2287 af6ff79161253c9f06e12bcefc316b3f 299 Pfam PF03631 Virulence factor BrkB 24 276 1.7E-70 T 31-10-2018 IPR017039 Virulence factor BrkB Y89_2287 af6ff79161253c9f06e12bcefc316b3f 299 PIRSF PIRSF035875 7 296 2.9E-88 T 31-10-2018 IPR017039 Virulence factor BrkB Y89_2287 af6ff79161253c9f06e12bcefc316b3f 299 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 275 2.0E-44 T 31-10-2018 IPR017039 Virulence factor BrkB Y89_0353 62ebff684cccfc245247adc14d7160a4 423 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 192 6.2E-9 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_0353 62ebff684cccfc245247adc14d7160a4 423 Gene3D G3DSA:3.40.50.720 2 293 8.4E-39 T 31-10-2018 Y89_0353 62ebff684cccfc245247adc14d7160a4 423 Pfam PF13781 DoxX-like family 308 409 1.3E-23 T 31-10-2018 IPR025695 DoxX-like family Y89_0353 62ebff684cccfc245247adc14d7160a4 423 SUPERFAMILY SSF51735 1 259 5.48E-40 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1344 61294fe6f498eeec62258550ac89d2a2 274 Gene3D G3DSA:3.20.20.60 1 234 4.6E-69 T 31-10-2018 Y89_1344 61294fe6f498eeec62258550ac89d2a2 274 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 252 2.2E-71 T 31-10-2018 Y89_1344 61294fe6f498eeec62258550ac89d2a2 274 SUPERFAMILY SSF51621 5 268 3.86E-62 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_2867 5070643610c7c07a41bd0a7748eba12c 592 Gene3D G3DSA:3.30.420.10 146 355 2.2E-11 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_2867 5070643610c7c07a41bd0a7748eba12c 592 SUPERFAMILY SSF53098 147 343 4.55E-18 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_2867 5070643610c7c07a41bd0a7748eba12c 592 Pfam PF00665 Integrase core domain 151 297 2.2E-15 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_1384 baa13a0f23ecbed0395fefe145f1a22a 201 Gene3D G3DSA:3.30.420.10 6 201 1.1E-77 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_1384 baa13a0f23ecbed0395fefe145f1a22a 201 Hamap MF_00052_B Ribonuclease HII [rnhB]. 13 192 39.404 T 31-10-2018 IPR022898 Ribonuclease HII GO:0004523 Y89_1384 baa13a0f23ecbed0395fefe145f1a22a 201 Pfam PF01351 Ribonuclease HII 15 191 1.9E-42 T 31-10-2018 IPR024567 Ribonuclease HII/HIII domain Y89_1384 baa13a0f23ecbed0395fefe145f1a22a 201 SUPERFAMILY SSF53098 13 197 1.27E-71 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_1228 3eb7a74d6e10af5dee392a00151ac748 382 Pfam PF00155 Aminotransferase class I and II 27 379 2.0E-61 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_1228 3eb7a74d6e10af5dee392a00151ac748 382 Gene3D G3DSA:3.90.1150.10 14 379 7.4E-136 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1228 3eb7a74d6e10af5dee392a00151ac748 382 Gene3D G3DSA:3.40.640.10 39 278 7.4E-136 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1228 3eb7a74d6e10af5dee392a00151ac748 382 SUPERFAMILY SSF53383 2 381 7.85E-104 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 Pfam PF01740 STAS domain 404 485 7.3E-6 T 31-10-2018 IPR002645 STAS domain Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 SUPERFAMILY SSF52091 400 485 3.73E-10 T 31-10-2018 IPR036513 STAS domain superfamily Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 31-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 Gene3D G3DSA:3.30.750.24 388 484 8.1E-27 T 31-10-2018 IPR036513 STAS domain superfamily Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 Pfam PF00916 Sulfate permease family 13 141 2.3E-27 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y89_2625 3e683746cd4d186fd514bcdb96c9ca18 495 Pfam PF00916 Sulfate permease family 166 346 1.7E-28 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y89_5659 c1c24bf2377af0764733d38e800d692a 425 Gene3D G3DSA:3.40.50.11720 34 209 2.8E-49 T 31-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Y89_5659 c1c24bf2377af0764733d38e800d692a 425 Gene3D G3DSA:3.40.50.2000 218 404 7.1E-70 T 31-10-2018 Y89_5659 c1c24bf2377af0764733d38e800d692a 425 SUPERFAMILY SSF53756 54 413 9.77E-18 T 31-10-2018 Y89_5659 c1c24bf2377af0764733d38e800d692a 425 Pfam PF00534 Glycosyl transferases group 1 294 401 2.9E-6 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_5659 c1c24bf2377af0764733d38e800d692a 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 210 3.1E-67 T 31-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 Pfam PF00460 Flagella basal body rod protein 5 35 9.5E-11 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 8.7E-117 T 31-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 SUPERFAMILY SSF117143 92 222 2.48E-36 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 5.3E-32 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 4.2E-49 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Y89_4272 2aaaa5346e87c49bf9be3dc3a579885b 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 257 3.8E-26 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y89_4259 6685f78c8cc204313b70d9a7aac5dab5 126 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 122 1.7E-28 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Y89_4259 6685f78c8cc204313b70d9a7aac5dab5 126 Pfam PF02561 Flagellar protein FliS 8 124 2.3E-36 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Y89_4259 6685f78c8cc204313b70d9a7aac5dab5 126 PIRSF PIRSF039090 1 126 3.3E-47 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Y89_4259 6685f78c8cc204313b70d9a7aac5dab5 126 Gene3D G3DSA:1.20.120.340 1 126 2.9E-40 T 31-10-2018 Y89_4259 6685f78c8cc204313b70d9a7aac5dab5 126 SUPERFAMILY SSF101116 8 124 3.01E-38 T 31-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Gene3D G3DSA:2.40.110.10 189 295 2.4E-19 T 31-10-2018 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 395 414 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 71 184 5.2E-19 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 SUPERFAMILY SSF47203 296 423 3.87E-37 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 190 279 5.4E-10 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Gene3D G3DSA:1.20.140.10 296 427 7.9E-37 T 31-10-2018 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 297 423 1.9E-30 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 SUPERFAMILY SSF56645 66 288 9.29E-46 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_5666 b6b56ceef74e5739cff0e9e6e3301c16 427 Gene3D G3DSA:1.10.540.10 62 184 2.6E-22 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 Pfam PF03496 ADP-ribosyltransferase exoenzyme 246 432 3.8E-31 T 31-10-2018 IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 Pfam PF03545 Yersinia virulence determinant (YopE) 132 201 2.8E-33 T 31-10-2018 IPR014773 Virulence factor YopE, GAP domain Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 Gene3D G3DSA:3.90.176.10 234 410 1.9E-23 T 31-10-2018 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 SUPERFAMILY SSF47233 100 231 3.01E-51 T 31-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 Gene3D G3DSA:1.20.120.260 98 232 9.9E-47 T 31-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 SUPERFAMILY SSF56399 230 427 2.06E-33 T 31-10-2018 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 39 56 1.0E-27 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 23 36 1.0E-27 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 215 232 1.0E-27 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 181 199 1.0E-27 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_0054 e2ec06188b72fa0544b8307119b9a259 457 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 132 149 1.0E-27 T 31-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 Y89_3567 ea13500a036d6f5c73cef9079e2d89c5 396 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 267 394 1.1E-26 T 31-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 Y89_3567 ea13500a036d6f5c73cef9079e2d89c5 396 Pfam PF13511 Domain of unknown function (DUF4124) 145 182 1.1E-5 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_0847 2a5c719a84d85f040e68d36033a88133 462 SUPERFAMILY SSF50494 222 459 2.71E-34 T 31-10-2018 IPR009003 Peptidase S1, PA clan Y89_0847 2a5c719a84d85f040e68d36033a88133 462 Gene3D G3DSA:2.40.10.10 221 449 4.8E-46 T 31-10-2018 Y89_0847 2a5c719a84d85f040e68d36033a88133 462 Gene3D G3DSA:2.40.10.10 246 349 4.8E-46 T 31-10-2018 Y89_5142 e065e277bb47e3ab5f7b3b4782a03b0d 111 Pfam PF01527 Transposase 4 56 7.2E-11 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_5142 e065e277bb47e3ab5f7b3b4782a03b0d 111 SUPERFAMILY SSF46689 5 52 6.27E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0238 a32980400a20de82603f6cba5163da95 263 Gene3D G3DSA:3.40.50.1820 2 261 4.2E-63 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0238 a32980400a20de82603f6cba5163da95 263 SUPERFAMILY SSF53474 2 260 5.27E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0238 a32980400a20de82603f6cba5163da95 263 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 260 9.4E-98 T 31-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 Y89_0238 a32980400a20de82603f6cba5163da95 263 Pfam PF00561 alpha/beta hydrolase fold 22 140 4.1E-13 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0238 a32980400a20de82603f6cba5163da95 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 207 221 2.2E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0238 a32980400a20de82603f6cba5163da95 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.2E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0238 a32980400a20de82603f6cba5163da95 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.2E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0238 a32980400a20de82603f6cba5163da95 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.2E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Pfam PF00501 AMP-binding enzyme 30 469 6.0E-108 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:3.40.50.12780 14 462 2.0E-111 T 31-10-2018 Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 SUPERFAMILY SSF56801 21 561 4.19E-151 T 31-10-2018 Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Gene3D G3DSA:3.30.300.310 465 562 1.1E-31 T 31-10-2018 Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 478 552 6.0E-19 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_1712 57bb7a8daf4da088d12e7b1d1aa64cbc 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_0618 feadd7d0e71e080723ca9ceeedbc4be5 684 Pfam PF10145 Phage-related minor tail protein 96 288 5.0E-20 T 31-10-2018 IPR010090 Phage tail tape measure protein Y89_0618 feadd7d0e71e080723ca9ceeedbc4be5 684 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 55 393 2.8E-23 T 31-10-2018 IPR010090 Phage tail tape measure protein Y89_3960 dd090f3df4d2294a45e5104d9aa08613 494 SUPERFAMILY SSF53756 123 467 1.62E-39 T 31-10-2018 Y89_3960 dd090f3df4d2294a45e5104d9aa08613 494 Gene3D G3DSA:3.40.50.2000 289 457 9.9E-25 T 31-10-2018 Y89_3960 dd090f3df4d2294a45e5104d9aa08613 494 Pfam PF13692 Glycosyl transferases group 1 305 439 1.0E-14 T 31-10-2018 Y89_3257 db4a37e39e067113a45cbcbf5e4a4b63 98 Pfam PF13272 Putative 2/3 transmembrane domain holin 14 69 7.7E-19 T 31-10-2018 IPR025140 Putative 2/3 transmembrane domain holin Y89_5466 db4a37e39e067113a45cbcbf5e4a4b63 98 Pfam PF13272 Putative 2/3 transmembrane domain holin 14 69 7.7E-19 T 31-10-2018 IPR025140 Putative 2/3 transmembrane domain holin Y89_2876 db4a37e39e067113a45cbcbf5e4a4b63 98 Pfam PF13272 Putative 2/3 transmembrane domain holin 14 69 7.7E-19 T 31-10-2018 IPR025140 Putative 2/3 transmembrane domain holin Y89_1092 d912f53e0cba7543cc2ceb533e6d21ba 259 Gene3D G3DSA:3.40.190.10 26 257 3.8E-100 T 31-10-2018 Y89_1092 d912f53e0cba7543cc2ceb533e6d21ba 259 Pfam PF03180 NLPA lipoprotein 25 259 1.6E-101 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_1092 d912f53e0cba7543cc2ceb533e6d21ba 259 SUPERFAMILY SSF53850 23 259 3.16E-85 T 31-10-2018 Y89_1092 d912f53e0cba7543cc2ceb533e6d21ba 259 Gene3D G3DSA:3.40.190.10 105 209 3.8E-100 T 31-10-2018 Y89_1092 d912f53e0cba7543cc2ceb533e6d21ba 259 PIRSF PIRSF002854 1 259 3.1E-103 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_1958 44129457d9ec1e29007980a7eb64e180 455 Pfam PF13492 GAF domain 181 304 2.2E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_1958 44129457d9ec1e29007980a7eb64e180 455 Pfam PF16963 PelD GGDEF domain 321 444 3.6E-35 T 31-10-2018 IPR031583 PelD, GGDEF domain Y89_1958 44129457d9ec1e29007980a7eb64e180 455 SUPERFAMILY SSF55781 181 313 1.28E-8 T 31-10-2018 Y89_1958 44129457d9ec1e29007980a7eb64e180 455 Gene3D G3DSA:3.30.450.40 155 318 3.3E-53 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_1958 44129457d9ec1e29007980a7eb64e180 455 Gene3D G3DSA:3.30.70.2880 319 455 1.3E-71 T 31-10-2018 IPR038367 PelD, GGDEF domain superfamily Y89_0379 3127d1972d86b18eeb58578caa257253 192 Pfam PF01553 Acyltransferase 31 146 8.1E-10 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_0379 3127d1972d86b18eeb58578caa257253 192 SUPERFAMILY SSF69593 23 164 7.32E-21 T 31-10-2018 Y89_0379 3127d1972d86b18eeb58578caa257253 192 SMART SM00563 38 150 1.9E-18 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 Gene3D G3DSA:4.10.520.10 2 98 5.9E-37 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 Pfam PF00216 Bacterial DNA-binding protein 4 92 1.6E-31 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 SMART SM00411 4 93 2.0E-41 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 SUPERFAMILY SSF47729 4 93 2.94E-31 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 30.539 T 31-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 97 1.3E-54 T 31-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.6E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.6E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_2306 c17c62d0467f3ba379d4298e2891e80d 100 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.6E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 Pfam PF00551 Formyl transferase 91 266 6.3E-36 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PIRSF PIRSF036480 5 285 6.7E-97 T 31-10-2018 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 113 140 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 91 113 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 237 259 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 259 284 1.6E-43 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 Gene3D G3DSA:3.40.50.170 90 285 2.4E-76 T 31-10-2018 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 SUPERFAMILY SSF53328 92 284 3.53E-59 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 285 42.906 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Y89_6159 b89286601533ceb56e4daa65caa484ea 285 Gene3D G3DSA:3.30.70.260 1 89 5.8E-17 T 31-10-2018 Y89_2942 771c17ad02407e6cd438cda711353890 210 SUPERFAMILY SSF47413 29 91 9.65E-16 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2942 771c17ad02407e6cd438cda711353890 210 Pfam PF01381 Helix-turn-helix 36 86 3.0E-12 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_2942 771c17ad02407e6cd438cda711353890 210 SMART SM00530 33 88 1.7E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_2942 771c17ad02407e6cd438cda711353890 210 Gene3D G3DSA:2.60.120.10 116 209 2.1E-27 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2942 771c17ad02407e6cd438cda711353890 210 Pfam PF07883 Cupin domain 143 201 1.1E-10 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_2942 771c17ad02407e6cd438cda711353890 210 Gene3D G3DSA:1.10.260.40 23 94 9.9E-17 T 31-10-2018 Y89_2942 771c17ad02407e6cd438cda711353890 210 SUPERFAMILY SSF51182 73 207 1.54E-20 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5631 8a48ecc741c11db0a7fc6b3220bfc63c 512 Pfam PF10144 Bacterial virulence factor haemolysin 30 158 5.6E-8 T 31-10-2018 IPR019305 Uncharacterised protein family Smp Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 SUPERFAMILY SSF48613 107 321 5.72E-25 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 Gene3D G3DSA:1.10.1240.20 6 93 2.8E-49 T 31-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 Pfam PF14518 Iron-containing redox enzyme 159 276 1.3E-13 T 31-10-2018 Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 Gene3D G3DSA:1.20.910.10 103 328 4.0E-53 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 Pfam PF14515 Haem-oxygenase-associated N-terminal helices 1 93 3.5E-51 T 31-10-2018 IPR029474 Haem-oxygenase-associated, N-terminal helices Y89_1509 b0f4761cb06a7b11710b8c71bd550767 328 SMART SM01236 174 276 3.7E-21 T 31-10-2018 Y89_3384 e7d6939db4e899fb9b03e5a43334ec32 379 Pfam PF00199 Catalase 73 190 3.6E-11 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3384 e7d6939db4e899fb9b03e5a43334ec32 379 SUPERFAMILY SSF56634 25 378 4.06E-85 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Y89_3384 e7d6939db4e899fb9b03e5a43334ec32 379 Gene3D G3DSA:1.20.1280.120 71 368 1.3E-30 T 31-10-2018 Y89_3384 e7d6939db4e899fb9b03e5a43334ec32 379 Gene3D G3DSA:2.40.180.20 88 357 1.3E-30 T 31-10-2018 Y89_3338 0684a7f673546a71064bb8fdb66d7d4b 41 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 20 40 2.5E-12 T 31-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y89_3338 0684a7f673546a71064bb8fdb66d7d4b 41 Pfam PF08042 PqqA family 19 37 1.9E-10 T 31-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y89_3338 0684a7f673546a71064bb8fdb66d7d4b 41 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 19 41 11.953 T 31-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 Y89_3590 1e8b3b51ab262dda3307873085636689 240 Pfam PF00117 Glutamine amidotransferase class-I 92 191 3.5E-10 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_3590 1e8b3b51ab262dda3307873085636689 240 Gene3D G3DSA:3.40.50.880 18 233 3.3E-39 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3590 1e8b3b51ab262dda3307873085636689 240 SUPERFAMILY SSF52317 3 228 1.3E-39 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_0076 428a56282d04345de3fa5a5e2386d93c 180 Gene3D G3DSA:2.160.10.10 1 180 2.4E-53 T 31-10-2018 Y89_0076 428a56282d04345de3fa5a5e2386d93c 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 128 3.0E-6 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_0076 428a56282d04345de3fa5a5e2386d93c 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 45 1.3E-5 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_0076 428a56282d04345de3fa5a5e2386d93c 180 SUPERFAMILY SSF51161 3 173 6.38E-44 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_3995 537fe15e7803afacb69f1a2f4494f70b 141 Gene3D G3DSA:3.30.70.1060 1 117 6.0E-35 T 31-10-2018 Y89_3995 537fe15e7803afacb69f1a2f4494f70b 141 SUPERFAMILY SSF54909 1 118 4.83E-37 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3995 537fe15e7803afacb69f1a2f4494f70b 141 Pfam PF03795 YCII-related domain 1 114 2.9E-31 T 31-10-2018 IPR005545 YCII-related Y89_0349 d67371e06fd524b651f5d3e09640fe2c 110 Gene3D G3DSA:2.30.29.80 1 110 3.9E-41 T 31-10-2018 Y89_0349 d67371e06fd524b651f5d3e09640fe2c 110 SUPERFAMILY SSF160113 1 54 1.24E-16 T 31-10-2018 IPR036913 YegP-like superfamily Y89_0349 d67371e06fd524b651f5d3e09640fe2c 110 Pfam PF07411 Domain of unknown function (DUF1508) 10 53 1.7E-18 T 31-10-2018 IPR010879 Domain of unknown function DUF1508 Y89_0349 d67371e06fd524b651f5d3e09640fe2c 110 Pfam PF07411 Domain of unknown function (DUF1508) 61 108 1.9E-19 T 31-10-2018 IPR010879 Domain of unknown function DUF1508 Y89_0349 d67371e06fd524b651f5d3e09640fe2c 110 SUPERFAMILY SSF160113 54 107 1.96E-15 T 31-10-2018 IPR036913 YegP-like superfamily Y89_1126 56d5c59198065203cdde668c9e52e2d7 300 SUPERFAMILY SSF103481 35 137 3.47E-13 T 31-10-2018 Y89_1126 56d5c59198065203cdde668c9e52e2d7 300 SUPERFAMILY SSF103481 184 287 1.31E-10 T 31-10-2018 Y89_1126 56d5c59198065203cdde668c9e52e2d7 300 Pfam PF00892 EamA-like transporter family 5 134 1.9E-11 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1126 56d5c59198065203cdde668c9e52e2d7 300 Pfam PF00892 EamA-like transporter family 150 285 1.9E-14 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0119 ca6c48466a5683aa24913dcc16163538 295 Gene3D G3DSA:1.20.120.80 77 295 3.2E-68 T 31-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0119 ca6c48466a5683aa24913dcc16163538 295 Gene3D G3DSA:1.10.287.70 1 76 1.4E-24 T 31-10-2018 Y89_0119 ca6c48466a5683aa24913dcc16163538 295 SUPERFAMILY SSF81452 3 294 7.85E-85 T 31-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0119 ca6c48466a5683aa24913dcc16163538 295 Pfam PF00510 Cytochrome c oxidase subunit III 7 294 2.3E-50 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0424 77336e25733f6318e443d260da6353b7 423 SUPERFAMILY SSF51556 56 367 3.08E-87 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_0424 77336e25733f6318e443d260da6353b7 423 SUPERFAMILY SSF51338 1 422 4.32E-24 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0424 77336e25733f6318e443d260da6353b7 423 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 21 421 2.9E-87 T 31-10-2018 Y89_0424 77336e25733f6318e443d260da6353b7 423 Gene3D G3DSA:2.30.40.10 9 419 3.1E-112 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0424 77336e25733f6318e443d260da6353b7 423 Pfam PF01979 Amidohydrolase family 193 419 8.7E-13 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_0424 77336e25733f6318e443d260da6353b7 423 Gene3D G3DSA:3.20.20.140 57 368 3.1E-112 T 31-10-2018 Y89_5899 a2f6744c59b397f77c6ed6e71cab90fe 109 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 100 5.9E-34 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_5899 a2f6744c59b397f77c6ed6e71cab90fe 109 Pfam PF09498 Protein of unknown function (DUF2388) 31 100 3.2E-32 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_3836 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.970 359 582 1.7E-66 T 31-10-2018 Y89_3836 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52518 369 567 3.13E-51 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3836 0180254f306236110732afd51bb41882 591 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 590 0.0 T 31-10-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 Y89_3836 0180254f306236110732afd51bb41882 591 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 2.0E-51 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_3836 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52518 3 184 2.4E-48 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3836 0180254f306236110732afd51bb41882 591 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 328 3.1E-35 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_3836 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.970 2 171 2.4E-64 T 31-10-2018 Y89_3836 0180254f306236110732afd51bb41882 591 Gene3D G3DSA:3.40.50.1220 193 358 2.2E-50 T 31-10-2018 Y89_3836 0180254f306236110732afd51bb41882 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 553 3.5E-33 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_3836 0180254f306236110732afd51bb41882 591 SUPERFAMILY SSF52467 161 350 4.24E-48 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_3373 f111b5ed1181faadde3281a996a4e54d 421 Pfam PF13557 Putative MetA-pathway of phenol degradation 213 417 3.8E-6 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Y89_1526 6ddb749ed148fefdad374cff3a595247 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 187 2.4E-51 T 31-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Y89_1526 6ddb749ed148fefdad374cff3a595247 188 Pfam PF00692 dUTPase 76 184 9.1E-9 T 31-10-2018 IPR029054 dUTPase-like Y89_1526 6ddb749ed148fefdad374cff3a595247 188 SUPERFAMILY SSF51283 3 187 1.83E-53 T 31-10-2018 IPR036157 dUTPase-like superfamily Y89_1526 6ddb749ed148fefdad374cff3a595247 188 Gene3D G3DSA:2.70.40.10 1 159 2.5E-54 T 31-10-2018 IPR036157 dUTPase-like superfamily Y89_1526 6ddb749ed148fefdad374cff3a595247 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 188 28.976 T 31-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Y89_4618 eeba188558ddd0dc03be3a8e76aef548 213 Pfam PF13460 NAD(P)H-binding 7 198 6.4E-35 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_4618 eeba188558ddd0dc03be3a8e76aef548 213 Gene3D G3DSA:3.40.50.720 2 213 4.2E-60 T 31-10-2018 Y89_4618 eeba188558ddd0dc03be3a8e76aef548 213 SUPERFAMILY SSF51735 1 211 6.3E-40 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5957 7c088628a36b6a6c1c02169e58e0ddc4 343 Gene3D G3DSA:1.20.58.340 267 343 3.3E-26 T 31-10-2018 Y89_5957 7c088628a36b6a6c1c02169e58e0ddc4 343 Gene3D G3DSA:3.30.460.20 7 141 1.4E-8 T 31-10-2018 Y89_5957 7c088628a36b6a6c1c02169e58e0ddc4 343 SUPERFAMILY SSF143865 11 282 5.75E-42 T 31-10-2018 Y89_5957 7c088628a36b6a6c1c02169e58e0ddc4 343 SUPERFAMILY SSF144083 278 340 9.29E-20 T 31-10-2018 Y89_5957 7c088628a36b6a6c1c02169e58e0ddc4 343 Pfam PF01544 CorA-like Mg2+ transporter protein 45 338 7.1E-54 T 31-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y89_0011 4a927c409d65092df4b33a5538c6fd10 257 SUPERFAMILY SSF69593 15 240 2.09E-36 T 31-10-2018 Y89_0011 4a927c409d65092df4b33a5538c6fd10 257 SMART SM00563 76 190 3.8E-31 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_0011 4a927c409d65092df4b33a5538c6fd10 257 Pfam PF01553 Acyltransferase 63 187 8.8E-23 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_3212 ab45e3cc43e23eab638abec453ec6b95 407 SUPERFAMILY SSF53474 14 139 7.3E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3212 ab45e3cc43e23eab638abec453ec6b95 407 Gene3D G3DSA:3.40.50.1820 10 171 2.8E-7 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3212 ab45e3cc43e23eab638abec453ec6b95 407 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 23 286 2.4E-75 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 Gene3D G3DSA:3.30.70.2740 350 431 4.8E-8 T 31-10-2018 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 59 470 5.1E-172 T 31-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 SUPERFAMILY SSF56176 19 231 7.01E-65 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 Pfam PF01565 FAD binding domain 56 194 5.5E-36 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 470 3.1E-73 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 Gene3D G3DSA:1.10.45.10 432 472 3.8E-9 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 SUPERFAMILY SSF55103 204 473 9.16E-78 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_6093 d3c819cb30e9d943c2323a77e8e7656d 499 Gene3D G3DSA:3.30.465.40 30 249 5.2E-59 T 31-10-2018 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 Gene3D G3DSA:3.40.605.10 35 490 1.2E-171 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 Pfam PF00171 Aldehyde dehydrogenase family 32 491 3.6E-166 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 Gene3D G3DSA:3.40.309.10 271 459 1.2E-171 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 SUPERFAMILY SSF53720 16 494 3.4E-163 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_0833 808213d99394bfa36a67f5c2a12157e1 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 SUPERFAMILY SSF56770 44 190 6.54E-64 T 31-10-2018 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 Gene3D G3DSA:3.40.50.12280 25 193 2.2E-69 T 31-10-2018 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 42.636 T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 47 183 5.6E-68 T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2450 0603bd0c7e77b4f31eac8a17df317b83 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 175 1.1E-21 T 31-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4149 0de0460f16c07376e88de9af2c2f51e4 185 SUPERFAMILY SSF52218 6 176 1.04E-52 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4149 0de0460f16c07376e88de9af2c2f51e4 185 Gene3D G3DSA:3.40.50.360 1 184 3.6E-65 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_4149 0de0460f16c07376e88de9af2c2f51e4 185 Pfam PF03358 NADPH-dependent FMN reductase 6 150 2.8E-39 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Gene3D G3DSA:3.90.640.10 298 352 9.1E-16 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 SUPERFAMILY SSF53067 9 175 7.45E-28 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Gene3D G3DSA:3.30.420.40 10 177 3.6E-34 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Gene3D G3DSA:3.30.420.40 178 221 3.6E-34 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Gene3D G3DSA:3.30.420.40 353 398 9.1E-16 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 184 197 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Pfam PF00012 Hsp70 protein 299 395 6.4E-10 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 Pfam PF00012 Hsp70 protein 10 230 4.0E-13 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 374 388 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 SUPERFAMILY SSF53067 179 416 4.57E-35 T 31-10-2018 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 PRINTS PR00301 70kDa heat shock protein signature 8 21 1.2E-7 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 PRINTS PR00301 70kDa heat shock protein signature 190 200 1.2E-7 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 PRINTS PR00301 70kDa heat shock protein signature 124 144 1.2E-7 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_5542 f52a06057b8449ec8f2f3cd00e42eb87 421 PRINTS PR00301 70kDa heat shock protein signature 36 48 1.2E-7 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Y89_2550 5aa5bdb6cb3520382a288b8930e175f5 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 112 132 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_2550 5aa5bdb6cb3520382a288b8930e175f5 272 Gene3D G3DSA:3.90.226.10 2 213 2.0E-67 T 31-10-2018 Y89_2550 5aa5bdb6cb3520382a288b8930e175f5 272 SUPERFAMILY SSF52096 16 271 6.01E-81 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2550 5aa5bdb6cb3520382a288b8930e175f5 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 271 4.4E-61 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2550 5aa5bdb6cb3520382a288b8930e175f5 272 Gene3D G3DSA:1.10.12.10 214 272 8.1E-18 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 SUPERFAMILY SSF50249 3 123 3.48E-51 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 6.4E-70 T 31-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PIRSF PIRSF002133 1 123 9.8E-53 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 Pfam PF00164 Ribosomal protein S12/S23 12 123 3.6E-42 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.002 T 31-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 Gene3D G3DSA:2.40.50.140 1 123 2.7E-62 T 31-10-2018 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0754 d35b6f1d8024dfdd575ece7c4321a1d8 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.4E-60 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_3885 8752be372a06b409e99c9e0dd3e8ef8b 277 SUPERFAMILY SSF52540 8 266 1.47E-55 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3885 8752be372a06b409e99c9e0dd3e8ef8b 277 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 8 247 7.2E-25 T 31-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Y89_3885 8752be372a06b409e99c9e0dd3e8ef8b 277 PIRSF PIRSF003092 3 270 1.2E-82 T 31-10-2018 IPR025501 ATP binding protein MinD Y89_3885 8752be372a06b409e99c9e0dd3e8ef8b 277 Gene3D G3DSA:3.40.50.300 8 249 7.0E-59 T 31-10-2018 Y89_3544 e09c8ce7ff404370850209cb3630360c 155 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 3.9E-15 T 31-10-2018 IPR010710 Protein of unknown function DUF1289 Y89_3262 8fe8ef3bae4cf14b0fb6c354831e979e 104 SUPERFAMILY SSF46785 11 80 9.88E-6 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3262 8fe8ef3bae4cf14b0fb6c354831e979e 104 Gene3D G3DSA:1.10.10.10 2 80 9.2E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3247 27179c694cb9f41519ae45126ced6e42 191 Pfam PF05069 Phage virion morphogenesis family 11 183 2.1E-34 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_3247 27179c694cb9f41519ae45126ced6e42 191 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 17 119 3.9E-14 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_3781 ec31775e5d1cf902f3e41bef1b171559 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 9 45 3.1E-9 T 31-10-2018 IPR008621 Cbb3-type cytochrome oxidase component Y89_5917 c248995ccc40ef19a2b0de25dc07d3a2 152 Gene3D G3DSA:3.10.590.10 1 152 1.7E-61 T 31-10-2018 Y89_5917 c248995ccc40ef19a2b0de25dc07d3a2 152 SUPERFAMILY SSF88697 3 151 4.31E-58 T 31-10-2018 IPR015947 PUA-like superfamily Y89_5917 c248995ccc40ef19a2b0de25dc07d3a2 152 Pfam PF01878 EVE domain 3 147 6.9E-53 T 31-10-2018 IPR002740 EVE domain Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 Gene3D G3DSA:3.40.190.10 91 292 3.4E-63 T 31-10-2018 Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 8.5E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 SUPERFAMILY SSF46785 4 112 5.9E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 Pfam PF03466 LysR substrate binding domain 90 294 2.5E-39 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 Gene3D G3DSA:1.10.10.10 3 88 3.2E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 Gene3D G3DSA:3.40.190.10 162 267 3.4E-63 T 31-10-2018 Y89_0848 8c3bc122de6c882214a6e6f010428f02 307 SUPERFAMILY SSF53850 90 300 2.35E-41 T 31-10-2018 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 197 220 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 109 126 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 153 171 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 27 49 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 74 95 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 172 193 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 PRINTS PR00721 Stomatin signature 129 152 1.6E-60 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 Gene3D G3DSA:3.30.479.30 48 179 2.5E-47 T 31-10-2018 Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 SMART SM00244 20 177 4.5E-63 T 31-10-2018 IPR001107 Band 7 domain Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 SUPERFAMILY SSF117892 51 184 3.4E-43 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_0473 4143908a93682f5e0abe08bd2f14ec70 263 Pfam PF01145 SPFH domain / Band 7 family 25 193 2.0E-34 T 31-10-2018 IPR001107 Band 7 domain Y89_3211 63e9a6b22e2651744c96c6e983fc614a 351 Pfam PF05275 Copper resistance protein B precursor (CopB) 147 351 8.7E-93 T 31-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 Y89_0845 0624a3c487fe6dcf862ebed54770e694 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 116 1.7E-16 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Y89_0845 0624a3c487fe6dcf862ebed54770e694 133 Gene3D G3DSA:3.90.1590.10 1 124 5.5E-17 T 31-10-2018 Y89_0845 0624a3c487fe6dcf862ebed54770e694 133 SUPERFAMILY SSF51316 1 132 1.15E-41 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_4825 7a1bc3e471a17e6231a3f58fe05f1f51 190 SUPERFAMILY SSF101874 18 188 2.09E-15 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_4825 7a1bc3e471a17e6231a3f58fe05f1f51 190 SMART SM00867 19 188 1.1E-9 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_4825 7a1bc3e471a17e6231a3f58fe05f1f51 190 Gene3D G3DSA:2.40.128.110 16 190 1.3E-45 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Y89_4825 7a1bc3e471a17e6231a3f58fe05f1f51 190 Pfam PF04264 YceI-like domain 20 160 1.2E-7 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Y89_4825 7a1bc3e471a17e6231a3f58fe05f1f51 190 PIRSF PIRSF029811 1 190 6.8E-62 T 31-10-2018 IPR027016 Uncharacterised protein with YceI domain Y89_6357 d174527f96c5c4203df2c081022fdda1 359 Gene3D G3DSA:1.20.81.30 216 322 1.6E-7 T 31-10-2018 Y89_6357 d174527f96c5c4203df2c081022fdda1 359 Pfam PF00482 Type II secretion system (T2SS), protein F 227 348 2.5E-14 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_6357 d174527f96c5c4203df2c081022fdda1 359 Pfam PF00482 Type II secretion system (T2SS), protein F 25 151 1.0E-16 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_6357 d174527f96c5c4203df2c081022fdda1 359 Gene3D G3DSA:1.20.81.30 11 132 1.7E-23 T 31-10-2018 Y89_5655 69938d237a53a9b816b834124145ad12 215 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 89 200 1.3E-25 T 31-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal Y89_5655 69938d237a53a9b816b834124145ad12 215 SUPERFAMILY SSF46689 8 85 1.35E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5655 69938d237a53a9b816b834124145ad12 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 7.5E-13 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5655 69938d237a53a9b816b834124145ad12 215 Gene3D G3DSA:1.10.357.10 1 215 6.7E-95 T 31-10-2018 Y89_5655 69938d237a53a9b816b834124145ad12 215 SUPERFAMILY SSF48498 86 200 9.79E-19 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0599 d4efc34d714347d98638ca680c290157 481 Gene3D G3DSA:3.40.50.300 12 414 1.0E-15 T 31-10-2018 Y89_0599 d4efc34d714347d98638ca680c290157 481 SMART SM00382 30 413 0.0049 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0599 d4efc34d714347d98638ca680c290157 481 SUPERFAMILY SSF52540 29 405 1.03E-13 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0599 d4efc34d714347d98638ca680c290157 481 Pfam PF13175 AAA ATPase domain 29 397 3.5E-12 T 31-10-2018 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 Gene3D G3DSA:1.10.510.10 252 532 2.7E-40 T 31-10-2018 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 Pfam PF13672 Protein phosphatase 2C 17 186 4.7E-8 T 31-10-2018 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 Pfam PF00069 Protein kinase domain 265 460 5.5E-26 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 SMART SM00332 1 226 2.9E-5 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 SUPERFAMILY SSF81606 4 228 8.89E-46 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 SMART SM00220 261 512 2.2E-13 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 SMART SM00331 22 228 1.0E-11 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 Gene3D G3DSA:3.60.40.10 3 231 1.5E-40 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_3550 b54739bc0dada2f653d955d116a0574a 555 SUPERFAMILY SSF56112 245 512 1.48E-50 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_0486 6fbe1f464b9fbfad1de5d9fe5a56f549 452 PIRSF PIRSF004548 1 451 2.2E-178 T 31-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Y89_0486 6fbe1f464b9fbfad1de5d9fe5a56f549 452 Pfam PF06123 Inner membrane protein CreD 5 438 4.7E-167 T 31-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 51 123 4.5E-15 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 59 70 4.3E-7 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 113 124 4.3E-7 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 70 80 4.3E-7 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 PRINTS PR00607 Class IE cytochrome C signature 98 110 4.3E-7 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 Gene3D G3DSA:1.10.760.10 51 127 6.4E-28 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6066 99ef45c503c7e262d51c9a9948064ba3 129 SUPERFAMILY SSF46626 54 124 2.4E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_1762 136bae3326b77687cabfbf4e132820e9 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 270 5.5E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1762 136bae3326b77687cabfbf4e132820e9 279 SUPERFAMILY SSF161098 7 275 8.11E-43 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1762 136bae3326b77687cabfbf4e132820e9 279 Gene3D G3DSA:1.10.3720.10 4 268 4.5E-36 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1009 d62c52b732e804be69728c5a214be916 151 SUPERFAMILY SSF54637 9 146 5.08E-37 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1009 d62c52b732e804be69728c5a214be916 151 Pfam PF01575 MaoC like domain 13 116 8.2E-26 T 31-10-2018 IPR002539 MaoC-like dehydratase domain Y89_1009 d62c52b732e804be69728c5a214be916 151 Gene3D G3DSA:3.10.129.10 3 149 1.4E-46 T 31-10-2018 Y89_2039 e9fe797aa18609ccd8c92bc5d6fa88be 332 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 326 1.2E-106 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Y89_2039 e9fe797aa18609ccd8c92bc5d6fa88be 332 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 27 313 2.7E-79 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Y89_2039 e9fe797aa18609ccd8c92bc5d6fa88be 332 SUPERFAMILY SSF52540 53 191 7.53E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2039 e9fe797aa18609ccd8c92bc5d6fa88be 332 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 3 331 39.24 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Y89_2731 cbe9bcbdaa4b651346f63a0d96c5fccd 353 SUPERFAMILY SSF51182 6 347 6.36E-117 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2731 cbe9bcbdaa4b651346f63a0d96c5fccd 353 TIGRFAM TIGR02272 gentisate_1_2: gentisate 1,2-dioxygenase 9 348 3.4E-163 T 31-10-2018 IPR011960 Gentisate 1,2-dioxygenase Y89_2731 cbe9bcbdaa4b651346f63a0d96c5fccd 353 Pfam PF07883 Cupin domain 93 164 1.3E-24 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_2731 cbe9bcbdaa4b651346f63a0d96c5fccd 353 Gene3D G3DSA:2.60.120.10 5 352 1.7E-123 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 SUPERFAMILY SSF52768 2 343 3.41E-87 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 Gene3D G3DSA:3.40.800.20 1 343 5.7E-121 T 31-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 Pfam PF00850 Histone deacetylase domain 29 338 3.0E-63 T 31-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 PRINTS PR01270 Histone deacetylase superfamily signature 157 180 9.2E-14 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 PRINTS PR01270 Histone deacetylase superfamily signature 190 205 9.2E-14 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_3940 9cbeab272561a8b4371b63231990ce2f 346 PRINTS PR01270 Histone deacetylase superfamily signature 276 286 9.2E-14 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_2983 cf3347d996e404fd25e7fba784904cbb 171 Gene3D G3DSA:3.40.630.30 1 152 1.6E-24 T 31-10-2018 Y89_2983 cf3347d996e404fd25e7fba784904cbb 171 Pfam PF13673 Acetyltransferase (GNAT) domain 49 139 1.3E-12 T 31-10-2018 IPR000182 GNAT domain Y89_2983 cf3347d996e404fd25e7fba784904cbb 171 SUPERFAMILY SSF55729 1 138 2.4E-23 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2679 b06df9ff89e725a8e17ba1cd3da1d7ea 163 SUPERFAMILY SSF54427 1 163 6.13E-51 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2679 b06df9ff89e725a8e17ba1cd3da1d7ea 163 Gene3D G3DSA:3.10.450.50 5 163 7.2E-45 T 31-10-2018 Y89_2679 b06df9ff89e725a8e17ba1cd3da1d7ea 163 TIGRFAM TIGR03231 anthran_1_2_B: anthranilate 1,2-dioxygenase, small subunit 9 163 7.1E-95 T 31-10-2018 IPR017640 Anthranilate 1,2-dioxygenase, small subunit GO:0019439 KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 Y89_2679 b06df9ff89e725a8e17ba1cd3da1d7ea 163 Pfam PF00866 Ring hydroxylating beta subunit 15 155 7.7E-48 T 31-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 SUPERFAMILY SSF53901 1 264 1.85E-73 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 Gene3D G3DSA:3.40.47.10 6 273 1.2E-147 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 PIRSF PIRSF000429 1 391 1.1E-130 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 388 3.7E-139 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 Pfam PF02803 Thiolase, C-terminal domain 267 389 1.2E-47 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 Gene3D G3DSA:3.40.47.10 127 387 1.2E-147 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 Pfam PF00108 Thiolase, N-terminal domain 4 259 2.8E-72 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Y89_2590 e7dde6c7138ba2d3f56ae341fad1de22 391 SUPERFAMILY SSF53901 268 389 1.28E-43 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4517 f263d46c89265c29cb125f11f7f9f920 207 TIGRFAM TIGR03398 plc_access_R: phospholipase C accessory protein PlcR 66 205 3.6E-62 T 31-10-2018 IPR017769 Phospholipase C accessory protein PlcR Y89_3950 b36badca6774ef79c1594650b5154632 306 SUPERFAMILY SSF46785 11 93 5.69E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3950 b36badca6774ef79c1594650b5154632 306 Gene3D G3DSA:3.40.190.10 97 296 2.0E-45 T 31-10-2018 Y89_3950 b36badca6774ef79c1594650b5154632 306 Gene3D G3DSA:3.40.190.10 178 273 2.0E-45 T 31-10-2018 Y89_3950 b36badca6774ef79c1594650b5154632 306 SUPERFAMILY SSF53850 97 301 5.25E-31 T 31-10-2018 Y89_3950 b36badca6774ef79c1594650b5154632 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3950 b36badca6774ef79c1594650b5154632 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3950 b36badca6774ef79c1594650b5154632 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 1.4E-8 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3950 b36badca6774ef79c1594650b5154632 306 Pfam PF03466 LysR substrate binding domain 102 297 4.4E-18 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3950 b36badca6774ef79c1594650b5154632 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 4.2E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3950 b36badca6774ef79c1594650b5154632 306 Gene3D G3DSA:1.10.10.10 6 96 2.5E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5377 29e9aeb72580bab87f79aa6b82e9c86a 176 Pfam PF04355 SmpA / OmlA family 35 101 1.9E-25 T 31-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y89_5377 29e9aeb72580bab87f79aa6b82e9c86a 176 Gene3D G3DSA:3.30.1450.10 34 114 1.6E-29 T 31-10-2018 IPR037873 BamE-like Y89_5377 29e9aeb72580bab87f79aa6b82e9c86a 176 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 6 147 45.363 T 31-10-2018 IPR026592 Outer membrane protein assembly factor BamE Y89_6125 9dfe4dd834806c4f85da8d254b490c49 294 Pfam PF05853 beta-keto acid cleavage enzyme 5 291 5.0E-97 T 31-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 Y89_6125 9dfe4dd834806c4f85da8d254b490c49 294 Gene3D G3DSA:3.20.20.70 2 293 1.1E-103 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4837 17825e315b10e74abb66477bbeee6a56 286 SUPERFAMILY SSF52402 1 129 7.37E-31 T 31-10-2018 Y89_4837 17825e315b10e74abb66477bbeee6a56 286 Gene3D G3DSA:3.40.50.620 137 281 2.3E-24 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_4837 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 1 18 4.7E-12 T 31-10-2018 IPR006015 Universal stress protein A Y89_4837 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 92 104 4.7E-12 T 31-10-2018 IPR006015 Universal stress protein A Y89_4837 17825e315b10e74abb66477bbeee6a56 286 PRINTS PR01438 Universal stress protein signature 110 132 4.7E-12 T 31-10-2018 IPR006015 Universal stress protein A Y89_4837 17825e315b10e74abb66477bbeee6a56 286 Pfam PF00582 Universal stress protein family 1 129 1.5E-31 T 31-10-2018 IPR006016 UspA Y89_4837 17825e315b10e74abb66477bbeee6a56 286 Pfam PF00582 Universal stress protein family 139 282 5.3E-23 T 31-10-2018 IPR006016 UspA Y89_4837 17825e315b10e74abb66477bbeee6a56 286 SUPERFAMILY SSF52402 139 284 3.43E-25 T 31-10-2018 Y89_4837 17825e315b10e74abb66477bbeee6a56 286 Gene3D G3DSA:3.40.50.620 1 133 4.6E-30 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3450 4baac728f7955bd36bc0301be239b95b 425 SUPERFAMILY SSF56954 15 413 6.41E-66 T 31-10-2018 Y89_3450 4baac728f7955bd36bc0301be239b95b 425 Gene3D G3DSA:1.20.1600.10 34 420 4.2E-57 T 31-10-2018 Y89_3450 4baac728f7955bd36bc0301be239b95b 425 Pfam PF02321 Outer membrane efflux protein 245 401 1.3E-17 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_3450 4baac728f7955bd36bc0301be239b95b 425 Pfam PF02321 Outer membrane efflux protein 35 211 2.6E-22 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 SUPERFAMILY SSF56784 17 198 1.93E-15 T 31-10-2018 IPR036412 HAD-like superfamily Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 Gene3D G3DSA:3.40.50.1000 16 198 4.4E-26 T 31-10-2018 IPR023214 HAD superfamily Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 Gene3D G3DSA:1.20.1440.100 27 99 4.4E-26 T 31-10-2018 Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 Pfam PF12710 haloacid dehalogenase-like hydrolase 17 195 3.0E-24 T 31-10-2018 Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 16 197 2.9E-30 T 31-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Y89_6287 9cc2a01de9c89f60b8a8a53984c8e5ba 207 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 15 197 1.1E-38 T 31-10-2018 Y89_1995 166fff3888475aee85a92f6af93d4147 519 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 457 5.1E-29 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y89_1995 166fff3888475aee85a92f6af93d4147 519 Gene3D G3DSA:3.30.420.40 251 517 1.7E-60 T 31-10-2018 Y89_1995 166fff3888475aee85a92f6af93d4147 519 SUPERFAMILY SSF53067 258 500 8.03E-53 T 31-10-2018 Y89_1995 166fff3888475aee85a92f6af93d4147 519 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 254 8.6E-45 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y89_1995 166fff3888475aee85a92f6af93d4147 519 PIRSF PIRSF000538 4 513 2.0E-112 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_1995 166fff3888475aee85a92f6af93d4147 519 Gene3D G3DSA:3.30.420.40 2 250 2.0E-64 T 31-10-2018 Y89_1995 166fff3888475aee85a92f6af93d4147 519 SUPERFAMILY SSF53067 6 257 5.29E-57 T 31-10-2018 Y89_3038 b2cbfb3933f450b61134b2c1a9469dea 474 Pfam PF07044 Protein of unknown function (DUF1329) 97 469 6.1E-120 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_5259 95a5d2f1b9443dc1274e4fa85e61575f 182 SMART SM00972 118 179 1.7E-18 T 31-10-2018 IPR007893 Spore coat protein U Y89_5259 95a5d2f1b9443dc1274e4fa85e61575f 182 Pfam PF05229 Spore Coat Protein U domain 29 179 1.0E-32 T 31-10-2018 IPR007893 Spore coat protein U Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 PIRSF PIRSF500687 1 132 3.2E-64 T 31-10-2018 IPR027259 Predicted 3-demethylubiquinone-9 3-methyltransferase, bacterial Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 Gene3D G3DSA:3.30.720.110 73 132 2.7E-32 T 31-10-2018 Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 PIRSF PIRSF021700 1 132 3.1E-42 T 31-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 129 1.6E-32 T 31-10-2018 IPR028973 PhnB-like Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 SUPERFAMILY SSF54593 3 130 5.63E-40 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3991 1bede523fe05c5c9b38a1bb138b414ef 132 Gene3D G3DSA:3.30.720.100 7 72 1.4E-30 T 31-10-2018 Y89_3365 9a74df716d422e5ad94e4cc7b5291327 277 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 257 2.3E-80 T 31-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y89_3365 9a74df716d422e5ad94e4cc7b5291327 277 Pfam PF02673 Bacitracin resistance protein BacA 9 259 4.2E-85 T 31-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y89_3365 9a74df716d422e5ad94e4cc7b5291327 277 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 17.748 T 31-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Y89_5045 0b0f22b4457e926da839153699d001ff 141 SUPERFAMILY SSF55729 1 127 8.14E-22 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5045 0b0f22b4457e926da839153699d001ff 141 Gene3D G3DSA:3.40.630.30 1 137 2.3E-34 T 31-10-2018 Y89_5045 0b0f22b4457e926da839153699d001ff 141 Pfam PF00583 Acetyltransferase (GNAT) family 23 120 1.6E-11 T 31-10-2018 IPR000182 GNAT domain Y89_4841 fa33003cd96a8acebeaa6a9e92dd1b91 350 Gene3D G3DSA:3.20.20.70 1 350 5.1E-139 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4841 fa33003cd96a8acebeaa6a9e92dd1b91 350 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 328 6.3E-85 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_4841 fa33003cd96a8acebeaa6a9e92dd1b91 350 SUPERFAMILY SSF51395 1 349 4.64E-122 T 31-10-2018 Y89_4370 f16ad264929fb44f13738af369681b18 280 Pfam PF13276 HTH-like domain 36 88 9.5E-12 T 31-10-2018 IPR025948 HTH-like domain Y89_4370 f16ad264929fb44f13738af369681b18 280 Gene3D G3DSA:3.30.420.10 101 239 2.3E-21 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_4370 f16ad264929fb44f13738af369681b18 280 SUPERFAMILY SSF53098 98 261 2.4E-42 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4370 f16ad264929fb44f13738af369681b18 280 Pfam PF13683 Integrase core domain 188 253 1.0E-30 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_1383 1b68cd20fdb0522942807a6d2336e237 378 Gene3D G3DSA:3.40.50.2000 170 371 4.4E-6 T 31-10-2018 Y89_1383 1b68cd20fdb0522942807a6d2336e237 378 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 376 44.012 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Y89_1383 1b68cd20fdb0522942807a6d2336e237 378 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 374 8.7E-128 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Y89_1383 1b68cd20fdb0522942807a6d2336e237 378 Pfam PF02684 Lipid-A-disaccharide synthetase 7 360 2.8E-121 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Y89_1383 1b68cd20fdb0522942807a6d2336e237 378 SUPERFAMILY SSF53756 6 375 2.7E-38 T 31-10-2018 Y89_1753 fe695114ceaf9c1844bf9c6cb6090d54 103 SMART SM00530 49 103 1.0E-9 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_1753 fe695114ceaf9c1844bf9c6cb6090d54 103 Gene3D G3DSA:1.10.260.40 47 102 6.2E-13 T 31-10-2018 Y89_1753 fe695114ceaf9c1844bf9c6cb6090d54 103 Pfam PF01381 Helix-turn-helix 51 99 3.4E-13 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_1753 fe695114ceaf9c1844bf9c6cb6090d54 103 SUPERFAMILY SSF47413 49 98 9.12E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 SUPERFAMILY SSF101821 78 191 2.29E-11 T 31-10-2018 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 SUPERFAMILY SSF53187 7 352 3.71E-39 T 31-10-2018 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 Gene3D G3DSA:2.40.30.40 81 171 3.6E-50 T 31-10-2018 IPR023367 Peptidase M42, domain 2 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 Pfam PF05343 M42 glutamyl aminopeptidase 62 343 7.5E-39 T 31-10-2018 IPR008007 Peptidase M42 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 PIRSF PIRSF001123 2 357 4.0E-36 T 31-10-2018 IPR008007 Peptidase M42 Y89_3103 a72d206ad495c5ef4c300d719681b849 358 Gene3D G3DSA:3.40.630.10 11 348 3.6E-50 T 31-10-2018 Y89_6113 e40109707ce116d3eadc58e7a57dca53 534 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 511 6.4E-169 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_6113 e40109707ce116d3eadc58e7a57dca53 534 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 512 3.6E-148 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 202 394 1.4E-9 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 95 118 - T 31-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 194 216 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 151 177 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 9.4E-33 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 SUPERFAMILY SSF55961 171 451 1.81E-56 T 31-10-2018 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 Gene3D G3DSA:3.90.380.10 30 446 3.3E-97 T 31-10-2018 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 SUPERFAMILY SSF50022 21 165 3.01E-47 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 Pfam PF00355 Rieske [2Fe-2S] domain 52 136 1.4E-22 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 Gene3D G3DSA:2.102.10.10 52 176 3.3E-97 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_2680 25d2804551b2ad0b41e2649afa37f534 464 TIGRFAM TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit 15 452 7.2E-297 T 31-10-2018 IPR017638 Anthranilate 1,2-dioxygenase, large subunit KEGG: 00627+1.14.12.1|MetaCyc: PWY-2421|MetaCyc: PWY-5648|MetaCyc: PWY-6079 Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 SUPERFAMILY SSF51338 9 438 1.58E-25 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 Gene3D G3DSA:2.30.40.10 17 432 1.9E-176 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 Pfam PF01979 Amidohydrolase family 64 412 4.7E-69 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 SUPERFAMILY SSF51556 66 365 9.53E-95 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 9 439 39.448 T 31-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 Y89_1846 460f0a75027ba24b89c128bcfc7e82be 444 Gene3D G3DSA:3.20.20.140 67 357 1.9E-176 T 31-10-2018 Y89_1507 3609310dd6bca434afd108c2233c23fe 64 SUPERFAMILY SSF55008 2 61 1.57E-13 T 31-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Y89_1507 3609310dd6bca434afd108c2233c23fe 64 Gene3D G3DSA:3.30.70.100 2 62 4.1E-16 T 31-10-2018 Y89_1507 3609310dd6bca434afd108c2233c23fe 64 Pfam PF00403 Heavy-metal-associated domain 4 60 3.5E-9 T 31-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Y89_3269 487adfae259bae81c0fe32ad4275c706 207 Pfam PF11363 Protein of unknown function (DUF3164) 14 205 2.4E-60 T 31-10-2018 IPR021505 Bacteriophage B3, Orf6 Y89_2395 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 SUPERFAMILY SSF46785 5 146 3.37E-30 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2395 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 Pfam PF02082 Transcriptional regulator 4 85 3.4E-24 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type Y89_2395 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 Gene3D G3DSA:1.10.10.10 3 150 1.3E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2395 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 143 6.2E-30 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type Y89_2395 1f01c947dbd8e7298d1cccb8d4d4c3ed 174 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 51 69 - T 31-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site Y89_3402 b485dc1df9e43634c5391c4342010aac 48 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 10 44 2.7E-9 T 31-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Y89_4227 59732d81eddb7004764a85e7f176a1b7 250 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 12 246 56.31 T 31-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 Y89_4227 59732d81eddb7004764a85e7f176a1b7 250 Gene3D G3DSA:3.30.1600.10 28 169 5.2E-80 T 31-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Y89_4227 59732d81eddb7004764a85e7f176a1b7 250 SUPERFAMILY SSF52467 3 247 6.55E-83 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_4227 59732d81eddb7004764a85e7f176a1b7 250 Gene3D G3DSA:3.40.50.1220 11 243 5.2E-80 T 31-10-2018 Y89_4227 59732d81eddb7004764a85e7f176a1b7 250 Pfam PF02146 Sir2 family 19 199 2.7E-50 T 31-10-2018 IPR003000 Sirtuin family GO:0070403 Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 SUPERFAMILY SSF53335 95 330 1.03E-39 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 Gene3D G3DSA:1.10.10.10 1 88 1.3E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 Gene3D G3DSA:3.40.50.150 89 334 9.5E-66 T 31-10-2018 Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 Pfam PF00891 O-methyltransferase 100 316 1.2E-30 T 31-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 Pfam PF16864 Dimerisation domain 12 86 1.1E-6 T 31-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 SUPERFAMILY SSF46785 10 89 5.99E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0813 24b73a6436f94f486a8eabcbd4235c21 334 PIRSF PIRSF005739 1 332 2.0E-37 T 31-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 Y89_1836 078d9ac7ef084ef48ff7cf8bdacea85d 145 Gene3D G3DSA:3.90.79.10 8 144 4.4E-17 T 31-10-2018 Y89_1836 078d9ac7ef084ef48ff7cf8bdacea85d 145 SUPERFAMILY SSF55811 3 141 2.84E-20 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_1836 078d9ac7ef084ef48ff7cf8bdacea85d 145 Pfam PF00293 NUDIX domain 17 124 5.9E-12 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 272 288 8.3E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 257 272 8.3E-5 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 Gene3D G3DSA:1.10.10.60 239 294 8.9E-18 T 31-10-2018 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 Pfam PF12833 Helix-turn-helix domain 211 289 4.6E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 SUPERFAMILY SSF46689 241 289 3.37E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 SUPERFAMILY SSF46689 188 239 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 Gene3D G3DSA:1.10.10.60 176 238 2.8E-16 T 31-10-2018 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 SMART SM00342 205 288 1.3E-29 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2917 b3796686441ea8107594b8596ff04f3b 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_1643 5605432c01009b0de177a3866dff1899 346 Pfam PF00795 Carbon-nitrogen hydrolase 15 267 9.4E-54 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_1643 5605432c01009b0de177a3866dff1899 346 Hamap MF_01242 Aliphatic amidase [amiE]. 1 340 87.899 T 31-10-2018 IPR023719 Aliphatic amidase GO:0004040 KEGG: 00330+3.5.1.4|KEGG: 00360+3.5.1.4|KEGG: 00380+3.5.1.4|KEGG: 00627+3.5.1.4|KEGG: 00643+3.5.1.4|MetaCyc: PWY-3161|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 Y89_1643 5605432c01009b0de177a3866dff1899 346 Gene3D G3DSA:3.60.110.10 1 341 7.2E-162 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1643 5605432c01009b0de177a3866dff1899 346 SUPERFAMILY SSF56317 11 275 8.63E-57 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 Gene3D G3DSA:1.20.1250.20 7 405 1.3E-32 T 31-10-2018 Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 PRINTS PR01035 Tetracycline resistance protein signature 139 161 1.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 PRINTS PR01035 Tetracycline resistance protein signature 318 338 1.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 PRINTS PR01035 Tetracycline resistance protein signature 50 69 1.5E-5 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 Pfam PF07690 Major Facilitator Superfamily 17 271 5.8E-17 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0355 b265b58429242a72d76b5ac0a8e92c56 413 SUPERFAMILY SSF103473 12 401 3.27E-34 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2910 dd4071389dc3efa237f8d5cda3cb87f0 310 SUPERFAMILY SSF53613 3 305 1.11E-57 T 31-10-2018 IPR029056 Ribokinase-like Y89_2910 dd4071389dc3efa237f8d5cda3cb87f0 310 Gene3D G3DSA:3.40.1190.20 2 310 1.6E-66 T 31-10-2018 IPR029056 Ribokinase-like Y89_2910 dd4071389dc3efa237f8d5cda3cb87f0 310 Pfam PF00294 pfkB family carbohydrate kinase 4 304 2.6E-28 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 Gene3D G3DSA:3.40.50.1820 26 362 7.0E-137 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 PIRSF PIRSF000443 2 379 2.3E-132 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 Gene3D G3DSA:1.10.1740.110 187 293 7.0E-137 T 31-10-2018 Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 13 375 28.601 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 SUPERFAMILY SSF53474 13 375 9.76E-101 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 Pfam PF00561 alpha/beta hydrolase fold 51 360 1.3E-31 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0412 49d5076b27c73e65b1996471f8c543ca 379 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 21 370 1.1E-136 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Y89_6155 c9338df0d8326f2f057a116ce13a5b92 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 3 408 2.0E-234 T 31-10-2018 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6155 c9338df0d8326f2f057a116ce13a5b92 416 Gene3D G3DSA:3.50.50.60 34 390 1.1E-110 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6155 c9338df0d8326f2f057a116ce13a5b92 416 Pfam PF01266 FAD dependent oxidoreductase 34 380 2.1E-55 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Y89_6155 c9338df0d8326f2f057a116ce13a5b92 416 Gene3D G3DSA:3.30.9.10 115 346 1.1E-110 T 31-10-2018 Y89_6155 c9338df0d8326f2f057a116ce13a5b92 416 SUPERFAMILY SSF51905 33 403 2.1E-48 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_0097 077f7e6f91d94517e98280022aad4d18 169 SUPERFAMILY SSF160719 39 152 1.44E-9 T 31-10-2018 Y89_0097 077f7e6f91d94517e98280022aad4d18 169 Pfam PF04965 Gene 25-like lysozyme 39 141 1.4E-21 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Y89_0097 077f7e6f91d94517e98280022aad4d18 169 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 11 161 1.3E-27 T 31-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein Y89_3224 a0e0280684b8e364bb3c1381909ccda8 317 Pfam PF16220 Domain of unknown function (DUF4880) 11 50 4.2E-12 T 31-10-2018 IPR032623 FecR, N-terminal Y89_3224 a0e0280684b8e364bb3c1381909ccda8 317 Gene3D G3DSA:2.60.120.1440 112 232 6.6E-21 T 31-10-2018 Y89_3224 a0e0280684b8e364bb3c1381909ccda8 317 Pfam PF04773 FecR protein 114 205 2.6E-21 T 31-10-2018 IPR006860 FecR protein Y89_3224 a0e0280684b8e364bb3c1381909ccda8 317 PIRSF PIRSF018266 1 317 1.8E-84 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_3783 a89145b2963255e7c9ff9be5c6981b29 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3783 a89145b2963255e7c9ff9be5c6981b29 475 Gene3D G3DSA:1.20.210.10 2 475 2.5E-212 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3783 a89145b2963255e7c9ff9be5c6981b29 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 472 6.5E-226 T 31-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y89_3783 a89145b2963255e7c9ff9be5c6981b29 475 SUPERFAMILY SSF81442 9 468 9.55E-122 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3783 a89145b2963255e7c9ff9be5c6981b29 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 442 4.0E-112 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 PIRSF PIRSF002144 1 91 2.7E-31 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 31-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 SUPERFAMILY SSF54570 3 84 1.11E-34 T 31-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.717 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 Pfam PF00203 Ribosomal protein S19 3 83 6.0E-35 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 2.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 2.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 2.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 Gene3D G3DSA:3.30.860.10 1 91 3.4E-40 T 31-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0763 2469a8e8ac64f8ae89c6400722106914 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 8.3E-44 T 31-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y89_4877 2ebda5760d51f379d75082ec055790e0 244 Gene3D G3DSA:2.30.110.10 1 151 1.4E-50 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_4877 2ebda5760d51f379d75082ec055790e0 244 Pfam PF10615 Protein of unknown function (DUF2470) 162 230 2.0E-13 T 31-10-2018 IPR019595 Domain of unknown function DUF2470 Y89_4877 2ebda5760d51f379d75082ec055790e0 244 Gene3D G3DSA:3.20.180.10 152 244 1.2E-39 T 31-10-2018 IPR037119 Haem oxygenase HugZ-like superfamily Y89_4877 2ebda5760d51f379d75082ec055790e0 244 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 4 146 3.0E-14 T 31-10-2018 Y89_4877 2ebda5760d51f379d75082ec055790e0 244 SUPERFAMILY SSF50475 3 236 8.23E-57 T 31-10-2018 Y89_0312 bc8a64ba79ead4f6d1f42caab82e2f04 221 SUPERFAMILY SSF46689 11 82 1.59E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0312 bc8a64ba79ead4f6d1f42caab82e2f04 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 6.1E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0312 bc8a64ba79ead4f6d1f42caab82e2f04 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 6.1E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0312 bc8a64ba79ead4f6d1f42caab82e2f04 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 63 1.2E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0312 bc8a64ba79ead4f6d1f42caab82e2f04 221 Gene3D G3DSA:1.10.357.10 16 202 2.2E-28 T 31-10-2018 Y89_6158 7fffbac0136ff8fef594b3df5008f715 211 Gene3D G3DSA:3.30.70.1520 46 127 4.8E-56 T 31-10-2018 Y89_6158 7fffbac0136ff8fef594b3df5008f715 211 SUPERFAMILY SSF103025 84 209 4.91E-21 T 31-10-2018 Y89_6158 7fffbac0136ff8fef594b3df5008f715 211 Gene3D G3DSA:3.30.1360.120 39 205 4.8E-56 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Y89_6158 7fffbac0136ff8fef594b3df5008f715 211 TIGRFAM TIGR01375 soxG: sarcosine oxidase, gamma subunit family 52 204 8.2E-62 T 31-10-2018 IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_6158 7fffbac0136ff8fef594b3df5008f715 211 Pfam PF04268 Sarcosine oxidase, gamma subunit family 53 204 3.2E-59 T 31-10-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 Y89_1114 8abc87303b9da872950a6d20e7c5b41f 780 SUPERFAMILY SSF56219 453 769 1.43E-36 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_1114 8abc87303b9da872950a6d20e7c5b41f 780 Gene3D G3DSA:3.60.10.10 455 768 4.8E-35 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_1114 8abc87303b9da872950a6d20e7c5b41f 780 Pfam PF00932 Lamin Tail Domain 20 129 8.6E-16 T 31-10-2018 IPR001322 Lamin tail domain Y89_1114 8abc87303b9da872950a6d20e7c5b41f 780 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 458 761 5.0E-9 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_0239 624ed817f14cdeb5df6accf94e82eacc 133 Gene3D G3DSA:1.20.1290.10 4 125 2.0E-40 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0239 624ed817f14cdeb5df6accf94e82eacc 133 SUPERFAMILY SSF69118 4 127 2.64E-38 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0239 624ed817f14cdeb5df6accf94e82eacc 133 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 3 124 3.9E-59 T 31-10-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 Y89_0239 624ed817f14cdeb5df6accf94e82eacc 133 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 3.9E-24 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 Gene3D G3DSA:3.20.20.70 1 215 2.7E-74 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 43 52 - T 31-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 Pfam PF01081 KDPG and KHG aldolase 11 206 1.6E-79 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 SUPERFAMILY SSF51569 10 213 2.56E-67 T 31-10-2018 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 131 144 - T 31-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1835 7eaee7cc209bb0298f20d37119bafb8b 220 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 12 213 2.7E-86 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_4765 5a9bdfe394cb279688fd63c76ba247b5 409 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 257 2.7E-54 T 31-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 Y89_4765 5a9bdfe394cb279688fd63c76ba247b5 409 Gene3D G3DSA:3.60.21.10 1 280 2.3E-80 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_4765 5a9bdfe394cb279688fd63c76ba247b5 409 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 284 378 1.9E-15 T 31-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain Y89_4765 5a9bdfe394cb279688fd63c76ba247b5 409 SUPERFAMILY SSF56300 1 344 9.35E-56 T 31-10-2018 Y89_4765 5a9bdfe394cb279688fd63c76ba247b5 409 Pfam PF00149 Calcineurin-like phosphoesterase 1 231 2.2E-13 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_5127 f4af64dec5c5e03abab33bfab61397ad 983 SUPERFAMILY SSF52540 495 909 1.5E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5127 f4af64dec5c5e03abab33bfab61397ad 983 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 65 964 0.0 T 31-10-2018 IPR022303 Conjugative transfer ATPase Y89_5127 f4af64dec5c5e03abab33bfab61397ad 983 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 76 351 6.0E-68 T 31-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Y89_5671 335e79678065ca3e7812bed14513420b 310 Pfam PF00535 Glycosyl transferase family 2 29 196 1.7E-29 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_5671 335e79678065ca3e7812bed14513420b 310 Gene3D G3DSA:3.90.550.10 5 272 6.9E-56 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5671 335e79678065ca3e7812bed14513420b 310 SUPERFAMILY SSF53448 17 241 2.44E-56 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5804 eb1720b4281c0dc0824fccd07448b26a 272 Pfam PF02517 CAAX protease self-immunity 169 258 5.7E-19 T 31-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Y89_0124 e61a8966da5d119ca4e1d14a65f0e998 304 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 14 296 7.2E-106 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y89_0124 e61a8966da5d119ca4e1d14a65f0e998 304 Gene3D G3DSA:1.10.357.140 19 181 7.3E-21 T 31-10-2018 Y89_0124 e61a8966da5d119ca4e1d14a65f0e998 304 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 71 93 - T 31-10-2018 IPR030470 UbiA prenyltransferase conserved site Y89_0124 e61a8966da5d119ca4e1d14a65f0e998 304 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 12 297 19.81 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Y89_0124 e61a8966da5d119ca4e1d14a65f0e998 304 Pfam PF01040 UbiA prenyltransferase family 29 285 5.2E-60 T 31-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Y89_0989 bd27c34d276988fc4748b98e423aba7c 333 Gene3D G3DSA:2.60.120.1440 89 222 5.4E-6 T 31-10-2018 Y89_0989 bd27c34d276988fc4748b98e423aba7c 333 PIRSF PIRSF029644 1 333 5.5E-107 T 31-10-2018 IPR016930 Uncharacterised conserved protein UCP029644, LysM, PA4035 Y89_0989 bd27c34d276988fc4748b98e423aba7c 333 Pfam PF04773 FecR protein 90 184 1.7E-15 T 31-10-2018 IPR006860 FecR protein Y89_5862 91447185e555943c6029c2ce731afbca 188 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_5862 91447185e555943c6029c2ce731afbca 188 Gene3D G3DSA:3.90.79.10 5 187 3.2E-45 T 31-10-2018 Y89_5862 91447185e555943c6029c2ce731afbca 188 SUPERFAMILY SSF55811 5 179 3.11E-36 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5862 91447185e555943c6029c2ce731afbca 188 Pfam PF00293 NUDIX domain 48 164 1.5E-13 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_4673 f20f9559e3efd29671875963ab2edae6 956 SUPERFAMILY SSF52540 481 870 6.54E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4673 f20f9559e3efd29671875963ab2edae6 956 Gene3D G3DSA:3.40.50.300 710 900 3.9E-17 T 31-10-2018 Y89_4673 f20f9559e3efd29671875963ab2edae6 956 Gene3D G3DSA:3.40.50.300 507 703 6.7E-9 T 31-10-2018 Y89_4673 f20f9559e3efd29671875963ab2edae6 956 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 62 335 1.1E-72 T 31-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Y89_4673 f20f9559e3efd29671875963ab2edae6 956 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 51 946 0.0 T 31-10-2018 IPR022303 Conjugative transfer ATPase Y89_4296 da1d35e4cf272d78f085bc10d57d0136 89 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 82 1.2E-21 T 31-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Y89_4296 da1d35e4cf272d78f085bc10d57d0136 89 PIRSF PIRSF028784 1 89 2.5E-28 T 31-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Y89_2924 b4162c423ec42bdd80dc26db4756a6b1 355 SUPERFAMILY SSF56645 7 210 2.23E-30 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2924 b4162c423ec42bdd80dc26db4756a6b1 355 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 102 5.6E-7 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2924 b4162c423ec42bdd80dc26db4756a6b1 355 Gene3D G3DSA:2.40.110.10 116 215 1.3E-8 T 31-10-2018 Y89_2924 b4162c423ec42bdd80dc26db4756a6b1 355 Gene3D G3DSA:1.10.540.10 4 104 8.8E-13 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2529 31447145ae6037dcbe9ff2cfc75d999a 458 Gene3D G3DSA:3.90.1200.10 102 317 1.3E-20 T 31-10-2018 Y89_2529 31447145ae6037dcbe9ff2cfc75d999a 458 Pfam PF01636 Phosphotransferase enzyme family 67 255 1.4E-16 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_2529 31447145ae6037dcbe9ff2cfc75d999a 458 SUPERFAMILY SSF56112 14 266 9.14E-26 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 Gene3D G3DSA:3.30.300.30 406 501 5.8E-23 T 31-10-2018 Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 SUPERFAMILY SSF56801 12 524 1.18E-106 T 31-10-2018 Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 Gene3D G3DSA:3.40.50.12780 4 405 3.4E-139 T 31-10-2018 Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 Pfam PF00550 Phosphopantetheine attachment site 517 577 2.0E-5 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 Gene3D G3DSA:1.10.1200.10 509 590 2.2E-16 T 31-10-2018 IPR036736 ACP-like superfamily Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 ProSitePatterns PS00455 Putative AMP-binding domain signature. 155 166 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 SUPERFAMILY SSF47336 513 578 3.06E-7 T 31-10-2018 IPR036736 ACP-like superfamily Y89_4132 3cc7d6b4622e1e48a7f9fe481aa28fcf 606 Pfam PF00501 AMP-binding enzyme 21 410 1.2E-62 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_4731 214d34f2a63770461017aa27254e0009 301 Pfam PF04116 Fatty acid hydroxylase superfamily 111 244 4.1E-21 T 31-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y89_4112 2cb8de8e473040e708caad7795fa5dcc 294 Gene3D G3DSA:3.40.50.1820 14 292 4.3E-27 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4112 2cb8de8e473040e708caad7795fa5dcc 294 Pfam PF12146 Serine aminopeptidase, S33 46 125 1.0E-9 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_4112 2cb8de8e473040e708caad7795fa5dcc 294 PIRSF PIRSF037442 6 294 4.6E-94 T 31-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y89_4112 2cb8de8e473040e708caad7795fa5dcc 294 SUPERFAMILY SSF53474 9 290 1.88E-30 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 SMART SM00419 171 219 2.2E-14 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 Pfam PF13545 Crp-like helix-turn-helix domain 156 224 9.9E-16 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 SUPERFAMILY SSF46785 150 224 2.8E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 SMART SM00100 16 135 2.9E-25 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 Gene3D G3DSA:1.10.10.10 150 227 8.7E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 SUPERFAMILY SSF51206 9 150 4.45E-32 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 Gene3D G3DSA:2.60.120.10 1 149 4.3E-62 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0548 f08f293d87c1225f4cd3f3720158ebfb 227 Pfam PF00027 Cyclic nucleotide-binding domain 35 122 6.3E-18 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 SUPERFAMILY SSF46689 249 299 1.3E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 SMART SM00342 213 296 3.5E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 Gene3D G3DSA:1.10.10.60 192 300 8.4E-24 T 31-10-2018 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 250 292 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 280 9.6E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 296 9.6E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Y89_2541 5bab876a714a0a100c9d0852fde2e5d4 301 Pfam PF12833 Helix-turn-helix domain 219 298 2.4E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_0835 d490537d4193e94f9864aaa1358f7f06 442 Gene3D G3DSA:1.20.1250.20 14 441 1.6E-83 T 31-10-2018 Y89_0835 d490537d4193e94f9864aaa1358f7f06 442 ProSitePatterns PS00217 Sugar transport proteins signature 2. 116 141 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_0835 d490537d4193e94f9864aaa1358f7f06 442 Pfam PF00083 Sugar (and other) transporter 48 438 6.6E-52 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_0835 d490537d4193e94f9864aaa1358f7f06 442 SUPERFAMILY SSF103473 8 436 1.7E-72 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 TIGRFAM TIGR00749 glk: glucokinase 14 320 7.3E-76 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 Hamap MF_00524 Glucokinase [glk]. 12 326 32.194 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 Gene3D G3DSA:3.30.420.40 14 319 2.7E-92 T 31-10-2018 Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 SUPERFAMILY SSF53067 14 327 1.65E-52 T 31-10-2018 Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 Gene3D G3DSA:3.40.367.20 109 309 2.7E-92 T 31-10-2018 Y89_1823 4c0eeba137e6ccc8ca005953ffc0f2af 331 Pfam PF02685 Glucokinase 14 325 8.3E-106 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Y89_4484 4e45b86e8b7d862e94210634f9033e0c 731 Pfam PF04632 Fusaric acid resistance protein family 40 724 1.1E-209 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_6243 45f94421b1599785156c0c193397700a 335 SUPERFAMILY SSF55021 262 334 9.27E-17 T 31-10-2018 Y89_6243 45f94421b1599785156c0c193397700a 335 Pfam PF00005 ABC transporter 22 170 6.9E-36 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_6243 45f94421b1599785156c0c193397700a 335 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_6243 45f94421b1599785156c0c193397700a 335 Gene3D G3DSA:3.30.70.260 247 335 2.2E-15 T 31-10-2018 Y89_6243 45f94421b1599785156c0c193397700a 335 Pfam PF09383 NIL domain 264 333 5.2E-19 T 31-10-2018 IPR018449 NIL domain Y89_6243 45f94421b1599785156c0c193397700a 335 Gene3D G3DSA:3.40.50.300 1 246 8.2E-77 T 31-10-2018 Y89_6243 45f94421b1599785156c0c193397700a 335 SMART SM00930 261 334 8.6E-25 T 31-10-2018 IPR018449 NIL domain Y89_6243 45f94421b1599785156c0c193397700a 335 SUPERFAMILY SSF52540 1 241 6.81E-82 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6243 45f94421b1599785156c0c193397700a 335 SMART SM00382 30 219 2.7E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4054 76ce319d51829b147ab7d0c689264ee8 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 275 4.9E-42 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_4054 76ce319d51829b147ab7d0c689264ee8 310 Gene3D G3DSA:3.40.50.720 19 302 1.2E-87 T 31-10-2018 Y89_4054 76ce319d51829b147ab7d0c689264ee8 310 Gene3D G3DSA:3.40.50.720 95 279 1.2E-87 T 31-10-2018 Y89_4054 76ce319d51829b147ab7d0c689264ee8 310 SUPERFAMILY SSF51735 97 275 9.05E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0839 62d8850f288e78a4ec0a691bbf9ee82a 140 Gene3D G3DSA:3.10.180.10 19 137 3.5E-39 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_0839 62d8850f288e78a4ec0a691bbf9ee82a 140 SUPERFAMILY SSF54593 23 137 2.42E-14 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3830 6b0a395ae1f87e4792506e56bce8418d 86 Pfam PF05488 PAAR motif 7 76 2.1E-21 T 31-10-2018 IPR008727 PAAR motif Y89_3830 6b0a395ae1f87e4792506e56bce8418d 86 Gene3D G3DSA:2.60.200.60 15 82 6.9E-8 T 31-10-2018 Y89_1770 76f5f09aed02de3068fb05a54fd47f1c 271 Gene3D G3DSA:3.40.50.300 1 259 2.7E-71 T 31-10-2018 Y89_1770 76f5f09aed02de3068fb05a54fd47f1c 271 SUPERFAMILY SSF52540 2 268 6.11E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1770 76f5f09aed02de3068fb05a54fd47f1c 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 226 8.2E-20 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_1770 76f5f09aed02de3068fb05a54fd47f1c 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 1.3E-115 T 31-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Y89_1770 76f5f09aed02de3068fb05a54fd47f1c 271 PIRSF PIRSF003092 1 271 1.1E-91 T 31-10-2018 IPR025501 ATP binding protein MinD Y89_1229 1d93978e50bdb36642654248c6d82d32 264 SUPERFAMILY SSF56317 6 258 4.06E-65 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1229 1d93978e50bdb36642654248c6d82d32 264 Pfam PF00795 Carbon-nitrogen hydrolase 12 248 4.5E-31 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_1229 1d93978e50bdb36642654248c6d82d32 264 Gene3D G3DSA:3.60.110.10 7 264 4.9E-87 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_6234 f46ab47ac7bf29bf4033db4061a33638 96 Gene3D G3DSA:2.20.130.30 22 96 3.2E-35 T 31-10-2018 Y89_6234 f46ab47ac7bf29bf4033db4061a33638 96 Pfam PF11191 Protein of unknown function (DUF2782) 22 96 7.4E-24 T 31-10-2018 IPR021357 Protein of unknown function DUF2782 Y89_3738 46ce90fd53d1c93aea1437297ab117cc 241 Pfam PF01738 Dienelactone hydrolase family 29 239 2.5E-41 T 31-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y89_3738 46ce90fd53d1c93aea1437297ab117cc 241 Gene3D G3DSA:3.40.50.1820 1 241 8.3E-52 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3738 46ce90fd53d1c93aea1437297ab117cc 241 SUPERFAMILY SSF53474 6 238 4.4E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3657 a60b7d1ae3f69c9e5beb2e016f57a3f7 198 SUPERFAMILY SSF52499 2 191 9.68E-44 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_3657 a60b7d1ae3f69c9e5beb2e016f57a3f7 198 Gene3D G3DSA:3.40.50.850 3 195 2.7E-48 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_3657 a60b7d1ae3f69c9e5beb2e016f57a3f7 198 Pfam PF00857 Isochorismatase family 23 193 4.4E-35 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_4160 7839cc5996764f382469e19b37e4a11a 223 SUPERFAMILY SSF48150 37 182 2.12E-39 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Y89_4160 7839cc5996764f382469e19b37e4a11a 223 Gene3D G3DSA:1.10.340.30 34 149 8.6E-23 T 31-10-2018 Y89_4160 7839cc5996764f382469e19b37e4a11a 223 Pfam PF03352 Methyladenine glycosylase 39 132 2.9E-18 T 31-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 SUPERFAMILY SSF52768 4 313 3.6E-100 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 Pfam PF00491 Arginase family 39 310 5.6E-89 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 PIRSF PIRSF036979 15 316 1.3E-102 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 ProSitePatterns PS01053 Arginase family signature. 241 262 - T 31-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 TIGRFAM TIGR01230 agmatinase: agmatinase 34 311 1.7E-63 T 31-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 Gene3D G3DSA:3.40.800.10 1 319 2.0E-134 T 31-10-2018 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 PRINTS PR00116 Arginase signature 238 267 2.2E-13 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_3928 4b4b9d42c55b70c7189458d818b84543 319 PRINTS PR00116 Arginase signature 125 140 2.2E-13 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_0483 2daf6e8a8f63856b99a217131d6668c0 169 Gene3D G3DSA:2.40.70.10 20 156 9.1E-42 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_0483 2daf6e8a8f63856b99a217131d6668c0 169 Pfam PF05618 Putative ATP-dependant zinc protease 23 166 1.8E-54 T 31-10-2018 Y89_0483 2daf6e8a8f63856b99a217131d6668c0 169 SUPERFAMILY SSF50630 22 163 5.62E-40 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_0240 b3423078fe83366fff10137868cd0ecd 313 SUPERFAMILY SSF53850 96 301 3.58E-36 T 31-10-2018 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 Pfam PF03466 LysR substrate binding domain 94 300 1.0E-38 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0240 b3423078fe83366fff10137868cd0ecd 313 SUPERFAMILY SSF46785 5 116 5.99E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0240 b3423078fe83366fff10137868cd0ecd 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.6E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.6E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.6E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 Gene3D G3DSA:3.40.190.290 96 308 2.2E-32 T 31-10-2018 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 4.6E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0240 b3423078fe83366fff10137868cd0ecd 313 Gene3D G3DSA:1.10.10.10 7 94 2.8E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2566 8caeab56e4edd3eaa1f7dde2a0c2aef6 391 Gene3D G3DSA:1.20.1250.20 12 389 1.4E-35 T 31-10-2018 Y89_2566 8caeab56e4edd3eaa1f7dde2a0c2aef6 391 Pfam PF07690 Major Facilitator Superfamily 18 273 4.6E-18 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2566 8caeab56e4edd3eaa1f7dde2a0c2aef6 391 Hamap MF_01118 Uncharacterized MFS-type transporter YhhS [yhhS]. 6 391 38.739 T 31-10-2018 IPR023008 Uncharacterized MFS-type transporter YhhS-like Y89_2566 8caeab56e4edd3eaa1f7dde2a0c2aef6 391 SUPERFAMILY SSF103473 14 389 1.12E-46 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_6190 b2eaeb1407db3dd5ee7587cef8700882 460 SUPERFAMILY SSF53756 14 411 4.93E-41 T 31-10-2018 Y89_6190 b2eaeb1407db3dd5ee7587cef8700882 460 Pfam PF00534 Glycosyl transferases group 1 268 415 2.6E-21 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_6190 b2eaeb1407db3dd5ee7587cef8700882 460 Gene3D G3DSA:3.40.50.2000 263 414 7.9E-27 T 31-10-2018 Y89_2613 9ce38a4764219eb8adfd336d7f19ab0b 382 Pfam PF00487 Fatty acid desaturase 114 329 1.3E-27 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_1813 299cb11e9fbae1bb6567a876267edb2a 99 SUPERFAMILY SSF54909 1 97 2.15E-30 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_1813 299cb11e9fbae1bb6567a876267edb2a 99 Gene3D G3DSA:3.30.70.1060 1 98 9.1E-36 T 31-10-2018 Y89_1813 299cb11e9fbae1bb6567a876267edb2a 99 Pfam PF03795 YCII-related domain 1 95 5.3E-30 T 31-10-2018 IPR005545 YCII-related Y89_5302 fd33fb31409fbd121a8ad9bb0881d5f6 218 Pfam PF04403 Paraquat-inducible protein A 57 208 3.2E-48 T 31-10-2018 IPR007498 Intermembrane transport protein PqiA-like Y89_6353 cf72d38dcad8594211dfa07fb4230129 569 Pfam PF00263 Bacterial type II and III secretion system protein 401 567 9.5E-14 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_6353 cf72d38dcad8594211dfa07fb4230129 569 Pfam PF07655 Secretin N-terminal domain 213 300 1.2E-12 T 31-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 Y89_6353 cf72d38dcad8594211dfa07fb4230129 569 TIGRFAM TIGR02520 pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family 57 567 1.9E-160 T 31-10-2018 IPR013359 Pilus formation type IVB, outer membrane PilN Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 SUPERFAMILY SSF52402 2 138 6.98E-30 T 31-10-2018 Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 Gene3D G3DSA:3.40.50.620 1 141 9.4E-30 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 PRINTS PR01438 Universal stress protein signature 2 20 3.2E-10 T 31-10-2018 IPR006015 Universal stress protein A Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 PRINTS PR01438 Universal stress protein signature 100 112 3.2E-10 T 31-10-2018 IPR006015 Universal stress protein A Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 PRINTS PR01438 Universal stress protein signature 118 140 3.2E-10 T 31-10-2018 IPR006015 Universal stress protein A Y89_2188 b4531f544655e4322b47f1bc6b019fa2 148 Pfam PF00582 Universal stress protein family 1 138 4.5E-29 T 31-10-2018 IPR006016 UspA Y89_2464 71a2429c8b4e4074f3b5601197dc4c18 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y89_2464 71a2429c8b4e4074f3b5601197dc4c18 741 SUPERFAMILY SSF53659 5 740 0.0 T 31-10-2018 Y89_2464 71a2429c8b4e4074f3b5601197dc4c18 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 740 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y89_2464 71a2429c8b4e4074f3b5601197dc4c18 741 PIRSF PIRSF009407 1 741 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y89_1662 7a28c329edb76ede37550490455628e2 101 Gene3D G3DSA:3.30.750.24 8 101 9.4E-20 T 31-10-2018 IPR036513 STAS domain superfamily Y89_1662 7a28c329edb76ede37550490455628e2 101 Pfam PF13466 STAS domain 16 94 2.3E-14 T 31-10-2018 IPR002645 STAS domain Y89_1662 7a28c329edb76ede37550490455628e2 101 SUPERFAMILY SSF52091 10 100 1.08E-21 T 31-10-2018 IPR036513 STAS domain superfamily Y89_4528 d7e5376c991652b143860ba5d20f75db 213 SMART SM00849 18 195 3.6E-34 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4528 d7e5376c991652b143860ba5d20f75db 213 Gene3D G3DSA:3.60.15.10 8 213 1.1E-60 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4528 d7e5376c991652b143860ba5d20f75db 213 SUPERFAMILY SSF56281 8 212 9.8E-52 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4528 d7e5376c991652b143860ba5d20f75db 213 Pfam PF00753 Metallo-beta-lactamase superfamily 15 195 1.0E-29 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 Gene3D G3DSA:1.25.40.10 28 461 8.2E-107 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 SMART SM00671 310 344 0.018 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 SMART SM00671 381 416 3.3 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 SMART SM00671 345 380 1.7E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 SMART SM00671 62 96 23.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1484 3c5242240c5b127f03237e28243b1c0a 475 SUPERFAMILY SSF81901 256 449 9.59E-19 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 1.9E-7 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 72 94 1.9E-7 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 395 414 1.9E-7 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 PRINTS PR01036 Tetracycline resistance protein TetB signature 298 322 1.9E-7 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 Pfam PF07690 Major Facilitator Superfamily 15 404 3.2E-48 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 Gene3D G3DSA:1.20.1720.10 9 215 4.2E-39 T 31-10-2018 Y89_4068 f714ae815b3af3ae234d5af123f37918 501 SUPERFAMILY SSF103473 3 488 1.7E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4068 f714ae815b3af3ae234d5af123f37918 501 Gene3D G3DSA:1.20.1250.20 262 493 2.2E-19 T 31-10-2018 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 SMART SM00448 7 117 1.1E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 Gene3D G3DSA:3.40.50.2300 5 119 3.9E-32 T 31-10-2018 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 SUPERFAMILY SSF46894 129 229 6.52E-27 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 SUPERFAMILY SSF52172 8 131 4.13E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 SMART SM00862 152 228 9.4E-23 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 Gene3D G3DSA:1.10.10.10 120 234 1.8E-35 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 228 5.7E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3530 d2ff56a09eb1c8fd0db373b8abe17188 235 Pfam PF00072 Response regulator receiver domain 9 117 3.1E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 7.5E-5 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 7.5E-5 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 7.5E-5 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 Gene3D G3DSA:1.10.10.10 6 94 6.0E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 SUPERFAMILY SSF46785 9 86 5.45E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 SMART SM00418 9 88 1.6E-11 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Y89_0297 4b5241c61cbae25189abf0d4a39eb0f9 232 Pfam PF12840 Helix-turn-helix domain 10 68 1.4E-7 T 31-10-2018 Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 PIRSF PIRSF004848 1 228 3.1E-70 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 Gene3D G3DSA:3.20.20.10 1 227 1.6E-86 T 31-10-2018 IPR029066 PLP-binding barrel Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 222 34.139 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 SUPERFAMILY SSF51419 1 221 1.57E-81 T 31-10-2018 IPR029066 PLP-binding barrel Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 Pfam PF01168 Alanine racemase, N-terminal domain 9 223 4.3E-34 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 223 2.1E-74 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Y89_0417 2239967f08b2775c8a97ca07e3cfe807 230 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 Pfam PF12795 Mechanosensitive ion channel porin domain 38 273 8.9E-56 T 31-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain Y89_5694 5f762552f67b6e55330764c341997bcb 1118 SUPERFAMILY SSF82861 830 914 2.22E-7 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 SUPERFAMILY SSF50182 916 981 4.58E-17 T 31-10-2018 IPR010920 LSM domain superfamily Y89_5694 5f762552f67b6e55330764c341997bcb 1118 Pfam PF00924 Mechanosensitive ion channel 873 1071 1.4E-51 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 945 979 - T 31-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 SUPERFAMILY SSF82689 983 1083 3.79E-21 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 493 812 1.8E-105 T 31-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Y89_5694 5f762552f67b6e55330764c341997bcb 1118 Gene3D G3DSA:2.30.30.60 931 980 1.1E-13 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Y89_5694 5f762552f67b6e55330764c341997bcb 1118 Gene3D G3DSA:3.30.70.100 984 1077 1.7E-16 T 31-10-2018 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-11 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 SUPERFAMILY SSF46785 1 85 1.25E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 Pfam PF03466 LysR substrate binding domain 87 293 3.9E-37 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 Gene3D G3DSA:1.10.10.10 1 85 4.7E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.8E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 Gene3D G3DSA:3.40.190.10 89 287 8.0E-36 T 31-10-2018 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 Gene3D G3DSA:3.40.190.10 162 268 8.0E-36 T 31-10-2018 Y89_4716 2989994036a38af7939a12b7d05fa7cf 296 SUPERFAMILY SSF53850 88 294 5.12E-36 T 31-10-2018 Y89_1194 b905eda19b1950ffff1d7f59eb319847 142 SUPERFAMILY SSF102400 2 139 2.48E-42 T 31-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Y89_1194 b905eda19b1950ffff1d7f59eb319847 142 Pfam PF04364 DNA polymerase III chi subunit, HolC 2 135 6.0E-38 T 31-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Y89_1194 b905eda19b1950ffff1d7f59eb319847 142 Gene3D G3DSA:3.40.50.10110 1 139 1.9E-46 T 31-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 100 192 1.2E-12 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 Gene3D G3DSA:4.10.860.20 196 242 2.5E-23 T 31-10-2018 Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 SMART SM00702 16 193 1.6E-36 T 31-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 17 242 45.983 T 31-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 SUPERFAMILY SSF51197 19 191 2.01E-6 T 31-10-2018 Y89_5001 1a226f080962cbda0454f0173c5f35d6 242 Gene3D G3DSA:2.60.120.620 8 194 6.2E-43 T 31-10-2018 Y89_4286 a006387e7897718d61aba0633253e820 613 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 149 1.1E-8 T 31-10-2018 Y89_4286 a006387e7897718d61aba0633253e820 613 PIRSF PIRSF002583 2 608 3.7E-97 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Y89_4286 a006387e7897718d61aba0633253e820 613 Gene3D G3DSA:3.30.565.10 15 208 2.6E-41 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4286 a006387e7897718d61aba0633253e820 613 Pfam PF00183 Hsp90 protein 277 354 1.5E-8 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Y89_4286 a006387e7897718d61aba0633253e820 613 PRINTS PR00775 90kDa heat shock protein signature 33 55 2.0E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_4286 a006387e7897718d61aba0633253e820 613 PRINTS PR00775 90kDa heat shock protein signature 186 204 2.0E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_4286 a006387e7897718d61aba0633253e820 613 PRINTS PR00775 90kDa heat shock protein signature 117 139 2.0E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_4286 a006387e7897718d61aba0633253e820 613 PRINTS PR00775 90kDa heat shock protein signature 168 185 2.0E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Y89_4286 a006387e7897718d61aba0633253e820 613 SUPERFAMILY SSF55874 13 209 9.87E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4286 a006387e7897718d61aba0633253e820 613 SUPERFAMILY SSF54211 233 456 1.06E-28 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_4286 a006387e7897718d61aba0633253e820 613 Gene3D G3DSA:3.30.230.80 235 378 4.0E-13 T 31-10-2018 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 1.1E-181 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 59.203 T 31-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 Gene3D G3DSA:3.40.309.10 255 486 6.7E-82 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 4.1E-228 T 31-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 SUPERFAMILY SSF53720 5 483 3.53E-178 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Y89_6111 f2f7323576921e606ff078d3624b9e8c 490 Gene3D G3DSA:3.40.605.10 2 254 4.1E-110 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_6089 e3804477997e34626629aecd705085ad 55 Gene3D G3DSA:2.20.28.10 1 55 4.9E-29 T 31-10-2018 Y89_6089 e3804477997e34626629aecd705085ad 55 SUPERFAMILY SSF57802 1 53 6.73E-23 T 31-10-2018 Y89_6089 e3804477997e34626629aecd705085ad 55 Pfam PF00301 Rubredoxin 3 49 2.7E-23 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_6089 e3804477997e34626629aecd705085ad 55 PIRSF PIRSF000071 1 55 6.7E-25 T 31-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Y89_6089 e3804477997e34626629aecd705085ad 55 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 31-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Y89_6089 e3804477997e34626629aecd705085ad 55 PRINTS PR00163 Rubredoxin signature 3 19 5.7E-9 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_6089 e3804477997e34626629aecd705085ad 55 PRINTS PR00163 Rubredoxin signature 33 49 5.7E-9 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_3616 e955c069a1ae337f3290f023d7d8891a 432 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 164 415 1.2E-94 T 31-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain Y89_3616 e955c069a1ae337f3290f023d7d8891a 432 Gene3D G3DSA:2.60.200.20 1 123 3.9E-15 T 31-10-2018 Y89_3616 e955c069a1ae337f3290f023d7d8891a 432 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 3 415 1.1E-78 T 31-10-2018 IPR012843 Type III secretion system YscD/HrpQ Y89_3616 e955c069a1ae337f3290f023d7d8891a 432 Gene3D G3DSA:3.30.70.1770 287 349 8.8E-30 T 31-10-2018 Y89_3616 e955c069a1ae337f3290f023d7d8891a 432 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 6 98 6.1E-20 T 31-10-2018 IPR032030 YscD, cytoplasmic domain Y89_5873 9f8a54cc61f28f635819d32d9c0f2738 354 Gene3D G3DSA:1.20.1090.10 153 354 4.3E-66 T 31-10-2018 Y89_5873 9f8a54cc61f28f635819d32d9c0f2738 354 Gene3D G3DSA:3.40.50.1970 1 152 2.0E-42 T 31-10-2018 Y89_5873 9f8a54cc61f28f635819d32d9c0f2738 354 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 141 169 - T 31-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y89_5873 9f8a54cc61f28f635819d32d9c0f2738 354 SUPERFAMILY SSF56796 1 354 4.45E-109 T 31-10-2018 Y89_5873 9f8a54cc61f28f635819d32d9c0f2738 354 Pfam PF00465 Iron-containing alcohol dehydrogenase 1 345 1.5E-109 T 31-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 SUPERFAMILY SSF50129 4 187 2.6E-64 T 31-10-2018 IPR011032 GroES-like superfamily Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 144 1.7E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 Pfam PF00107 Zinc-binding dehydrogenase 197 265 2.3E-9 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 SUPERFAMILY SSF51735 162 356 1.49E-66 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 TIGRFAM TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent 2 395 6.9E-229 T 31-10-2018 IPR014184 Formaldehyde dehydrogenase, glutathione-independent GO:0016491|GO:0055114 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 Gene3D G3DSA:3.40.50.720 178 344 1.2E-148 T 31-10-2018 Y89_6160 c7f9863475490f33f9b117bbffa7a3b0 399 Gene3D G3DSA:3.90.180.10 11 381 1.2E-148 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Gene3D G3DSA:2.40.50.100 67 130 1.5E-5 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Pfam PF13533 Biotin-lipoyl like 67 109 3.3E-6 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Gene3D G3DSA:1.10.287.470 158 248 1.3E-14 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Gene3D G3DSA:2.40.50.100 249 285 1.3E-14 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Gene3D G3DSA:2.40.30.170 286 371 1.3E-14 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 Pfam PF13437 HlyD family secretion protein 249 356 6.0E-17 T 31-10-2018 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 379 395 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 34 57 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 294 318 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 379 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 318 341 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_3448 9c8cdcb68665b282a451c0f3b3f6d25d 395 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 261 282 8.6E-40 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Y89_0494 918fe243ba07b03a578512f25f0e7159 249 Gene3D G3DSA:1.20.1050.10 82 200 1.6E-47 T 31-10-2018 Y89_0494 918fe243ba07b03a578512f25f0e7159 249 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 80 9.4E-21 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_0494 918fe243ba07b03a578512f25f0e7159 249 Gene3D G3DSA:3.40.30.10 10 204 1.6E-47 T 31-10-2018 Y89_0494 918fe243ba07b03a578512f25f0e7159 249 SUPERFAMILY SSF52833 5 104 1.06E-23 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0494 918fe243ba07b03a578512f25f0e7159 249 SUPERFAMILY SSF47616 78 205 1.19E-16 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 Gene3D G3DSA:3.40.50.1820 2 231 1.3E-52 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 Pfam PF01738 Dienelactone hydrolase family 16 230 9.7E-47 T 31-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 Gene3D G3DSA:3.10.450.50 239 376 5.2E-23 T 31-10-2018 Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 SUPERFAMILY SSF54427 238 376 8.77E-23 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 Pfam PF12680 SnoaL-like domain 249 357 5.3E-7 T 31-10-2018 IPR037401 SnoaL-like domain Y89_2405 de8fc6fa779fd60b1c9697cad10e4f0a 377 SUPERFAMILY SSF53474 2 230 1.89E-41 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4498 bff86f9741bddefcff82d5a16e87ed99 260 SUPERFAMILY SSF48613 19 243 1.24E-44 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_4498 bff86f9741bddefcff82d5a16e87ed99 260 Gene3D G3DSA:1.20.910.10 1 259 8.0E-101 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_4498 bff86f9741bddefcff82d5a16e87ed99 260 Pfam PF14518 Iron-containing redox enzyme 56 232 3.1E-14 T 31-10-2018 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:3.40.640.10 144 362 6.4E-99 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 69 3.3E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:3.90.1150.10 97 465 6.4E-99 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 SUPERFAMILY SSF53383 94 465 1.53E-89 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 Pfam PF00155 Aminotransferase class I and II 137 450 1.7E-28 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 Gene3D G3DSA:1.10.10.10 3 71 4.4E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 SMART SM00345 10 69 4.6E-22 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_2125 3c206f778e0dccbe6a3bb60e66eb0233 479 SUPERFAMILY SSF46785 4 73 1.16E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 SUPERFAMILY SSF75471 1 96 9.55E-28 T 31-10-2018 IPR035920 YhbY-like superfamily Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 2.7E-18 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 2.4E-23 T 31-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 Gene3D G3DSA:3.30.110.60 1 101 3.9E-31 T 31-10-2018 IPR035920 YhbY-like superfamily Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 93 2.0E-41 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y89_5365 e6b8616b2d5c6e134a441db2369a2381 104 SMART SM01103 3 86 1.6E-38 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 SUPERFAMILY SSF51735 4 228 3.51E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.9E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.9E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.9E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 Pfam PF00106 short chain dehydrogenase 5 194 6.8E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0128 caac0153f1c4d04aa2f29a8bbeaad2c5 242 Gene3D G3DSA:3.40.50.720 1 242 7.5E-53 T 31-10-2018 Y89_2577 dd28d3a391c66fcb895b427996600fd8 396 Gene3D G3DSA:3.40.47.10 5 395 2.2E-87 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2577 dd28d3a391c66fcb895b427996600fd8 396 SUPERFAMILY SSF53901 3 393 4.12E-19 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2577 dd28d3a391c66fcb895b427996600fd8 396 PIRSF PIRSF000429 4 396 5.3E-19 T 31-10-2018 IPR002155 Thiolase GO:0016747 Y89_4084 ff2d55e972bac8f67e2fa066a5f06cb5 78 Gene3D G3DSA:3.10.20.440 1 78 7.3E-8 T 31-10-2018 Y89_4084 ff2d55e972bac8f67e2fa066a5f06cb5 78 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 77 1.3E-16 T 31-10-2018 Y89_4084 ff2d55e972bac8f67e2fa066a5f06cb5 78 SUPERFAMILY SSF54292 1 77 1.31E-15 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_0999 cb47c1f35fc7a78d7b0b93de085ee1ab 273 Gene3D G3DSA:1.10.30.40 10 57 2.2E-7 T 31-10-2018 Y89_0999 cb47c1f35fc7a78d7b0b93de085ee1ab 273 PIRSF PIRSF018982 1 261 8.3E-107 T 31-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y89_0999 cb47c1f35fc7a78d7b0b93de085ee1ab 273 Gene3D G3DSA:3.40.50.11240 68 249 1.3E-66 T 31-10-2018 Y89_0999 cb47c1f35fc7a78d7b0b93de085ee1ab 273 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 13 250 1.5E-94 T 31-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y89_0999 cb47c1f35fc7a78d7b0b93de085ee1ab 273 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 5 250 39.996 T 31-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 8 725 2.8E-273 T 31-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 Gene3D G3DSA:3.40.720.10 42 200 9.3E-32 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 Gene3D G3DSA:3.40.720.10 301 485 1.5E-42 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 Pfam PF04185 Phosphoesterase family 51 436 6.6E-125 T 31-10-2018 IPR007312 Phosphoesterase GO:0016788 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 Pfam PF05506 Domain of unknown function (DUF756) 629 712 1.2E-17 T 31-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_4516 b0506704d13b7efae9855baaf5cab9de 730 Pfam PF05506 Domain of unknown function (DUF756) 512 619 1.5E-14 T 31-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 Gene3D G3DSA:3.40.190.10 31 333 2.8E-147 T 31-10-2018 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 Gene3D G3DSA:3.40.190.10 134 362 2.8E-147 T 31-10-2018 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 Pfam PF13416 Bacterial extracellular solute-binding protein 44 331 8.2E-33 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 SUPERFAMILY SSF53850 28 366 1.7E-105 T 31-10-2018 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 3.3E-69 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_0318 ec5e8fc96601812bc889c6b5bc9a69d3 367 PIRSF PIRSF019574 1 367 1.4E-143 T 31-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Y89_3440 98fc0652fdb77c1bc11f91bdddf059df 177 Pfam PF00583 Acetyltransferase (GNAT) family 59 146 8.9E-12 T 31-10-2018 IPR000182 GNAT domain Y89_3440 98fc0652fdb77c1bc11f91bdddf059df 177 SUPERFAMILY SSF55729 5 173 3.38E-28 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3440 98fc0652fdb77c1bc11f91bdddf059df 177 Gene3D G3DSA:3.40.630.30 2 176 3.5E-49 T 31-10-2018 Y89_3518 165d41e9c6f90c3ea20d2a5534db607e 609 Gene3D G3DSA:3.10.105.10 318 576 4.7E-237 T 31-10-2018 Y89_3518 165d41e9c6f90c3ea20d2a5534db607e 609 Gene3D G3DSA:3.40.190.10 25 601 4.7E-237 T 31-10-2018 Y89_3518 165d41e9c6f90c3ea20d2a5534db607e 609 PIRSF PIRSF002741 1 606 4.5E-98 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_3518 165d41e9c6f90c3ea20d2a5534db607e 609 SUPERFAMILY SSF53850 48 603 3.26E-115 T 31-10-2018 Y89_3518 165d41e9c6f90c3ea20d2a5534db607e 609 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 113 517 2.6E-68 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_2210 04c10efc0ad412cb87e847cf02269d9b 197 SUPERFAMILY SSF88946 13 100 9.02E-5 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_2210 04c10efc0ad412cb87e847cf02269d9b 197 Pfam PF08281 Sigma-70, region 4 126 178 4.0E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_2210 04c10efc0ad412cb87e847cf02269d9b 197 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 178 5.7E-16 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_2210 04c10efc0ad412cb87e847cf02269d9b 197 Gene3D G3DSA:1.10.10.10 103 183 9.2E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2210 04c10efc0ad412cb87e847cf02269d9b 197 SUPERFAMILY SSF88659 104 178 1.26E-11 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_0644 0c26454ee961128c051ba9228cf7f896 79 SMART SM00530 6 64 4.0E-5 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0644 0c26454ee961128c051ba9228cf7f896 79 Pfam PF01381 Helix-turn-helix 7 52 3.9E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0644 0c26454ee961128c051ba9228cf7f896 79 SUPERFAMILY SSF47413 1 55 1.87E-9 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0644 0c26454ee961128c051ba9228cf7f896 79 Gene3D G3DSA:1.10.260.40 1 79 1.6E-27 T 31-10-2018 Y89_3227 99549a156a82df9a2199102c3b0776a2 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 11 80 5.6E-13 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_3227 99549a156a82df9a2199102c3b0776a2 98 SUPERFAMILY SSF54909 10 89 1.86E-13 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3227 99549a156a82df9a2199102c3b0776a2 98 Gene3D G3DSA:3.30.70.100 5 95 5.6E-12 T 31-10-2018 Y89_3116 842c611b5d01efbc2ca4739831240431 716 SMART SM00642 190 578 4.4E-6 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3116 842c611b5d01efbc2ca4739831240431 716 SUPERFAMILY SSF51445 149 587 2.65E-131 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_3116 842c611b5d01efbc2ca4739831240431 716 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 19 107 5.3E-20 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Y89_3116 842c611b5d01efbc2ca4739831240431 716 Gene3D G3DSA:2.60.40.10 6 150 6.2E-53 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_3116 842c611b5d01efbc2ca4739831240431 716 Pfam PF00128 Alpha amylase, catalytic domain 200 288 2.2E-8 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Y89_3116 842c611b5d01efbc2ca4739831240431 716 Gene3D G3DSA:2.60.40.1180 598 705 3.6E-18 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta Y89_3116 842c611b5d01efbc2ca4739831240431 716 SUPERFAMILY SSF51011 598 706 3.45E-27 T 31-10-2018 Y89_3116 842c611b5d01efbc2ca4739831240431 716 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 15 706 0.0 T 31-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 Y89_3116 842c611b5d01efbc2ca4739831240431 716 SUPERFAMILY SSF81296 15 158 1.4E-49 T 31-10-2018 IPR014756 Immunoglobulin E-set Y89_3116 842c611b5d01efbc2ca4739831240431 716 Gene3D G3DSA:3.20.20.80 151 592 7.6E-172 T 31-10-2018 Y89_1203 952db357ac5d79caf117c56c9102f129 375 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 367 1.1E-158 T 31-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_1203 952db357ac5d79caf117c56c9102f129 375 Pfam PF01702 Queuine tRNA-ribosyltransferase 129 362 5.8E-90 T 31-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_1203 952db357ac5d79caf117c56c9102f129 375 Gene3D G3DSA:3.20.20.105 1 368 5.9E-165 T 31-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_1203 952db357ac5d79caf117c56c9102f129 375 SUPERFAMILY SSF51713 2 365 7.59E-161 T 31-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_1203 952db357ac5d79caf117c56c9102f129 375 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 368 8.2E-167 T 31-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_1203 952db357ac5d79caf117c56c9102f129 375 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 365 55.524 T 31-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 220 4.8E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 236 248 4.8E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 220 236 4.8E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 SMART SM00421 203 260 1.2E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 Pfam PF00196 Bacterial regulatory proteins, luxR family 204 258 1.6E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 SUPERFAMILY SSF46894 200 262 2.28E-15 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_5418 5c50e29ff2ba270ac2a7aa4a2a57f957 272 Gene3D G3DSA:1.10.10.10 148 269 7.4E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 8.5E-24 T 31-10-2018 IPR022569 Ferredoxin, C-terminal Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.4E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.4E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.4E-18 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 Pfam PF00037 4Fe-4S binding domain 34 55 4.7E-6 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 Gene3D G3DSA:3.30.70.20 2 99 7.6E-32 T 31-10-2018 Y89_1405 a7ba4c4976e1f97409517fb070e16420 107 SUPERFAMILY SSF54862 3 104 1.2E-24 T 31-10-2018 Y89_5455 d52063a33b1fa5a43bd1d12cd7e8539c 189 Pfam PF05069 Phage virion morphogenesis family 11 181 1.6E-29 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_5455 d52063a33b1fa5a43bd1d12cd7e8539c 189 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 11 121 5.0E-13 T 31-10-2018 IPR006522 Phage virion morphogensis protein Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 6.0E-26 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 1.1E-34 T 31-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.8E-24 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.8E-24 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.8E-24 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_3641 b247c0ca323f93920f157942e67bf7fd 88 PIRSF PIRSF004669 1 88 1.7E-25 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 17 238 1.5E-105 T 31-10-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 12 43 1.1E-14 T 31-10-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 81 109 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 SUPERFAMILY SSF49482 11 238 1.44E-74 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 Gene3D G3DSA:2.60.130.10 3 239 1.5E-100 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_0166 c0cc21081ebd5304c4824ceb70c57f1c 239 Pfam PF00775 Dioxygenase 49 230 6.5E-57 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_1944 cedf2e5eb1a9707e8ced2c7a0dd8ccf4 543 Pfam PF13584 Oxygen tolerance 13 460 1.3E-108 T 31-10-2018 IPR025738 Aerotolerance-related protein BatD Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 SUPERFAMILY SSF51735 100 287 8.86E-58 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 SUPERFAMILY SSF52283 1 133 5.67E-29 T 31-10-2018 Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 Gene3D G3DSA:3.40.50.720 97 287 7.5E-109 T 31-10-2018 Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 318 2.4E-28 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 286 5.6E-59 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Y89_1127 5c99a6423fae13e26e2c7acdc700e1ca 325 Gene3D G3DSA:3.40.50.720 5 313 7.5E-109 T 31-10-2018 Y89_1871 afa12309cb6ef38f1f254d42b5095fdf 260 Pfam PF00977 Histidine biosynthesis protein 5 232 1.5E-59 T 31-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Y89_1871 afa12309cb6ef38f1f254d42b5095fdf 260 Gene3D G3DSA:3.20.20.70 1 242 2.3E-74 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1871 afa12309cb6ef38f1f254d42b5095fdf 260 SUPERFAMILY SSF51366 1 234 4.4E-58 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 Gene3D G3DSA:3.30.465.10 1 219 2.4E-80 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 Gene3D G3DSA:3.30.390.50 222 325 5.5E-26 T 31-10-2018 Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 SMART SM01092 224 322 4.4E-27 T 31-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 225 322 6.7E-14 T 31-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 SUPERFAMILY SSF56176 1 217 4.03E-59 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 217 3.2E-50 T 31-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Y89_3389 086246fb7f3b1fa3d0cc589b8373d96f 329 SUPERFAMILY SSF55447 223 322 5.89E-27 T 31-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Y89_4147 03994d4a51cd85208d822064037f968c 157 Pfam PF08982 Domain of unknown function (DUF1857) 16 147 1.6E-24 T 31-10-2018 IPR015075 Acetylaranotin biosynthesis cluster protein L Y89_4147 03994d4a51cd85208d822064037f968c 157 Gene3D G3DSA:3.30.530.20 1 157 1.1E-56 T 31-10-2018 IPR023393 START-like domain superfamily Y89_4147 03994d4a51cd85208d822064037f968c 157 SUPERFAMILY SSF55961 1 149 8.79E-43 T 31-10-2018 Y89_5530 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Gene3D G3DSA:3.40.50.300 40 285 1.8E-53 T 31-10-2018 Y89_5530 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Pfam PF00005 ABC transporter 60 215 2.7E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5530 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 263 284 1.6E-8 T 31-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y89_5530 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 44 285 2.2E-116 T 31-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD Y89_5530 6eaaa92eb29fbd0f263a73dc17a0e3d9 285 SUPERFAMILY SSF52540 44 283 1.67E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4933 338319bb069c92173ec6e97e673b202a 367 SUPERFAMILY SSF53955 50 354 7.45E-96 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_4933 338319bb069c92173ec6e97e673b202a 367 Pfam PF13406 Transglycosylase SLT domain 59 352 2.1E-92 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 Y89_4933 338319bb069c92173ec6e97e673b202a 367 Gene3D G3DSA:1.10.8.350 62 235 6.8E-114 T 31-10-2018 Y89_4933 338319bb069c92173ec6e97e673b202a 367 Gene3D G3DSA:1.10.530.10 100 355 6.8E-114 T 31-10-2018 Y89_4933 338319bb069c92173ec6e97e673b202a 367 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 63 355 2.0E-116 T 31-10-2018 IPR011757 Lytic transglycosylase MltB Y89_3002 3182f74dc613b2ccba221d77f6780761 481 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 431 1.2E-142 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 Pfam PF01235 Sodium:alanine symporter family 50 444 6.1E-146 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 203 222 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 400 420 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 84 106 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 294 312 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 340 362 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 PRINTS PR00175 Sodium/alanine symporter signature 175 193 3.8E-47 T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_3002 3182f74dc613b2ccba221d77f6780761 481 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 84 99 - T 31-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Y89_4943 ec027a4df7f456370ca9619c58b076f9 157 Pfam PF02470 MlaD protein 38 116 2.1E-20 T 31-10-2018 IPR003399 Mce/MlaD Y89_4943 ec027a4df7f456370ca9619c58b076f9 157 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 147 8.6E-54 T 31-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 Y89_4504 e08d9e019c9cea14e08abab0950cb854 167 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 86 143 4.0E-21 T 31-10-2018 IPR018637 Domain of unknown function DUF2059 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 Pfam PF05954 Phage late control gene D protein (GPD) 29 330 2.2E-104 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 523 6.7E-203 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 23 506 6.8E-198 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 Gene3D G3DSA:3.30.1920.30 224 286 1.8E-141 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 Gene3D G3DSA:2.40.50.230 355 457 3.3E-50 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 Gene3D G3DSA:3.55.50.10 98 189 1.8E-141 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 SUPERFAMILY SSF69349 442 626 1.65E-41 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 SUPERFAMILY SSF69279 190 363 4.42E-36 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 SUPERFAMILY SSF69279 11 184 1.28E-62 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 Gene3D G3DSA:2.30.110.50 14 333 1.8E-141 T 31-10-2018 Y89_0101 ea35c90906bf6faee05a83285b508cbb 646 SUPERFAMILY SSF69255 365 452 1.15E-35 T 31-10-2018 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 SUPERFAMILY SSF52833 5 160 2.05E-60 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 Gene3D G3DSA:3.40.30.10 2 161 1.3E-65 T 31-10-2018 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.7E-20 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.7E-20 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 PRINTS PR01011 Glutathione peroxidase family signature 124 133 2.7E-20 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 31-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 PIRSF PIRSF000303 1 161 4.1E-64 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_2195 6418c0f43374c5dd3d8c5df23126d87f 161 Pfam PF00255 Glutathione peroxidase 8 112 6.8E-40 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 Pfam PF07286 Protein of unknown function (DUF1445) 117 259 3.4E-59 T 31-10-2018 IPR009906 D-glutamate cyclase Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 Gene3D G3DSA:3.40.1640.10 23 255 3.6E-84 T 31-10-2018 Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 PIRSF PIRSF029755 3 265 1.1E-114 T 31-10-2018 IPR016938 Uncharacterised protein family UPF0317 Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 Gene3D G3DSA:3.30.2040.10 127 239 3.6E-84 T 31-10-2018 Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 SUPERFAMILY SSF160920 10 259 3.01E-101 T 31-10-2018 IPR038021 Putative hydro-lyase Y89_3165 5af3cfe276f0b7468a1faecb6a30f0c2 265 Hamap MF_01830 Putative hydro-lyase . 13 264 49.731 T 31-10-2018 IPR016938 Uncharacterised protein family UPF0317 Y89_6359 6866d6787a118542a2881bc930857c32 318 SUPERFAMILY SSF52540 59 298 4.53E-20 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6359 6866d6787a118542a2881bc930857c32 318 Pfam PF00437 Type II/IV secretion system protein 81 265 3.2E-23 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_6359 6866d6787a118542a2881bc930857c32 318 Gene3D G3DSA:3.40.50.300 93 315 1.7E-45 T 31-10-2018 Y89_4047 15e8beaf452548345574353b507d16b7 179 ProSitePatterns PS00761 Signal peptidases I signature 3. 135 148 - T 31-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Y89_4047 15e8beaf452548345574353b507d16b7 179 Pfam PF00717 Peptidase S24-like 35 104 1.3E-18 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y89_4047 15e8beaf452548345574353b507d16b7 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 81 93 2.7E-20 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4047 15e8beaf452548345574353b507d16b7 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 29 45 2.7E-20 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4047 15e8beaf452548345574353b507d16b7 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 130 149 2.7E-20 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4047 15e8beaf452548345574353b507d16b7 179 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 26 169 9.0E-51 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Y89_4047 15e8beaf452548345574353b507d16b7 179 SUPERFAMILY SSF51306 30 170 7.33E-55 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_4047 15e8beaf452548345574353b507d16b7 179 ProSitePatterns PS00760 Signal peptidases I lysine active site. 83 95 - T 31-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Y89_0474 e92e19d570999aa1d808906765550002 243 SUPERFAMILY SSF53850 22 240 1.54E-38 T 31-10-2018 Y89_0474 e92e19d570999aa1d808906765550002 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 241 8.6E-22 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0474 e92e19d570999aa1d808906765550002 243 Gene3D G3DSA:3.40.190.10 103 201 3.9E-27 T 31-10-2018 Y89_0474 e92e19d570999aa1d808906765550002 243 SMART SM00062 21 243 0.0014 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_0474 e92e19d570999aa1d808906765550002 243 Gene3D G3DSA:3.40.190.10 28 240 3.9E-27 T 31-10-2018 Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 Pfam PF00005 ABC transporter 30 169 4.0E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 SUPERFAMILY SSF52540 10 200 4.12E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 SMART SM00382 38 231 2.1E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 14 214 8.1E-84 T 31-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 Y89_3864 94152e5c889c102f3ffc9ce71ded6a3a 233 Gene3D G3DSA:3.40.50.300 7 209 2.2E-44 T 31-10-2018 Y89_4743 7011306f8ab4e27897cea0329613cee0 200 SUPERFAMILY SSF143120 7 51 2.88E-5 T 31-10-2018 IPR036165 YefM-like superfamily Y89_4743 7011306f8ab4e27897cea0329613cee0 200 Pfam PF05598 Transposase domain (DUF772) 93 143 5.6E-11 T 31-10-2018 IPR008490 Transposase InsH, N-terminal Y89_4229 b8a71d4511ce558b9109ed181b917354 106 Gene3D G3DSA:3.90.1650.10 1 106 2.1E-66 T 31-10-2018 IPR036808 PA1123-like superfamily Y89_4229 b8a71d4511ce558b9109ed181b917354 106 Pfam PF09634 Protein of unknown function (DUF2025) 1 105 3.6E-59 T 31-10-2018 IPR023117 PA1123-like domain Y89_4229 b8a71d4511ce558b9109ed181b917354 106 SUPERFAMILY SSF160477 1 105 6.8E-56 T 31-10-2018 IPR036808 PA1123-like superfamily Y89_6134 6ab01b69bbe57852e6852e9f863dd24b 325 Gene3D G3DSA:3.20.20.140 1 325 2.0E-127 T 31-10-2018 Y89_6134 6ab01b69bbe57852e6852e9f863dd24b 325 SUPERFAMILY SSF51556 9 324 1.36E-82 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_6134 6ab01b69bbe57852e6852e9f863dd24b 325 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 6 320 3.0E-93 T 31-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Y89_0846 e37ac202c33b19e04a51cae00e50e661 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 31-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y89_0846 e37ac202c33b19e04a51cae00e50e661 93 Pfam PF13616 PPIC-type PPIASE domain 8 91 4.2E-21 T 31-10-2018 Y89_0846 e37ac202c33b19e04a51cae00e50e661 93 SUPERFAMILY SSF54534 5 92 1.05E-27 T 31-10-2018 Y89_0846 e37ac202c33b19e04a51cae00e50e661 93 Gene3D G3DSA:3.10.50.40 2 92 3.3E-33 T 31-10-2018 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 SUPERFAMILY SSF52954 330 425 5.4E-23 T 31-10-2018 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 Gene3D G3DSA:3.30.930.10 2 326 6.6E-113 T 31-10-2018 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 424 33.279 T 31-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 Pfam PF03129 Anticodon binding domain 335 422 2.0E-8 T 31-10-2018 IPR004154 Anticodon-binding Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 414 2.6E-152 T 31-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 PIRSF PIRSF001549 2 425 1.8E-115 T 31-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 SUPERFAMILY SSF55681 6 323 6.7E-102 T 31-10-2018 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 Pfam PF13393 Histidyl-tRNA synthetase 10 313 7.1E-45 T 31-10-2018 Y89_1224 2e0a41db5348ecf9f4202b6cc61092f8 429 Gene3D G3DSA:3.40.50.800 330 424 8.7E-24 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily Y89_5309 6e5d15b490cdf4b8460e6e850678e86a 150 Pfam PF13511 Domain of unknown function (DUF4124) 10 67 1.6E-15 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.0E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.0E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.0E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 SMART SM00421 151 208 4.0E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 Pfam PF08448 PAS fold 28 130 7.0E-6 T 31-10-2018 IPR013656 PAS fold-4 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 Gene3D G3DSA:1.10.10.10 137 213 2.8E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 SUPERFAMILY SSF46894 145 212 6.46E-15 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_4003 e8e1c7ef37af7a85c7bb683764af5a07 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 198 2.5E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0087 bb9076e612c3e5bab84fa094598e2169 1177 Pfam PF14331 ImcF-related N-terminal domain 195 452 1.6E-99 T 31-10-2018 IPR025743 ImcF-related, N-terminal domain Y89_0087 bb9076e612c3e5bab84fa094598e2169 1177 Pfam PF06761 Intracellular multiplication and human macrophage-killing 504 797 3.0E-86 T 31-10-2018 IPR009612 ImcF-related Y89_0087 bb9076e612c3e5bab84fa094598e2169 1177 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1175 0.0 T 31-10-2018 IPR017731 Type VI secretion system, IcmF Y89_0087 bb9076e612c3e5bab84fa094598e2169 1177 Pfam PF06744 Type VI secretion protein IcmF C-terminal 925 1125 3.7E-69 T 31-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal Y89_0087 bb9076e612c3e5bab84fa094598e2169 1177 SUPERFAMILY SSF52540 125 294 1.42E-11 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4042 74c71218bbe416168598b6336f2decce 174 PIRSF PIRSF029393 1 172 3.9E-82 T 31-10-2018 IPR016917 Uncharacterised conserved protein UCP029393 Y89_4042 74c71218bbe416168598b6336f2decce 174 Pfam PF11157 Protein of unknown function (DUF2937) 2 159 1.8E-62 T 31-10-2018 IPR022584 Protein of unknown function DUF2937 Y89_2056 61c300edee0a69c9f82a2ffcbef41b1c 271 Pfam PF01063 Amino-transferase class IV 25 246 2.1E-48 T 31-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Y89_2056 61c300edee0a69c9f82a2ffcbef41b1c 271 Gene3D G3DSA:3.30.470.10 2 111 1.3E-35 T 31-10-2018 Y89_2056 61c300edee0a69c9f82a2ffcbef41b1c 271 SUPERFAMILY SSF56752 4 263 9.03E-74 T 31-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Y89_2056 61c300edee0a69c9f82a2ffcbef41b1c 271 Gene3D G3DSA:3.20.10.10 112 271 5.2E-65 T 31-10-2018 Y89_2056 61c300edee0a69c9f82a2ffcbef41b1c 271 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 4 263 1.4E-88 T 31-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 Y89_5720 6a773c513f8105a0ed475be480b5c204 255 Gene3D G3DSA:2.40.50.90 21 158 7.1E-29 T 31-10-2018 IPR035437 SNase-like, OB-fold superfamily Y89_5720 6a773c513f8105a0ed475be480b5c204 255 SMART SM00318 24 155 1.7E-13 T 31-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Y89_5720 6a773c513f8105a0ed475be480b5c204 255 SUPERFAMILY SSF50199 22 156 5.89E-28 T 31-10-2018 Y89_5720 6a773c513f8105a0ed475be480b5c204 255 Pfam PF00565 Staphylococcal nuclease homologue 47 154 6.3E-15 T 31-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Y89_0080 6f7a5b2d8b4145c764265ec7eb25c50c 304 Pfam PF13488 Glycine zipper 71 116 6.7E-7 T 31-10-2018 IPR039567 Glycine zipper domain Y89_3172 18ae8d57f4c2a4ce8962812018bacbee 158 Pfam PF13628 Domain of unknown function (DUF4142) 24 152 1.6E-21 T 31-10-2018 IPR025419 Domain of unknown function DUF4142 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 SUPERFAMILY SSF52172 7 178 3.13E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 Gene3D G3DSA:1.10.10.10 137 238 1.2E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 SUPERFAMILY SSF46894 154 235 1.22E-15 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 SMART SM00862 158 235 5.8E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 Gene3D G3DSA:3.40.50.2300 4 127 7.1E-35 T 31-10-2018 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 SMART SM00448 9 119 8.4E-42 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 Pfam PF00072 Response regulator receiver domain 12 119 2.5E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4430 e0f0b849b3b68e708d81118eab7e5374 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 235 2.7E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 6.1E-92 T 31-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 PIRSF PIRSF001359 1 329 1.4E-83 T 31-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 SUPERFAMILY SSF51569 3 328 7.77E-107 T 31-10-2018 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 Gene3D G3DSA:3.20.20.70 1 354 5.5E-154 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 8.2E-98 T 31-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 31-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 31-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Y89_0577 4a1888f4f59c5cebc243ab1d0d538d93 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 7.1E-217 T 31-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 Gene3D G3DSA:3.30.1390.20 1 58 4.5E-23 T 31-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.751 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 57 3.9E-20 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 52 1.2E-17 T 31-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 PIRSF PIRSF002211 1 58 7.1E-24 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_0777 bed1dda5b58a3fb6c37a198a2dae8687 58 SUPERFAMILY SSF55129 1 57 5.89E-20 T 31-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Y89_4720 fbe5fe753e1535c2e639226894f3a38c 97 Pfam PF11006 Protein of unknown function (DUF2845) 19 93 8.4E-17 T 31-10-2018 IPR021268 Protein of unknown function DUF2845 Y89_4156 03247097c08fbe75ec180c1fc809cba9 256 Gene3D G3DSA:3.30.1600.10 34 175 6.3E-61 T 31-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Y89_4156 03247097c08fbe75ec180c1fc809cba9 256 Pfam PF02146 Sir2 family 25 202 3.5E-37 T 31-10-2018 IPR003000 Sirtuin family GO:0070403 Y89_4156 03247097c08fbe75ec180c1fc809cba9 256 SUPERFAMILY SSF52467 6 254 1.12E-69 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_4156 03247097c08fbe75ec180c1fc809cba9 256 Gene3D G3DSA:3.40.50.1220 16 249 6.3E-61 T 31-10-2018 Y89_6285 bdf78f0619554ad7b26148ed62575e78 319 Gene3D G3DSA:3.40.190.10 31 315 1.4E-99 T 31-10-2018 Y89_6285 bdf78f0619554ad7b26148ed62575e78 319 Pfam PF16868 NMT1-like family 31 315 8.9E-97 T 31-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y89_6285 bdf78f0619554ad7b26148ed62575e78 319 Gene3D G3DSA:3.40.190.10 116 252 1.4E-99 T 31-10-2018 Y89_6285 bdf78f0619554ad7b26148ed62575e78 319 SUPERFAMILY SSF53850 26 317 2.32E-75 T 31-10-2018 Y89_6285 bdf78f0619554ad7b26148ed62575e78 319 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 9 315 3.6E-117 T 31-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 2.4E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 SUPERFAMILY SSF48498 76 180 1.86E-14 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 SUPERFAMILY SSF46689 3 76 3.54E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 8.1E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 8.1E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1985 6d10e4c980492a050678173a0b6cfd4f 185 Gene3D G3DSA:1.10.357.10 1 185 2.3E-57 T 31-10-2018 Y89_5762 e1703d84556384e803ed37f7ffe2640a 266 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 262 5.1E-123 T 31-10-2018 IPR010247 N-formylglutamate deformylase Y89_5762 e1703d84556384e803ed37f7ffe2640a 266 Pfam PF05013 N-formylglutamate amidohydrolase 13 230 3.7E-71 T 31-10-2018 IPR007709 N-formylglutamate amidohydrolase Y89_5762 e1703d84556384e803ed37f7ffe2640a 266 Gene3D G3DSA:3.40.630.40 1 264 6.4E-79 T 31-10-2018 Y89_5762 e1703d84556384e803ed37f7ffe2640a 266 SUPERFAMILY SSF53187 5 263 2.72E-82 T 31-10-2018 Y89_2481 f59b35d24b7c6bd272aebefa379b2494 101 Gene3D G3DSA:3.40.1260.10 2 101 5.2E-28 T 31-10-2018 IPR027396 DsrEFH-like Y89_2481 f59b35d24b7c6bd272aebefa379b2494 101 SUPERFAMILY SSF75169 4 100 1.77E-24 T 31-10-2018 IPR027396 DsrEFH-like Y89_2481 f59b35d24b7c6bd272aebefa379b2494 101 Pfam PF04077 DsrH like protein 10 97 1.8E-23 T 31-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Y89_2481 f59b35d24b7c6bd272aebefa379b2494 101 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 5 100 5.1E-29 T 31-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Y89_0900 8bd6b672d5397a835957a7ec2b8865bb 259 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 246 6.9E-121 T 31-10-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 Y89_0900 8bd6b672d5397a835957a7ec2b8865bb 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 46 244 1.2E-56 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_0900 8bd6b672d5397a835957a7ec2b8865bb 259 SUPERFAMILY SSF56529 39 249 3.14E-70 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0900 8bd6b672d5397a835957a7ec2b8865bb 259 Gene3D G3DSA:3.90.850.10 36 249 5.2E-74 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 PRINTS PR00618 DksA/TraR zinc finger signature 111 122 7.6E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 PRINTS PR00618 DksA/TraR zinc finger signature 123 135 7.6E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 Gene3D G3DSA:1.20.120.910 17 147 1.0E-36 T 31-10-2018 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 29 137 7.6E-52 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 SUPERFAMILY SSF57716 108 145 2.71E-10 T 31-10-2018 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 111 135 - T 31-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 108 140 4.0E-11 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 25 147 31.087 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Y89_5335 0e7c1ab49f2658f52944309cbfb9f33f 148 SUPERFAMILY SSF109635 11 106 6.8E-34 T 31-10-2018 IPR037187 DksA, N-terminal domain superfamily Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 269 1.0E-34 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 Gene3D G3DSA:2.40.30.170 59 279 1.6E-74 T 31-10-2018 Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 Gene3D G3DSA:2.40.420.20 280 364 1.6E-74 T 31-10-2018 Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 SUPERFAMILY SSF111369 60 273 4.05E-45 T 31-10-2018 Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 366 2.3E-79 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 Gene3D G3DSA:1.10.287.470 103 162 1.6E-74 T 31-10-2018 Y89_4861 7684e0a8e272dbb6bdce47270d9d8c31 376 Gene3D G3DSA:2.40.50.100 68 196 1.6E-74 T 31-10-2018 Y89_4885 0073a046f4d53029418143c562935a39 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 200 327 6.3E-12 T 31-10-2018 IPR000160 GGDEF domain Y89_4885 0073a046f4d53029418143c562935a39 366 SUPERFAMILY SSF52172 50 193 2.28E-28 T 31-10-2018 IPR011006 CheY-like superfamily Y89_4885 0073a046f4d53029418143c562935a39 366 Pfam PF00072 Response regulator receiver domain 53 167 2.1E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4885 0073a046f4d53029418143c562935a39 366 Gene3D G3DSA:3.40.50.2300 46 173 1.0E-26 T 31-10-2018 Y89_4885 0073a046f4d53029418143c562935a39 366 SUPERFAMILY SSF55073 203 355 7.53E-12 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_4885 0073a046f4d53029418143c562935a39 366 Gene3D G3DSA:3.30.70.270 192 361 3.3E-16 T 31-10-2018 Y89_4885 0073a046f4d53029418143c562935a39 366 SMART SM00448 51 167 1.1E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4885 0073a046f4d53029418143c562935a39 366 SMART SM00267 187 355 2.3E-5 T 31-10-2018 IPR000160 GGDEF domain Y89_6249 9a1429e14c8c8b76fb3c5335a42df514 250 SUPERFAMILY SSF53187 12 250 5.34E-68 T 31-10-2018 Y89_6249 9a1429e14c8c8b76fb3c5335a42df514 250 Pfam PF05013 N-formylglutamate amidohydrolase 27 231 2.4E-39 T 31-10-2018 IPR007709 N-formylglutamate amidohydrolase Y89_6249 9a1429e14c8c8b76fb3c5335a42df514 250 PIRSF PIRSF029730 6 250 6.8E-94 T 31-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 Y89_6249 9a1429e14c8c8b76fb3c5335a42df514 250 Gene3D G3DSA:3.40.630.40 18 250 4.9E-74 T 31-10-2018 Y89_2158 1ef84922c660fd95a85b2b6f8cf53cc6 144 Pfam PF07681 DoxX 16 103 1.8E-20 T 31-10-2018 IPR032808 DoxX family Y89_0824 9fbbb93a539feb91243cdc77d49385ba 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 527 4.8E-21 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_0824 9fbbb93a539feb91243cdc77d49385ba 540 SUPERFAMILY SSF56801 13 538 2.22E-142 T 31-10-2018 Y89_0824 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:3.40.50.12780 6 438 9.4E-113 T 31-10-2018 Y89_0824 9fbbb93a539feb91243cdc77d49385ba 540 Gene3D G3DSA:3.30.300.310 439 539 1.1E-33 T 31-10-2018 Y89_0824 9fbbb93a539feb91243cdc77d49385ba 540 Pfam PF00501 AMP-binding enzyme 25 443 1.9E-94 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 Gene3D G3DSA:3.30.1370.30 2 72 3.5E-28 T 31-10-2018 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.877 T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 Gene3D G3DSA:3.30.1490.10 73 129 3.9E-24 T 31-10-2018 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 SUPERFAMILY SSF56047 2 130 5.49E-47 T 31-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0773 be05b762ee7fa34563a966f2d88fc537 130 Pfam PF00410 Ribosomal protein S8 5 130 5.7E-50 T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0691 d8f8f1851b4375f36e9a6c048dee13df 185 Gene3D G3DSA:2.40.50.230 4 87 1.2E-25 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Y89_0691 d8f8f1851b4375f36e9a6c048dee13df 185 Pfam PF04717 Type VI secretion system, phage-baseplate injector 6 116 2.4E-44 T 31-10-2018 IPR006531 Gp5 N-terminal Y89_0691 d8f8f1851b4375f36e9a6c048dee13df 185 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 185 1.9E-56 T 31-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 Y89_1906 2a926be7670c9f86eb17f8b3383a68be 211 Gene3D G3DSA:3.20.20.70 2 208 9.0E-66 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1906 2a926be7670c9f86eb17f8b3383a68be 211 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 206 41.722 T 31-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Y89_1906 2a926be7670c9f86eb17f8b3383a68be 211 SUPERFAMILY SSF51366 5 205 1.4E-61 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_1906 2a926be7670c9f86eb17f8b3383a68be 211 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 201 7.3E-45 T 31-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 SUPERFAMILY SSF46689 5 86 2.99E-22 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 61 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 5.3E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 5.3E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 4.0E-18 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4060 39e94bee67fc9f05bd0e530b721dc1d4 197 Gene3D G3DSA:1.10.357.10 3 195 6.8E-39 T 31-10-2018 Y89_3486 ff0527da9ee724df5b95d8a66bce047d 165 Gene3D G3DSA:3.90.960.10 1 165 5.9E-43 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_3486 ff0527da9ee724df5b95d8a66bce047d 165 SUPERFAMILY SSF55826 5 163 4.84E-40 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_3486 ff0527da9ee724df5b95d8a66bce047d 165 Pfam PF04073 Aminoacyl-tRNA editing domain 26 152 4.8E-26 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 SUPERFAMILY SSF51735 8 155 1.61E-20 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 Gene3D G3DSA:3.40.50.720 6 106 4.1E-11 T 31-10-2018 Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 101 2.6E-9 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 Gene3D G3DSA:3.30.360.10 123 334 8.9E-42 T 31-10-2018 Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 201 5.5E-7 T 31-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 Y89_1863 323a6a6699b8e702a4d770b3838820dd 336 SUPERFAMILY SSF55347 127 289 4.41E-26 T 31-10-2018 Y89_1327 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 SUPERFAMILY SSF46689 32 103 1.44E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1327 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 Gene3D G3DSA:1.10.357.10 35 237 3.1E-85 T 31-10-2018 Y89_1327 bb19245ca51bb7f53ccbd3a9a6fc0d3f 237 Pfam PF00440 Bacterial regulatory proteins, tetR family 40 83 2.0E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5641 20a57aafdf6f8b60142e022471246ae8 205 SUPERFAMILY SSF55811 9 204 7.72E-50 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5641 20a57aafdf6f8b60142e022471246ae8 205 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 11 195 7.6E-53 T 31-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 Y89_5641 20a57aafdf6f8b60142e022471246ae8 205 ProSitePatterns PS00893 Nudix box signature. 93 114 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Y89_5641 20a57aafdf6f8b60142e022471246ae8 205 Gene3D G3DSA:3.90.79.10 3 205 5.2E-66 T 31-10-2018 Y89_5641 20a57aafdf6f8b60142e022471246ae8 205 Pfam PF00293 NUDIX domain 52 174 8.0E-15 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_2337 f168be0ff930745174b89a2d9f501d20 348 Pfam PF00437 Type II/IV secretion system protein 34 299 1.3E-78 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_2337 f168be0ff930745174b89a2d9f501d20 348 Gene3D G3DSA:3.30.450.90 26 130 2.6E-13 T 31-10-2018 Y89_2337 f168be0ff930745174b89a2d9f501d20 348 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 21 321 1.1E-123 T 31-10-2018 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 Y89_2337 f168be0ff930745174b89a2d9f501d20 348 SUPERFAMILY SSF52540 31 298 3.25E-35 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2337 f168be0ff930745174b89a2d9f501d20 348 Gene3D G3DSA:3.40.50.300 131 329 6.3E-53 T 31-10-2018 Y89_0629 e2fae3ce6b7933b072b5a07c0ba3511a 244 SMART SM00028 180 213 0.0012 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_0629 e2fae3ce6b7933b072b5a07c0ba3511a 244 Pfam PF05944 Phage small terminase subunit 46 170 8.5E-35 T 31-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 Y89_0629 e2fae3ce6b7933b072b5a07c0ba3511a 244 SUPERFAMILY SSF48452 180 229 4.43E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4689 aab95b377df3c4b995cd909714a63d15 476 Pfam PF13751 Transposase DDE domain 346 461 3.7E-16 T 31-10-2018 IPR025668 Transposase DDE domain Y89_4689 aab95b377df3c4b995cd909714a63d15 476 Pfam PF05598 Transposase domain (DUF772) 56 122 8.9E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal Y89_0906 37e9c0b8da58347af8192764b30b1c27 195 SUPERFAMILY SSF48613 7 191 9.39E-42 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_0906 37e9c0b8da58347af8192764b30b1c27 195 Pfam PF01126 Heme oxygenase 9 192 4.0E-34 T 31-10-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_0906 37e9c0b8da58347af8192764b30b1c27 195 Gene3D G3DSA:1.20.910.10 2 193 9.1E-39 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_5123 625de616b35f1c66589e09d832d4cc8a 219 Pfam PF11444 Protein of unknown function (DUF2895) 7 204 7.4E-80 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_5123 625de616b35f1c66589e09d832d4cc8a 219 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 3 205 9.2E-95 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_4289 c610b1ffb03a7349b0fcf293d51abc98 132 Pfam PF04343 Protein of unknown function, DUF488 4 111 7.3E-30 T 31-10-2018 IPR007438 Protein of unknown function DUF488 Y89_0676 b0e42e9ec29f0151a7ef2d2153b28b9f 344 Gene3D G3DSA:3.40.190.10 127 329 7.4E-114 T 31-10-2018 Y89_0676 b0e42e9ec29f0151a7ef2d2153b28b9f 344 Gene3D G3DSA:3.40.190.10 27 322 7.4E-114 T 31-10-2018 Y89_0676 b0e42e9ec29f0151a7ef2d2153b28b9f 344 SUPERFAMILY SSF53850 25 341 7.76E-65 T 31-10-2018 Y89_0676 b0e42e9ec29f0151a7ef2d2153b28b9f 344 Pfam PF13416 Bacterial extracellular solute-binding protein 43 308 3.6E-43 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_3666 170254279b8d540d4e199c2694701bc4 289 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 61 270 6.2E-73 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_3666 170254279b8d540d4e199c2694701bc4 289 Pfam PF09850 Type VI secretion system protein DotU 62 264 1.7E-66 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_3666 170254279b8d540d4e199c2694701bc4 289 Gene3D G3DSA:1.25.40.590 59 217 3.9E-52 T 31-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily Y89_4346 6a1a6553f05a7de6fbefbe7e53c5fc1b 396 Pfam PF06804 NlpB/DapX lipoprotein 36 374 4.5E-22 T 31-10-2018 IPR010653 NlpB/DapX lipoprotein Y89_4346 6a1a6553f05a7de6fbefbe7e53c5fc1b 396 Gene3D G3DSA:3.30.310.170 249 380 1.9E-5 T 31-10-2018 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 4.4E-65 T 31-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 43.382 T 31-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 Gene3D G3DSA:3.30.230.40 92 197 1.1E-38 T 31-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 SUPERFAMILY SSF54211 4 88 3.67E-34 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 31-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 SUPERFAMILY SSF54211 89 181 3.49E-35 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 Gene3D G3DSA:3.30.230.40 1 91 2.0E-39 T 31-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Y89_5816 34ea8fd09ec03b88f1e03687cdce9cea 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 31-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 SMART SM00422 4 73 5.0E-20 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 4.6E-15 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 4.6E-15 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 4.6E-15 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 TIGRFAM TIGR02054 MerD: mercuric resistence transcriptional repressor protein MerD 1 79 3.1E-47 T 31-10-2018 IPR011797 Mercuric resistence transcriptional repressor protein MerD GO:0003677|GO:0045892|GO:0046689 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 Gene3D G3DSA:1.10.1660.10 6 88 5.7E-13 T 31-10-2018 Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 SUPERFAMILY SSF46955 4 80 1.92E-13 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_4709 12c68560a36ef9eb00f8b296ddd7e0df 88 Pfam PF13411 MerR HTH family regulatory protein 4 72 3.1E-11 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_2344 dd72817df8e0946a350b85f9c6ab521d 328 Gene3D G3DSA:2.60.40.2500 226 323 1.4E-7 T 31-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Y89_2344 dd72817df8e0946a350b85f9c6ab521d 328 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 102 309 4.7E-89 T 31-10-2018 IPR014142 P-type conjugative transfer protein TrbG Y89_2344 dd72817df8e0946a350b85f9c6ab521d 328 Pfam PF03524 Conjugal transfer protein 101 320 2.8E-64 T 31-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Y89_4543 5d3583d108bbe56c6957160d228ec3e3 144 Gene3D G3DSA:3.30.1330.40 1 142 3.2E-50 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_4543 5d3583d108bbe56c6957160d228ec3e3 144 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 10 141 3.6E-25 T 31-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Y89_4543 5d3583d108bbe56c6957160d228ec3e3 144 SUPERFAMILY SSF55298 7 142 8.17E-45 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_3264 0c6a397fd249984c4997c382ff1ee1a7 594 Pfam PF00665 Integrase core domain 153 304 2.5E-11 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_3264 0c6a397fd249984c4997c382ff1ee1a7 594 SUPERFAMILY SSF53098 201 346 1.97E-14 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3264 0c6a397fd249984c4997c382ff1ee1a7 594 Gene3D G3DSA:3.30.420.10 142 366 1.7E-6 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_5185 a9a9f995a41dd38841c94bd544afee8d 162 Pfam PF11220 Protein of unknown function (DUF3015) 19 158 4.7E-56 T 31-10-2018 IPR021383 Protein of unknown function DUF3015 Y89_4295 4bd294f9ab97ed6b1406dd9f7881b629 115 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 17 105 8.2E-27 T 31-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Y89_4295 4bd294f9ab97ed6b1406dd9f7881b629 115 Pfam PF03334 Na+/H+ antiporter subunit 17 97 3.1E-27 T 31-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Y89_5978 667db6c23d7a55f034f55aab0a6978b7 86 Pfam PF04380 Membrane fusogenic activity 5 78 5.5E-25 T 31-10-2018 IPR007475 Membrane fusogenic activity Y89_4672 61d58d500653416874964b4617db9978 146 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 12 142 2.6E-53 T 31-10-2018 IPR022262 Lipoprotein, putative Y89_0069 35892bb328e39488aebd106380509650 141 SUPERFAMILY SSF82784 2 139 1.44E-41 T 31-10-2018 IPR036102 OsmC/Ohr superfamily Y89_0069 35892bb328e39488aebd106380509650 141 Pfam PF02566 OsmC-like protein 43 135 5.5E-20 T 31-10-2018 IPR003718 OsmC/Ohr family Y89_0069 35892bb328e39488aebd106380509650 141 Gene3D G3DSA:3.30.300.20 1 140 8.0E-47 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta Y89_0069 35892bb328e39488aebd106380509650 141 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 2 137 3.1E-64 T 31-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 Gene3D G3DSA:3.40.800.10 1 318 1.1E-132 T 31-10-2018 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 TIGRFAM TIGR01230 agmatinase: agmatinase 39 308 4.1E-54 T 31-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 PIRSF PIRSF036979 14 314 1.4E-91 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 SUPERFAMILY SSF52768 15 311 5.22E-95 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 Pfam PF00491 Arginase family 36 307 4.0E-86 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 ProSitePatterns PS01053 Arginase family signature. 238 259 - T 31-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 PRINTS PR00116 Arginase signature 122 137 5.9E-11 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_0306 7ef8d149a967ec4058e6710ff2512e35 318 PRINTS PR00116 Arginase signature 235 264 5.9E-11 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 Pfam PF02195 ParB-like nuclease domain 38 127 4.0E-30 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 34 204 7.1E-64 T 31-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 Gene3D G3DSA:3.90.1530.30 50 113 1.2E-28 T 31-10-2018 Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 Gene3D G3DSA:1.10.10.2830 114 227 1.0E-38 T 31-10-2018 Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 SMART SM00470 37 127 5.3E-39 T 31-10-2018 IPR003115 ParB/Sulfiredoxin Y89_6302 77b9e9cc07c60788e96e79cd70514f9c 290 SUPERFAMILY SSF110849 36 180 1.2E-34 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_4310 244417ba132609a70f0fbe4822514b12 714 Gene3D G3DSA:3.40.50.300 23 302 3.3E-35 T 31-10-2018 Y89_4310 244417ba132609a70f0fbe4822514b12 714 Pfam PF13307 Helicase C-terminal domain 553 708 4.3E-34 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y89_4310 244417ba132609a70f0fbe4822514b12 714 SMART SM00491 562 695 1.1E-29 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Y89_4310 244417ba132609a70f0fbe4822514b12 714 Gene3D G3DSA:3.40.50.300 526 712 4.0E-32 T 31-10-2018 Y89_4310 244417ba132609a70f0fbe4822514b12 714 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 32 714 38.621 T 31-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 Y89_4310 244417ba132609a70f0fbe4822514b12 714 SUPERFAMILY SSF52540 57 689 8.54E-17 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2455 200f724f8651d8999251fe7d9a0b7f52 273 Pfam PF00263 Bacterial type II and III secretion system protein 137 248 1.5E-7 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_2455 200f724f8651d8999251fe7d9a0b7f52 273 Pfam PF03958 Bacterial type II/III secretion system short domain 26 83 3.2E-10 T 31-10-2018 IPR005644 NolW-like Y89_2455 200f724f8651d8999251fe7d9a0b7f52 273 Gene3D G3DSA:3.30.1370.120 11 86 2.3E-9 T 31-10-2018 IPR038591 NolW-like superfamily Y89_0296 e807c8b424afdef15ab0c57e5322efc2 250 Pfam PF01925 Sulfite exporter TauE/SafE 13 243 3.6E-25 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_1935 4513a0d893a73e04f920e9f4793aaa5c 277 Pfam PF10977 Protein of unknown function (DUF2797) 40 273 2.8E-98 T 31-10-2018 IPR021246 Protein of unknown function DUF2797 Y89_5989 7b558a4d7b0dca9811c1f1bccd08427f 444 Pfam PF11902 Protein of unknown function (DUF3422) 26 434 3.7E-145 T 31-10-2018 IPR021830 Protein of unknown function DUF3422 Y89_5531 924bb4d8b33258651bb8a178ea4771e3 232 Pfam PF00005 ABC transporter 17 161 1.7E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5531 924bb4d8b33258651bb8a178ea4771e3 232 SMART SM00382 26 211 1.3E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5531 924bb4d8b33258651bb8a178ea4771e3 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 4.5E-106 T 31-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE Y89_5531 924bb4d8b33258651bb8a178ea4771e3 232 SUPERFAMILY SSF52540 2 221 2.66E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5531 924bb4d8b33258651bb8a178ea4771e3 232 Gene3D G3DSA:3.40.50.300 1 226 5.6E-61 T 31-10-2018 Y89_3788 96432ae5ac6425755c608d6b69f709f6 179 Pfam PF05751 FixH 12 155 2.2E-39 T 31-10-2018 IPR008620 Nitrogen fixation protein FixH Y89_3663 4358be3415734a357f5a5cb43f018561 330 Gene3D G3DSA:1.10.510.10 143 323 1.0E-35 T 31-10-2018 Y89_3663 4358be3415734a357f5a5cb43f018561 330 Pfam PF00069 Protein kinase domain 52 281 7.8E-38 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_3663 4358be3415734a357f5a5cb43f018561 330 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 58 87 - T 31-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Y89_3663 4358be3415734a357f5a5cb43f018561 330 SMART SM00220 52 324 1.5E-42 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Y89_3663 4358be3415734a357f5a5cb43f018561 330 SUPERFAMILY SSF56112 40 308 1.84E-59 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_3663 4358be3415734a357f5a5cb43f018561 330 Gene3D G3DSA:3.30.200.20 16 142 3.3E-21 T 31-10-2018 Y89_3663 4358be3415734a357f5a5cb43f018561 330 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 180 192 - T 31-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 5.6E-102 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 SUPERFAMILY SSF75625 3 246 3.79E-96 T 31-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:3.30.70.980 86 236 2.8E-57 T 31-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 Pfam PF01709 Transcriptional regulator 5 237 6.4E-94 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:1.10.10.200 1 81 9.6E-34 T 31-10-2018 IPR017856 Integrase-like, N-terminal Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.288 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_4391 96bd86c41b7f9036d273a1e8368e7d84 248 Gene3D G3DSA:3.30.70.980 130 205 2.8E-57 T 31-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 SUPERFAMILY SSF51726 1 354 3.4E-123 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 348 1.0E-134 T 31-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 6.3E-142 T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 Gene3D G3DSA:3.20.20.210 1 355 8.3E-170 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 350 50.001 T 31-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y89_5706 70a5d87b3fb635d3899d69f0cffd8b62 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Y89_4934 d6ea4325e9c8a420afed33d8203f3704 252 Gene3D G3DSA:3.40.1390.30 16 237 1.5E-81 T 31-10-2018 Y89_4934 d6ea4325e9c8a420afed33d8203f3704 252 Gene3D G3DSA:3.40.1390.30 99 223 1.5E-81 T 31-10-2018 Y89_4934 d6ea4325e9c8a420afed33d8203f3704 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 12 240 1.1E-57 T 31-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y89_4934 d6ea4325e9c8a420afed33d8203f3704 252 SUPERFAMILY SSF102705 5 251 3.01E-79 T 31-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Y89_4934 d6ea4325e9c8a420afed33d8203f3704 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 6 251 1.0E-61 T 31-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Y89_1426 eae65437ed93f03f672c12b3ab00c495 50 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.3E-7 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1426 eae65437ed93f03f672c12b3ab00c495 50 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.637 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1426 eae65437ed93f03f672c12b3ab00c495 50 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1426 eae65437ed93f03f672c12b3ab00c495 50 Pfam PF00444 Ribosomal protein L36 1 41 1.2E-15 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_1426 eae65437ed93f03f672c12b3ab00c495 50 SUPERFAMILY SSF57840 1 41 3.92E-13 T 31-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 Pfam PF07715 TonB-dependent Receptor Plug Domain 150 268 9.3E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 SUPERFAMILY SSF56935 137 983 6.23E-95 T 31-10-2018 Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 SMART SM00965 64 114 8.3E-12 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 Gene3D G3DSA:3.55.50.30 43 111 2.7E-18 T 31-10-2018 Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 Pfam PF00593 TonB dependent receptor 422 981 2.5E-40 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 Pfam PF07660 Secretin and TonB N terminus short domain 66 113 4.2E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3218 be7b7d3ce8f82f8c2648759dd366f557 985 Gene3D G3DSA:2.170.130.10 131 272 3.9E-38 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4663 41fbb2445913534d0786e5a123fd973f 249 Pfam PF14348 Domain of unknown function (DUF4400) 51 246 3.6E-73 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_4663 41fbb2445913534d0786e5a123fd973f 249 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 15 249 7.7E-99 T 31-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Y89_3014 2f4bd865ffdf6a0e5b35adde2466b368 469 PRINTS PR01806 Virulence factor MviN signature 50 66 3.3E-10 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_3014 2f4bd865ffdf6a0e5b35adde2466b368 469 PRINTS PR01806 Virulence factor MviN signature 248 274 3.3E-10 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_3014 2f4bd865ffdf6a0e5b35adde2466b368 469 PRINTS PR01806 Virulence factor MviN signature 419 436 3.3E-10 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_3014 2f4bd865ffdf6a0e5b35adde2466b368 469 PRINTS PR01806 Virulence factor MviN signature 31 50 3.3E-10 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_3014 2f4bd865ffdf6a0e5b35adde2466b368 469 Pfam PF03023 MviN-like protein 30 442 7.1E-42 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Y89_2366 d384145c740d3245e43c8258ce16513c 311 Gene3D G3DSA:2.60.120.1440 98 229 3.1E-17 T 31-10-2018 Y89_2366 d384145c740d3245e43c8258ce16513c 311 Pfam PF16220 Domain of unknown function (DUF4880) 9 51 7.1E-14 T 31-10-2018 IPR032623 FecR, N-terminal Y89_2366 d384145c740d3245e43c8258ce16513c 311 PIRSF PIRSF018266 2 310 7.7E-86 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_2366 d384145c740d3245e43c8258ce16513c 311 Pfam PF04773 FecR protein 108 196 7.1E-17 T 31-10-2018 IPR006860 FecR protein Y89_5881 71bc0b6d361aff6082b568f7dc3bff33 267 SUPERFAMILY SSF48317 13 228 6.93E-11 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Y89_5881 71bc0b6d361aff6082b568f7dc3bff33 267 Pfam PF01569 PAP2 superfamily 146 225 1.2E-12 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_5881 71bc0b6d361aff6082b568f7dc3bff33 267 Gene3D G3DSA:1.20.144.10 12 238 1.4E-6 T 31-10-2018 Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 SUPERFAMILY SSF47741 83 152 6.28E-29 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 Gene3D G3DSA:3.10.20.30 1 77 3.8E-25 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 Pfam PF01799 [2Fe-2S] binding domain 72 144 4.2E-25 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 Gene3D G3DSA:1.10.150.120 78 156 1.9E-25 T 31-10-2018 Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 SUPERFAMILY SSF54292 2 76 1.19E-25 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 5.6E-7 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_2820 f71e2e452636b9a70316f80f5d18ca3e 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_1112 d74b6dfc87ccd86873a03d9d402137c2 171 PIRSF PIRSF025550 1 171 2.2E-68 T 31-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT Y89_1112 d74b6dfc87ccd86873a03d9d402137c2 171 Pfam PF02036 SCP-2 sterol transfer family 38 131 1.1E-14 T 31-10-2018 IPR003033 SCP2 sterol-binding domain Y89_1112 d74b6dfc87ccd86873a03d9d402137c2 171 Gene3D G3DSA:3.30.1050.10 57 135 1.9E-5 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_1112 d74b6dfc87ccd86873a03d9d402137c2 171 SUPERFAMILY SSF55718 42 135 3.06E-17 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_0929 33151c02a44e932a74d3c3e20c1c5d54 177 Gene3D G3DSA:2.60.120.10 25 177 4.2E-49 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0929 33151c02a44e932a74d3c3e20c1c5d54 177 SUPERFAMILY SSF51182 36 159 1.39E-22 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0929 33151c02a44e932a74d3c3e20c1c5d54 177 Pfam PF07883 Cupin domain 75 131 4.2E-7 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_1367 d6004517a3301a3b37282246eba2605e 402 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 398 9.2E-202 T 31-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 Y89_1367 d6004517a3301a3b37282246eba2605e 402 Gene3D G3DSA:3.90.1150.10 13 387 3.4E-115 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1367 d6004517a3301a3b37282246eba2605e 402 Gene3D G3DSA:3.40.640.10 43 296 3.4E-115 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_1367 d6004517a3301a3b37282246eba2605e 402 SUPERFAMILY SSF53383 2 400 3.44E-88 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_1367 d6004517a3301a3b37282246eba2605e 402 Pfam PF00155 Aminotransferase class I and II 32 380 1.3E-43 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_3168 b28bded185a955b3c15cde2931de781b 75 Gene3D G3DSA:2.40.160.10 20 55 6.1E-8 T 31-10-2018 IPR023614 Porin domain superfamily Y89_3168 b28bded185a955b3c15cde2931de781b 75 Pfam PF03573 outer membrane porin, OprD family 26 51 7.8E-6 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_3240 7ef4ca31ce2679b245e9ff81c02285f8 246 PIRSF PIRSF028589 2 244 9.7E-41 T 31-10-2018 IPR016893 Protein of unknown function UCP028589 Y89_5506 421143ddc3089cc5e937669ab75d736a 708 Gene3D G3DSA:2.40.170.20 172 708 1.4E-146 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_5506 421143ddc3089cc5e937669ab75d736a 708 Gene3D G3DSA:2.170.130.10 39 171 6.0E-34 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_5506 421143ddc3089cc5e937669ab75d736a 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 707 4.8E-114 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_5506 421143ddc3089cc5e937669ab75d736a 708 SUPERFAMILY SSF56935 22 708 6.23E-140 T 31-10-2018 Y89_5506 421143ddc3089cc5e937669ab75d736a 708 Pfam PF00593 TonB dependent receptor 236 706 4.0E-72 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_5506 421143ddc3089cc5e937669ab75d736a 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 163 3.3E-16 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0222 7af04b0c8669bffe4e5d7bb171b16d3d 134 Pfam PF03817 Malonate transporter MadL subunit 1 117 2.8E-50 T 31-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 Y89_0222 7af04b0c8669bffe4e5d7bb171b16d3d 134 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 120 2.2E-46 T 31-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 Y89_4091 70919ce890f4d0689961d2326772737a 273 Gene3D G3DSA:3.40.190.10 120 224 8.1E-53 T 31-10-2018 Y89_4091 70919ce890f4d0689961d2326772737a 273 SMART SM00062 36 262 2.1E-44 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_4091 70919ce890f4d0689961d2326772737a 273 SUPERFAMILY SSF53850 8 261 2.06E-57 T 31-10-2018 Y89_4091 70919ce890f4d0689961d2326772737a 273 Gene3D G3DSA:3.40.190.10 34 258 8.1E-53 T 31-10-2018 Y89_4091 70919ce890f4d0689961d2326772737a 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 260 3.8E-48 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_6210 3c053cdb9414d0702265aa08eee9fd66 254 Pfam PF03741 Integral membrane protein TerC family 14 204 4.2E-51 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y89_3192 da855b455e6a2eed66232f3126b93067 158 Gene3D G3DSA:3.30.70.920 56 138 3.2E-23 T 31-10-2018 Y89_3192 da855b455e6a2eed66232f3126b93067 158 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 3.6E-22 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Y89_3192 da855b455e6a2eed66232f3126b93067 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 5.2E-19 T 31-10-2018 Y89_3192 da855b455e6a2eed66232f3126b93067 158 SUPERFAMILY SSF54909 65 146 5.77E-19 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3192 da855b455e6a2eed66232f3126b93067 158 SUPERFAMILY SSF46785 2 62 3.95E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3192 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.6E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3192 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.6E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3192 da855b455e6a2eed66232f3126b93067 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.6E-15 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Y89_3192 da855b455e6a2eed66232f3126b93067 158 Gene3D G3DSA:1.10.10.10 4 54 2.7E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3192 da855b455e6a2eed66232f3126b93067 158 SMART SM00344 3 112 3.1E-42 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Y89_1956 618be92c2596fee314203b7e69d24520 1193 Gene3D G3DSA:1.25.40.10 362 522 9.9E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1956 618be92c2596fee314203b7e69d24520 1193 Pfam PF14559 Tetratricopeptide repeat 61 100 9.9E-6 T 31-10-2018 Y89_1956 618be92c2596fee314203b7e69d24520 1193 Pfam PF13429 Tetratricopeptide repeat 448 727 6.6E-92 T 31-10-2018 Y89_1956 618be92c2596fee314203b7e69d24520 1193 Gene3D G3DSA:1.25.40.10 252 352 2.7E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1956 618be92c2596fee314203b7e69d24520 1193 SUPERFAMILY SSF48452 587 724 2.09E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1956 618be92c2596fee314203b7e69d24520 1193 SUPERFAMILY SSF48452 61 348 1.29E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1956 618be92c2596fee314203b7e69d24520 1193 Gene3D G3DSA:1.25.40.10 532 850 9.2E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3858 327b7cf53491387287d7ed280d7ac94c 180 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_3858 327b7cf53491387287d7ed280d7ac94c 180 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 171 6.1E-57 T 31-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 Y89_3858 327b7cf53491387287d7ed280d7ac94c 180 Pfam PF08534 Redoxin 37 160 1.6E-20 T 31-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Y89_3858 327b7cf53491387287d7ed280d7ac94c 180 SUPERFAMILY SSF52833 41 173 5.27E-38 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3858 327b7cf53491387287d7ed280d7ac94c 180 Gene3D G3DSA:3.40.30.10 24 180 1.0E-50 T 31-10-2018 Y89_2729 be16425c108c8947e5db8c423fe6d24b 448 Pfam PF07690 Major Facilitator Superfamily 33 343 1.9E-40 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2729 be16425c108c8947e5db8c423fe6d24b 448 SUPERFAMILY SSF103473 1 442 2.09E-78 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2729 be16425c108c8947e5db8c423fe6d24b 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_2729 be16425c108c8947e5db8c423fe6d24b 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_1553 a47b1f541044c43025b40546271a2580 221 Hamap MF_01584 UPF0502 protein YceH [yceH]. 14 219 30.28 T 31-10-2018 IPR007432 Protein of unknown function DUF480 Y89_1553 a47b1f541044c43025b40546271a2580 221 Pfam PF04337 Protein of unknown function, DUF480 14 158 2.8E-55 T 31-10-2018 IPR007432 Protein of unknown function DUF480 Y89_1553 a47b1f541044c43025b40546271a2580 221 SUPERFAMILY SSF46785 13 90 1.34E-30 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1553 a47b1f541044c43025b40546271a2580 221 Gene3D G3DSA:1.10.10.10 98 175 6.4E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1553 a47b1f541044c43025b40546271a2580 221 SUPERFAMILY SSF46785 95 174 2.68E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1553 a47b1f541044c43025b40546271a2580 221 Gene3D G3DSA:1.10.10.10 1 97 9.7E-38 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_6200 b8775cb1a8677ba400ef0a6e38c670bb 278 Gene3D G3DSA:3.40.50.150 32 276 3.5E-32 T 31-10-2018 Y89_6200 b8775cb1a8677ba400ef0a6e38c670bb 278 Pfam PF08241 Methyltransferase domain 64 158 1.5E-17 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_6200 b8775cb1a8677ba400ef0a6e38c670bb 278 SUPERFAMILY SSF53335 49 229 4.56E-34 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 Pfam PF00082 Subtilase family 289 622 9.3E-37 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 PRINTS PR00723 Subtilisin serine protease family (S8) signature 324 337 1.1E-5 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 PRINTS PR00723 Subtilisin serine protease family (S8) signature 285 304 1.1E-5 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 PRINTS PR00723 Subtilisin serine protease family (S8) signature 556 572 1.1E-5 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 SUPERFAMILY SSF52743 270 637 1.02E-36 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_4718 0e9493ce04a0900c5862bab7272c47ca 836 Gene3D G3DSA:3.40.50.200 283 631 2.2E-29 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_4488 d07aa676f487e0816ac013c933847283 118 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 111 22.135 T 31-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Y89_4488 d07aa676f487e0816ac013c933847283 118 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 19 110 8.5E-29 T 31-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Y89_4488 d07aa676f487e0816ac013c933847283 118 Gene3D G3DSA:3.30.1360.20 18 117 1.2E-30 T 31-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Y89_4488 d07aa676f487e0816ac013c933847283 118 SUPERFAMILY SSF55248 16 112 1.7E-33 T 31-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Y89_5509 6be6b54749d07984f83a9a7f58613370 123 SUPERFAMILY SSF55159 13 120 1.15E-27 T 31-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 Y89_5509 6be6b54749d07984f83a9a7f58613370 123 Pfam PF01253 Translation initiation factor SUI1 49 117 2.7E-16 T 31-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 Y89_5509 6be6b54749d07984f83a9a7f58613370 123 PIRSF PIRSF037511 1 123 6.0E-44 T 31-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 Y89_5509 6be6b54749d07984f83a9a7f58613370 123 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 14 123 9.5E-38 T 31-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 Y89_5509 6be6b54749d07984f83a9a7f58613370 123 Gene3D G3DSA:3.30.780.10 43 123 1.3E-27 T 31-10-2018 Y89_2425 795d9e4e833292b3dba2844f802251f4 397 Pfam PF05940 NnrS protein 14 391 1.8E-112 T 31-10-2018 IPR010266 NnrS Y89_3461 85e4fd15bdfc0c7c87f26707322a1709 559 Gene3D G3DSA:3.40.1350.10 489 559 1.5E-7 T 31-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Y89_3461 85e4fd15bdfc0c7c87f26707322a1709 559 Pfam PF08774 VRR-NUC domain 443 555 4.8E-33 T 31-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Y89_3461 85e4fd15bdfc0c7c87f26707322a1709 559 SMART SM00990 441 555 1.2E-48 T 31-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Y89_6395 4aea5622c08fcf6130b892d079cb2c90 501 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 5 490 5.4E-190 T 31-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 227 2.4E-64 T 31-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 8 232 41.354 T 31-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 108 115 - T 31-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 230 5.0E-76 T 31-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 Gene3D G3DSA:3.90.550.10 7 233 7.2E-69 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1393 3ed5656cd1a3bf169d767ca13b889b71 234 SUPERFAMILY SSF53448 10 230 5.18E-55 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5812 d115299fa9442ae24ea8a295734fe41e 256 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 256 49.365 T 31-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Y89_5812 d115299fa9442ae24ea8a295734fe41e 256 SUPERFAMILY SSF51366 3 256 2.67E-84 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Y89_5812 d115299fa9442ae24ea8a295734fe41e 256 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 256 1.9E-117 T 31-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Y89_5812 d115299fa9442ae24ea8a295734fe41e 256 Gene3D G3DSA:3.20.20.70 1 256 2.7E-111 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5812 d115299fa9442ae24ea8a295734fe41e 256 Pfam PF00977 Histidine biosynthesis protein 6 240 1.3E-92 T 31-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Y89_1329 76fa3ddb33517a56549782d01c98fc13 431 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 21 412 3.9E-131 T 31-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA Y89_1329 76fa3ddb33517a56549782d01c98fc13 431 Pfam PF08014 Domain of unknown function (DUF1704) 42 416 3.1E-133 T 31-10-2018 IPR012548 Protein of unknown function DUF1704 Y89_1329 76fa3ddb33517a56549782d01c98fc13 431 SMART SM01154 41 419 8.4E-183 T 31-10-2018 IPR012548 Protein of unknown function DUF1704 Y89_3443 507b335de04ca5c3e6bf9b1010eecac4 107 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.4E-29 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_3443 507b335de04ca5c3e6bf9b1010eecac4 107 Gene3D G3DSA:1.10.3730.20 1 106 9.5E-34 T 31-10-2018 Y89_3443 507b335de04ca5c3e6bf9b1010eecac4 107 SUPERFAMILY SSF103481 4 104 2.48E-22 T 31-10-2018 Y89_5003 9a92573a542920af06edcd86281fb288 600 Pfam PF00884 Sulfatase 239 529 3.0E-49 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_5003 9a92573a542920af06edcd86281fb288 600 Pfam PF08019 Domain of unknown function (DUF1705) 55 178 2.4E-6 T 31-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y89_5003 9a92573a542920af06edcd86281fb288 600 SUPERFAMILY SSF53649 237 533 2.06E-31 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_5003 9a92573a542920af06edcd86281fb288 600 Gene3D G3DSA:3.40.720.10 227 562 3.4E-71 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_2668 b0e3da433a79149174301a1d612c1814 472 Gene3D G3DSA:1.10.287.130 199 315 5.9E-21 T 31-10-2018 Y89_2668 b0e3da433a79149174301a1d612c1814 472 Gene3D G3DSA:3.30.565.10 323 470 7.3E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2668 b0e3da433a79149174301a1d612c1814 472 Pfam PF00672 HAMP domain 195 244 3.7E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2668 b0e3da433a79149174301a1d612c1814 472 SUPERFAMILY SSF47384 232 314 1.26E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_2668 b0e3da433a79149174301a1d612c1814 472 SMART SM00304 195 248 1.5E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2668 b0e3da433a79149174301a1d612c1814 472 SUPERFAMILY SSF55874 305 467 5.24E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_2668 b0e3da433a79149174301a1d612c1814 472 SMART SM00387 358 470 2.0E-35 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_2668 b0e3da433a79149174301a1d612c1814 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 313 1.0E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2668 b0e3da433a79149174301a1d612c1814 472 SUPERFAMILY SSF158472 198 245 4.84E-7 T 31-10-2018 Y89_2668 b0e3da433a79149174301a1d612c1814 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 9.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2668 b0e3da433a79149174301a1d612c1814 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 9.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2668 b0e3da433a79149174301a1d612c1814 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 9.5E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_2668 b0e3da433a79149174301a1d612c1814 472 SMART SM00388 249 315 2.4E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_2668 b0e3da433a79149174301a1d612c1814 472 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 5 467 1.0E-179 T 31-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Y89_2668 b0e3da433a79149174301a1d612c1814 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 467 5.4E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_1157 f9ae76e3ae06af0de3d5c2935eb3f190 182 Pfam PF00174 Oxidoreductase molybdopterin binding domain 31 173 2.1E-13 T 31-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y89_1157 f9ae76e3ae06af0de3d5c2935eb3f190 182 SUPERFAMILY SSF56524 29 175 5.76E-20 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_1157 f9ae76e3ae06af0de3d5c2935eb3f190 182 Gene3D G3DSA:3.90.420.10 20 177 1.5E-14 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_2452 6eae156846d8cb4911a2765465635a3d 171 Pfam PF14539 Domain of unknown function (DUF4442) 24 159 9.0E-34 T 31-10-2018 IPR027961 Protein of unknown function DUF4442 Y89_2452 6eae156846d8cb4911a2765465635a3d 171 Gene3D G3DSA:3.10.129.10 11 161 3.7E-39 T 31-10-2018 Y89_2452 6eae156846d8cb4911a2765465635a3d 171 SUPERFAMILY SSF54637 26 163 7.46E-20 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 Pfam PF02321 Outer membrane efflux protein 75 267 1.5E-19 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 Pfam PF02321 Outer membrane efflux protein 293 478 3.7E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 SUPERFAMILY SSF56954 16 480 2.88E-95 T 31-10-2018 Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 Gene3D G3DSA:2.20.200.10 112 369 9.8E-109 T 31-10-2018 Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 Gene3D G3DSA:1.20.1600.10 65 480 9.8E-109 T 31-10-2018 Y89_1129 23aff7b5440dc518e5b03225949aed5b 506 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 23 480 1.7E-112 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_0333 94398c5607dac139baba3951eb548f12 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 119 7.5E-31 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_0333 94398c5607dac139baba3951eb548f12 230 SUPERFAMILY SSF161098 22 213 3.4E-44 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0333 94398c5607dac139baba3951eb548f12 230 Gene3D G3DSA:1.10.3720.10 16 226 7.4E-52 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0333 94398c5607dac139baba3951eb548f12 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 225 1.9E-17 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4155 47674485e4c1aaba9aea893514f40713 203 Pfam PF00877 NlpC/P60 family 80 188 9.2E-30 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y89_4155 47674485e4c1aaba9aea893514f40713 203 Gene3D G3DSA:3.90.1720.10 17 189 4.5E-43 T 31-10-2018 Y89_4155 47674485e4c1aaba9aea893514f40713 203 SUPERFAMILY SSF54001 64 191 2.06E-39 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_2506 feab23239b9e2176e9e0146a2b409013 83 Gene3D G3DSA:3.40.1620.10 1 40 6.9E-25 T 31-10-2018 Y89_2506 feab23239b9e2176e9e0146a2b409013 83 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 56 2.0E-11 T 31-10-2018 Y89_2506 feab23239b9e2176e9e0146a2b409013 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 73 4.2E-23 T 31-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Y89_2506 feab23239b9e2176e9e0146a2b409013 83 SUPERFAMILY SSF143120 1 81 6.41E-25 T 31-10-2018 IPR036165 YefM-like superfamily Y89_2506 feab23239b9e2176e9e0146a2b409013 83 Gene3D G3DSA:1.10.1220.170 41 83 2.7E-17 T 31-10-2018 Y89_2939 e807becf47f2f7980221ac30b4f83b87 391 SUPERFAMILY SSF56601 13 385 1.07E-88 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_2939 e807becf47f2f7980221ac30b4f83b87 391 Pfam PF00144 Beta-lactamase 16 376 1.7E-70 T 31-10-2018 IPR001466 Beta-lactamase-related Y89_2939 e807becf47f2f7980221ac30b4f83b87 391 Gene3D G3DSA:3.40.710.10 10 387 6.4E-108 T 31-10-2018 Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 Pfam PF08238 Sel1 repeat 61 96 6.2E-9 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 Pfam PF08238 Sel1 repeat 97 128 5.8E-4 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 Gene3D G3DSA:1.25.40.10 28 161 1.1E-31 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 SMART SM00671 61 96 3.5E-9 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 SMART SM00671 97 132 1.0E-6 T 31-10-2018 IPR006597 Sel1-like repeat Y89_1044 c3e16461332868e5c06d72f0e985b33f 182 SUPERFAMILY SSF81901 34 135 4.84E-22 T 31-10-2018 Y89_2778 5de77a80b46d973d5e375d05cb1f6084 306 Pfam PF13557 Putative MetA-pathway of phenol degradation 57 302 5.2E-61 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 45 982 19.837 T 31-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81593 840 979 1.02E-28 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:3.30.460.100 586 836 3.7E-87 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:3.30.460.100 57 300 1.9E-79 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.20.120.330 305 460 1.5E-52 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81301 549 840 9.48E-83 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81301 29 306 5.07E-88 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.20.120.1510 473 585 3.1E-33 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Gene3D G3DSA:1.20.120.330 837 980 2.7E-48 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 SUPERFAMILY SSF81593 307 456 1.18E-41 T 31-10-2018 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF08335 GlnD PII-uridylyltransferase 317 456 2.8E-44 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF08335 GlnD PII-uridylyltransferase 852 955 2.8E-12 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 577 830 1.2E-93 T 31-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Y89_5686 e1f3b85ed284b3721d2089434a2dc0e5 982 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 48 296 5.4E-98 T 31-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Y89_3328 15e6a4380bda7d9de21c4c092a31727f 118 Gene3D G3DSA:3.90.1150.30 1 117 1.4E-16 T 31-10-2018 IPR038056 YjbR-like superfamily Y89_3328 15e6a4380bda7d9de21c4c092a31727f 118 Pfam PF04237 YjbR 11 101 1.4E-13 T 31-10-2018 IPR007351 Uncharacterised protein YjbR Y89_3328 15e6a4380bda7d9de21c4c092a31727f 118 SUPERFAMILY SSF142906 1 114 1.03E-28 T 31-10-2018 IPR038056 YjbR-like superfamily Y89_4043 106cfaec7969c6f80029b25f3a08d723 257 Gene3D G3DSA:3.60.20.10 1 257 3.9E-107 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4043 106cfaec7969c6f80029b25f3a08d723 257 Pfam PF13230 Glutamine amidotransferases class-II 1 254 7.0E-107 T 31-10-2018 IPR026869 Putative glutamine amidotransferase type 2 Y89_4043 106cfaec7969c6f80029b25f3a08d723 257 SUPERFAMILY SSF56235 2 251 8.93E-49 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_2110 ed4ceb61c0c383812f4fb38b06816b2a 257 Gene3D G3DSA:3.40.50.300 10 249 6.7E-68 T 31-10-2018 Y89_2110 ed4ceb61c0c383812f4fb38b06816b2a 257 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_2110 ed4ceb61c0c383812f4fb38b06816b2a 257 SUPERFAMILY SSF52540 11 228 2.46E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2110 ed4ceb61c0c383812f4fb38b06816b2a 257 Pfam PF00005 ABC transporter 20 169 2.6E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2110 ed4ceb61c0c383812f4fb38b06816b2a 257 SMART SM00382 29 213 1.3E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2460 2cc39635d965a1b598a7e881db64ed71 296 Pfam PF00892 EamA-like transporter family 17 147 8.5E-20 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2460 2cc39635d965a1b598a7e881db64ed71 296 Pfam PF00892 EamA-like transporter family 158 283 1.9E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_2460 2cc39635d965a1b598a7e881db64ed71 296 SUPERFAMILY SSF103481 190 290 6.41E-13 T 31-10-2018 Y89_2460 2cc39635d965a1b598a7e881db64ed71 296 SUPERFAMILY SSF103481 50 151 3.14E-17 T 31-10-2018 Y89_3542 d1252851a5fd1f493591458c1e3812a6 203 SUPERFAMILY SSF47240 2 199 4.56E-76 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_3542 d1252851a5fd1f493591458c1e3812a6 203 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 1 51 8.5E-18 T 31-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y89_3542 d1252851a5fd1f493591458c1e3812a6 203 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 53 195 9.6E-70 T 31-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y89_3542 d1252851a5fd1f493591458c1e3812a6 203 PIRSF PIRSF020736 1 200 2.9E-90 T 31-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 Y89_3542 d1252851a5fd1f493591458c1e3812a6 203 Gene3D G3DSA:1.20.1260.10 1 203 7.7E-86 T 31-10-2018 IPR012347 Ferritin-like Y89_2831 3301ebd339d7be2a0320877dcf981310 597 Pfam PF05947 Type VI secretion system, TssF 10 593 2.3E-184 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_2831 3301ebd339d7be2a0320877dcf981310 597 PIRSF PIRSF028304 5 596 1.3E-186 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_2831 3301ebd339d7be2a0320877dcf981310 597 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 9 593 4.9E-183 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like Y89_0200 47c84e776d6711407da160fab4e002bc 293 Pfam PF03547 Membrane transport protein 149 287 3.9E-11 T 31-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Y89_4153 4fbcf690082afaae37baf0efa3cd7204 220 Pfam PF01596 O-methyltransferase 22 219 1.3E-62 T 31-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 Y89_4153 4fbcf690082afaae37baf0efa3cd7204 220 Gene3D G3DSA:3.40.50.150 1 220 1.0E-75 T 31-10-2018 Y89_4153 4fbcf690082afaae37baf0efa3cd7204 220 SUPERFAMILY SSF53335 8 220 5.19E-47 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 Gene3D G3DSA:2.40.280.10 4 132 2.5E-47 T 31-10-2018 IPR023620 Small protein B Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 31-10-2018 IPR020081 SsrA-binding protein, conserved site Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 12 136 4.0E-68 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 SUPERFAMILY SSF74982 5 136 1.22E-50 T 31-10-2018 IPR023620 Small protein B Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 154 2.0E-52 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 Pfam PF01668 SmpB protein 12 154 1.9E-58 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 Y89_5380 b565538431fb1b23d020d29b8090d5c0 159 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 71.799 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 Y89_0868 cad7219e7a641ef9da46dadcb49fec4e 222 SMART SM00287 41 104 6.4E-7 T 31-10-2018 IPR003646 SH3-like domain, bacterial-type Y89_0868 cad7219e7a641ef9da46dadcb49fec4e 222 Pfam PF08239 Bacterial SH3 domain 53 101 2.5E-10 T 31-10-2018 IPR003646 SH3-like domain, bacterial-type Y89_0868 cad7219e7a641ef9da46dadcb49fec4e 222 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 45 221 1.7E-42 T 31-10-2018 IPR016476 SH3 domain protein Y89_0868 cad7219e7a641ef9da46dadcb49fec4e 222 PIRSF PIRSF006158 15 222 6.8E-75 T 31-10-2018 IPR016476 SH3 domain protein Y89_0868 cad7219e7a641ef9da46dadcb49fec4e 222 Gene3D G3DSA:2.30.30.40 46 101 2.1E-9 T 31-10-2018 Y89_5507 571bf984f1241dec249515c07f2fc35f 384 Pfam PF07786 Protein of unknown function (DUF1624) 10 218 3.9E-16 T 31-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 SMART SM00829 20 332 2.2E-6 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 Pfam PF00107 Zinc-binding dehydrogenase 159 292 1.1E-20 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 Gene3D G3DSA:3.90.180.10 21 331 5.2E-150 T 31-10-2018 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 Pfam PF16884 N-terminal domain of oxidoreductase 7 114 4.6E-38 T 31-10-2018 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 Gene3D G3DSA:3.40.50.720 127 303 5.2E-150 T 31-10-2018 Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 SUPERFAMILY SSF50129 5 144 2.92E-37 T 31-10-2018 IPR011032 GroES-like superfamily Y89_3686 c53e0c125d1fd767fd1c784afbe6705b 334 SUPERFAMILY SSF51735 125 299 2.67E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4950 470b791a202dc896224abba07a009687 175 Pfam PF03968 OstA-like protein 35 145 3.7E-26 T 31-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Y89_4950 470b791a202dc896224abba07a009687 175 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 24 171 1.9E-46 T 31-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Y89_4950 470b791a202dc896224abba07a009687 175 Gene3D G3DSA:2.60.450.10 26 175 7.6E-56 T 31-10-2018 Y89_4950 470b791a202dc896224abba07a009687 175 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 2 171 23.831 T 31-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Y89_2168 1078828c5afc16a5c07e83aa83d22dd6 323 Pfam PF03734 L,D-transpeptidase catalytic domain 98 230 9.1E-16 T 31-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Y89_2168 1078828c5afc16a5c07e83aa83d22dd6 323 SUPERFAMILY SSF141523 96 230 4.32E-31 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Y89_2168 1078828c5afc16a5c07e83aa83d22dd6 323 Gene3D G3DSA:2.40.440.10 21 303 7.4E-95 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Y89_4481 ff86ee51016c3a1aa64d06425aa06eda 275 SUPERFAMILY SSF54637 58 147 6.34E-8 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4481 ff86ee51016c3a1aa64d06425aa06eda 275 Gene3D G3DSA:3.10.129.10 163 274 2.4E-12 T 31-10-2018 Y89_4481 ff86ee51016c3a1aa64d06425aa06eda 275 Pfam PF13452 N-terminal half of MaoC dehydratase 18 133 1.4E-8 T 31-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Y89_4481 ff86ee51016c3a1aa64d06425aa06eda 275 SUPERFAMILY SSF54637 168 260 1.61E-13 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4481 ff86ee51016c3a1aa64d06425aa06eda 275 Gene3D G3DSA:3.10.129.10 10 152 1.3E-12 T 31-10-2018 Y89_2759 e89ea74fa378bf206143f651d2fbe185 666 SUPERFAMILY SSF117892 431 540 7.85E-11 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_2759 e89ea74fa378bf206143f651d2fbe185 666 SMART SM00244 330 535 4.9E-4 T 31-10-2018 IPR001107 Band 7 domain Y89_2759 e89ea74fa378bf206143f651d2fbe185 666 Pfam PF01145 SPFH domain / Band 7 family 334 552 6.4E-38 T 31-10-2018 IPR001107 Band 7 domain Y89_2759 e89ea74fa378bf206143f651d2fbe185 666 Gene3D G3DSA:3.30.479.30 427 537 1.2E-5 T 31-10-2018 Y89_3215 de536d7e0997c9711b2456f9dd7787ac 338 SUPERFAMILY SSF161098 135 321 1.22E-17 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3215 de536d7e0997c9711b2456f9dd7787ac 338 Gene3D G3DSA:1.10.3720.10 130 334 9.2E-17 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3215 de536d7e0997c9711b2456f9dd7787ac 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 337 6.1E-26 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 1.8E-10 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 1.8E-10 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 1.8E-10 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 1.8E-10 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 SUPERFAMILY SSF51569 3 292 1.36E-85 T 31-10-2018 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 PIRSF PIRSF001365 1 293 9.9E-87 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 Pfam PF00701 Dihydrodipicolinate synthetase family 6 290 5.0E-55 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 Gene3D G3DSA:3.20.20.70 3 293 3.6E-111 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0230 d5f2e4437dda93659fe00e65570b1bcf 293 SMART SM01130 4 293 4.3E-99 T 31-10-2018 IPR002220 DapA-like GO:0016829 Y89_2746 73f488fcbf2e77ba6fa6c39626bf0d33 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 71 8.5E-19 T 31-10-2018 IPR010305 Protein of unknown function DUF903 Y89_2746 73f488fcbf2e77ba6fa6c39626bf0d33 73 Gene3D G3DSA:2.30.30.100 21 73 1.2E-17 T 31-10-2018 Y89_2746 73f488fcbf2e77ba6fa6c39626bf0d33 73 SUPERFAMILY SSF50182 22 72 2.62E-14 T 31-10-2018 IPR010920 LSM domain superfamily Y89_3717 98e3a7df1cd54e17d108eb16731ed703 163 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 94 5.2E-21 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_3717 98e3a7df1cd54e17d108eb16731ed703 163 SUPERFAMILY SSF54637 17 94 2.21E-16 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_3717 98e3a7df1cd54e17d108eb16731ed703 163 Gene3D G3DSA:3.10.129.10 1 103 7.6E-38 T 31-10-2018 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 SUPERFAMILY SSF103473 14 438 2.22E-79 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 Gene3D G3DSA:1.20.1250.20 19 234 1.3E-43 T 31-10-2018 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 84 100 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 Gene3D G3DSA:1.20.1250.20 260 441 8.3E-21 T 31-10-2018 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 13 412 5.0E-152 T 31-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 Y89_0242 ffc4a3dc51da6791dce08618c3b79e96 448 Pfam PF07690 Major Facilitator Superfamily 35 405 2.1E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 Pfam PF00083 Sugar (and other) transporter 21 217 7.2E-24 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 SUPERFAMILY SSF103473 12 424 6.15E-67 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 26 412 1.1E-138 T 31-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 Gene3D G3DSA:1.20.1250.20 16 431 8.8E-68 T 31-10-2018 Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 Pfam PF07690 Major Facilitator Superfamily 265 420 5.2E-12 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0236 4af661eebb95aedc764f9abd0bd49443 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5068 8f64e59d24187c466679092adea9f485 340 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 1 332 40.118 T 31-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y89_5068 8f64e59d24187c466679092adea9f485 340 Pfam PF04245 37-kD nucleoid-associated bacterial protein 7 326 5.6E-88 T 31-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y89_0460 6f69292a06de9c776097f5c0fb9c8bd4 423 Gene3D G3DSA:2.30.40.10 5 405 9.7E-178 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0460 6f69292a06de9c776097f5c0fb9c8bd4 423 SUPERFAMILY SSF51556 51 370 3.84E-104 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_0460 6f69292a06de9c776097f5c0fb9c8bd4 423 SUPERFAMILY SSF51338 17 406 2.02E-5 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0460 6f69292a06de9c776097f5c0fb9c8bd4 423 Pfam PF07969 Amidohydrolase family 42 398 1.4E-51 T 31-10-2018 IPR013108 Amidohydrolase 3 Y89_0460 6f69292a06de9c776097f5c0fb9c8bd4 423 Gene3D G3DSA:3.20.20.140 52 359 9.7E-178 T 31-10-2018 Y89_5849 7d3e5a6231832fa094ec1c479a87c4da 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 2.2E-162 T 31-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Y89_5849 7d3e5a6231832fa094ec1c479a87c4da 293 Gene3D G3DSA:3.90.550.10 1 293 3.9E-89 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5849 7d3e5a6231832fa094ec1c479a87c4da 293 Pfam PF00483 Nucleotidyl transferase 4 240 3.9E-70 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Y89_5849 7d3e5a6231832fa094ec1c479a87c4da 293 SUPERFAMILY SSF53448 1 288 5.2E-93 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1792 a277d51826afe704fc823b42547c885d 213 SUPERFAMILY SSF52218 1 199 3.67E-58 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1792 a277d51826afe704fc823b42547c885d 213 Pfam PF02525 Flavodoxin-like fold 3 198 2.8E-49 T 31-10-2018 IPR003680 Flavodoxin-like fold Y89_1792 a277d51826afe704fc823b42547c885d 213 Gene3D G3DSA:3.40.50.360 2 200 1.7E-63 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1792 a277d51826afe704fc823b42547c885d 213 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.655 T 31-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Y89_1106 83a2399823a67b4436489c0152ea6962 83 Gene3D G3DSA:3.10.20.30 1 83 4.6E-23 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_1106 83a2399823a67b4436489c0152ea6962 83 SUPERFAMILY SSF54285 1 83 8.97E-22 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Y89_1106 83a2399823a67b4436489c0152ea6962 83 Pfam PF02597 ThiS family 4 83 9.5E-19 T 31-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Y89_3888 b5096c47ac751cb44c10c4a3e1516fdd 450 Pfam PF04536 TPM domain 76 198 1.7E-37 T 31-10-2018 IPR007621 TPM domain Y89_3888 b5096c47ac751cb44c10c4a3e1516fdd 450 Gene3D G3DSA:3.10.310.50 64 206 3.2E-49 T 31-10-2018 Y89_1374 80c48b732a673690dbdea546eec447ea 251 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 237 5.1E-78 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y89_1374 80c48b732a673690dbdea546eec447ea 251 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 238 39.247 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y89_1374 80c48b732a673690dbdea546eec447ea 251 SUPERFAMILY SSF64005 10 233 2.75E-84 T 31-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Y89_1374 80c48b732a673690dbdea546eec447ea 251 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 237 6.5E-91 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Y89_1374 80c48b732a673690dbdea546eec447ea 251 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 183 200 - T 31-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 Y89_1374 80c48b732a673690dbdea546eec447ea 251 Gene3D G3DSA:3.40.1180.10 1 238 9.8E-93 T 31-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 SUPERFAMILY SSF53335 65 280 6.18E-46 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 285 1.1E-90 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 291 9.3E-100 T 31-10-2018 Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 PIRSF PIRSF000401 1 293 3.2E-90 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 Gene3D G3DSA:3.40.50.150 100 294 1.6E-59 T 31-10-2018 Y89_5519 215c7750bc49dd6bf1db903145ff833b 294 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 33.973 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Y89_2332 26351c182c76a6382f98a14532864d9d 268 SUPERFAMILY SSF51735 6 266 1.39E-77 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2332 26351c182c76a6382f98a14532864d9d 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_2332 26351c182c76a6382f98a14532864d9d 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 263 1.5E-55 T 31-10-2018 Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.8E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.8E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.8E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 248 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.1E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2332 26351c182c76a6382f98a14532864d9d 268 Gene3D G3DSA:3.40.50.720 1 267 1.7E-79 T 31-10-2018 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 Gene3D G3DSA:3.40.1500.10 1 301 8.9E-140 T 31-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 SUPERFAMILY SSF102886 4 301 1.1E-139 T 31-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 30 46 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 89 113 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 261 287 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 47 68 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 161 190 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 233 260 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PRINTS PR00073 Coprogen oxidase signature 124 146 5.1E-88 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 Pfam PF01218 Coproporphyrinogen III oxidase 8 301 1.8E-132 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 165 189 - T 31-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 PIRSF PIRSF000166 2 302 6.2E-128 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_0030 d226d3587c5bbc473501a64bcbf10269 305 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 276 56.337 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Y89_1805 dabac8a1ded9f3b106c2336baf59050b 484 PIRSF PIRSF006247 1 484 3.4E-168 T 31-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Y89_1805 dabac8a1ded9f3b106c2336baf59050b 484 Pfam PF02386 Cation transport protein 41 476 3.1E-56 T 31-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Y89_5946 3fbb99c45f8402b6d22f0072347eeede 412 Pfam PF07219 HemY protein N-terminus 27 131 1.2E-25 T 31-10-2018 IPR010817 HemY, N-terminal Y89_5946 3fbb99c45f8402b6d22f0072347eeede 412 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 5 393 4.8E-107 T 31-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 Y89_5946 3fbb99c45f8402b6d22f0072347eeede 412 Gene3D G3DSA:1.25.40.10 244 400 1.1E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5946 3fbb99c45f8402b6d22f0072347eeede 412 SUPERFAMILY SSF48452 92 365 4.67E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5946 3fbb99c45f8402b6d22f0072347eeede 412 Gene3D G3DSA:1.25.40.10 66 213 5.0E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 247 3.4E-63 T 31-10-2018 Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 Gene3D G3DSA:3.40.50.720 1 248 5.4E-83 T 31-10-2018 Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 SUPERFAMILY SSF51735 4 247 1.05E-76 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.8E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 9.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 9.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1891 6cc4395d5bf3a7e911d95e8da108d170 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1250 bc97d9ff6d041f596b3e6133b77d6ea9 459 Pfam PF02601 Exonuclease VII, large subunit 132 443 7.0E-100 T 31-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Y89_1250 bc97d9ff6d041f596b3e6133b77d6ea9 459 Pfam PF13742 OB-fold nucleic acid binding domain 16 108 2.7E-28 T 31-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Y89_1250 bc97d9ff6d041f596b3e6133b77d6ea9 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 446 31.882 T 31-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Y89_1250 bc97d9ff6d041f596b3e6133b77d6ea9 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 360 1.7E-131 T 31-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Y89_4100 abce77e181ade8d9569817c77496d928 541 SUPERFAMILY SSF58104 232 540 1.22E-73 T 31-10-2018 Y89_4100 abce77e181ade8d9569817c77496d928 541 SMART SM00304 212 264 2.0E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4100 abce77e181ade8d9569817c77496d928 541 SMART SM00304 267 317 72.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4100 abce77e181ade8d9569817c77496d928 541 SMART SM00283 279 540 6.4E-77 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4100 abce77e181ade8d9569817c77496d928 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 12 184 1.9E-20 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Y89_4100 abce77e181ade8d9569817c77496d928 541 Gene3D G3DSA:1.10.287.950 211 541 1.2E-71 T 31-10-2018 Y89_4100 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 8.5E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4100 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 8.5E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4100 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 8.5E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4100 abce77e181ade8d9569817c77496d928 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 8.5E-23 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4100 abce77e181ade8d9569817c77496d928 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 507 2.0E-42 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PIRSF PIRSF002764 1 222 5.5E-81 T 31-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Y89_3863 2d1127d86759c50c8778dd454dd89053 223 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 218 1.5E-86 T 31-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 5.9E-70 T 31-10-2018 Y89_3863 2d1127d86759c50c8778dd454dd89053 223 Pfam PF03379 CcmB protein 6 219 9.6E-84 T 31-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Y89_2199 b31b0365d98c5cd48a5616264d14906f 160 SUPERFAMILY SSF55781 19 153 4.17E-37 T 31-10-2018 Y89_2199 b31b0365d98c5cd48a5616264d14906f 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 97 114 - T 31-10-2018 IPR000614 Free Met sulfoxide reductase conserved site Y89_2199 b31b0365d98c5cd48a5616264d14906f 160 Gene3D G3DSA:3.30.450.40 12 159 3.0E-59 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2199 b31b0365d98c5cd48a5616264d14906f 160 Pfam PF13185 GAF domain 42 151 2.8E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 Pfam PF00589 Phage integrase family 111 277 1.1E-42 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 SUPERFAMILY SSF56349 104 289 3.83E-52 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 SUPERFAMILY SSF47823 4 96 3.92E-19 T 31-10-2018 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 291 57.932 T 31-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 Gene3D G3DSA:1.10.150.130 2 96 4.7E-20 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 88 3.6E-23 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 293 1.5E-109 T 31-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 Y89_5969 c51f5c3d605b833dfe5c601467fcf8f1 303 Gene3D G3DSA:1.10.443.10 109 285 1.2E-55 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Gene3D G3DSA:1.10.10.10 122 227 3.2E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.9E-23 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SMART SM00862 145 220 9.6E-23 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SUPERFAMILY SSF52172 1 176 1.13E-39 T 31-10-2018 IPR011006 CheY-like superfamily Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 3.4E-97 T 31-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Gene3D G3DSA:3.40.50.2300 1 121 7.0E-38 T 31-10-2018 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 Pfam PF00072 Response regulator receiver domain 3 111 8.5E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3902 0ca6c558d7c9b4ebf6f1d166ea7e28a4 229 SMART SM00448 1 111 2.3E-40 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_4787 4f04c44d66a718dbb743dc4d99feeb43 394 Gene3D G3DSA:3.40.50.300 149 373 5.9E-29 T 31-10-2018 Y89_4787 4f04c44d66a718dbb743dc4d99feeb43 394 Gene3D G3DSA:3.40.50.2300 1 130 2.0E-51 T 31-10-2018 Y89_4787 4f04c44d66a718dbb743dc4d99feeb43 394 SUPERFAMILY SSF52540 150 372 7.54E-16 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4787 4f04c44d66a718dbb743dc4d99feeb43 394 Pfam PF16968 Pilus assembly protein TadZ N-terminal 1 133 4.2E-87 T 31-10-2018 IPR031580 Pilus assembly protein TadZ, N-terminal Y89_0368 24f8f9cb71c7f66b322995104075a469 383 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 60 374 1.5E-50 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y89_0368 24f8f9cb71c7f66b322995104075a469 383 SUPERFAMILY SSF51695 55 380 8.89E-77 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_0368 24f8f9cb71c7f66b322995104075a469 383 Gene3D G3DSA:3.20.20.190 53 380 1.4E-113 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_6336 5b1750bee1d52ffb9f5d1dc60e5b7076 340 Pfam PF04245 37-kD nucleoid-associated bacterial protein 7 326 4.7E-84 T 31-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Y89_2134 dac1d76c08a73528bc74b4412bebbad7 538 Gene3D G3DSA:3.90.226.10 272 538 8.6E-94 T 31-10-2018 Y89_2134 dac1d76c08a73528bc74b4412bebbad7 538 Pfam PF01039 Carboxyl transferase domain 49 514 1.8E-115 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_2134 dac1d76c08a73528bc74b4412bebbad7 538 SUPERFAMILY SSF52096 277 535 2.13E-74 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2134 dac1d76c08a73528bc74b4412bebbad7 538 Gene3D G3DSA:3.90.226.10 1 271 5.4E-73 T 31-10-2018 Y89_2134 dac1d76c08a73528bc74b4412bebbad7 538 SUPERFAMILY SSF52096 33 269 2.85E-58 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_6051 c97d5d7f9c6aa00cdda317cac2bca48a 442 Gene3D G3DSA:3.40.640.10 62 343 7.5E-145 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_6051 c97d5d7f9c6aa00cdda317cac2bca48a 442 SUPERFAMILY SSF53383 1 439 4.41E-118 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_6051 c97d5d7f9c6aa00cdda317cac2bca48a 442 Gene3D G3DSA:3.90.1150.10 26 433 7.5E-145 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_6051 c97d5d7f9c6aa00cdda317cac2bca48a 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 288 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_6051 c97d5d7f9c6aa00cdda317cac2bca48a 442 Pfam PF00202 Aminotransferase class-III 28 438 2.4E-89 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0176 120eceadefab5d8ea320581a9441f195 538 Gene3D G3DSA:3.60.20.40 360 538 1.9E-63 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 Gene3D G3DSA:1.10.246.130 253 359 3.2E-24 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 357 375 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 114 132 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 237 253 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 412 427 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 45 70 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 132 151 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 399 1.7E-41 T 31-10-2018 Y89_0176 120eceadefab5d8ea320581a9441f195 538 SUPERFAMILY SSF56235 7 535 1.74E-174 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0176 120eceadefab5d8ea320581a9441f195 538 Pfam PF01019 Gamma-glutamyltranspeptidase 38 532 5.4E-159 T 31-10-2018 Y89_2509 d2b6f9320b5a3c4990a9210a20ac5b64 506 Pfam PF07916 TraG-like protein, N-terminal region 10 487 9.2E-92 T 31-10-2018 IPR012931 TraG-like, N-terminal Y89_0893 ba5da04e561b039d4c8813459d4ca84b 162 PIRSF PIRSF030820 1 162 4.5E-62 T 31-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y89_0893 ba5da04e561b039d4c8813459d4ca84b 162 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 159 1.1E-38 T 31-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Y89_2182 da1bf1d672d8ff3cbd35c891612406f0 256 PIRSF PIRSF006157 1 256 3.6E-92 T 31-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 Y89_2182 da1bf1d672d8ff3cbd35c891612406f0 256 Gene3D G3DSA:3.40.830.10 1 256 2.6E-89 T 31-10-2018 Y89_2182 da1bf1d672d8ff3cbd35c891612406f0 256 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 4 255 9.0E-50 T 31-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Y89_2182 da1bf1d672d8ff3cbd35c891612406f0 256 SUPERFAMILY SSF53213 1 256 1.83E-93 T 31-10-2018 Y89_3067 c5ca02056092b86024751095cdcdedd8 337 Gene3D G3DSA:3.40.718.10 1 336 4.0E-104 T 31-10-2018 Y89_3067 c5ca02056092b86024751095cdcdedd8 337 SUPERFAMILY SSF53659 7 334 6.67E-91 T 31-10-2018 Y89_3067 c5ca02056092b86024751095cdcdedd8 337 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 38 329 7.7E-82 T 31-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Y89_4341 c52e3e9693e8d19f13d83f5ad1776fff 128 SUPERFAMILY SSF50249 14 114 9.77E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4341 c52e3e9693e8d19f13d83f5ad1776fff 128 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 54 109 1.5E-11 T 31-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Y89_4341 c52e3e9693e8d19f13d83f5ad1776fff 128 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 20 53 7.0E-6 T 31-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Y89_3622 ab4bb66ba4e6b59e08e8847a478df64c 81 Gene3D G3DSA:3.30.1490.370 16 81 1.5E-38 T 31-10-2018 Y89_4154 f025f610712fe4a4e9baf75dba3b8a99 177 Pfam PF00877 NlpC/P60 family 56 164 7.1E-30 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Y89_4154 f025f610712fe4a4e9baf75dba3b8a99 177 Gene3D G3DSA:3.90.1720.10 10 164 9.3E-42 T 31-10-2018 Y89_4154 f025f610712fe4a4e9baf75dba3b8a99 177 SUPERFAMILY SSF54001 36 167 3.09E-40 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_6360 da6ce3a67a4c040a55916b6cc292be08 459 Pfam PF04917 Bacterial shufflon protein, N-terminal constant region 36 346 1.3E-83 T 31-10-2018 IPR007001 Bacterial shufflon protein, N-terminal Y89_6360 da6ce3a67a4c040a55916b6cc292be08 459 SUPERFAMILY SSF54523 13 72 2.98E-5 T 31-10-2018 Y89_3640 606446d6f0c9544df6251f26071fe830 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 6.2E-92 T 31-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 Y89_3640 606446d6f0c9544df6251f26071fe830 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 5.5E-69 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_3640 606446d6f0c9544df6251f26071fe830 217 Pfam PF00813 FliP family 14 211 2.0E-68 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Gene3D G3DSA:3.30.450.20 54 272 3.0E-74 T 31-10-2018 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Pfam PF02743 Cache domain 36 260 8.2E-32 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 594 4.9E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Gene3D G3DSA:1.10.287.950 298 629 1.7E-75 T 31-10-2018 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 SUPERFAMILY SSF58104 320 629 8.11E-76 T 31-10-2018 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Pfam PF00672 HAMP domain 298 349 8.6E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 SMART SM00283 367 628 2.1E-99 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 Gene3D G3DSA:3.30.450.20 66 174 3.0E-74 T 31-10-2018 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 494 523 2.2E-9 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 381 410 2.2E-9 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 SUPERFAMILY SSF103190 91 184 2.43E-14 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 SMART SM00304 298 352 5.8E-15 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4793 75cf5902727022e73fbf7c7668fa1a02 629 SMART SM00304 387 447 18.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 SUPERFAMILY SSF48008 82 215 6.54E-28 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 6.6E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 Pfam PF07729 FCD domain 85 204 2.5E-28 T 31-10-2018 IPR011711 GntR, C-terminal Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 SMART SM00345 17 75 3.9E-14 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 Gene3D G3DSA:1.20.120.530 81 220 4.2E-34 T 31-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 SMART SM00895 85 206 1.2E-19 T 31-10-2018 IPR011711 GntR, C-terminal Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 SUPERFAMILY SSF46785 12 79 8.52E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4081 c82a2f4ba468e9064c84879687a3f47b 222 Gene3D G3DSA:1.10.10.10 11 76 4.1E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3350 2f03dc354fe7adc8d116d8e985c37f97 399 SUPERFAMILY SSF56935 34 398 3.66E-28 T 31-10-2018 Y89_3350 2f03dc354fe7adc8d116d8e985c37f97 399 Gene3D G3DSA:2.40.160.10 46 398 9.4E-12 T 31-10-2018 IPR023614 Porin domain superfamily Y89_3350 2f03dc354fe7adc8d116d8e985c37f97 399 Pfam PF13609 Gram-negative porin 27 378 2.7E-24 T 31-10-2018 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 Gene3D G3DSA:1.10.490.80 606 704 1.1E-32 T 31-10-2018 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PIRSF PIRSF005419 3 706 6.1E-262 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 Gene3D G3DSA:1.10.8.540 516 604 4.0E-32 T 31-10-2018 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 137 160 - T 31-10-2018 IPR025505 FHIPEP conserved site Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 Pfam PF00771 FHIPEP family 26 696 1.5E-238 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 232 246 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 151 169 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 33 46 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 132 148 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 181 198 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 70 89 3.8E-58 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 Gene3D G3DSA:3.40.30.60 370 515 3.0E-35 T 31-10-2018 Y89_3630 105ddee45d06fbc689ce70577ef7a43b 706 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 14 704 4.7E-298 T 31-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 Y89_4782 cc0b087cbee4c7e20e5234f83da86a54 94 Pfam PF12266 Protein of unknown function (DUF3613) 21 87 1.9E-30 T 31-10-2018 IPR022053 Protein of unknown function DUF3613 Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 Pfam PF00106 short chain dehydrogenase 6 196 4.2E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 Gene3D G3DSA:3.40.50.720 1 274 1.4E-71 T 31-10-2018 Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.8E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.8E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.8E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.8E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.8E-15 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 SUPERFAMILY SSF51735 1 240 9.34E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2130 75aeb2c82f7c39bb7cab825c0fa0a062 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1417 c6038ae8eff90cfc980fcec93f76d070 256 SUPERFAMILY SSF161098 3 249 1.12E-55 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1417 c6038ae8eff90cfc980fcec93f76d070 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 245 7.7E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1417 c6038ae8eff90cfc980fcec93f76d070 256 Gene3D G3DSA:1.10.3720.10 3 251 1.2E-49 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 Gene3D G3DSA:3.40.190.290 91 292 3.3E-73 T 31-10-2018 Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 Gene3D G3DSA:1.10.10.10 3 90 7.3E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 SUPERFAMILY SSF53850 89 294 3.41E-47 T 31-10-2018 Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 Pfam PF03466 LysR substrate binding domain 88 292 1.2E-43 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 SUPERFAMILY SSF46785 4 85 4.14E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2145 fb689b41eeb526df4c31e549b76f07bb 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.0E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_6063 2d0dff64aae05759e5ce7ec95cd373ee 316 Pfam PF13557 Putative MetA-pathway of phenol degradation 76 310 7.8E-58 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Y89_2499 ae97f3b0dcf9047d492bfb8c932a515c 404 Gene3D G3DSA:1.20.1250.20 11 197 8.1E-22 T 31-10-2018 Y89_2499 ae97f3b0dcf9047d492bfb8c932a515c 404 Pfam PF07690 Major Facilitator Superfamily 28 362 1.2E-37 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2499 ae97f3b0dcf9047d492bfb8c932a515c 404 SUPERFAMILY SSF103473 17 402 7.72E-49 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2499 ae97f3b0dcf9047d492bfb8c932a515c 404 Gene3D G3DSA:1.20.1250.20 212 402 1.4E-19 T 31-10-2018 Y89_5830 cdbb248dd3b87abf195d293d614b26eb 406 Gene3D G3DSA:3.40.50.150 49 230 2.3E-5 T 31-10-2018 Y89_5830 cdbb248dd3b87abf195d293d614b26eb 406 Pfam PF13679 Methyltransferase domain 131 236 9.5E-13 T 31-10-2018 IPR025714 Methyltransferase domain Y89_5830 cdbb248dd3b87abf195d293d614b26eb 406 SUPERFAMILY SSF53335 124 191 4.94E-6 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 SUPERFAMILY SSF53056 11 227 9.94E-70 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 103 123 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 SMART SM00947 48 215 1.5E-65 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 Gene3D G3DSA:3.40.1050.10 6 223 2.6E-74 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 Pfam PF00484 Carbonic anhydrase 55 210 1.7E-50 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_0113 aa1a0161debafdf2b6375f3e08bfeba8 242 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 60 67 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Y89_1986 e86c5bc56f19dcf2c3404bafbef01a5b 79 SUPERFAMILY SSF52833 5 78 6.9E-14 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1986 e86c5bc56f19dcf2c3404bafbef01a5b 79 Gene3D G3DSA:3.40.30.10 4 79 9.0E-21 T 31-10-2018 Y89_1986 e86c5bc56f19dcf2c3404bafbef01a5b 79 Pfam PF05768 Glutaredoxin-like domain (DUF836) 5 77 7.5E-17 T 31-10-2018 IPR008554 Glutaredoxin-like Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 SUPERFAMILY SSF56645 6 243 1.24E-78 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:1.10.540.10 5 118 3.1E-30 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 PIRSF PIRSF016578 109 363 3.3E-13 T 31-10-2018 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 PIRSF PIRSF016578 3 83 3.8E-7 T 31-10-2018 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 4.2E-30 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:2.40.110.10 120 236 9.1E-44 T 31-10-2018 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Gene3D G3DSA:1.20.140.10 237 383 1.5E-56 T 31-10-2018 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 SUPERFAMILY SSF47203 229 380 2.9E-56 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 5.2E-30 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_3704 371f5bfd44e644cc549d95a0452f9d0c 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 378 2.0E-49 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_3937 2e8a87d29c469e9cb951919b2b3e318c 397 Gene3D G3DSA:1.20.1250.20 208 386 1.1E-7 T 31-10-2018 Y89_3937 2e8a87d29c469e9cb951919b2b3e318c 397 SUPERFAMILY SSF103473 9 381 4.97E-23 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3937 2e8a87d29c469e9cb951919b2b3e318c 397 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 20 378 1.0E-126 T 31-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB Y89_3937 2e8a87d29c469e9cb951919b2b3e318c 397 Gene3D G3DSA:1.20.1250.20 9 207 8.3E-10 T 31-10-2018 Y89_4367 868e096dabffd6141df2d5ac04b0c1f1 247 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 33 84 2.8E-13 T 31-10-2018 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 SMART SM00850 148 246 8.0E-25 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 SMART SM00448 1 113 6.8E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 Gene3D G3DSA:3.40.50.2300 1 124 9.1E-34 T 31-10-2018 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 Pfam PF00072 Response regulator receiver domain 3 113 4.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 Pfam PF04397 LytTr DNA-binding domain 149 245 3.4E-21 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 Gene3D G3DSA:2.40.50.40 138 206 2.4E-7 T 31-10-2018 Y89_5950 74b6847b6ad76a43e62e20cf63810008 248 SUPERFAMILY SSF52172 1 122 9.11E-34 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1517 637ac4a0dfef8fd23939b3c24d5b4992 344 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 3 334 26.177 T 31-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Y89_1517 637ac4a0dfef8fd23939b3c24d5b4992 344 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 333 2.6E-139 T 31-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Y89_1517 637ac4a0dfef8fd23939b3c24d5b4992 344 Pfam PF03116 NQR2, RnfD, RnfE family 7 332 2.8E-102 T 31-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Y89_0211 c0e361636bba751e46ca79bb2088e2a7 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 72 199 1.7E-37 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 SUPERFAMILY SSF52540 277 513 6.58E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 SMART SM00490 632 712 2.3E-21 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 SMART SM00487 298 482 7.6E-33 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 Gene3D G3DSA:1.20.120.850 535 760 9.4E-81 T 31-10-2018 Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 Gene3D G3DSA:3.40.50.300 520 726 9.4E-81 T 31-10-2018 Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 SUPERFAMILY SSF52540 514 766 2.72E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 Gene3D G3DSA:3.40.50.10810 303 514 1.7E-67 T 31-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 Pfam PF00176 SNF2 family N-terminal domain 320 585 9.9E-64 T 31-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Y89_4558 b510ef85c6fd8fc6e70bfa04d756c8fa 773 Pfam PF00271 Helicase conserved C-terminal domain 603 712 5.6E-17 T 31-10-2018 IPR001650 Helicase, C-terminal Y89_3798 9c6b2e1641da86f4a0cc2924647f7448 109 SUPERFAMILY SSF103481 12 108 4.84E-17 T 31-10-2018 Y89_3798 9c6b2e1641da86f4a0cc2924647f7448 109 Gene3D G3DSA:1.10.3730.20 7 109 1.2E-26 T 31-10-2018 Y89_3798 9c6b2e1641da86f4a0cc2924647f7448 109 Pfam PF00893 Small Multidrug Resistance protein 5 99 3.5E-26 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Y89_5533 dee5222d15247c227daf64ad2423c04c 280 Hamap MF_01384 Urease accessory protein UreD [ureD]. 14 264 28.274 T 31-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 Y89_5533 dee5222d15247c227daf64ad2423c04c 280 Pfam PF01774 UreD urease accessory protein 57 253 6.9E-49 T 31-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 Y89_4698 0f2c9bfcd5aff4409d2b3348d7577646 259 Pfam PF01636 Phosphotransferase enzyme family 27 242 1.1E-14 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase Y89_4698 0f2c9bfcd5aff4409d2b3348d7577646 259 Gene3D G3DSA:3.30.200.20 1 88 2.1E-24 T 31-10-2018 Y89_4698 0f2c9bfcd5aff4409d2b3348d7577646 259 Gene3D G3DSA:3.90.1200.10 95 259 6.1E-32 T 31-10-2018 Y89_4698 0f2c9bfcd5aff4409d2b3348d7577646 259 PIRSF PIRSF000706 1 259 1.7E-76 T 31-10-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 Y89_4698 0f2c9bfcd5aff4409d2b3348d7577646 259 SUPERFAMILY SSF56112 2 248 1.32E-35 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_2947 c027b42d00783cd357e4e58c4f2f9d22 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 283 1.2E-11 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_2947 c027b42d00783cd357e4e58c4f2f9d22 288 Gene3D G3DSA:1.10.3720.10 83 280 2.4E-20 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2947 c027b42d00783cd357e4e58c4f2f9d22 288 SUPERFAMILY SSF161098 86 269 1.31E-23 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1310 f54e57caa05a6f8723886ca6b84dea00 568 Pfam PF14903 WG containing repeat 130 164 4.7E-4 T 31-10-2018 IPR032774 WG containing repeat Y89_1310 f54e57caa05a6f8723886ca6b84dea00 568 Pfam PF14903 WG containing repeat 316 336 0.0085 T 31-10-2018 IPR032774 WG containing repeat Y89_0698 bd32a9a3ddcff544ff20c9121a7bc899 114 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 20 94 3.2E-18 T 31-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 Gene3D G3DSA:3.40.50.620 1 131 9.9E-20 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 SUPERFAMILY SSF52402 1 124 1.09E-22 T 31-10-2018 Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 Pfam PF00582 Universal stress protein family 133 270 1.5E-15 T 31-10-2018 IPR006016 UspA Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 Pfam PF00582 Universal stress protein family 1 124 5.4E-21 T 31-10-2018 IPR006016 UspA Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 PRINTS PR01438 Universal stress protein signature 231 243 1.2E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 PRINTS PR01438 Universal stress protein signature 133 151 1.2E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 PRINTS PR01438 Universal stress protein signature 249 271 1.2E-5 T 31-10-2018 IPR006015 Universal stress protein A Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 Gene3D G3DSA:3.40.50.620 132 270 2.4E-14 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_5699 8516ecd65550a996da589a077bf7e7f9 271 SUPERFAMILY SSF52402 133 269 5.94E-16 T 31-10-2018 Y89_5581 11611269a66d2ea2454cdcafcd7dd9ee 425 Pfam PF02653 Branched-chain amino acid transport system / permease component 117 402 1.6E-46 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_5581 11611269a66d2ea2454cdcafcd7dd9ee 425 Pfam PF11862 Domain of unknown function (DUF3382) 13 109 5.4E-20 T 31-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Y89_6256 24c607eb79903112319c65b6ef70101d 288 SUPERFAMILY SSF53613 4 281 9.82E-71 T 31-10-2018 IPR029056 Ribokinase-like Y89_6256 24c607eb79903112319c65b6ef70101d 288 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 6 287 1.2E-111 T 31-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Y89_6256 24c607eb79903112319c65b6ef70101d 288 Gene3D G3DSA:3.40.1190.20 1 288 5.3E-89 T 31-10-2018 IPR029056 Ribokinase-like Y89_6256 24c607eb79903112319c65b6ef70101d 288 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 4 288 54.054 T 31-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 Y89_6256 24c607eb79903112319c65b6ef70101d 288 Pfam PF08543 Phosphomethylpyrimidine kinase 77 262 1.8E-12 T 31-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Y89_1922 d96623e0b8ad966332bd57d549472f62 333 PIRSF PIRSF002786 1 316 2.8E-76 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y89_1922 d96623e0b8ad966332bd57d549472f62 333 Pfam PF03934 Type II secretion system (T2SS), protein K 30 307 3.0E-87 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y89_1922 d96623e0b8ad966332bd57d549472f62 333 SUPERFAMILY SSF158544 108 214 1.7E-25 T 31-10-2018 IPR038072 GspK, central domain superfamily Y89_1922 d96623e0b8ad966332bd57d549472f62 333 Gene3D G3DSA:1.10.40.60 106 215 2.1E-65 T 31-10-2018 IPR038072 GspK, central domain superfamily Y89_1922 d96623e0b8ad966332bd57d549472f62 333 Gene3D G3DSA:3.30.1300.30 42 300 2.1E-65 T 31-10-2018 Y89_1922 d96623e0b8ad966332bd57d549472f62 333 SUPERFAMILY SSF158544 216 272 2.59E-8 T 31-10-2018 IPR038072 GspK, central domain superfamily Y89_1922 d96623e0b8ad966332bd57d549472f62 333 Gene3D G3DSA:1.10.40.60 216 275 2.1E-65 T 31-10-2018 IPR038072 GspK, central domain superfamily Y89_1922 d96623e0b8ad966332bd57d549472f62 333 SUPERFAMILY SSF54523 38 314 2.04E-17 T 31-10-2018 Y89_4473 3654e84db9895a91c4471f1de5ba2b7e 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 4.0E-124 T 31-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y89_4473 3654e84db9895a91c4471f1de5ba2b7e 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 1.0E-148 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_4473 3654e84db9895a91c4471f1de5ba2b7e 427 PIRSF PIRSF006066 1 427 5.1E-156 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_0321 6b6dd5587c9b1db5a1b9025358cb30fa 303 SUPERFAMILY SSF161098 15 293 6.41E-56 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0321 6b6dd5587c9b1db5a1b9025358cb30fa 303 Gene3D G3DSA:1.10.3720.10 15 298 1.1E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0321 6b6dd5587c9b1db5a1b9025358cb30fa 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 289 6.0E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0559 998679d9cf9b71f06feddcb534caeb48 202 SUPERFAMILY SSF140478 26 182 8.76E-54 T 31-10-2018 IPR023353 LemA-like domain superfamily Y89_0559 998679d9cf9b71f06feddcb534caeb48 202 Gene3D G3DSA:1.20.1440.20 18 195 4.1E-62 T 31-10-2018 IPR023353 LemA-like domain superfamily Y89_0559 998679d9cf9b71f06feddcb534caeb48 202 Pfam PF04011 LemA family 12 195 2.9E-64 T 31-10-2018 IPR007156 LemA Y89_5219 7ad5ab9f788eb6463d028f0f4079aa56 84 Pfam PF04325 Protein of unknown function (DUF465) 29 75 1.3E-12 T 31-10-2018 IPR007420 Protein of unknown function DUF465 Y89_5219 7ad5ab9f788eb6463d028f0f4079aa56 84 Gene3D G3DSA:1.20.58.660 11 84 7.7E-17 T 31-10-2018 Y89_0700 357ed90287fe3706efe53e2befab95aa 290 Pfam PF06995 Phage P2 GpU 158 285 8.5E-40 T 31-10-2018 IPR009734 Myoviridae, GpU Y89_0700 357ed90287fe3706efe53e2befab95aa 290 PIRSF PIRSF011237 1 290 1.1E-159 T 31-10-2018 IPR014458 Uncharacterised protein family, phage P2-GpU-fusion Y89_3427 ebf1c9c34b3d78bdefec20a9a6fbd76a 255 Pfam PF04116 Fatty acid hydroxylase superfamily 76 206 1.2E-28 T 31-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 11 164 2.6E-65 T 31-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 SUPERFAMILY SSF54211 81 160 7.33E-26 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Y89_0776 fc08e04c3799517c32a377844260ffc9 166 SUPERFAMILY SSF54768 10 77 1.05E-22 T 31-10-2018 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 33.768 T 31-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 29 61 - T 31-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site Y89_0776 fc08e04c3799517c32a377844260ffc9 166 Gene3D G3DSA:3.30.160.20 1 74 2.9E-29 T 31-10-2018 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 14 75 7.0E-27 T 31-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Y89_0776 fc08e04c3799517c32a377844260ffc9 166 Gene3D G3DSA:3.30.230.10 75 166 1.8E-36 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Y89_0776 fc08e04c3799517c32a377844260ffc9 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 158 8.7E-31 T 31-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Y89_5187 c8764e97f35e0a6f9d14b0b447da8629 184 Pfam PF08719 Domain of unknown function (DUF1768) 25 182 1.3E-52 T 31-10-2018 IPR012816 NADAR Y89_5187 c8764e97f35e0a6f9d14b0b447da8629 184 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 23 182 2.5E-49 T 31-10-2018 IPR012816 NADAR Y89_5187 c8764e97f35e0a6f9d14b0b447da8629 184 Gene3D G3DSA:1.10.357.40 24 184 2.3E-43 T 31-10-2018 IPR037238 YbiA-like superfamily Y89_5187 c8764e97f35e0a6f9d14b0b447da8629 184 SUPERFAMILY SSF143990 19 183 1.44E-51 T 31-10-2018 IPR037238 YbiA-like superfamily Y89_3288 954356aef494e6e05be8ea071fec3b86 224 Pfam PF13649 Methyltransferase domain 45 140 6.4E-13 T 31-10-2018 Y89_3288 954356aef494e6e05be8ea071fec3b86 224 SUPERFAMILY SSF53335 7 221 1.66E-30 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3288 954356aef494e6e05be8ea071fec3b86 224 Gene3D G3DSA:3.40.50.150 3 223 4.4E-34 T 31-10-2018 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 SUPERFAMILY SSF46785 12 89 5.66E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 SMART SM00866 98 235 3.8E-27 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 Gene3D G3DSA:3.40.1410.10 86 239 9.3E-36 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 SMART SM00345 20 77 5.1E-16 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 Gene3D G3DSA:1.10.10.10 9 82 2.8E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 Pfam PF07702 UTRA domain 98 235 2.0E-31 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 SUPERFAMILY SSF64288 65 238 2.83E-39 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.7E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.7E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 16 238 1.3E-50 T 31-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF Y89_1628 af4cced49937f82f6aa836e7b4f0b3fb 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 2.7E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_3353 881604a873e0d15e7d297c48dbb1fffc 437 Pfam PF05525 Branched-chain amino acid transport protein 7 427 6.6E-157 T 31-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y89_3353 881604a873e0d15e7d297c48dbb1fffc 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 4.0E-164 T 31-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 Y89_5889 fecfd159afe09260cc85e26e548bc568 129 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 126 4.1E-23 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_5889 fecfd159afe09260cc85e26e548bc568 129 SUPERFAMILY SSF54637 10 128 1.39E-35 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5889 fecfd159afe09260cc85e26e548bc568 129 Pfam PF03061 Thioesterase superfamily 44 119 2.6E-21 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_5889 fecfd159afe09260cc85e26e548bc568 129 Gene3D G3DSA:3.10.129.10 1 129 4.3E-54 T 31-10-2018 Y89_3996 fd330fc23689aa249103a2bc6bbdb695 137 SUPERFAMILY SSF54593 1 134 2.6E-38 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3996 fd330fc23689aa249103a2bc6bbdb695 137 Gene3D G3DSA:3.10.180.10 7 137 1.0E-58 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_3996 fd330fc23689aa249103a2bc6bbdb695 137 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 131 1.7E-10 T 31-10-2018 IPR028973 PhnB-like Y89_0682 4262003207c05657e661709ae6c2a4d8 272 SUPERFAMILY SSF56784 13 226 1.05E-59 T 31-10-2018 IPR036412 HAD-like superfamily Y89_0682 4262003207c05657e661709ae6c2a4d8 272 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 16 227 4.1E-68 T 31-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 13 230 37.663 T 31-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 113 126 6.0E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 13 24 6.0E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 6.0E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 162 182 6.0E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 197 2.2E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 199 6.8E-36 T 31-10-2018 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 Gene3D G3DSA:1.10.150.240 28 99 5.2E-64 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 194 7.4E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0682 4262003207c05657e661709ae6c2a4d8 272 Gene3D G3DSA:3.40.50.1000 16 221 5.2E-64 T 31-10-2018 IPR023214 HAD superfamily Y89_2788 34c910016801ae359358637fc4f4c359 72 SUPERFAMILY SSF160582 1 69 2.48E-30 T 31-10-2018 IPR038020 MbtH-like domain superfamily Y89_2788 34c910016801ae359358637fc4f4c359 72 SMART SM00923 3 53 6.0E-27 T 31-10-2018 IPR005153 MbtH-like domain Y89_2788 34c910016801ae359358637fc4f4c359 72 Pfam PF03621 MbtH-like protein 1 53 6.9E-25 T 31-10-2018 IPR005153 MbtH-like domain Y89_2788 34c910016801ae359358637fc4f4c359 72 Gene3D G3DSA:3.90.820.10 1 72 8.4E-37 T 31-10-2018 Y89_4697 5669f396457ea9d1c1094b8f09b80ee4 179 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 10 60 1.1E-12 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_4697 5669f396457ea9d1c1094b8f09b80ee4 179 Gene3D G3DSA:1.10.560.10 63 154 9.6E-30 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4697 5669f396457ea9d1c1094b8f09b80ee4 179 Pfam PF00118 TCP-1/cpn60 chaperonin family 65 156 1.2E-18 T 31-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Y89_4697 5669f396457ea9d1c1094b8f09b80ee4 179 SUPERFAMILY SSF48592 62 158 2.35E-22 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4697 5669f396457ea9d1c1094b8f09b80ee4 179 Gene3D G3DSA:1.10.150.130 7 59 2.1E-15 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 Pfam PF00107 Zinc-binding dehydrogenase 194 296 5.9E-27 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 Gene3D G3DSA:3.90.180.10 24 351 2.3E-101 T 31-10-2018 Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 147 4.1E-20 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 SUPERFAMILY SSF51735 157 329 5.52E-41 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 Gene3D G3DSA:3.40.50.720 179 307 2.3E-101 T 31-10-2018 Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 SUPERFAMILY SSF50129 2 199 3.96E-39 T 31-10-2018 IPR011032 GroES-like superfamily Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Y89_3161 95619aca5cb29e0053bec8c5c85961c9 366 SMART SM00829 14 359 5.7E-6 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_5158 2611ef496c8eb338e670b7f7d020e702 185 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 34 3.2E-6 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5158 2611ef496c8eb338e670b7f7d020e702 185 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 12 158 5.0E-47 T 31-10-2018 IPR013362 Pilus modification type IV, PilV Y89_5158 2611ef496c8eb338e670b7f7d020e702 185 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 1.0E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2439 b180eee267a422bd6af96f5ecc0a8a76 486 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 8 473 1.5E-128 T 31-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Y89_2439 b180eee267a422bd6af96f5ecc0a8a76 486 Pfam PF00361 Proton-conducting membrane transporter 122 419 1.7E-80 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_2439 b180eee267a422bd6af96f5ecc0a8a76 486 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 474 17.864 T 31-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 Gene3D G3DSA:2.60.40.10 151 243 2.2E-13 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 Gene3D G3DSA:2.60.40.10 29 147 3.8E-35 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 SUPERFAMILY SSF49584 140 235 1.2E-10 T 31-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 235 5.1E-9 T 31-10-2018 IPR016148 Pili assembly chaperone, C-terminal Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 SUPERFAMILY SSF49354 23 146 1.2E-34 T 31-10-2018 IPR008962 PapD-like superfamily Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 146 1.5E-34 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 PRINTS PR00969 Pili chaperone signature 128 143 4.8E-20 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 PRINTS PR00969 Pili chaperone signature 104 121 4.8E-20 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 PRINTS PR00969 Pili chaperone signature 27 36 4.8E-20 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_0941 85038fb3e510017e0744709b0c0cb36e 246 PRINTS PR00969 Pili chaperone signature 76 97 4.8E-20 T 31-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 Y89_5464 82a2cedc5a059a8190266dd5aef17bc5 209 Gene3D G3DSA:1.10.530.10 20 192 1.0E-32 T 31-10-2018 Y89_5464 82a2cedc5a059a8190266dd5aef17bc5 209 SUPERFAMILY SSF53955 36 202 2.25E-34 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5464 82a2cedc5a059a8190266dd5aef17bc5 209 Pfam PF01464 Transglycosylase SLT domain 50 154 1.8E-13 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 77 1.6E-12 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 Gene3D G3DSA:3.40.30.110 206 311 3.9E-28 T 31-10-2018 Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 SUPERFAMILY SSF52833 4 91 1.51E-15 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 Gene3D G3DSA:3.40.30.110 1 122 1.4E-37 T 31-10-2018 Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 SUPERFAMILY SSF47616 139 217 1.08E-13 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_1172 6657ee5dc9e59d4525d1490d9cbb12ef 311 Pfam PF13410 Glutathione S-transferase, C-terminal domain 150 214 3.9E-8 T 31-10-2018 Y89_0410 70a1fa28caa41e0d91b420cf8c26e550 139 Gene3D G3DSA:2.60.40.3340 14 139 6.8E-42 T 31-10-2018 Y89_0410 70a1fa28caa41e0d91b420cf8c26e550 139 Pfam PF14467 Domain of unknown function (DUF4426) 23 138 1.5E-40 T 31-10-2018 IPR025218 Domain of unknown function DUF4426 Y89_1558 de1f56f739251e5baee89837cd537c6f 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 259 3.2E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1558 de1f56f739251e5baee89837cd537c6f 272 Gene3D G3DSA:1.10.3720.10 66 258 4.7E-23 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1558 de1f56f739251e5baee89837cd537c6f 272 SUPERFAMILY SSF161098 66 247 3.53E-30 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2588 913de441f95b042f5f74fb17330dc2b7 284 Pfam PF10370 Domain of unknown function (DUF2437) 1 65 1.6E-5 T 31-10-2018 IPR018833 Domain of unknown function DUF2437 Y89_2588 913de441f95b042f5f74fb17330dc2b7 284 SUPERFAMILY SSF56529 59 278 1.18E-63 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_2588 913de441f95b042f5f74fb17330dc2b7 284 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 278 1.1E-53 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_2588 913de441f95b042f5f74fb17330dc2b7 284 Gene3D G3DSA:3.90.850.10 66 284 2.2E-66 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 Pfam PF01979 Amidohydrolase family 50 436 1.8E-28 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 SUPERFAMILY SSF51338 1 455 7.04E-34 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 Gene3D G3DSA:2.30.40.10 3 463 1.1E-190 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 Gene3D G3DSA:3.20.20.140 54 424 1.1E-190 T 31-10-2018 Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 SUPERFAMILY SSF51556 54 383 8.85E-109 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_0464 ce3809b255b18d2a6b5ca72bafe7bfdc 479 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 3 455 4.7E-176 T 31-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 Y89_0202 7b0a65b362adae85e4cbbb69f8e57684 241 SMART SM00014 110 215 0.0052 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_0202 7b0a65b362adae85e4cbbb69f8e57684 241 Pfam PF01569 PAP2 superfamily 120 212 2.3E-12 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Y89_0202 7b0a65b362adae85e4cbbb69f8e57684 241 SUPERFAMILY SSF48317 3 232 3.01E-34 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Y89_0202 7b0a65b362adae85e4cbbb69f8e57684 241 PIRSF PIRSF000897 1 241 5.4E-69 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 Y89_0202 7b0a65b362adae85e4cbbb69f8e57684 241 Gene3D G3DSA:1.20.144.10 32 239 8.1E-54 T 31-10-2018 Y89_2520 5b582e4cba6f8cffdee05107e296e2d4 266 Gene3D G3DSA:3.90.226.10 3 204 6.2E-57 T 31-10-2018 Y89_2520 5b582e4cba6f8cffdee05107e296e2d4 266 SUPERFAMILY SSF52096 2 263 2.56E-69 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2520 5b582e4cba6f8cffdee05107e296e2d4 266 Gene3D G3DSA:1.10.12.10 206 266 4.7E-24 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_2520 5b582e4cba6f8cffdee05107e296e2d4 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 263 1.4E-44 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 209 235 - T 31-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Pfam PF12799 Leucine Rich repeats (2 copies) 37 75 1.6E-6 T 31-10-2018 IPR025875 Leucine rich repeat 4 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Gene3D G3DSA:3.80.10.10 103 190 3.0E-14 T 31-10-2018 IPR032675 Leucine-rich repeat domain superfamily Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Gene3D G3DSA:3.80.10.10 4 102 2.7E-16 T 31-10-2018 IPR032675 Leucine-rich repeat domain superfamily Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Gene3D G3DSA:3.30.200.20 193 276 6.3E-6 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00369 104 126 16.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00369 128 148 70.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00369 37 58 4.7 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00364 128 144 290.0 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00364 35 54 55.0 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00364 103 122 6.9 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00364 148 167 360.0 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SMART SM00364 171 190 120.0 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SUPERFAMILY SSF52058 12 185 1.63E-30 T 31-10-2018 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Pfam PF07714 Protein tyrosine kinase 205 365 9.1E-11 T 31-10-2018 IPR001245 Serine-threonine/tyrosine-protein kinase, catalytic domain GO:0004672|GO:0006468 Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 SUPERFAMILY SSF56112 199 433 2.97E-22 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_2690 a8ff1d92b0d64a91571bb3a07e48ea29 446 Gene3D G3DSA:1.10.510.10 308 442 9.6E-12 T 31-10-2018 Y89_1567 451706c194a580dc049d7c1b2a7d66e3 103 Gene3D G3DSA:1.10.3340.10 2 103 2.6E-48 T 31-10-2018 IPR036810 SMc04008-like superfamily Y89_1567 451706c194a580dc049d7c1b2a7d66e3 103 SUPERFAMILY SSF158757 5 82 4.05E-38 T 31-10-2018 IPR036810 SMc04008-like superfamily Y89_1567 451706c194a580dc049d7c1b2a7d66e3 103 Pfam PF06844 Protein of unknown function (DUF1244) 32 97 2.7E-38 T 31-10-2018 IPR023163 SMc04008-like domain Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 6 191 6.4E-73 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 Gene3D G3DSA:3.30.300.30 92 199 5.9E-39 T 31-10-2018 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 Gene3D G3DSA:3.30.70.1530 19 90 1.0E-28 T 31-10-2018 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 Pfam PF01514 Secretory protein of YscJ/FliF family 8 186 1.8E-26 T 31-10-2018 IPR006182 Secretory protein YscJ/FliF Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 165 177 6.4E-30 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 96 111 6.4E-30 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 24 34 6.4E-30 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 116 129 6.4E-30 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_3610 f2d62ca486b1b97e132eb595a55eaf24 244 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 76 89 6.4E-30 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 Y89_2848 b4e8d0343bbb779157e1a9249808e8d0 375 SUPERFAMILY SSF51695 41 357 2.33E-59 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_2848 b4e8d0343bbb779157e1a9249808e8d0 375 Gene3D G3DSA:3.20.20.190 37 358 8.1E-75 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_2848 b4e8d0343bbb779157e1a9249808e8d0 375 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 48 351 6.3E-35 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y89_2817 84f0f56ace30f1fdbf42f3870b9eed71 383 PIRSF PIRSF000138 1 380 1.8E-128 T 31-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Y89_2817 84f0f56ace30f1fdbf42f3870b9eed71 383 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 31-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Y89_2817 84f0f56ace30f1fdbf42f3870b9eed71 383 Pfam PF01070 FMN-dependent dehydrogenase 14 376 3.7E-136 T 31-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Y89_2817 84f0f56ace30f1fdbf42f3870b9eed71 383 Gene3D G3DSA:3.20.20.70 3 379 7.6E-135 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2817 84f0f56ace30f1fdbf42f3870b9eed71 383 SUPERFAMILY SSF51395 4 376 7.94E-105 T 31-10-2018 Y89_5527 f88010045a436394359bfa868acd0c6f 421 Pfam PF13433 Periplasmic binding protein domain 31 407 1.1E-174 T 31-10-2018 Y89_5527 f88010045a436394359bfa868acd0c6f 421 Gene3D G3DSA:3.40.50.2300 146 394 5.9E-142 T 31-10-2018 Y89_5527 f88010045a436394359bfa868acd0c6f 421 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 7.8E-180 T 31-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like Y89_5527 f88010045a436394359bfa868acd0c6f 421 Gene3D G3DSA:3.40.50.2300 33 375 5.9E-142 T 31-10-2018 Y89_5527 f88010045a436394359bfa868acd0c6f 421 SUPERFAMILY SSF53822 30 408 6.8E-94 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_5527 f88010045a436394359bfa868acd0c6f 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 5.2E-5 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5527 f88010045a436394359bfa868acd0c6f 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 5.2E-5 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_5527 f88010045a436394359bfa868acd0c6f 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 5.2E-5 T 31-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Y89_1015 86d1d1ca944804b81bb2139f04f5e3a1 285 SUPERFAMILY SSF53335 27 260 6.13E-30 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_1015 86d1d1ca944804b81bb2139f04f5e3a1 285 Gene3D G3DSA:3.40.50.150 25 279 5.2E-26 T 31-10-2018 Y89_1015 86d1d1ca944804b81bb2139f04f5e3a1 285 Pfam PF04072 Leucine carboxyl methyltransferase 60 180 7.7E-16 T 31-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 Y89_6366 c19ec2afa9e523e2ca81d82fb73da5cf 162 Pfam PF12101 Protein of unknown function (DUF3577) 7 136 2.5E-57 T 31-10-2018 IPR021960 Protein of unknown function DUF3577 Y89_1086 e43d02cf56b24d8e166d115e508110d1 263 SUPERFAMILY SSF52540 7 219 6.01E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1086 e43d02cf56b24d8e166d115e508110d1 263 Pfam PF00005 ABC transporter 23 162 7.9E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1086 e43d02cf56b24d8e166d115e508110d1 263 Gene3D G3DSA:3.40.50.300 3 248 4.4E-63 T 31-10-2018 Y89_1086 e43d02cf56b24d8e166d115e508110d1 263 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1086 e43d02cf56b24d8e166d115e508110d1 263 SMART SM00382 32 213 1.8E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 SUPERFAMILY SSF47616 77 200 6.0E-30 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 Gene3D G3DSA:1.20.1050.10 82 197 9.8E-41 T 31-10-2018 Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 75 2.6E-16 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 Gene3D G3DSA:3.40.30.10 1 79 6.4E-28 T 31-10-2018 Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 189 1.6E-11 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_3679 a31ab9f96595388412245f0df50e4ee6 200 SUPERFAMILY SSF52833 1 76 1.25E-23 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0021 204764c1f88a1b05a914626ba72f1aa9 105 Gene3D G3DSA:1.25.40.10 1 105 1.8E-24 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0021 204764c1f88a1b05a914626ba72f1aa9 105 Pfam PF13428 Tetratricopeptide repeat 22 59 9.4E-6 T 31-10-2018 Y89_0021 204764c1f88a1b05a914626ba72f1aa9 105 SMART SM00028 51 84 23.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_0021 204764c1f88a1b05a914626ba72f1aa9 105 SMART SM00028 17 50 0.25 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Y89_0021 204764c1f88a1b05a914626ba72f1aa9 105 SUPERFAMILY SSF48452 5 83 5.06E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2265 5b96928d551788dcff4d1156b3e88358 322 SUPERFAMILY SSF52096 6 295 1.78E-61 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2265 5b96928d551788dcff4d1156b3e88358 322 Gene3D G3DSA:3.90.226.10 3 318 2.9E-69 T 31-10-2018 Y89_2265 5b96928d551788dcff4d1156b3e88358 322 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 137 157 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_2265 5b96928d551788dcff4d1156b3e88358 322 Pfam PF00378 Enoyl-CoA hydratase/isomerase 124 293 2.9E-35 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_2265 5b96928d551788dcff4d1156b3e88358 322 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 74 1.7E-7 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 31-10-2018 IPR033135 ClpP, histidine active site Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 Gene3D G3DSA:3.90.226.10 13 198 1.9E-58 T 31-10-2018 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 Pfam PF00574 Clp protease 19 192 4.8E-64 T 31-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 1 193 32.757 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 SUPERFAMILY SSF52096 16 194 1.67E-54 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 3.0E-27 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 3.0E-27 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 3.0E-27 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_1683 54a0ae541ff817f80c4e3037317c3122 201 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 3.0E-27 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Y89_5443 aeef69318363f429ab77255ba300dd17 1255 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 885 955 9.2E-22 T 31-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y89_5443 aeef69318363f429ab77255ba300dd17 1255 Pfam PF06791 Prophage tail length tape measure protein 313 445 3.1E-40 T 31-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Y89_5443 aeef69318363f429ab77255ba300dd17 1255 Pfam PF06791 Prophage tail length tape measure protein 201 267 1.0E-23 T 31-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Y89_3918 2cca0a4ba6e242c785ea3b9a731d9d03 355 Gene3D G3DSA:3.40.50.1970 1 160 1.0E-46 T 31-10-2018 Y89_3918 2cca0a4ba6e242c785ea3b9a731d9d03 355 Gene3D G3DSA:1.20.1090.10 162 355 6.9E-59 T 31-10-2018 Y89_3918 2cca0a4ba6e242c785ea3b9a731d9d03 355 SUPERFAMILY SSF56796 8 351 4.84E-92 T 31-10-2018 Y89_3918 2cca0a4ba6e242c785ea3b9a731d9d03 355 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 337 2.9E-84 T 31-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y89_4337 7c0be92548564407a7541184de74b89e 451 Gene3D G3DSA:1.20.1250.20 13 218 5.8E-42 T 31-10-2018 Y89_4337 7c0be92548564407a7541184de74b89e 451 SUPERFAMILY SSF103473 11 414 3.4E-77 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4337 7c0be92548564407a7541184de74b89e 451 Pfam PF07690 Major Facilitator Superfamily 27 380 6.7E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4337 7c0be92548564407a7541184de74b89e 451 Gene3D G3DSA:1.20.1250.20 236 417 2.0E-25 T 31-10-2018 Y89_4337 7c0be92548564407a7541184de74b89e 451 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 311 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 Gene3D G3DSA:1.10.1660.10 1 121 1.9E-25 T 31-10-2018 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 SMART SM00422 4 72 5.1E-12 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 6.1E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 6.1E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 6.1E-7 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 Pfam PF13411 MerR HTH family regulatory protein 6 67 3.2E-13 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5787 844399290c4e638a226b8588e7e0aa3e 141 SUPERFAMILY SSF46955 5 123 9.89E-25 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5698 5e55a99b91e49f90864fa090b336f7e4 150 SUPERFAMILY SSF54637 11 145 6.66E-27 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5698 5e55a99b91e49f90864fa090b336f7e4 150 Gene3D G3DSA:3.10.129.10 1 150 8.6E-47 T 31-10-2018 Y89_5698 5e55a99b91e49f90864fa090b336f7e4 150 Pfam PF14539 Domain of unknown function (DUF4442) 13 138 1.2E-19 T 31-10-2018 IPR027961 Protein of unknown function DUF4442 Y89_1794 498c79299b83eb950bca2f1daccd3c61 111 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 110 9.5E-50 T 31-10-2018 IPR008231 Probable chaperone CsaA Y89_1794 498c79299b83eb950bca2f1daccd3c61 111 SUPERFAMILY SSF50249 4 110 2.69E-32 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_1794 498c79299b83eb950bca2f1daccd3c61 111 Gene3D G3DSA:2.40.50.140 1 111 2.6E-32 T 31-10-2018 Y89_1794 498c79299b83eb950bca2f1daccd3c61 111 Pfam PF01588 Putative tRNA binding domain 14 108 7.7E-17 T 31-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Y89_1081 293bdae383efa8c5c0aef6ab6611e4cc 289 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 1.9E-91 T 31-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 Y89_1081 293bdae383efa8c5c0aef6ab6611e4cc 289 SUPERFAMILY SSF54637 5 114 7.46E-41 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1081 293bdae383efa8c5c0aef6ab6611e4cc 289 SUPERFAMILY SSF54637 117 285 1.45E-60 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_1081 293bdae383efa8c5c0aef6ab6611e4cc 289 Gene3D G3DSA:3.10.129.90 2 286 1.4E-109 T 31-10-2018 Y89_1081 293bdae383efa8c5c0aef6ab6611e4cc 289 Pfam PF13622 Thioesterase-like superfamily 33 282 2.4E-62 T 31-10-2018 Y89_5304 1c03ec2e79cab58464936f174c57f234 337 SUPERFAMILY SSF56524 82 333 6.41E-92 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_5304 1c03ec2e79cab58464936f174c57f234 337 Pfam PF00174 Oxidoreductase molybdopterin binding domain 114 271 7.9E-31 T 31-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Y89_5304 1c03ec2e79cab58464936f174c57f234 337 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 3 337 55.357 T 31-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 Y89_5304 1c03ec2e79cab58464936f174c57f234 337 Gene3D G3DSA:3.90.420.10 69 337 3.0E-107 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 3 17 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 165 178 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 51 60 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 123 135 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 78 89 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00097 Anthranilate synthase component II signature 103 111 2.4E-32 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 SUPERFAMILY SSF52317 1 189 9.48E-47 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 186 1.1E-47 T 31-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 Gene3D G3DSA:3.40.50.880 1 190 1.4E-54 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 Pfam PF00117 Glutamine amidotransferase class-I 5 186 1.8E-44 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 78 89 2.4E-14 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 2.4E-14 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00096 Glutamine amidotransferase superfamily signature 51 60 2.4E-14 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 78 94 6.2E-8 T 31-10-2018 Y89_4355 523c3790f6645ae8e3216d5173eb4778 200 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 48 62 6.2E-8 T 31-10-2018 Y89_5405 3fa9aaffc13c673be039cf9379a938b0 311 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 36 151 1.9E-16 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y89_5405 3fa9aaffc13c673be039cf9379a938b0 311 Gene3D G3DSA:3.20.20.190 26 304 4.1E-35 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_5405 3fa9aaffc13c673be039cf9379a938b0 311 SUPERFAMILY SSF51695 29 297 1.02E-44 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_0090 c5e5a2236f9cbe58ee2e8537e4c45264 154 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 11 143 6.8E-44 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y89_0090 c5e5a2236f9cbe58ee2e8537e4c45264 154 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 3 146 5.0E-50 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN Y89_0090 c5e5a2236f9cbe58ee2e8537e4c45264 154 Gene3D G3DSA:2.60.40.4150 24 154 5.2E-49 T 31-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily Y89_1948 6d79e086ec471816786f8d52afdd0511 312 Pfam PF01882 Protein of unknown function DUF58 49 133 2.0E-20 T 31-10-2018 IPR002881 Domain of unknown function DUF58 Y89_0928 442ab86229d293fb22640dbee92181e4 419 SUPERFAMILY SSF103473 9 400 9.94E-74 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_0928 442ab86229d293fb22640dbee92181e4 419 Pfam PF07690 Major Facilitator Superfamily 18 362 4.9E-47 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_0928 442ab86229d293fb22640dbee92181e4 419 Gene3D G3DSA:1.20.1250.20 213 399 2.3E-26 T 31-10-2018 Y89_0928 442ab86229d293fb22640dbee92181e4 419 Gene3D G3DSA:1.20.1250.20 4 202 1.3E-37 T 31-10-2018 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 SUPERFAMILY SSF51905 2 315 5.83E-34 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.2E-8 T 31-10-2018 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.2E-8 T 31-10-2018 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 1.2E-8 T 31-10-2018 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 Gene3D G3DSA:3.50.50.60 125 249 4.9E-40 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 206 222 1.1E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.1E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.1E-10 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_3850 f023365a654c8927949814d16fcb5ca3 412 Gene3D G3DSA:3.50.50.60 8 304 4.9E-40 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3850 f023365a654c8927949814d16fcb5ca3 412 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 294 2.5E-18 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Y89_4037 f264e5b138c6b6d8c73f4433dac15f92 452 Gene3D G3DSA:1.20.1720.10 7 220 1.3E-37 T 31-10-2018 Y89_4037 f264e5b138c6b6d8c73f4433dac15f92 452 Gene3D G3DSA:1.20.1250.20 257 442 8.4E-13 T 31-10-2018 Y89_4037 f264e5b138c6b6d8c73f4433dac15f92 452 Pfam PF07690 Major Facilitator Superfamily 12 401 2.2E-37 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4037 f264e5b138c6b6d8c73f4433dac15f92 452 SUPERFAMILY SSF103473 6 441 7.06E-49 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 31 214 2.6E-36 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Gene3D G3DSA:1.10.10.60 237 345 3.3E-24 T 31-10-2018 Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 SUPERFAMILY SSF46689 292 341 6.27E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 291 335 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 Pfam PF12833 Helix-turn-helix domain 264 340 3.9E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_6062 ae0b4f1c4ffddac2a8f565d36f9474d2 356 SMART SM00342 257 339 5.5E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2689 d1dd0bad7640bae4176c19df34fbdf1a 417 Gene3D G3DSA:1.25.40.20 227 392 2.0E-5 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_2689 d1dd0bad7640bae4176c19df34fbdf1a 417 SUPERFAMILY SSF140860 248 313 6.8E-8 T 31-10-2018 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 SUPERFAMILY SSF56601 27 469 9.4E-92 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 62 454 1.5E-65 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 Gene3D G3DSA:3.50.80.20 92 162 3.6E-22 T 31-10-2018 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 355 369 2.2E-22 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 68 87 2.2E-22 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 370 384 2.2E-22 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 432 445 2.2E-22 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 295 317 2.2E-22 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 30 454 1.4E-86 T 31-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Y89_1972 c76c8c7bcd4fb2fee7af7f610b92ea47 476 Gene3D G3DSA:3.40.710.10 280 469 2.3E-56 T 31-10-2018 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 Pfam PF03466 LysR substrate binding domain 89 277 2.4E-15 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 Gene3D G3DSA:3.40.190.290 90 292 1.3E-65 T 31-10-2018 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 SUPERFAMILY SSF46785 2 110 4.99E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 Gene3D G3DSA:1.10.10.10 1 81 1.8E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 295 55.892 T 31-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 SUPERFAMILY SSF53850 84 289 2.71E-22 T 31-10-2018 Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 290 3.9E-113 T 31-10-2018 IPR017685 HTH-type transcriptional regulator ArgP Y89_4849 4c2f3f53a49297ae480cc76157db92d8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.9E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_0563 c0047c0cea17c48d9458016f4fc2ff0b 152 Gene3D G3DSA:1.20.120.10 22 151 3.1E-29 T 31-10-2018 Y89_0563 c0047c0cea17c48d9458016f4fc2ff0b 152 PIRSF PIRSF000027 7 152 6.8E-47 T 31-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 Y89_0563 c0047c0cea17c48d9458016f4fc2ff0b 152 Pfam PF01322 Cytochrome C' 30 150 1.0E-31 T 31-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 Y89_0563 c0047c0cea17c48d9458016f4fc2ff0b 152 SUPERFAMILY SSF47175 23 150 5.89E-33 T 31-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 Y89_1428 ef7599314c074e7cd695dcd1eda38f94 271 SUPERFAMILY SSF56317 1 251 5.62E-70 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1428 ef7599314c074e7cd695dcd1eda38f94 271 Gene3D G3DSA:3.60.110.10 1 258 3.1E-73 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1428 ef7599314c074e7cd695dcd1eda38f94 271 Pfam PF00795 Carbon-nitrogen hydrolase 5 242 4.7E-49 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 SUPERFAMILY SSF69765 1 155 5.63E-67 T 31-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.806 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 Pfam PF02542 YgbB family 1 154 8.6E-68 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 155 4.2E-73 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 Gene3D G3DSA:3.30.1330.50 1 157 7.6E-72 T 31-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_1399 82ad9b3cab8e9740db15894802fe13ea 157 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 31-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Y89_5643 695620f4c29ec77e265bb0f09f278c26 627 Gene3D G3DSA:3.20.20.540 209 523 2.0E-153 T 31-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y89_5643 695620f4c29ec77e265bb0f09f278c26 627 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 591 3.2E-219 T 31-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y89_5643 695620f4c29ec77e265bb0f09f278c26 627 Pfam PF13667 ThiC-associated domain 22 99 6.9E-34 T 31-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y89_5643 695620f4c29ec77e265bb0f09f278c26 627 Pfam PF01964 Radical SAM ThiC family 140 588 3.0E-200 T 31-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y89_5643 695620f4c29ec77e265bb0f09f278c26 627 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 592 100.0 T 31-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Y89_5499 fafcea5b0ede6e4c75e0a669afd611f2 179 SUPERFAMILY SSF54637 8 173 8.68E-37 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5499 fafcea5b0ede6e4c75e0a669afd611f2 179 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 78 173 1.4E-23 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_5499 fafcea5b0ede6e4c75e0a669afd611f2 179 Gene3D G3DSA:3.10.129.10 53 178 3.0E-38 T 31-10-2018 Y89_5499 fafcea5b0ede6e4c75e0a669afd611f2 179 Pfam PF03061 Thioesterase superfamily 88 165 1.1E-16 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_2106 7396aea5c4d9111bbb8299c3e38b853c 197 Pfam PF01810 LysE type translocator 13 191 8.5E-19 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_1100 973766db0196cd7742e214155540aac6 641 Pfam PF06980 Protein of unknown function (DUF1302) 31 641 5.4E-231 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_3347 52758d8a638eb6967fcd42c2747031be 287 Pfam PF00892 EamA-like transporter family 7 135 8.7E-10 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3347 52758d8a638eb6967fcd42c2747031be 287 Pfam PF00892 EamA-like transporter family 146 275 5.2E-14 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3347 52758d8a638eb6967fcd42c2747031be 287 SUPERFAMILY SSF103481 42 139 2.62E-8 T 31-10-2018 Y89_3347 52758d8a638eb6967fcd42c2747031be 287 SUPERFAMILY SSF103481 182 278 8.37E-9 T 31-10-2018 Y89_4977 70baf84a3116e77348781c9cd7775a9d 277 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 207 262 1.3E-21 T 31-10-2018 IPR019220 Domain of unknown function DUF2135 Y89_4977 70baf84a3116e77348781c9cd7775a9d 277 PIRSF PIRSF012281 13 276 1.1E-130 T 31-10-2018 IPR012039 Uncharacterised conserved protein UCP012281 Y89_4977 70baf84a3116e77348781c9cd7775a9d 277 Gene3D G3DSA:2.60.120.380 129 231 1.1E-5 T 31-10-2018 Y89_0461 28704e1ce7c27a53532e17b8150561d1 416 Gene3D G3DSA:1.10.4160.10 2 413 6.8E-44 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_0461 28704e1ce7c27a53532e17b8150561d1 416 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 397 8.9E-60 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_3418 3bb159b1cf7ecdd3ef0777d271bed25a 178 Gene3D G3DSA:3.30.428.10 4 119 1.1E-13 T 31-10-2018 IPR036265 HIT-like superfamily Y89_3418 3bb159b1cf7ecdd3ef0777d271bed25a 178 SUPERFAMILY SSF54197 3 109 2.34E-16 T 31-10-2018 IPR036265 HIT-like superfamily Y89_3648 f3b458e869e09fb4710594a7e17b7de8 63 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 56 1.0E-11 T 31-10-2018 IPR027379 Cardiolipin synthase N-terminal Y89_4399 e592c886509a5638cc18f50471e54688 135 Pfam PF03061 Thioesterase superfamily 46 120 7.3E-15 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_4399 e592c886509a5638cc18f50471e54688 135 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 132 2.6E-14 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Y89_4399 e592c886509a5638cc18f50471e54688 135 SUPERFAMILY SSF54637 2 133 9.61E-27 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4399 e592c886509a5638cc18f50471e54688 135 Gene3D G3DSA:3.10.129.10 2 135 1.4E-46 T 31-10-2018 Y89_2545 2616b8d21df233289610644fc829e71d 555 Pfam PF06980 Protein of unknown function (DUF1302) 33 555 2.5E-117 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 Gene3D G3DSA:3.40.50.720 4 245 9.7E-71 T 31-10-2018 Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 3.2E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 9.8E-52 T 31-10-2018 Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.3E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_5824 15dc52e09b588afee068ebbd8a1ac832 245 SUPERFAMILY SSF51735 4 245 8.63E-66 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2095 267423da8b5a2179ca4c055588165006 443 Gene3D G3DSA:3.40.50.1820 5 193 8.8E-13 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2095 267423da8b5a2179ca4c055588165006 443 SUPERFAMILY SSF53474 3 140 1.13E-18 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3028 583666cbdf83908f5701c00dd8b6b092 325 SUPERFAMILY SSF46689 275 324 4.48E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3028 583666cbdf83908f5701c00dd8b6b092 325 Gene3D G3DSA:1.10.10.60 222 324 1.3E-18 T 31-10-2018 Y89_3028 583666cbdf83908f5701c00dd8b6b092 325 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 53 193 3.8E-10 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_3028 583666cbdf83908f5701c00dd8b6b092 325 SMART SM00342 239 321 1.7E-16 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3028 583666cbdf83908f5701c00dd8b6b092 325 Pfam PF12833 Helix-turn-helix domain 246 322 6.0E-15 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_3208 29d276506bed428ec92becf1fbd66a4d 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 173 8.0E-22 T 31-10-2018 Y89_3208 29d276506bed428ec92becf1fbd66a4d 222 SUPERFAMILY SSF56784 1 194 1.03E-42 T 31-10-2018 IPR036412 HAD-like superfamily Y89_3208 29d276506bed428ec92becf1fbd66a4d 222 Gene3D G3DSA:3.40.50.1000 1 176 1.6E-44 T 31-10-2018 IPR023214 HAD superfamily Y89_3208 29d276506bed428ec92becf1fbd66a4d 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 53 172 8.1E-19 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_3208 29d276506bed428ec92becf1fbd66a4d 222 Gene3D G3DSA:1.10.150.240 9 72 1.6E-44 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_4298 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 232 256 2.0E-12 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4298 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 377 403 2.0E-12 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4298 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 159 183 2.0E-12 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4298 600cde6d9741e25b87c61e302d50b7bc 499 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 129 148 2.0E-12 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4298 600cde6d9741e25b87c61e302d50b7bc 499 Pfam PF00361 Proton-conducting membrane transporter 124 417 6.4E-41 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_4350 6b33797cfb11a8222a7b9fc1f42ab3e6 357 Pfam PF01594 AI-2E family transporter 20 345 1.9E-72 T 31-10-2018 IPR002549 Transmembrane protein TqsA-like Y89_1523 a422b3c7fa8e259799dc9eff4b74b82b 266 Pfam PF14257 Domain of unknown function (DUF4349) 25 250 3.5E-24 T 31-10-2018 IPR025645 Domain of unknown function DUF4349 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 PIRSF PIRSF016578 4 194 1.9E-13 T 31-10-2018 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 PIRSF PIRSF016578 217 375 9.8E-12 T 31-10-2018 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 SUPERFAMILY SSF47203 225 375 6.93E-58 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Gene3D G3DSA:1.10.540.10 2 118 1.1E-44 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Gene3D G3DSA:2.40.110.10 119 232 9.0E-43 T 31-10-2018 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 SUPERFAMILY SSF56645 5 240 1.18E-84 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Gene3D G3DSA:1.20.140.10 233 375 3.2E-55 T 31-10-2018 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 2.6E-51 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 115 1.9E-37 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Y89_2638 b6ffbafa1970a9fe1756e8517278f1cc 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 3.1E-27 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Y89_3605 356f3a3dadef5372d1f3352c1605cc17 113 Pfam PF06877 Regulator of ribonuclease activity B 9 104 7.5E-21 T 31-10-2018 IPR009671 Regulator of ribonuclease activity B domain Y89_3605 356f3a3dadef5372d1f3352c1605cc17 113 SUPERFAMILY SSF89946 5 107 3.4E-23 T 31-10-2018 IPR036701 RraB-like superfamily Y89_2781 93b11117784a2127257190939c3d8658 226 Gene3D G3DSA:3.40.50.850 9 215 1.8E-49 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_2781 93b11117784a2127257190939c3d8658 226 Pfam PF00857 Isochorismatase family 20 172 5.7E-21 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_2781 93b11117784a2127257190939c3d8658 226 SUPERFAMILY SSF52499 12 209 3.92E-47 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_0750 82b085c3289986888f34905f67156a75 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.953 T 31-10-2018 IPR022973 Ribosomal protein L10 Y89_0750 82b085c3289986888f34905f67156a75 166 Pfam PF00466 Ribosomal protein L10 6 101 2.6E-26 T 31-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Y89_0750 82b085c3289986888f34905f67156a75 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 31-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0750 82b085c3289986888f34905f67156a75 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 75 154 1.0E-5 T 31-10-2018 Y89_0750 82b085c3289986888f34905f67156a75 166 SUPERFAMILY SSF160369 4 160 2.35E-49 T 31-10-2018 Y89_0750 82b085c3289986888f34905f67156a75 166 Gene3D G3DSA:3.30.70.1730 1 124 3.5E-35 T 31-10-2018 Y89_4687 addc96d102fd0887f5acfa88e8c6e2ff 919 Pfam PF01526 Tn3 transposase DDE domain 580 911 9.0E-134 T 31-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Y89_4687 addc96d102fd0887f5acfa88e8c6e2ff 919 Pfam PF13700 Domain of unknown function (DUF4158) 6 169 5.5E-54 T 31-10-2018 IPR025296 Domain of unknown function DUF4158 Y89_6382 1279e37779170e0d7a68ccad2ad42b94 166 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 63 166 3.0E-39 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_6382 1279e37779170e0d7a68ccad2ad42b94 166 Pfam PF11072 Protein of unknown function (DUF2859) 26 163 1.0E-42 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_5112 1279e37779170e0d7a68ccad2ad42b94 166 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 63 166 3.0E-39 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_5112 1279e37779170e0d7a68ccad2ad42b94 166 Pfam PF11072 Protein of unknown function (DUF2859) 26 163 1.0E-42 T 31-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Y89_0497 c029f74494d73df4dcb9680c63d55bf9 575 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 109 530 4.9E-78 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_0497 c029f74494d73df4dcb9680c63d55bf9 575 Gene3D G3DSA:1.10.4160.10 95 563 1.5E-106 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_1843 5f043979f27bf21583250206159d71e2 246 SUPERFAMILY SSF51735 12 243 3.85E-59 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1843 5f043979f27bf21583250206159d71e2 246 Pfam PF00106 short chain dehydrogenase 15 207 2.3E-49 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1843 5f043979f27bf21583250206159d71e2 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1843 5f043979f27bf21583250206159d71e2 246 Gene3D G3DSA:3.40.50.720 1 245 9.5E-71 T 31-10-2018 Y89_1843 5f043979f27bf21583250206159d71e2 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.5E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1843 5f043979f27bf21583250206159d71e2 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.5E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1843 5f043979f27bf21583250206159d71e2 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.5E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1843 5f043979f27bf21583250206159d71e2 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.5E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_1843 5f043979f27bf21583250206159d71e2 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 1.5E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4281 3cbd73cc73c643a2d3d774a501642052 307 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 291 2.6E-54 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 Pfam PF12833 Helix-turn-helix domain 209 287 1.5E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 Gene3D G3DSA:1.10.10.60 246 296 9.2E-13 T 31-10-2018 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 SUPERFAMILY SSF46689 239 287 1.88E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 SUPERFAMILY SSF46689 187 237 1.49E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 SMART SM00342 203 286 3.7E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2391 9c221d7d9260495d92c4ff42ee2cd38d 297 Gene3D G3DSA:1.10.10.60 187 245 8.9E-16 T 31-10-2018 Y89_4307 620c9987d9d17a4b71e620b0fc1c8685 293 Gene3D G3DSA:3.30.1330.60 138 287 1.3E-30 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4307 620c9987d9d17a4b71e620b0fc1c8685 293 Pfam PF00691 OmpA family 195 274 1.3E-13 T 31-10-2018 IPR006665 OmpA-like domain Y89_4307 620c9987d9d17a4b71e620b0fc1c8685 293 SUPERFAMILY SSF103088 168 280 6.28E-26 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_3217 80cf46d1449553ce55d552dd95939ecd 602 PIRSF PIRSF002741 5 594 3.9E-104 T 31-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Y89_3217 80cf46d1449553ce55d552dd95939ecd 602 SUPERFAMILY SSF53850 48 590 7.96E-116 T 31-10-2018 Y89_3217 80cf46d1449553ce55d552dd95939ecd 602 Gene3D G3DSA:3.10.105.10 311 569 1.9E-239 T 31-10-2018 Y89_3217 80cf46d1449553ce55d552dd95939ecd 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 505 2.6E-70 T 31-10-2018 IPR000914 Solute-binding protein family 5 domain Y89_3217 80cf46d1449553ce55d552dd95939ecd 602 Gene3D G3DSA:3.40.190.10 24 589 1.9E-239 T 31-10-2018 Y89_5317 c0a18ba28bc545e8112d1c635ed60053 295 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 53 247 6.6E-43 T 31-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN Y89_5317 c0a18ba28bc545e8112d1c635ed60053 295 Gene3D G3DSA:3.40.50.11550 41 261 4.5E-67 T 31-10-2018 Y89_5317 c0a18ba28bc545e8112d1c635ed60053 295 Gene3D G3DSA:1.10.8.760 159 215 4.5E-67 T 31-10-2018 Y89_5317 c0a18ba28bc545e8112d1c635ed60053 295 SUPERFAMILY SSF159501 35 280 3.61E-67 T 31-10-2018 Y89_5317 c0a18ba28bc545e8112d1c635ed60053 295 PIRSF PIRSF020419 1 293 2.6E-130 T 31-10-2018 IPR016773 Ferric uptake regulator, CjrA, predicted Y89_1655 99f8c2891a41945fc19cbcf4f838babe 203 SUPERFAMILY SSF53448 16 199 1.13E-26 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1655 99f8c2891a41945fc19cbcf4f838babe 203 Gene3D G3DSA:3.90.550.10 5 200 1.8E-44 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1655 99f8c2891a41945fc19cbcf4f838babe 203 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 45 159 3.3E-29 T 31-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Y89_1655 99f8c2891a41945fc19cbcf4f838babe 203 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 8 193 1.9E-40 T 31-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Y89_4549 0fde941044abccac6426b129f76cb7d5 157 SUPERFAMILY SSF55961 10 139 3.47E-22 T 31-10-2018 Y89_4549 0fde941044abccac6426b129f76cb7d5 157 Gene3D G3DSA:3.30.530.20 9 148 1.1E-27 T 31-10-2018 IPR023393 START-like domain superfamily Y89_4549 0fde941044abccac6426b129f76cb7d5 157 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 18 139 1.7E-15 T 31-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like Y89_5793 f89401f9d2c656831bdabb8bec1de0cd 173 Pfam PF13511 Domain of unknown function (DUF4124) 7 57 8.4E-15 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_2041 b3ccbc568c222a5fd3217677bab343ac 254 Gene3D G3DSA:3.90.550.10 1 254 2.9E-99 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_2041 b3ccbc568c222a5fd3217677bab343ac 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 246 2.5E-93 T 31-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Y89_2041 b3ccbc568c222a5fd3217677bab343ac 254 Pfam PF02348 Cytidylyltransferase 7 226 9.5E-56 T 31-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Y89_2041 b3ccbc568c222a5fd3217677bab343ac 254 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 3 253 43.994 T 31-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Y89_2041 b3ccbc568c222a5fd3217677bab343ac 254 SUPERFAMILY SSF53448 5 251 1.6E-60 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 SUPERFAMILY SSF54534 48 125 3.66E-16 T 31-10-2018 Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 Gene3D G3DSA:3.10.50.30 45 134 6.9E-30 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 Gene3D G3DSA:1.10.286.20 1 43 1.5E-8 T 31-10-2018 Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 Pfam PF14760 Rnk N-terminus 4 43 4.7E-15 T 31-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 PIRSF PIRSF006092 27 126 7.4E-24 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 PIRSF PIRSF006092 1 30 74.0 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Y89_5963 e17b249327d3b6e53a338b0b8c34daf5 134 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 6.9E-20 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Y89_4691 f95f68025ae6d10758cd7ed7f5b4b19f 177 Pfam PF10706 Aminoglycoside-2''-adenylyltransferase 1 174 3.5E-105 T 31-10-2018 IPR019646 Aminoglycoside-2''-adenylyltransferase Y89_4691 f95f68025ae6d10758cd7ed7f5b4b19f 177 Gene3D G3DSA:3.30.460.40 1 177 5.5E-85 T 31-10-2018 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 SUPERFAMILY SSF64518 492 683 3.27E-20 T 31-10-2018 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 PRINTS PR01005 Flagellar hook-associated protein signature 362 384 3.6E-14 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 3.6E-14 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 3.6E-14 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 3.6E-14 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 3.6E-14 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 346 1.3E-76 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Y89_4268 36abe0d81695db48eaec5c79a1292601 683 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 619 680 3.7E-10 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y89_4268 36abe0d81695db48eaec5c79a1292601 683 SUPERFAMILY SSF64518 135 457 8.11E-17 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 475 489 5.7E-5 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 511 527 5.7E-5 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 Pfam PF00425 chorismate binding enzyme 122 381 5.0E-47 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Y89_3421 ea17d821db492f64335cf120be004a1b 627 SUPERFAMILY SSF52317 437 624 1.12E-22 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 511 522 2.8E-9 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 478 487 2.8E-9 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00096 Glutamine amidotransferase superfamily signature 597 610 2.8E-9 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 Gene3D G3DSA:3.60.120.10 2 391 3.5E-134 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_3421 ea17d821db492f64335cf120be004a1b 627 Gene3D G3DSA:3.40.50.880 436 625 2.6E-46 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_3421 ea17d821db492f64335cf120be004a1b 627 Pfam PF00117 Glutamine amidotransferase class-I 439 618 1.6E-25 T 31-10-2018 IPR017926 Glutamine amidotransferase Y89_3421 ea17d821db492f64335cf120be004a1b 627 SUPERFAMILY SSF56322 66 390 1.44E-66 T 31-10-2018 IPR005801 ADC synthase GO:0009058 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00097 Anthranilate synthase component II signature 511 522 3.6E-8 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00097 Anthranilate synthase component II signature 597 610 3.6E-8 T 31-10-2018 Y89_3421 ea17d821db492f64335cf120be004a1b 627 PRINTS PR00097 Anthranilate synthase component II signature 437 451 3.6E-8 T 31-10-2018 Y89_6347 df29a66a7c3a6a89be0322f1eb08e42c 162 PIRSF PIRSF002070 1 160 7.1E-18 T 31-10-2018 Y89_6347 df29a66a7c3a6a89be0322f1eb08e42c 162 SUPERFAMILY SSF50249 4 162 2.02E-29 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_6347 df29a66a7c3a6a89be0322f1eb08e42c 162 Gene3D G3DSA:2.40.50.140 4 154 8.9E-23 T 31-10-2018 Y89_6347 df29a66a7c3a6a89be0322f1eb08e42c 162 Pfam PF00436 Single-strand binding protein family 5 110 1.5E-12 T 31-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y89_6347 df29a66a7c3a6a89be0322f1eb08e42c 162 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 8 161 1.1E-16 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 Gene3D G3DSA:3.40.50.300 45 184 1.9E-11 T 31-10-2018 Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 239 418 7.5E-31 T 31-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 SUPERFAMILY SSF52540 8 194 1.77E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 SUPERFAMILY SSF52317 235 428 1.92E-31 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 9 187 5.9E-13 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 Gene3D G3DSA:3.40.50.880 237 414 7.0E-11 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 6 421 39.158 T 31-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Y89_4077 c584181d88abb7a7bf30c3eef4db4113 435 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 10 430 4.2E-82 T 31-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Y89_3352 3a45dac55b72a1cd3df88a4de4fe89d3 567 SUPERFAMILY SSF53649 234 535 4.14E-23 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_3352 3a45dac55b72a1cd3df88a4de4fe89d3 567 Pfam PF00884 Sulfatase 233 521 8.3E-53 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_3352 3a45dac55b72a1cd3df88a4de4fe89d3 567 Gene3D G3DSA:3.40.720.10 219 547 1.0E-84 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_3352 3a45dac55b72a1cd3df88a4de4fe89d3 567 Pfam PF08019 Domain of unknown function (DUF1705) 54 203 3.0E-52 T 31-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Y89_4096 a3e7d88add630fbbee20d630a0df0de2 344 Gene3D G3DSA:3.10.310.10 8 333 1.5E-109 T 31-10-2018 Y89_4096 a3e7d88add630fbbee20d630a0df0de2 344 PIRSF PIRSF029792 1 336 1.7E-116 T 31-10-2018 IPR008794 Proline racemase family Y89_4096 a3e7d88add630fbbee20d630a0df0de2 344 Gene3D G3DSA:3.10.310.10 144 311 1.5E-109 T 31-10-2018 Y89_4096 a3e7d88add630fbbee20d630a0df0de2 344 Pfam PF05544 Proline racemase 9 334 9.3E-140 T 31-10-2018 IPR008794 Proline racemase family Y89_4096 a3e7d88add630fbbee20d630a0df0de2 344 SUPERFAMILY SSF54506 1 333 4.71E-109 T 31-10-2018 Y89_0151 391542e997b54db9f0d3f8f6c2dfe289 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 282 5.4E-38 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_0859 6440f6fa77379d524e4d0cf81d8c6f85 569 Pfam PF01425 Amidase 459 544 4.4E-6 T 31-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_0859 6440f6fa77379d524e4d0cf81d8c6f85 569 Pfam PF01425 Amidase 25 291 5.5E-45 T 31-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_0859 6440f6fa77379d524e4d0cf81d8c6f85 569 Gene3D G3DSA:3.90.1300.10 1 565 8.4E-100 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_0859 6440f6fa77379d524e4d0cf81d8c6f85 569 SUPERFAMILY SSF75304 1 561 2.35E-89 T 31-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 Pfam PF00005 ABC transporter 22 181 5.4E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 SMART SM00382 30 231 2.0E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 1.9E-10 T 31-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 SUPERFAMILY SSF52540 4 253 2.24E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4283 c9fd75a3d4673a2c884c3a9599a111c6 255 Gene3D G3DSA:3.40.50.300 4 254 1.9E-61 T 31-10-2018 Y89_6101 77ef3dabcf9509a9d627e8c33e4c0748 299 Pfam PF13511 Domain of unknown function (DUF4124) 11 44 2.1E-10 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_6101 77ef3dabcf9509a9d627e8c33e4c0748 299 Pfam PF01551 Peptidase family M23 177 271 2.6E-24 T 31-10-2018 IPR016047 Peptidase M23 Y89_6101 77ef3dabcf9509a9d627e8c33e4c0748 299 SUPERFAMILY SSF51261 159 271 5.75E-30 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_6101 77ef3dabcf9509a9d627e8c33e4c0748 299 Gene3D G3DSA:2.70.70.10 152 285 1.6E-35 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_3437 1e719d244dc4ec1b2eb16b0567a52a9b 469 Gene3D G3DSA:3.40.50.1820 70 291 6.4E-7 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3437 1e719d244dc4ec1b2eb16b0567a52a9b 469 SUPERFAMILY SSF53474 76 225 9.76E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0181 672f18d69867a468f86340a833e7224e 275 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 97 259 4.9E-49 T 31-10-2018 IPR000160 GGDEF domain Y89_0181 672f18d69867a468f86340a833e7224e 275 SUPERFAMILY SSF55073 105 259 1.02E-45 T 31-10-2018 IPR029787 Nucleotide cyclase Y89_0181 672f18d69867a468f86340a833e7224e 275 Gene3D G3DSA:3.30.70.270 95 261 6.4E-55 T 31-10-2018 Y89_0181 672f18d69867a468f86340a833e7224e 275 Pfam PF00990 Diguanylate cyclase, GGDEF domain 101 255 6.5E-45 T 31-10-2018 IPR000160 GGDEF domain Y89_0181 672f18d69867a468f86340a833e7224e 275 SMART SM00267 89 260 2.6E-56 T 31-10-2018 IPR000160 GGDEF domain Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 Gene3D G3DSA:1.10.150.130 91 198 9.6E-8 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 Pfam PF13356 Arm DNA-binding domain 6 78 4.7E-8 T 31-10-2018 IPR025166 Integrase, DNA-binding domain Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 Pfam PF00589 Phage integrase family 251 393 9.4E-33 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 Gene3D G3DSA:1.10.443.10 224 404 2.1E-46 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 Gene3D G3DSA:3.30.160.390 3 81 9.4E-7 T 31-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Y89_5011 3e3455adb0b72f7e9ab8c583cc7e0022 404 SUPERFAMILY SSF56349 96 401 7.85E-58 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_2500 e1b690c0ad3ab50f52300ce40bcaf9a4 342 SUPERFAMILY SSF46689 280 329 2.11E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2500 e1b690c0ad3ab50f52300ce40bcaf9a4 342 SMART SM00342 245 327 9.2E-20 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2500 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Pfam PF12833 Helix-turn-helix domain 251 328 2.6E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_2500 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 43 198 2.9E-15 T 31-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Y89_2500 e1b690c0ad3ab50f52300ce40bcaf9a4 342 Gene3D G3DSA:1.10.10.60 229 336 1.4E-22 T 31-10-2018 Y89_1141 52d3b17e26582e978685178a42b4bac0 218 Pfam PF03162 Tyrosine phosphatase family 51 164 9.9E-10 T 31-10-2018 IPR004861 Atypical dual-specificity phosphatase Siw14-like Y89_1141 52d3b17e26582e978685178a42b4bac0 218 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 130 140 - T 31-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 Y89_1141 52d3b17e26582e978685178a42b4bac0 218 SUPERFAMILY SSF52799 44 165 1.5E-23 T 31-10-2018 IPR029021 Protein-tyrosine phosphatase-like Y89_1141 52d3b17e26582e978685178a42b4bac0 218 Gene3D G3DSA:3.90.190.10 35 195 1.1E-43 T 31-10-2018 IPR029021 Protein-tyrosine phosphatase-like Y89_0867 65cde95b63427273f2a6ab3c0931395e 435 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 20 428 8.5E-110 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_0867 65cde95b63427273f2a6ab3c0931395e 435 SUPERFAMILY SSF51679 4 433 4.19E-103 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_0867 65cde95b63427273f2a6ab3c0931395e 435 PIRSF PIRSF000337 2 435 1.2E-150 T 31-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 Y89_0867 65cde95b63427273f2a6ab3c0931395e 435 Gene3D G3DSA:3.20.20.30 1 435 5.9E-110 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_0867 65cde95b63427273f2a6ab3c0931395e 435 Pfam PF00296 Luciferase-like monooxygenase 34 387 3.1E-51 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_1480 3c5fa5e7faad31e0fcfb4e9208878ee2 367 Gene3D G3DSA:1.50.10.100 28 362 3.5E-120 T 31-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Y89_1480 3c5fa5e7faad31e0fcfb4e9208878ee2 367 Pfam PF05426 Alginate lyase 63 303 7.2E-59 T 31-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 Y89_1480 3c5fa5e7faad31e0fcfb4e9208878ee2 367 Hamap MF_00557 Alginate lyase [algL]. 5 367 55.74 T 31-10-2018 IPR022859 Alginate lyase GO:0042122|GO:0042597|GO:0045135 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 Y89_1480 3c5fa5e7faad31e0fcfb4e9208878ee2 367 SUPERFAMILY SSF48230 30 361 1.46E-62 T 31-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Y89_3846 690ba5ab9633c6e3e30bc54f24363d78 118 Pfam PF09152 Domain of unknown function (DUF1937) 2 112 1.3E-48 T 31-10-2018 IPR015235 Domain of unknown function DUF1937 Y89_3846 690ba5ab9633c6e3e30bc54f24363d78 118 Gene3D G3DSA:3.40.50.10400 1 118 3.4E-50 T 31-10-2018 IPR027269 Hypothetical PA1492 domain superfamily Y89_3846 690ba5ab9633c6e3e30bc54f24363d78 118 SUPERFAMILY SSF52309 1 117 1.37E-41 T 31-10-2018 Y89_6016 1ff1416d53a2504dcbbfe60761b50e99 484 Pfam PF11855 Protein of unknown function (DUF3375) 12 469 1.5E-119 T 31-10-2018 IPR021804 Protein of unknown function DUF3375 Y89_2252 48e43271b9a3c57ab1753aedae068578 325 Gene3D G3DSA:3.90.70.10 48 191 2.5E-11 T 31-10-2018 Y89_2252 48e43271b9a3c57ab1753aedae068578 325 SUPERFAMILY SSF48452 203 297 6.7E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2252 48e43271b9a3c57ab1753aedae068578 325 Pfam PF13529 Peptidase_C39 like family 42 150 7.9E-8 T 31-10-2018 IPR039564 Peptidase C39-like Y89_2252 48e43271b9a3c57ab1753aedae068578 325 Gene3D G3DSA:1.25.40.10 195 312 2.6E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5008 46a67458ac756cc51947718a5fe54aa5 188 SMART SM00644 18 169 1.6E-60 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_5008 46a67458ac756cc51947718a5fe54aa5 188 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 169 9.0E-27 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_5008 46a67458ac756cc51947718a5fe54aa5 188 Gene3D G3DSA:3.40.80.10 5 187 2.6E-57 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_5008 46a67458ac756cc51947718a5fe54aa5 188 SUPERFAMILY SSF55846 7 181 8.51E-65 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 PIRSF PIRSF003078 5 214 1.2E-60 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 209 27.9 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 Gene3D G3DSA:3.40.50.150 1 214 2.1E-68 T 31-10-2018 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 Pfam PF02527 rRNA small subunit methyltransferase G 28 207 1.3E-62 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 32 211 8.5E-58 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Y89_6304 4e828824a2364c7d328db8e624fa7594 214 SUPERFAMILY SSF53335 13 212 3.28E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 55.391 T 31-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.30.470.80 182 296 2.3E-42 T 31-10-2018 Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.30.1490.20 115 181 1.5E-26 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 285 8.0E-87 T 31-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 Pfam PF08443 RimK-like ATP-grasp domain 98 286 9.9E-69 T 31-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 Gene3D G3DSA:3.40.50.20 1 114 6.6E-39 T 31-10-2018 Y89_5884 76b6eb5280add0950e381fc6160ab8df 301 SUPERFAMILY SSF56059 98 288 9.43E-50 T 31-10-2018 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 SMART SM01409 8 61 4.8E-17 T 31-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 8.0E-23 T 31-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.792 T 31-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 SUPERFAMILY SSF63562 1 77 2.79E-25 T 31-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 Pfam PF01192 RNA polymerase Rpb6 8 59 4.7E-17 T 31-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Y89_6075 2f7b9e0750b55a019522f844daf10501 88 Gene3D G3DSA:3.90.940.10 1 86 3.5E-26 T 31-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Y89_3847 8e9bfe47c4cf116f9a9f2ad2707de182 411 Pfam PF04346 Ethanolamine utilisation protein, EutH 5 384 2.7E-116 T 31-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Y89_3847 8e9bfe47c4cf116f9a9f2ad2707de182 411 PIRSF PIRSF019466 2 407 6.1E-136 T 31-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Y89_4026 0ea909f1ee7353eac7c522805bd1b83d 170 Gene3D G3DSA:2.60.40.10 63 167 3.6E-5 T 31-10-2018 IPR013783 Immunoglobulin-like fold Y89_4026 0ea909f1ee7353eac7c522805bd1b83d 170 SUPERFAMILY SSF117074 14 169 2.35E-35 T 31-10-2018 Y89_6194 85d010fb479e34b496b58f4759483e47 323 SUPERFAMILY SSF51735 3 319 9.68E-75 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6194 85d010fb479e34b496b58f4759483e47 323 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 4 319 2.3E-127 T 31-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Y89_6194 85d010fb479e34b496b58f4759483e47 323 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 312 2.5E-122 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_6194 85d010fb479e34b496b58f4759483e47 323 Gene3D G3DSA:3.90.25.10 186 317 8.2E-136 T 31-10-2018 Y89_6194 85d010fb479e34b496b58f4759483e47 323 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 322 53.111 T 31-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Y89_6194 85d010fb479e34b496b58f4759483e47 323 Gene3D G3DSA:3.40.50.720 5 303 8.2E-136 T 31-10-2018 Y89_2387 cd03aeec6ae18aac7808e6dc91572f98 435 Pfam PF03573 outer membrane porin, OprD family 36 432 3.0E-137 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_2387 cd03aeec6ae18aac7808e6dc91572f98 435 Gene3D G3DSA:2.40.160.10 36 432 4.5E-132 T 31-10-2018 IPR023614 Porin domain superfamily Y89_4492 11ea892646418828f5751d37ba9fc154 127 Gene3D G3DSA:2.40.128.200 41 127 2.8E-31 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily Y89_4492 11ea892646418828f5751d37ba9fc154 127 SUPERFAMILY SSF141488 43 117 1.83E-20 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily Y89_4492 11ea892646418828f5751d37ba9fc154 127 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 49 115 2.2E-21 T 31-10-2018 IPR018660 C-type lysozyme inhibitor Y89_5214 32d330268378b897713161652821c056 688 Pfam PF02554 Carbon starvation protein CstA 35 411 9.5E-169 T 31-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 Y89_5214 32d330268378b897713161652821c056 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 466 594 1.3E-35 T 31-10-2018 IPR025299 CstA, C-terminal domain Y89_5303 e29f81b2ebd405bdb8b0df151ad24f78 202 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 1 195 20.065 T 31-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 Y89_5303 e29f81b2ebd405bdb8b0df151ad24f78 202 Pfam PF01794 Ferric reductase like transmembrane component 43 154 1.2E-16 T 31-10-2018 IPR013130 Ferric reductase transmembrane component-like domain Y89_5727 a116e7fe727122180ca8d6e3e5f14531 123 Gene3D G3DSA:3.30.2020.30 1 93 5.4E-20 T 31-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 Y89_5727 a116e7fe727122180ca8d6e3e5f14531 123 Pfam PF06155 Protein of unknown function (DUF971) 7 88 1.1E-23 T 31-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 Y89_5753 b15cdaa089873c05ab01301cb1fabc6a 158 SUPERFAMILY SSF55811 5 133 8.53E-20 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5753 b15cdaa089873c05ab01301cb1fabc6a 158 Gene3D G3DSA:3.90.79.10 2 145 1.7E-23 T 31-10-2018 Y89_5753 b15cdaa089873c05ab01301cb1fabc6a 158 Pfam PF00293 NUDIX domain 9 127 2.3E-11 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_3586 2755af2505e318438ee9ca2f5c92e0a1 168 Pfam PF01661 Macro domain 28 137 4.0E-6 T 31-10-2018 IPR002589 Macro domain Y89_3586 2755af2505e318438ee9ca2f5c92e0a1 168 SUPERFAMILY SSF52949 1 155 3.36E-32 T 31-10-2018 Y89_3586 2755af2505e318438ee9ca2f5c92e0a1 168 Gene3D G3DSA:3.40.220.10 1 156 1.8E-25 T 31-10-2018 Y89_3586 2755af2505e318438ee9ca2f5c92e0a1 168 SMART SM00506 1 140 3.2E-5 T 31-10-2018 IPR002589 Macro domain Y89_0961 2d796d62d0cc59b181a3dc64464f35ab 234 Pfam PF00005 ABC transporter 24 178 2.5E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0961 2d796d62d0cc59b181a3dc64464f35ab 234 Gene3D G3DSA:3.40.50.300 1 228 4.3E-54 T 31-10-2018 Y89_0961 2d796d62d0cc59b181a3dc64464f35ab 234 SMART SM00382 30 226 2.4E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0961 2d796d62d0cc59b181a3dc64464f35ab 234 SUPERFAMILY SSF52540 4 223 2.77E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 Pfam PF05193 Peptidase M16 inactive domain 193 359 5.9E-16 T 31-10-2018 IPR007863 Peptidase M16, C-terminal Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 SUPERFAMILY SSF63411 254 432 6.97E-17 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 SUPERFAMILY SSF63411 24 229 1.51E-27 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 Gene3D G3DSA:3.30.830.10 245 423 5.8E-20 T 31-10-2018 Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 Gene3D G3DSA:3.30.830.10 20 242 1.8E-34 T 31-10-2018 Y89_6215 c5149c8322954deb7de75df7a4ec4a36 457 Pfam PF00675 Insulinase (Peptidase family M16) 36 149 3.8E-14 T 31-10-2018 IPR011765 Peptidase M16, N-terminal Y89_0580 e0b283e903cc2f7780a6e83435ee7b11 255 Gene3D G3DSA:3.40.50.150 10 242 1.4E-36 T 31-10-2018 Y89_0580 e0b283e903cc2f7780a6e83435ee7b11 255 SUPERFAMILY SSF53335 15 207 5.11E-35 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_0580 e0b283e903cc2f7780a6e83435ee7b11 255 Pfam PF08241 Methyltransferase domain 47 135 3.2E-16 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_1657 e3bc66c30207174e02988d8852d86363 156 Pfam PF05130 FlgN protein 2 145 1.6E-31 T 31-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Y89_1657 e3bc66c30207174e02988d8852d86363 156 Gene3D G3DSA:1.20.58.300 1 130 7.8E-46 T 31-10-2018 Y89_1657 e3bc66c30207174e02988d8852d86363 156 SUPERFAMILY SSF140566 6 130 3.4E-29 T 31-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 Y89_3442 1385402fb5c17be059ed0d23a6c69830 132 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 121 2.1E-29 T 31-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3442 1385402fb5c17be059ed0d23a6c69830 132 Gene3D G3DSA:1.20.58.1610 2 122 7.3E-36 T 31-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3442 1385402fb5c17be059ed0d23a6c69830 132 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 5 122 18.712 T 31-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Y89_1211 1df965c74fe08cf678ff5c2716a1800a 163 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 4.5E-47 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type Y89_1211 1df965c74fe08cf678ff5c2716a1800a 163 SUPERFAMILY SSF46785 2 132 1.82E-36 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1211 1df965c74fe08cf678ff5c2716a1800a 163 Gene3D G3DSA:1.10.10.10 1 144 2.0E-53 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1211 1df965c74fe08cf678ff5c2716a1800a 163 Pfam PF02082 Transcriptional regulator 1 83 8.0E-28 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type Y89_1211 1df965c74fe08cf678ff5c2716a1800a 163 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 5.7E-67 T 31-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 Y89_5124 2701fb576257f62a2f78a063a4659937 294 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 11 275 3.2E-113 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_5124 2701fb576257f62a2f78a063a4659937 294 Pfam PF11920 Protein of unknown function (DUF3438) 9 284 3.4E-120 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_1766 0407ed901f1676fb7ae612addc8e5d65 183 Gene3D G3DSA:3.40.630.30 2 176 2.5E-40 T 31-10-2018 Y89_1766 0407ed901f1676fb7ae612addc8e5d65 183 SUPERFAMILY SSF55729 5 174 2.71E-37 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_1766 0407ed901f1676fb7ae612addc8e5d65 183 Pfam PF13302 Acetyltransferase (GNAT) domain 20 150 5.8E-18 T 31-10-2018 IPR000182 GNAT domain Y89_3999 87df2812b826e6b8097d81c87fa3af47 249 Pfam PF05988 Bacterial protein of unknown function (DUF899) 6 234 1.8E-96 T 31-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like Y89_3999 87df2812b826e6b8097d81c87fa3af47 249 SUPERFAMILY SSF52833 61 200 4.93E-9 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3999 87df2812b826e6b8097d81c87fa3af47 249 Gene3D G3DSA:3.40.30.10 52 202 2.0E-6 T 31-10-2018 Y89_5136 12c01d4f14c3e12291807a509fb46d9d 510 Pfam PF07916 TraG-like protein, N-terminal region 10 484 1.8E-86 T 31-10-2018 IPR012931 TraG-like, N-terminal Y89_2281 ba0b109136fc137d690fceb46fb7ffd2 76 Gene3D G3DSA:1.10.10.1130 1 76 7.3E-29 T 31-10-2018 Y89_2281 ba0b109136fc137d690fceb46fb7ffd2 76 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 4.1E-29 T 31-10-2018 IPR021250 Protein of unknown function DUF2789 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.9E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 SUPERFAMILY SSF46785 1 110 6.98E-27 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 Pfam PF03466 LysR substrate binding domain 87 288 1.5E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 Gene3D G3DSA:3.40.190.290 91 293 6.1E-43 T 31-10-2018 Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 Gene3D G3DSA:1.10.10.10 1 89 6.7E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1897 84d599b7b8d2ef94e44a277360c99edd 297 SUPERFAMILY SSF53850 86 289 3.86E-44 T 31-10-2018 Y89_2789 c7afa1c2f68071d5f5411efb752b2205 254 Gene3D G3DSA:3.40.50.1820 5 237 2.5E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2789 c7afa1c2f68071d5f5411efb752b2205 254 SUPERFAMILY SSF53474 2 232 3.05E-44 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2789 c7afa1c2f68071d5f5411efb752b2205 254 Pfam PF00975 Thioesterase domain 7 230 3.2E-39 T 31-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 Y89_4369 88ae80ddb639be43cab2916bf23f0e47 134 Gene3D G3DSA:3.10.129.10 1 134 1.1E-25 T 31-10-2018 Y89_4369 88ae80ddb639be43cab2916bf23f0e47 134 SUPERFAMILY SSF54637 2 133 1.12E-29 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4369 88ae80ddb639be43cab2916bf23f0e47 134 Pfam PF03061 Thioesterase superfamily 20 105 8.2E-18 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_2377 20840bd263c9a6bb01631b8936d4a733 204 Pfam PF01810 LysE type translocator 15 203 1.8E-31 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_2377 20840bd263c9a6bb01631b8936d4a733 204 PIRSF PIRSF006324 1 204 1.8E-53 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_0364 c89522991f9bf1b6edb7147599976672 265 Gene3D G3DSA:3.40.50.150 16 185 3.5E-20 T 31-10-2018 Y89_0364 c89522991f9bf1b6edb7147599976672 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 27 164 2.2E-25 T 31-10-2018 IPR006342 Methyltransferase FkbM Y89_0364 c89522991f9bf1b6edb7147599976672 265 Pfam PF05050 Methyltransferase FkbM domain 29 176 8.4E-19 T 31-10-2018 IPR006342 Methyltransferase FkbM Y89_0364 c89522991f9bf1b6edb7147599976672 265 SUPERFAMILY SSF53335 17 191 3.32E-22 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_5503 876dee3149c1b10cd6d0ce88bf97d77c 284 SUPERFAMILY SSF103481 182 282 1.83E-15 T 31-10-2018 Y89_5503 876dee3149c1b10cd6d0ce88bf97d77c 284 SUPERFAMILY SSF103481 42 139 5.1E-13 T 31-10-2018 Y89_5503 876dee3149c1b10cd6d0ce88bf97d77c 284 Pfam PF00892 EamA-like transporter family 8 138 9.2E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5503 876dee3149c1b10cd6d0ce88bf97d77c 284 Pfam PF00892 EamA-like transporter family 151 279 3.0E-13 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3072 0fbde93dfd19ac117f24c49bae5018a7 506 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 9.9E-136 T 31-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Y89_2349 18f40f4aa6d9704c5ba4bfd26a023957 324 Pfam PF01844 HNH endonuclease 187 219 1.3E-5 T 31-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 Y89_2349 18f40f4aa6d9704c5ba4bfd26a023957 324 Gene3D G3DSA:3.30.40.60 182 235 1.2E-7 T 31-10-2018 Y89_0621 7efb977bff3bf36baf2cd3a8f0776f25 153 Pfam PF00959 Phage lysozyme 38 143 4.5E-21 T 31-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 Y89_0621 7efb977bff3bf36baf2cd3a8f0776f25 153 Gene3D G3DSA:1.10.530.40 5 152 1.3E-50 T 31-10-2018 Y89_0621 7efb977bff3bf36baf2cd3a8f0776f25 153 SUPERFAMILY SSF53955 9 152 1.02E-51 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_2209 bdf7a1caff6bec8f20527b26649dff0c 80 Pfam PF11747 Killing trait 11 76 7.1E-26 T 31-10-2018 IPR021070 Killing trait, RebB Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 17 234 5.6E-76 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 ProSitePatterns PS01218 TatC family signature. 162 181 - T 31-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 247 16.398 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 111 137 9.5E-50 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 16 43 9.5E-50 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 111 9.5E-50 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 162 190 9.5E-50 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_5742 d6b625479a4cfadf9713c04df8ab5205 267 Pfam PF00902 Sec-independent protein translocase protein (TatC) 20 229 2.0E-65 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Y89_4954 9c96050bcb591bc4db01df1bf5eb0666 154 Gene3D G3DSA:3.40.930.10 1 153 6.0E-50 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_4954 9c96050bcb591bc4db01df1bf5eb0666 154 SUPERFAMILY SSF55804 1 147 1.29E-41 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Y89_4954 9c96050bcb591bc4db01df1bf5eb0666 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 147 1.0E-34 T 31-10-2018 IPR002178 PTS EIIA type-2 domain Y89_4954 9c96050bcb591bc4db01df1bf5eb0666 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 149 8.8E-61 T 31-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 Y89_5323 8542b6bb878abe64ec8303937bcdf75e 107 Pfam PF00355 Rieske [2Fe-2S] domain 3 86 3.2E-11 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Y89_5323 8542b6bb878abe64ec8303937bcdf75e 107 Gene3D G3DSA:2.102.10.10 2 107 3.9E-16 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_5323 8542b6bb878abe64ec8303937bcdf75e 107 SUPERFAMILY SSF50022 4 106 3.93E-25 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Y89_3454 5ce885c0107cf6816c685e7715416240 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 372 395 1.6E-57 T 31-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y89_3454 5ce885c0107cf6816c685e7715416240 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 293 311 1.6E-57 T 31-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y89_3454 5ce885c0107cf6816c685e7715416240 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 244 265 1.6E-57 T 31-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y89_3454 5ce885c0107cf6816c685e7715416240 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 266 284 1.6E-57 T 31-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y89_3454 5ce885c0107cf6816c685e7715416240 418 PRINTS PR00933 B-lytic metalloendopeptidase (M23) signature 345 365 1.6E-57 T 31-10-2018 IPR000841 Peptidase M23A, B-lytic metalloendopeptidase GO:0004222|GO:0006508 Y89_3454 5ce885c0107cf6816c685e7715416240 418 Pfam PF01551 Peptidase family M23 286 366 3.0E-11 T 31-10-2018 IPR016047 Peptidase M23 Y89_3454 5ce885c0107cf6816c685e7715416240 418 Gene3D G3DSA:2.70.70.10 237 418 5.3E-53 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_3454 5ce885c0107cf6816c685e7715416240 418 SUPERFAMILY SSF51261 226 365 2.25E-17 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_0619 b456a5517e1370f3cae147a86923fbd4 95 Pfam PF10963 Phage tail assembly chaperone 7 88 3.3E-22 T 31-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 Y89_0619 b456a5517e1370f3cae147a86923fbd4 95 ProDom PD068655 ORF26 3'REGION LYS GENE PRECURSOR ORF30 SIGNAL PHAGE 7 87 4.0E-23 T 31-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 Y89_0744 9ada2e314d41f1ae42a572966cb087ba 234 Pfam PF05036 Sporulation related domain 78 148 1.6E-7 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 Y89_0744 9ada2e314d41f1ae42a572966cb087ba 234 SUPERFAMILY SSF110997 80 148 1.19E-8 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_0744 9ada2e314d41f1ae42a572966cb087ba 234 Gene3D G3DSA:3.30.70.1070 117 185 3.9E-5 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_0744 9ada2e314d41f1ae42a572966cb087ba 234 SUPERFAMILY SSF110997 157 223 6.02E-5 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_2827 5e2a46f66b8a8c33835b12605aeb4fe2 355 Pfam PF14891 Effector protein 239 325 7.4E-8 T 31-10-2018 IPR028208 Effector protein NleD-like Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 Gene3D G3DSA:3.40.50.10490 95 272 2.5E-40 T 31-10-2018 Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 SUPERFAMILY SSF46689 1 78 2.51E-22 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 77 2.4E-31 T 31-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 Pfam PF01380 SIS domain 125 253 2.5E-21 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 SUPERFAMILY SSF53697 93 273 3.27E-39 T 31-10-2018 Y89_1832 f99f4195d0a1b90054d55a1a97105cde 285 Gene3D G3DSA:1.10.10.10 1 80 1.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1667 1fc6fa6a49cd1d7467c33dea521d8fc2 338 Pfam PF10974 Protein of unknown function (DUF2804) 8 337 3.5E-81 T 31-10-2018 IPR021243 Protein of unknown function DUF2804 Y89_2936 0650aefbc3c25026d8e688b78dba7099 121 SUPERFAMILY SSF51182 29 117 2.89E-14 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2936 0650aefbc3c25026d8e688b78dba7099 121 Gene3D G3DSA:2.60.120.10 8 120 7.2E-17 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2936 0650aefbc3c25026d8e688b78dba7099 121 Pfam PF05899 Protein of unknown function (DUF861) 44 117 2.7E-17 T 31-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 PRINTS PR00412 Epoxide hydrolase signature 266 288 1.4E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 PRINTS PR00412 Epoxide hydrolase signature 42 60 1.4E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.4E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 Gene3D G3DSA:3.40.50.1820 12 292 6.2E-49 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 Pfam PF12697 Alpha/beta hydrolase family 38 283 6.6E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1578 279750b777bc01f0d2bb66c2b5a33f83 298 SUPERFAMILY SSF53474 13 288 2.98E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0289 8177fbe2c2c0e9d7a742f77272f374bc 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 69 2.9E-12 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_0289 8177fbe2c2c0e9d7a742f77272f374bc 94 SUPERFAMILY SSF54909 6 81 6.52E-10 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_0289 8177fbe2c2c0e9d7a742f77272f374bc 94 Gene3D G3DSA:3.30.70.100 2 90 4.5E-9 T 31-10-2018 Y89_1162 802630ddd837f72d31ef056cfcd2d087 315 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 7 309 1.1E-36 T 31-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y89_1162 802630ddd837f72d31ef056cfcd2d087 315 SUPERFAMILY SSF51735 6 313 8.79E-69 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1162 802630ddd837f72d31ef056cfcd2d087 315 Gene3D G3DSA:3.30.1780.10 11 311 7.9E-64 T 31-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Y89_1162 802630ddd837f72d31ef056cfcd2d087 315 PIRSF PIRSF001439 1 315 2.5E-53 T 31-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Y89_1162 802630ddd837f72d31ef056cfcd2d087 315 Gene3D G3DSA:3.40.50.720 126 296 7.9E-64 T 31-10-2018 Y89_0218 001cebb64f2c2e0a7b3b1b4066861275 287 Pfam PF01039 Carboxyl transferase domain 18 235 1.8E-14 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Y89_0218 001cebb64f2c2e0a7b3b1b4066861275 287 SUPERFAMILY SSF52096 4 236 8.71E-37 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_0218 001cebb64f2c2e0a7b3b1b4066861275 287 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 11 281 3.2E-117 T 31-10-2018 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 Y89_0218 001cebb64f2c2e0a7b3b1b4066861275 287 Gene3D G3DSA:3.90.226.10 3 240 3.8E-50 T 31-10-2018 Y89_0546 f1d2ed52272ab7234722215538727274 612 Gene3D G3DSA:3.40.50.410 422 601 1.8E-12 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_0546 f1d2ed52272ab7234722215538727274 612 SMART SM00327 421 604 3.4E-19 T 31-10-2018 IPR002035 von Willebrand factor, type A Y89_0546 f1d2ed52272ab7234722215538727274 612 SUPERFAMILY SSF53300 424 608 7.42E-18 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 Gene3D G3DSA:3.40.50.360 1 149 5.9E-39 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 Pfam PF00258 Flavodoxin 5 132 2.5E-19 T 31-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 SUPERFAMILY SSF52218 1 148 2.44E-35 T 31-10-2018 IPR029039 Flavoprotein-like superfamily Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 PRINTS PR00369 Flavodoxin signature 108 127 2.9E-5 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 PRINTS PR00369 Flavodoxin signature 52 63 2.9E-5 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 PRINTS PR00369 Flavodoxin signature 83 93 2.9E-5 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_1572 9427ee16fffb5b0ea4e9ad4f6d89b00f 150 PRINTS PR00369 Flavodoxin signature 4 17 2.9E-5 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 Y89_2533 e460e6cde436cecdd90441128270ce7f 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 8.7E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2533 e460e6cde436cecdd90441128270ce7f 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 8.7E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2533 e460e6cde436cecdd90441128270ce7f 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 78 9.4E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2533 e460e6cde436cecdd90441128270ce7f 207 SUPERFAMILY SSF46689 25 83 2.96E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2533 e460e6cde436cecdd90441128270ce7f 207 Gene3D G3DSA:1.10.357.10 23 196 3.9E-27 T 31-10-2018 Y89_1181 3750ce33861de3c093364b2f9dde62b0 40 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 1 37 5.5E-6 T 31-10-2018 IPR018681 Protein of unknown function DUF2165, transmembrane Y89_6320 f259adf60536b831f619a700f0c36569 416 Pfam PF00872 Transposase, Mutator family 33 391 1.5E-115 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Y89_6320 f259adf60536b831f619a700f0c36569 416 ProSitePatterns PS01007 Transposases, Mutator family, signature. 244 268 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Y89_5139 f0e481d87d18bea2667611c849fa58d9 119 Gene3D G3DSA:3.30.2310.20 1 114 1.4E-22 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Y89_5139 f0e481d87d18bea2667611c849fa58d9 119 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 108 2.5E-17 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 Pfam PF00691 OmpA family 907 946 1.9E-4 T 31-10-2018 IPR006665 OmpA-like domain Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 Gene3D G3DSA:3.30.1330.60 899 958 4.3E-5 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 476 627 5.3E-32 T 31-10-2018 IPR008023 Protein of unknown function DUF748 Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 140 291 2.4E-33 T 31-10-2018 IPR008023 Protein of unknown function DUF748 Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 Pfam PF05359 Domain of Unknown Function (DUF748) 692 837 7.0E-41 T 31-10-2018 IPR008023 Protein of unknown function DUF748 Y89_5348 6513b2745ae90a9649d0102ed2f7fe6e 1088 SUPERFAMILY SSF103088 904 945 1.7E-5 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_6135 83c41cbba3fb8e22fe8c772c14b9ca6b 176 Gene3D G3DSA:3.30.1380.20 20 175 3.3E-8 T 31-10-2018 Y89_6135 83c41cbba3fb8e22fe8c772c14b9ca6b 176 SMART SM00989 107 175 3.7E-4 T 31-10-2018 IPR004096 4-vinyl reductase, 4VR Y89_6135 83c41cbba3fb8e22fe8c772c14b9ca6b 176 SUPERFAMILY SSF111126 6 144 2.98E-17 T 31-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily Y89_0959 02c0c838dd4ebeca9a83ed96ad61abb4 172 Gene3D G3DSA:2.40.50.870 23 172 1.7E-60 T 31-10-2018 Y89_0959 02c0c838dd4ebeca9a83ed96ad61abb4 172 Pfam PF11736 Protein of unknown function (DUF3299) 30 165 3.1E-46 T 31-10-2018 IPR021727 Protein of unknown function DUF3299 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 Gene3D G3DSA:1.10.357.10 61 209 1.7E-13 T 31-10-2018 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.1E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.1E-5 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 Gene3D G3DSA:1.10.10.60 1 60 8.0E-13 T 31-10-2018 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 SUPERFAMILY SSF46689 10 78 7.48E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 SUPERFAMILY SSF48498 91 177 7.71E-6 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_1049 f5083bbdeaf805d9009e1bc4ccf080be 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 4.7E-12 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5030 f2850e297a774a721d5a3c1467ab0ff7 220 Pfam PF11508 Protein of unknown function (DUF3218) 12 219 1.8E-67 T 31-10-2018 IPR021593 Protein of unknown function DUF3218 Y89_5030 f2850e297a774a721d5a3c1467ab0ff7 220 Gene3D G3DSA:1.10.3690.10 6 220 5.1E-76 T 31-10-2018 IPR038265 PA2222-like domain superfamily Y89_5030 f2850e297a774a721d5a3c1467ab0ff7 220 SUPERFAMILY SSF53955 12 219 1.18E-71 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_0191 9d61b2673483b9b517d6fe068afb1581 121 Gene3D G3DSA:3.40.50.12740 1 121 9.2E-38 T 31-10-2018 Y89_0191 9d61b2673483b9b517d6fe068afb1581 121 Pfam PF00072 Response regulator receiver domain 5 115 1.9E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0191 9d61b2673483b9b517d6fe068afb1581 121 SUPERFAMILY SSF52172 3 120 4.27E-37 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0191 9d61b2673483b9b517d6fe068afb1581 121 SMART SM00448 3 116 1.6E-37 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2786 e7c8e52ca14be8fe482d0c7a816a9a41 439 Gene3D G3DSA:2.120.10.30 69 375 1.3E-20 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_2786 e7c8e52ca14be8fe482d0c7a816a9a41 439 SUPERFAMILY SSF50952 65 437 3.27E-33 T 31-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Y89_2786 e7c8e52ca14be8fe482d0c7a816a9a41 439 Pfam PF07995 Glucose / Sorbosone dehydrogenase 166 360 6.1E-14 T 31-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase Y89_6208 3881b5d64e5daf1383d40c15443e8fac 120 Pfam PF09498 Protein of unknown function (DUF2388) 54 117 2.1E-21 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_6208 3881b5d64e5daf1383d40c15443e8fac 120 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 51 117 9.0E-20 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_2269 ddd3605cc747ca8beb2a998526bf60f4 231 SUPERFAMILY SSF53474 2 224 2.1E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2269 ddd3605cc747ca8beb2a998526bf60f4 231 Gene3D G3DSA:3.40.50.1820 2 228 5.6E-36 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2269 ddd3605cc747ca8beb2a998526bf60f4 231 Pfam PF12697 Alpha/beta hydrolase family 7 220 9.2E-17 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_6284 0f65fe8c7a3b5827efca5691e74c80b5 674 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 16 668 2.4E-227 T 31-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Y89_6284 0f65fe8c7a3b5827efca5691e74c80b5 674 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 112 592 7.2E-88 T 31-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y89_4670 6c429695cc9a42c21864b4f5d160b720 310 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 13 275 2.5E-111 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_4670 6c429695cc9a42c21864b4f5d160b720 310 Pfam PF11920 Protein of unknown function (DUF3438) 9 284 7.5E-124 T 31-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Y89_2661 9dd8bcc7e3baf2389a4a195909667048 441 SUPERFAMILY SSF111283 1 440 1.7E-73 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Y89_2661 9dd8bcc7e3baf2389a4a195909667048 441 Pfam PF01523 Putative modulator of DNA gyrase 28 301 2.0E-28 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 Pfam PF08362 YcdC-like protein, C-terminal region 59 199 2.5E-51 T 31-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.1E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.1E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 SUPERFAMILY SSF46689 3 80 3.13E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 Gene3D G3DSA:1.10.357.10 59 200 8.9E-42 T 31-10-2018 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 Gene3D G3DSA:1.10.10.60 2 58 7.1E-18 T 31-10-2018 Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 SUPERFAMILY SSF48498 76 199 1.68E-33 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3462 07ea34bc6beeb7ee92d82a326d66cd3d 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.0E-14 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0110 d3fe0dbc3498b05ee7d83ccb3f940910 315 Pfam PF15635 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 179 276 5.1E-8 T 31-10-2018 IPR028917 Tox-GHH2 domain Y89_0110 d3fe0dbc3498b05ee7d83ccb3f940910 315 Pfam PF13665 Domain of unknown function (DUF4150) 21 133 9.1E-36 T 31-10-2018 IPR025425 Domain of unknown function DUF4150 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 SUPERFAMILY SSF55021 1 67 4.2E-14 T 31-10-2018 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 Gene3D G3DSA:3.30.70.260 1 77 2.4E-19 T 31-10-2018 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 Gene3D G3DSA:3.30.70.260 84 169 1.9E-24 T 31-10-2018 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 Pfam PF01842 ACT domain 96 125 5.3E-7 T 31-10-2018 IPR002912 ACT domain Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 PIRSF PIRSF028103 1 171 5.1E-56 T 31-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 Pfam PF13740 ACT domain 3 65 1.0E-11 T 31-10-2018 Y89_0506 60705d0f06021c9201519d2ceb20e2c2 171 SUPERFAMILY SSF55021 87 168 1.47E-17 T 31-10-2018 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 SUPERFAMILY SSF46548 492 620 1.69E-20 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Pfam PF02913 FAD linked oxidases, C-terminal domain 267 514 1.1E-62 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 SUPERFAMILY SSF56176 7 264 7.36E-58 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Pfam PF12838 4Fe-4S dicluster domain 539 608 2.6E-9 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Gene3D G3DSA:3.30.70.2740 392 475 6.7E-8 T 31-10-2018 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Pfam PF02754 Cysteine-rich domain 704 795 0.0058 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Pfam PF02754 Cysteine-rich domain 833 893 0.021 T 31-10-2018 IPR004017 Cysteine-rich domain Y89_5384 81db99b160d834f771dd816ecdd5688e 938 SUPERFAMILY SSF55103 269 521 1.16E-57 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 540 551 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Pfam PF01565 FAD binding domain 41 175 4.2E-33 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Gene3D G3DSA:3.30.465.40 7 195 9.8E-30 T 31-10-2018 Y89_5384 81db99b160d834f771dd816ecdd5688e 938 Gene3D G3DSA:1.10.1060.10 517 629 5.8E-8 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_0223 0f6435f324f87d39f8c1c80e3df3b0d6 254 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 1 254 3.9E-111 T 31-10-2018 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 Y89_0223 0f6435f324f87d39f8c1c80e3df3b0d6 254 Pfam PF03818 Malonate/sodium symporter MadM subunit 3 61 5.0E-26 T 31-10-2018 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal Y89_2427 acedc5b193f8760da0e98eb0deaa495b 297 SUPERFAMILY SSF53474 88 232 1.65E-7 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 20 256 1.0E-49 T 31-10-2018 Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 SUPERFAMILY SSF51621 8 292 2.02E-100 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 294 50.146 T 31-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 ProSitePatterns PS00161 Isocitrate lyase signature. 123 128 - T 31-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 Gene3D G3DSA:3.20.20.60 6 298 1.1E-104 T 31-10-2018 Y89_4561 38cc00a7ec4f736b2784af4e77e9e71e 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 293 8.3E-133 T 31-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Y89_6071 06344119da127168214d1efdf1c700bc 123 Pfam PF09685 Domain of unknown function (DUF4870) 17 122 4.3E-40 T 31-10-2018 IPR019109 Protein of unknown function DUF4870 Y89_3226 0d31afa8bc2388009e7f4d65fe552959 664 SUPERFAMILY SSF56300 319 566 4.8E-7 T 31-10-2018 Y89_1951 a5b50a817644912aa870406f8a064661 1620 PIRSF PIRSF036761 2 1614 0.0 T 31-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 Y89_1951 a5b50a817644912aa870406f8a064661 1620 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 77 1607 0.0 T 31-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 Y89_1951 a5b50a817644912aa870406f8a064661 1620 SUPERFAMILY SSF53223 761 962 5.18E-27 T 31-10-2018 Y89_1951 a5b50a817644912aa870406f8a064661 1620 SUPERFAMILY SSF51735 951 1245 2.82E-28 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5437 ec9fc8dfc9656eba41668a2ffcecb2ad 736 Pfam PF13550 Putative phage tail protein 213 358 2.9E-10 T 31-10-2018 IPR032876 Tip attachment protein J Y89_3559 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:1.20.58.340 275 332 2.9E-12 T 31-10-2018 Y89_3559 52470094570ee1232651e4d111f75cb0 332 Pfam PF01544 CorA-like Mg2+ transporter protein 41 328 1.9E-56 T 31-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y89_3559 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:1.20.58.340 142 271 4.2E-32 T 31-10-2018 Y89_3559 52470094570ee1232651e4d111f75cb0 332 Gene3D G3DSA:3.30.460.20 4 141 8.9E-42 T 31-10-2018 Y89_3559 52470094570ee1232651e4d111f75cb0 332 SUPERFAMILY SSF144083 267 329 5.75E-16 T 31-10-2018 Y89_3559 52470094570ee1232651e4d111f75cb0 332 SUPERFAMILY SSF143865 9 260 2.88E-49 T 31-10-2018 Y89_0068 55378a377c52077e2a16eb354c33b471 234 Pfam PF01323 DSBA-like thioredoxin domain 10 187 1.9E-6 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Y89_0068 55378a377c52077e2a16eb354c33b471 234 SUPERFAMILY SSF52833 4 209 5.74E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0068 55378a377c52077e2a16eb354c33b471 234 Gene3D G3DSA:3.40.30.10 1 213 9.3E-61 T 31-10-2018 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 Pfam PF00575 S1 RNA binding domain 38 100 6.1E-8 T 31-10-2018 IPR003029 S1 domain GO:0003676 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 Gene3D G3DSA:3.40.1260.20 398 484 4.7E-5 T 31-10-2018 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 Pfam PF10150 Ribonuclease E/G family 115 389 5.5E-106 T 31-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 422 3.4E-160 T 31-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 Gene3D G3DSA:2.40.50.140 31 118 8.7E-29 T 31-10-2018 Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 SUPERFAMILY SSF50249 39 118 1.94E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4967 191ae1f88d11e97d6dab3eff5e629468 485 SMART SM00316 37 113 3.5E-10 T 31-10-2018 IPR022967 RNA-binding domain, S1 Y89_2660 29c99ed3a19b0c41929054b0fb964db6 374 SUPERFAMILY SSF53383 42 363 1.55E-62 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2660 29c99ed3a19b0c41929054b0fb964db6 374 Gene3D G3DSA:3.40.640.10 55 272 4.9E-87 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2660 29c99ed3a19b0c41929054b0fb964db6 374 Pfam PF00155 Aminotransferase class I and II 60 358 4.8E-38 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_2660 29c99ed3a19b0c41929054b0fb964db6 374 Gene3D G3DSA:3.90.1150.10 40 354 4.9E-87 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_1072 c66535535e1005efa870161cf3f674c3 167 Pfam PF01936 NYN domain 11 159 5.0E-35 T 31-10-2018 IPR021139 NYN domain, limkain-b1-type Y89_1072 c66535535e1005efa870161cf3f674c3 167 Gene3D G3DSA:3.40.50.1010 4 165 5.7E-49 T 31-10-2018 Y89_5237 05e6d2d6b57c870476b7753c857be03d 487 PIRSF PIRSF006060 2 484 4.9E-80 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5237 05e6d2d6b57c870476b7753c857be03d 487 Pfam PF00324 Amino acid permease 20 476 4.6E-138 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_5237 05e6d2d6b57c870476b7753c857be03d 487 Gene3D G3DSA:1.20.1740.10 11 482 2.3E-61 T 31-10-2018 Y89_5237 05e6d2d6b57c870476b7753c857be03d 487 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 PIRSF PIRSF018296 1 309 2.6E-113 T 31-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 16 304 3.4E-98 T 31-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 SUPERFAMILY SSF144020 20 307 4.18E-88 T 31-10-2018 IPR024064 FdhE-like superfamily Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 306 8.1E-155 T 31-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 307 42.731 T 31-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 Y89_5421 7c300fa9f1fdddffde543cfcef78d3f6 309 Gene3D G3DSA:3.90.1670.10 19 309 2.8E-116 T 31-10-2018 IPR024064 FdhE-like superfamily Y89_0711 cb5d55893cb075560bdbd72ec526aa94 231 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 7 226 1.2E-76 T 31-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail Y89_0711 cb5d55893cb075560bdbd72ec526aa94 231 Pfam PF05100 Phage minor tail protein L 24 228 1.1E-96 T 31-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail Y89_1248 f808ccea5bca3fdc599400475431716d 346 Gene3D G3DSA:3.40.190.170 32 345 1.3E-106 T 31-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Y89_1248 f808ccea5bca3fdc599400475431716d 346 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 45 321 2.9E-81 T 31-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Y89_0120 78f9ea2bc875a632bd82888f0d7b9e7f 69 Pfam PF11137 Protein of unknown function (DUF2909) 2 60 1.4E-20 T 31-10-2018 IPR021313 Protein of unknown function DUF2909 Y89_4206 181d09fd2e44cc51cb6682e6b941bcf2 393 Gene3D G3DSA:3.40.50.1970 2 195 4.6E-46 T 31-10-2018 Y89_4206 181d09fd2e44cc51cb6682e6b941bcf2 393 Gene3D G3DSA:1.20.1090.10 197 392 4.0E-53 T 31-10-2018 Y89_4206 181d09fd2e44cc51cb6682e6b941bcf2 393 SUPERFAMILY SSF56796 5 390 4.19E-104 T 31-10-2018 Y89_4206 181d09fd2e44cc51cb6682e6b941bcf2 393 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 184 212 - T 31-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Y89_4206 181d09fd2e44cc51cb6682e6b941bcf2 393 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 379 3.4E-109 T 31-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Y89_6064 a778ab2feab3713d50bfc8919a40edb9 425 Pfam PF01168 Alanine racemase, N-terminal domain 56 294 2.2E-24 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Y89_6064 a778ab2feab3713d50bfc8919a40edb9 425 SUPERFAMILY SSF51419 57 294 1.62E-19 T 31-10-2018 IPR029066 PLP-binding barrel Y89_6064 a778ab2feab3713d50bfc8919a40edb9 425 Gene3D G3DSA:3.20.20.10 58 292 7.1E-31 T 31-10-2018 IPR029066 PLP-binding barrel Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Gene3D G3DSA:3.40.30.10 467 590 4.6E-24 T 31-10-2018 Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 588 37.585 T 31-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 SUPERFAMILY SSF74863 35 151 2.88E-38 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 SUPERFAMILY SSF52833 474 585 8.93E-19 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Gene3D G3DSA:2.60.40.1250 32 157 8.6E-42 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 180 385 1.5E-11 T 31-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Pfam PF11412 Disulphide bond corrector protein DsbC 38 150 8.1E-35 T 31-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Y89_5515 99dc18cf88484d5160aa9f2499596d8c 591 Pfam PF13899 Thioredoxin-like 479 561 4.0E-19 T 31-10-2018 Y89_2675 3e9dbfba2c68a89367d77e2b4a58b13d 162 Gene3D G3DSA:3.10.450.50 2 162 1.5E-46 T 31-10-2018 Y89_2675 3e9dbfba2c68a89367d77e2b4a58b13d 162 SUPERFAMILY SSF54427 5 161 5.24E-53 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2675 3e9dbfba2c68a89367d77e2b4a58b13d 162 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 9 162 2.2E-84 T 31-10-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0055114 Y89_2675 3e9dbfba2c68a89367d77e2b4a58b13d 162 Pfam PF00866 Ring hydroxylating beta subunit 14 154 3.2E-48 T 31-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 Y89_2833 3e07f7a4078a9fabab8089875016bf61 165 Pfam PF05638 Type VI secretion system effector, Hcp 11 138 5.3E-29 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp Y89_2833 3e07f7a4078a9fabab8089875016bf61 165 SUPERFAMILY SSF141452 10 162 4.05E-42 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_2833 3e07f7a4078a9fabab8089875016bf61 165 Gene3D G3DSA:2.30.110.20 1 164 7.2E-45 T 31-10-2018 IPR036624 Hcp1-like superfamily Y89_3513 0441252c6acfccaa254d1dc117920e11 246 Gene3D G3DSA:3.30.420.10 1 183 1.1E-56 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_3513 0441252c6acfccaa254d1dc117920e11 246 Pfam PF00929 Exonuclease 4 167 7.2E-39 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_3513 0441252c6acfccaa254d1dc117920e11 246 SMART SM00479 2 176 1.2E-49 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_3513 0441252c6acfccaa254d1dc117920e11 246 SUPERFAMILY SSF53098 1 177 2.64E-55 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_3513 0441252c6acfccaa254d1dc117920e11 246 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 178 1.4E-64 T 31-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_3513 0441252c6acfccaa254d1dc117920e11 246 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 238 1.1E-88 T 31-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Y89_4568 cf7cc224abb42244ab8be921c3eb8808 471 Gene3D G3DSA:1.20.1740.10 13 461 2.2E-67 T 31-10-2018 Y89_4568 cf7cc224abb42244ab8be921c3eb8808 471 Pfam PF00324 Amino acid permease 22 450 2.1E-117 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_4568 cf7cc224abb42244ab8be921c3eb8808 471 PIRSF PIRSF006060 1 465 9.3E-75 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4568 cf7cc224abb42244ab8be921c3eb8808 471 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 SUPERFAMILY SSF53790 1 235 4.06E-71 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 234 3.0E-93 T 31-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 Gene3D G3DSA:3.40.1010.10 1 117 4.3E-43 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 212 3.1E-48 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_3554 8a1c4510047dbf79377d3c28b00c4ce6 245 Gene3D G3DSA:3.30.950.10 118 240 4.5E-38 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_0089 9bbb4fd9bbaab83a33d309b939f134a0 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 1.5E-157 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_0089 9bbb4fd9bbaab83a33d309b939f134a0 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 3.1E-160 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 Y89_0293 98aa669de19883337fb26f460a82dda3 228 SMART SM00100 16 134 7.3E-13 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_0293 98aa669de19883337fb26f460a82dda3 228 SUPERFAMILY SSF51206 11 141 1.14E-30 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like Y89_0293 98aa669de19883337fb26f460a82dda3 228 Pfam PF00027 Cyclic nucleotide-binding domain 35 121 7.2E-20 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain Y89_0293 98aa669de19883337fb26f460a82dda3 228 Pfam PF13545 Crp-like helix-turn-helix domain 154 224 3.4E-17 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0293 98aa669de19883337fb26f460a82dda3 228 SMART SM00419 170 218 3.0E-8 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Y89_0293 98aa669de19883337fb26f460a82dda3 228 Gene3D G3DSA:1.10.10.10 156 227 5.1E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0293 98aa669de19883337fb26f460a82dda3 228 SUPERFAMILY SSF46785 152 225 1.82E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0293 98aa669de19883337fb26f460a82dda3 228 Gene3D G3DSA:2.60.120.10 8 155 1.5E-28 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 328 2.1E-25 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Gene3D G3DSA:3.40.50.1220 187 341 2.0E-40 T 31-10-2018 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 7.4E-47 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 SUPERFAMILY SSF52518 4 175 7.31E-50 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 SUPERFAMILY SSF52518 364 563 1.61E-52 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 543 5.5E-27 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Gene3D G3DSA:3.40.50.970 1 178 7.7E-58 T 31-10-2018 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 Gene3D G3DSA:3.40.50.970 345 566 7.7E-55 T 31-10-2018 Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 SUPERFAMILY SSF52467 189 356 2.45E-38 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_3173 d8d30f1664ab9c5c6631d2c592a8bba4 590 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 425 444 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Y89_1167 33c5d9aac6e9e6d4e6d80c033fc5d2c1 232 PIRSF PIRSF000851 1 232 6.5E-89 T 31-10-2018 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 Y89_1167 33c5d9aac6e9e6d4e6d80c033fc5d2c1 232 Pfam PF01066 CDP-alcohol phosphatidyltransferase 14 62 4.8E-6 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Y89_1167 33c5d9aac6e9e6d4e6d80c033fc5d2c1 232 Gene3D G3DSA:1.20.120.1760 12 179 3.4E-8 T 31-10-2018 Y89_0228 d21cd284b2154b3d9e734774b1541343 460 PIRSF PIRSF000521 19 452 4.9E-23 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0228 d21cd284b2154b3d9e734774b1541343 460 Pfam PF00202 Aminotransferase class-III 38 447 5.7E-82 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Y89_0228 d21cd284b2154b3d9e734774b1541343 460 Gene3D G3DSA:3.90.1150.10 18 450 2.1E-166 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0228 d21cd284b2154b3d9e734774b1541343 460 SUPERFAMILY SSF53383 18 447 3.52E-115 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0228 d21cd284b2154b3d9e734774b1541343 460 Gene3D G3DSA:3.40.640.10 72 346 2.1E-166 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4059 35593789bf3b60ae0c4ebf85d57364ca 279 SUPERFAMILY SSF53474 5 275 7.03E-26 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4059 35593789bf3b60ae0c4ebf85d57364ca 279 Gene3D G3DSA:3.40.50.1820 1 274 1.7E-19 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4059 35593789bf3b60ae0c4ebf85d57364ca 279 Pfam PF12697 Alpha/beta hydrolase family 37 263 9.3E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4059 35593789bf3b60ae0c4ebf85d57364ca 279 PIRSF PIRSF037442 1 279 1.4E-76 T 31-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y89_1539 fb7835dd1fd44e824e2606ea6bcc80f3 455 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_1539 fb7835dd1fd44e824e2606ea6bcc80f3 455 SUPERFAMILY SSF103473 10 452 4.05E-92 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1539 fb7835dd1fd44e824e2606ea6bcc80f3 455 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_1539 fb7835dd1fd44e824e2606ea6bcc80f3 455 Pfam PF00083 Sugar (and other) transporter 56 453 9.5E-50 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_1539 fb7835dd1fd44e824e2606ea6bcc80f3 455 Gene3D G3DSA:1.20.1250.20 17 454 5.4E-97 T 31-10-2018 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 Pfam PF00005 ABC transporter 388 541 2.1E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 Gene3D G3DSA:1.20.1560.10 16 353 3.2E-25 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 SMART SM00382 396 587 1.1E-22 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 Pfam PF00664 ABC transporter transmembrane region 51 310 1.0E-14 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 Gene3D G3DSA:3.40.50.300 361 614 6.2E-90 T 31-10-2018 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 SUPERFAMILY SSF90123 40 352 2.75E-48 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 SUPERFAMILY SSF52540 360 611 2.76E-86 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1787 c781aa5c49f5c6748b007db7c0e925b8 619 ProSitePatterns PS00211 ABC transporters family signature. 513 527 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0279 0faa141efc9f2769a9bc3205d0bfc302 98 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 32 86 1.2E-12 T 31-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Y89_5948 24493688c939210274733bc17a4d6305 251 Gene3D G3DSA:3.40.50.10090 6 243 8.1E-92 T 31-10-2018 Y89_5948 24493688c939210274733bc17a4d6305 251 Gene3D G3DSA:3.40.50.10090 35 169 8.1E-92 T 31-10-2018 Y89_5948 24493688c939210274733bc17a4d6305 251 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 244 3.6E-37 T 31-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_5948 24493688c939210274733bc17a4d6305 251 SUPERFAMILY SSF69618 3 249 5.75E-55 T 31-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Y89_1521 92defb3cb9a230d17f02824000fdc4d7 145 Gene3D G3DSA:3.40.1000.60 23 145 2.2E-83 T 31-10-2018 Y89_2442 a3270687efb81d0b45651a0b900fee97 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 19.323 T 31-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 Y89_2442 a3270687efb81d0b45651a0b900fee97 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 96 4.4E-22 T 31-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Y89_5093 08cca0e33271afedb6d2f8d6fd06d044 145 Gene3D G3DSA:2.40.50.380 108 145 6.7E-25 T 31-10-2018 Y89_5093 08cca0e33271afedb6d2f8d6fd06d044 145 Gene3D G3DSA:1.10.10.1170 24 107 1.2E-34 T 31-10-2018 Y89_5093 08cca0e33271afedb6d2f8d6fd06d044 145 Pfam PF07419 PilM 19 144 2.4E-29 T 31-10-2018 IPR009987 PilM, inner membrane Y89_0710 2fd2c568f6433c0e0f112a02b43961c4 113 Pfam PF05939 Phage minor tail protein 5 111 7.8E-32 T 31-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail Y89_3162 f052f50ed71b307599970b922e5d10c9 79 Pfam PF10976 Protein of unknown function (DUF2790) 21 77 1.2E-18 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_3162 f052f50ed71b307599970b922e5d10c9 79 Gene3D G3DSA:2.30.140.50 16 79 2.6E-15 T 31-10-2018 Y89_2598 05073825688987fb4bc4ee7629e48efe 311 Gene3D G3DSA:3.30.450.20 196 308 5.4E-9 T 31-10-2018 Y89_2598 05073825688987fb4bc4ee7629e48efe 311 Gene3D G3DSA:3.30.450.20 44 185 2.0E-5 T 31-10-2018 Y89_2598 05073825688987fb4bc4ee7629e48efe 311 Pfam PF08269 Cache domain 81 304 9.1E-9 T 31-10-2018 IPR004010 Double Cache domain 2 Y89_0033 b24b8302a83f88a1716037d65e40b784 428 SUPERFAMILY SSF109998 68 320 1.57E-5 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily Y89_0033 b24b8302a83f88a1716037d65e40b784 428 Gene3D G3DSA:3.10.50.40 291 384 4.3E-8 T 31-10-2018 Y89_0033 b24b8302a83f88a1716037d65e40b784 428 Pfam PF13145 PPIC-type PPIASE domain 271 391 2.2E-7 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Y89_0033 b24b8302a83f88a1716037d65e40b784 428 SUPERFAMILY SSF54534 292 383 6.54E-11 T 31-10-2018 Y89_0033 b24b8302a83f88a1716037d65e40b784 428 Gene3D G3DSA:1.10.4030.30 270 386 4.3E-8 T 31-10-2018 Y89_1576 0b9f95ffc6418cd121347f0d1ff6500a 228 Pfam PF04172 LrgB-like family 14 226 8.8E-70 T 31-10-2018 IPR007300 CidB/LrgB family Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 1.6E-30 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 SUPERFAMILY SSF117130 1 54 5.49E-21 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 Gene3D G3DSA:3.30.70.1680 1 60 1.2E-30 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-11 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 Pfam PF02599 Global regulator protein family 1 53 9.1E-27 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Y89_4454 fa9b8186011d8703acefd188d493bd6d 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 60 17.074 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 SMART SM00876 226 318 3.6E-48 T 31-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 TIGRFAM TIGR00433 bioB: biotin synthase 21 316 5.2E-125 T 31-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 Gene3D G3DSA:3.20.20.70 10 321 1.4E-132 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 Hamap MF_01694 Biotin synthase [bioB]. 11 319 41.875 T 31-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 SMART SM00729 49 261 3.6E-39 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 SUPERFAMILY SSF102114 11 320 1.31E-92 T 31-10-2018 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 Pfam PF04055 Radical SAM superfamily 56 207 4.2E-14 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 226 316 7.3E-21 T 31-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y89_0521 ec1b7a389a1d804e3fa7e6820070df45 352 PIRSF PIRSF001619 1 325 1.2E-136 T 31-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Y89_3989 b548c1af9a4994c1a0898efc7303d979 297 SUPERFAMILY SSF103481 185 282 1.19E-7 T 31-10-2018 Y89_3989 b548c1af9a4994c1a0898efc7303d979 297 Pfam PF00892 EamA-like transporter family 150 280 1.5E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3989 b548c1af9a4994c1a0898efc7303d979 297 SUPERFAMILY SSF103481 47 137 1.31E-6 T 31-10-2018 Y89_3306 2c0ea2fae519e7dd46bca4482cb70146 309 SUPERFAMILY SSF50956 11 304 2.75E-46 T 31-10-2018 Y89_3306 2c0ea2fae519e7dd46bca4482cb70146 309 Pfam PF06977 SdiA-regulated 51 302 8.6E-96 T 31-10-2018 IPR009722 SdiA-regulated Y89_0028 5385aa3ffa196a7f316a6852f6814a19 185 Pfam PF01300 Telomere recombination 13 184 4.8E-43 T 31-10-2018 IPR006070 YrdC-like domain GO:0003725 Y89_0028 5385aa3ffa196a7f316a6852f6814a19 185 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 4 183 38.39 T 31-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 Y89_0028 5385aa3ffa196a7f316a6852f6814a19 185 SUPERFAMILY SSF55821 7 184 1.46E-52 T 31-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Y89_0028 5385aa3ffa196a7f316a6852f6814a19 185 Gene3D G3DSA:3.90.870.10 3 183 4.7E-55 T 31-10-2018 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF51182 13 179 7.97E-7 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 Gene3D G3DSA:1.10.10.60 151 206 2.1E-14 T 31-10-2018 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 Gene3D G3DSA:1.10.10.60 207 250 1.8E-12 T 31-10-2018 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 Pfam PF12833 Helix-turn-helix domain 171 249 6.4E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 SMART SM00342 165 248 1.4E-30 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF46689 151 199 1.12E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4578 ae152afab6898fbf9baddc8946df84f1 250 SUPERFAMILY SSF46689 201 249 1.52E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 Gene3D G3DSA:1.20.200.10 118 447 1.4E-156 T 31-10-2018 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 5.9E-132 T 31-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 Pfam PF00206 Lyase 14 313 5.7E-66 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 2.0E-50 T 31-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.2E-18 T 31-10-2018 IPR000362 Fumarate lyase family Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 1.2E-18 T 31-10-2018 IPR000362 Fumarate lyase family Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 1.2E-18 T 31-10-2018 IPR000362 Fumarate lyase family Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.2E-18 T 31-10-2018 IPR000362 Fumarate lyase family Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 SUPERFAMILY SSF48557 10 455 3.3E-105 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 Gene3D G3DSA:1.10.40.30 383 446 1.4E-156 T 31-10-2018 Y89_2459 c18cff1e75c79995c4df83ef364ab678 456 Gene3D G3DSA:1.10.275.10 1 117 2.7E-48 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal Y89_3104 6d629ce4b25c4daf1de4a3888c38cfc4 156 Pfam PF01814 Hemerythrin HHE cation binding domain 3 124 1.6E-17 T 31-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Y89_3104 6d629ce4b25c4daf1de4a3888c38cfc4 156 Gene3D G3DSA:1.20.120.520 1 146 7.7E-18 T 31-10-2018 Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.9E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 Gene3D G3DSA:1.10.10.10 3 86 3.3E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 SUPERFAMILY SSF53850 89 297 5.25E-47 T 31-10-2018 Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 Pfam PF03466 LysR substrate binding domain 89 293 9.0E-45 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 SUPERFAMILY SSF46785 4 83 1.54E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2657 d1eb79dc6956a09a3e0e729b5e6c5304 303 Gene3D G3DSA:3.40.190.290 92 294 1.5E-65 T 31-10-2018 Y89_1010 c434737feb84011174d91d63bf366afa 136 Pfam PF03788 LrgA family 29 122 1.7E-20 T 31-10-2018 IPR005538 LrgA/CidA family GO:0016021 Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 SUPERFAMILY SSF51182 11 284 8.19E-84 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 PIRSF PIRSF006232 4 286 2.3E-92 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 Gene3D G3DSA:2.60.120.10 17 279 4.5E-82 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 Pfam PF05726 Pirin C-terminal cupin domain 182 283 7.6E-30 T 31-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 Pfam PF02678 Pirin 21 127 2.6E-34 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Y89_2782 942d207aa98cff337bbaffdf4526d4f6 286 Gene3D G3DSA:2.60.120.10 149 252 4.5E-82 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0771 d099d5dc95938583016e3358d4355599 179 PIRSF PIRSF002161 1 179 4.0E-64 T 31-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0771 d099d5dc95938583016e3358d4355599 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.121 T 31-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_0771 d099d5dc95938583016e3358d4355599 179 Pfam PF00281 Ribosomal protein L5 24 80 7.7E-29 T 31-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0771 d099d5dc95938583016e3358d4355599 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 31-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0771 d099d5dc95938583016e3358d4355599 179 Gene3D G3DSA:3.30.1440.10 1 179 1.2E-77 T 31-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0771 d099d5dc95938583016e3358d4355599 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.2E-39 T 31-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0771 d099d5dc95938583016e3358d4355599 179 SUPERFAMILY SSF55282 3 179 1.22E-77 T 31-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Y89_0267 2a515659b519f2e442d0aaad9116473c 528 Pfam PF11394 Protein of unknown function (DUF2875) 300 465 4.7E-30 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 Y89_0267 2a515659b519f2e442d0aaad9116473c 528 Pfam PF11394 Protein of unknown function (DUF2875) 67 288 2.3E-10 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 Y89_0761 b8e51c0942d9744f3541a24c81218d3c 99 Pfam PF00276 Ribosomal protein L23 8 94 9.3E-31 T 31-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Y89_0761 b8e51c0942d9744f3541a24c81218d3c 99 Gene3D G3DSA:3.30.70.330 1 99 2.2E-34 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Y89_0761 b8e51c0942d9744f3541a24c81218d3c 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.008 T 31-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Y89_0761 b8e51c0942d9744f3541a24c81218d3c 99 SUPERFAMILY SSF54189 1 91 1.62E-29 T 31-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Y89_3714 7921c8f7d345f436a6a368bd55ebedc3 270 Gene3D G3DSA:3.40.50.1820 2 263 8.2E-45 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3714 7921c8f7d345f436a6a368bd55ebedc3 270 SUPERFAMILY SSF53474 5 258 5.77E-31 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3714 7921c8f7d345f436a6a368bd55ebedc3 270 Pfam PF12697 Alpha/beta hydrolase family 5 252 1.5E-12 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.2E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.2E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 2.2E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.2E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.2E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.2E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.2E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.2E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 Gene3D G3DSA:3.40.50.720 2 258 4.4E-54 T 31-10-2018 Y89_4020 c12592277fe1f133fd11a196618e7b68 259 Pfam PF00106 short chain dehydrogenase 4 188 2.5E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_4020 c12592277fe1f133fd11a196618e7b68 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 178 0.0053 T 31-10-2018 Y89_4020 c12592277fe1f133fd11a196618e7b68 259 SUPERFAMILY SSF51735 2 232 1.99E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4020 c12592277fe1f133fd11a196618e7b68 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_1803 ed0f41333c8b2430b8dcc2e045d26047 264 SMART SM00382 34 223 3.5E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_1803 ed0f41333c8b2430b8dcc2e045d26047 264 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_1803 ed0f41333c8b2430b8dcc2e045d26047 264 Gene3D G3DSA:3.40.50.300 7 261 2.4E-64 T 31-10-2018 Y89_1803 ed0f41333c8b2430b8dcc2e045d26047 264 SUPERFAMILY SSF52540 9 236 4.33E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1803 ed0f41333c8b2430b8dcc2e045d26047 264 Pfam PF00005 ABC transporter 27 175 1.3E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_2116 c661705e5caa217c960bc4235e54edea 456 SUPERFAMILY SSF56014 103 257 1.1E-20 T 31-10-2018 Y89_2116 c661705e5caa217c960bc4235e54edea 456 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 32 88 1.2E-10 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_2116 c661705e5caa217c960bc4235e54edea 456 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 272 330 1.0E-14 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_2116 c661705e5caa217c960bc4235e54edea 456 SUPERFAMILY SSF56014 351 446 1.57E-11 T 31-10-2018 Y89_2116 c661705e5caa217c960bc4235e54edea 456 Gene3D G3DSA:3.30.413.10 101 257 6.2E-63 T 31-10-2018 Y89_2116 c661705e5caa217c960bc4235e54edea 456 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 102 244 2.5E-14 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_2116 c661705e5caa217c960bc4235e54edea 456 SUPERFAMILY SSF55124 9 93 3.27E-16 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_2116 c661705e5caa217c960bc4235e54edea 456 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 15 412 1.4E-111 T 31-10-2018 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like Y89_2116 c661705e5caa217c960bc4235e54edea 456 Gene3D G3DSA:3.30.413.10 348 449 2.3E-9 T 31-10-2018 Y89_2116 c661705e5caa217c960bc4235e54edea 456 Gene3D G3DSA:3.90.480.10 33 330 6.2E-63 T 31-10-2018 Y89_2116 c661705e5caa217c960bc4235e54edea 456 SUPERFAMILY SSF55124 215 342 4.09E-24 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Y89_2745 54c6950a737ab91b3d5dcd382349b3ad 283 Pfam PF13649 Methyltransferase domain 55 151 4.2E-11 T 31-10-2018 Y89_2745 54c6950a737ab91b3d5dcd382349b3ad 283 SUPERFAMILY SSF53335 31 248 5.89E-31 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2745 54c6950a737ab91b3d5dcd382349b3ad 283 Gene3D G3DSA:3.40.50.150 37 247 4.4E-31 T 31-10-2018 Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 252 2.4E-66 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 251 1.3E-94 T 31-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 Gene3D G3DSA:3.40.190.10 27 250 2.0E-80 T 31-10-2018 Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 Gene3D G3DSA:3.40.190.10 111 211 2.0E-80 T 31-10-2018 Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 SMART SM00062 25 254 2.1E-81 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_4471 83a71b07e1fbdcbed0f7e382b1b06eee 259 SUPERFAMILY SSF53850 1 255 3.03E-70 T 31-10-2018 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 SUPERFAMILY SSF48179 190 288 5.61E-22 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 SUPERFAMILY SSF51735 7 188 2.44E-53 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 Gene3D G3DSA:3.40.50.720 1 189 6.8E-67 T 31-10-2018 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 SUPERFAMILY SSF48179 312 404 2.21E-21 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 Gene3D G3DSA:1.10.1040.50 192 410 1.3E-70 T 31-10-2018 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 317 401 7.0E-7 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 281 6.0E-23 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_5875 f5274960e6307a760b5264e52cfb3e2e 411 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 187 7.9E-60 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Y89_4025 fd7f9e16cdcd73aac3e4027cf4575089 135 SUPERFAMILY SSF54427 5 122 1.15E-27 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_4025 fd7f9e16cdcd73aac3e4027cf4575089 135 Pfam PF13474 SnoaL-like domain 14 113 9.2E-10 T 31-10-2018 IPR037401 SnoaL-like domain Y89_4025 fd7f9e16cdcd73aac3e4027cf4575089 135 Gene3D G3DSA:3.10.450.50 2 133 5.7E-35 T 31-10-2018 Y89_4025 fd7f9e16cdcd73aac3e4027cf4575089 135 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 4 116 1.0E-9 T 31-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 Y89_2380 681349de063983e1eecc940cab0d2ceb 281 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 173 1.1E-13 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_2380 681349de063983e1eecc940cab0d2ceb 281 SMART SM00382 25 183 7.3E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_2380 681349de063983e1eecc940cab0d2ceb 281 SUPERFAMILY SSF52540 8 249 1.51E-37 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2380 681349de063983e1eecc940cab0d2ceb 281 Gene3D G3DSA:3.40.50.300 2 207 2.5E-30 T 31-10-2018 Y89_1361 3267ffe15684153ed4a2121d57f22ecb 207 PIRSF PIRSF006324 1 205 1.9E-49 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_1361 3267ffe15684153ed4a2121d57f22ecb 207 Pfam PF01810 LysE type translocator 14 203 1.7E-26 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_0507 55c1d33ebcfbf7fbe19738fcaba4d231 298 SUPERFAMILY SSF103481 213 286 2.62E-7 T 31-10-2018 Y89_0507 55c1d33ebcfbf7fbe19738fcaba4d231 298 Pfam PF00892 EamA-like transporter family 8 141 3.3E-16 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_0507 55c1d33ebcfbf7fbe19738fcaba4d231 298 TIGRFAM TIGR00688 rarD: protein RarD 8 260 1.9E-74 T 31-10-2018 IPR004626 RarD protein GO:0005887 Y89_0507 55c1d33ebcfbf7fbe19738fcaba4d231 298 SUPERFAMILY SSF103481 47 145 4.05E-14 T 31-10-2018 Y89_2578 d0bef4849556b03b3a42f4e8dcc92f72 132 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 16 50 2.3E-8 T 31-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Y89_2578 d0bef4849556b03b3a42f4e8dcc92f72 132 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 55 117 9.5E-19 T 31-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Y89_2578 d0bef4849556b03b3a42f4e8dcc92f72 132 SUPERFAMILY SSF50249 4 124 3.26E-33 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_4365 831d25d376678bbb084e67bc1c89760e 203 SUPERFAMILY SSF49401 27 203 7.95E-21 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_4365 831d25d376678bbb084e67bc1c89760e 203 Pfam PF00419 Fimbrial protein 28 202 8.6E-13 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_4365 831d25d376678bbb084e67bc1c89760e 203 Gene3D G3DSA:2.60.40.1090 27 202 3.1E-24 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_2844 8db77aa4e694f643646eefe8d9c864e7 381 SUPERFAMILY SSF51679 1 349 4.84E-103 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2844 8db77aa4e694f643646eefe8d9c864e7 381 Gene3D G3DSA:3.20.20.30 1 354 1.1E-151 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2844 8db77aa4e694f643646eefe8d9c864e7 381 Pfam PF00296 Luciferase-like monooxygenase 1 324 1.2E-93 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_2844 8db77aa4e694f643646eefe8d9c864e7 381 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 379 79.733 T 31-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y89_2844 8db77aa4e694f643646eefe8d9c864e7 381 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 2.3E-193 T 31-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 Y89_1180 7f4e7ea3f17e4f070d3cfb624a1b47d2 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 2.6E-20 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_1180 7f4e7ea3f17e4f070d3cfb624a1b47d2 203 Gene3D G3DSA:1.20.1050.10 80 202 9.5E-33 T 31-10-2018 Y89_1180 7f4e7ea3f17e4f070d3cfb624a1b47d2 203 Gene3D G3DSA:3.40.30.10 1 79 4.5E-19 T 31-10-2018 Y89_1180 7f4e7ea3f17e4f070d3cfb624a1b47d2 203 SUPERFAMILY SSF47616 69 200 7.48E-8 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_1180 7f4e7ea3f17e4f070d3cfb624a1b47d2 203 SUPERFAMILY SSF52833 1 95 3.53E-17 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4242 5890e94d621753e94052f0aec8288610 382 SUPERFAMILY SSF50952 37 379 3.66E-45 T 31-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Y89_4242 5890e94d621753e94052f0aec8288610 382 Gene3D G3DSA:2.120.10.30 31 379 3.5E-132 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_4242 5890e94d621753e94052f0aec8288610 382 Pfam PF07995 Glucose / Sorbosone dehydrogenase 46 377 1.1E-137 T 31-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase Y89_5676 f60d184f1f8d564a7c7877b621eda059 378 SUPERFAMILY SSF53756 8 365 3.4E-62 T 31-10-2018 Y89_5676 f60d184f1f8d564a7c7877b621eda059 378 Pfam PF00534 Glycosyl transferases group 1 185 335 5.1E-29 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 Y89_5676 f60d184f1f8d564a7c7877b621eda059 378 Pfam PF13439 Glycosyltransferase Family 4 41 172 3.9E-9 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Y89_5676 f60d184f1f8d564a7c7877b621eda059 378 Gene3D G3DSA:3.40.50.2000 42 358 7.7E-54 T 31-10-2018 Y89_5676 f60d184f1f8d564a7c7877b621eda059 378 Gene3D G3DSA:3.40.50.2000 170 354 7.7E-54 T 31-10-2018 Y89_4773 99b2d531de931bce9fd955a62c6f6c81 401 Pfam PF02417 Chromate transporter 228 394 1.3E-40 T 31-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Y89_4773 99b2d531de931bce9fd955a62c6f6c81 401 Pfam PF02417 Chromate transporter 13 177 3.9E-34 T 31-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Y89_4773 99b2d531de931bce9fd955a62c6f6c81 401 TIGRFAM TIGR00937 2A51: chromate efflux transporter 18 394 1.9E-103 T 31-10-2018 IPR014047 Chromate transporter, long chain Y89_4773 99b2d531de931bce9fd955a62c6f6c81 401 PIRSF PIRSF004810 2 400 1.4E-129 T 31-10-2018 IPR014047 Chromate transporter, long chain Y89_5700 7ae430ed7126c0d978fe492a1f070331 255 SUPERFAMILY SSF52540 1 254 2.15E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5700 7ae430ed7126c0d978fe492a1f070331 255 Pfam PF13614 AAA domain 5 183 2.1E-37 T 31-10-2018 IPR025669 AAA domain Y89_5700 7ae430ed7126c0d978fe492a1f070331 255 Gene3D G3DSA:3.40.50.300 3 254 2.4E-59 T 31-10-2018 Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 Gene3D G3DSA:1.10.10.10 3 87 5.9E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 SUPERFAMILY SSF53850 91 296 1.04E-42 T 31-10-2018 Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 SUPERFAMILY SSF46785 4 85 2.1E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 Gene3D G3DSA:3.40.190.10 92 290 1.0E-59 T 31-10-2018 Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 Pfam PF03466 LysR substrate binding domain 90 293 7.5E-44 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 Gene3D G3DSA:3.40.190.10 164 264 1.0E-59 T 31-10-2018 Y89_0172 0f7bb3c13c817278e0d12c3cf2923046 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.5E-18 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3865 8b3ed37caf3884421b495fd1c170b6f5 526 Pfam PF02120 Flagellar hook-length control protein FliK 432 512 4.8E-19 T 31-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 Gene3D G3DSA:1.10.10.10 7 149 4.0E-37 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 Pfam PF01047 MarR family 42 100 1.5E-15 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 3.0E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 3.0E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 3.0E-6 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 SMART SM00347 35 133 1.2E-22 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Y89_2172 88ea5b16c74d41b6e4035955aade0bbf 151 SUPERFAMILY SSF46785 8 148 2.61E-35 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3687 f96431b4b17a3d688393e66dc4fd0140 573 TIGRFAM TIGR00815 sulP: sulfate permease 8 547 3.3E-126 T 31-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Y89_3687 f96431b4b17a3d688393e66dc4fd0140 573 Pfam PF01740 STAS domain 439 546 4.8E-18 T 31-10-2018 IPR002645 STAS domain Y89_3687 f96431b4b17a3d688393e66dc4fd0140 573 Gene3D G3DSA:3.30.750.24 435 555 8.8E-27 T 31-10-2018 IPR036513 STAS domain superfamily Y89_3687 f96431b4b17a3d688393e66dc4fd0140 573 SUPERFAMILY SSF52091 441 552 1.29E-15 T 31-10-2018 IPR036513 STAS domain superfamily Y89_3687 f96431b4b17a3d688393e66dc4fd0140 573 Pfam PF00916 Sulfate permease family 21 388 5.2E-93 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y89_5906 f956bd46032887d772b95062d8e38f1e 397 SUPERFAMILY SSF103473 8 379 6.67E-45 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5906 f956bd46032887d772b95062d8e38f1e 397 Pfam PF07690 Major Facilitator Superfamily 12 346 1.6E-35 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5906 f956bd46032887d772b95062d8e38f1e 397 Gene3D G3DSA:1.20.1250.20 8 384 3.1E-36 T 31-10-2018 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 SUPERFAMILY SSF53671 4 334 6.94E-100 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 333 3.6E-134 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 Gene3D G3DSA:3.40.50.1370 5 330 3.7E-139 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 Gene3D G3DSA:3.40.50.1370 151 320 3.7E-139 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 334 81.239 T 31-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.2E-25 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.2E-25 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 3.2E-25 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 298 321 3.2E-25 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.3E-45 T 31-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 331 4.2E-54 T 31-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.0E-30 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.0E-30 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.0E-30 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.0E-30 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_5858 eda62eebef81a4cefa04693adb67a9c9 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 312 323 1.0E-30 T 31-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Y89_3487 8bd95490b45fed6fa7901efd8a4a1aee 100 SUPERFAMILY SSF141099 1 96 9.68E-38 T 31-10-2018 IPR036488 Atu1913-like superfamily Y89_3487 8bd95490b45fed6fa7901efd8a4a1aee 100 Gene3D G3DSA:4.10.1210.10 1 91 4.0E-19 T 31-10-2018 IPR036488 Atu1913-like superfamily Y89_3487 8bd95490b45fed6fa7901efd8a4a1aee 100 Pfam PF08980 Domain of unknown function (DUF1883) 1 75 1.5E-32 T 31-10-2018 IPR015073 Domain of unknown function DUF1883 Y89_6116 358067f3f868811729db1db013ed01f4 312 Gene3D G3DSA:3.40.190.100 111 220 9.4E-100 T 31-10-2018 Y89_6116 358067f3f868811729db1db013ed01f4 312 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 281 1.1E-63 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Y89_6116 358067f3f868811729db1db013ed01f4 312 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 21 307 2.3E-149 T 31-10-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 Y89_6116 358067f3f868811729db1db013ed01f4 312 SUPERFAMILY SSF53850 21 298 3.53E-92 T 31-10-2018 Y89_6116 358067f3f868811729db1db013ed01f4 312 Gene3D G3DSA:3.40.190.10 30 291 9.4E-100 T 31-10-2018 Y89_4521 3b7ab75670e3680419082cb315acf610 196 Gene3D G3DSA:1.10.357.10 2 196 8.7E-51 T 31-10-2018 Y89_4521 3b7ab75670e3680419082cb315acf610 196 SUPERFAMILY SSF46689 3 75 1.28E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4521 3b7ab75670e3680419082cb315acf610 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 7.9E-14 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4521 3b7ab75670e3680419082cb315acf610 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.7E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4521 3b7ab75670e3680419082cb315acf610 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.7E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_4521 3b7ab75670e3680419082cb315acf610 196 SUPERFAMILY SSF48498 80 191 4.45E-21 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_4521 3b7ab75670e3680419082cb315acf610 196 Pfam PF16925 Bacterial transcriptional repressor C-terminal 80 189 4.2E-18 T 31-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 12 361 27.631 T 31-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 PIRSF PIRSF026782 9 366 5.4E-123 T 31-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 19 322 1.7E-57 T 31-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 SUPERFAMILY SSF111342 6 288 3.92E-83 T 31-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 Gene3D G3DSA:3.30.2110.10 14 186 5.2E-48 T 31-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_2114 5363e5c6265279cc46b14d85c36e92ef 366 Pfam PF01888 CbiD 12 271 3.3E-89 T 31-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 Y89_3378 564d6b0a4e8b02498250118ef5ee7cc9 319 Gene3D G3DSA:3.40.50.2300 42 295 3.1E-92 T 31-10-2018 Y89_3378 564d6b0a4e8b02498250118ef5ee7cc9 319 Pfam PF13407 Periplasmic binding protein domain 37 299 2.7E-56 T 31-10-2018 IPR025997 Periplasmic binding protein Y89_3378 564d6b0a4e8b02498250118ef5ee7cc9 319 SUPERFAMILY SSF53822 24 318 2.2E-77 T 31-10-2018 IPR028082 Periplasmic binding protein-like I Y89_3378 564d6b0a4e8b02498250118ef5ee7cc9 319 Gene3D G3DSA:3.40.50.2300 145 281 3.1E-92 T 31-10-2018 Y89_3870 32b94fb038cb99165a178560346dfb9f 240 SUPERFAMILY SSF64438 26 224 3.11E-47 T 31-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Y89_3870 32b94fb038cb99165a178560346dfb9f 240 Gene3D G3DSA:3.60.140.10 4 239 9.2E-52 T 31-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Y89_3870 32b94fb038cb99165a178560346dfb9f 240 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 17 226 6.6E-46 T 31-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Y89_3405 e19254abe2c9a32976220e9ec8106a7c 115 Pfam PF05899 Protein of unknown function (DUF861) 41 111 1.6E-26 T 31-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_3405 e19254abe2c9a32976220e9ec8106a7c 115 SUPERFAMILY SSF51182 29 113 8.19E-16 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3405 e19254abe2c9a32976220e9ec8106a7c 115 Gene3D G3DSA:2.60.120.10 4 115 3.8E-26 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 Gene3D G3DSA:3.40.50.720 1 265 4.5E-65 T 31-10-2018 Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 255 1.6E-83 T 31-10-2018 Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PIRSF PIRSF000094 1 263 1.4E-109 T 31-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3523 f7666ac805e1eceeafbb1cc1791bedc5 265 SUPERFAMILY SSF51735 6 255 1.36E-61 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0732 c6417d327810ac6108989565d3c1098a 358 SUPERFAMILY SSF54523 290 323 2.83E-5 T 31-10-2018 Y89_0732 c6417d327810ac6108989565d3c1098a 358 Gene3D G3DSA:3.30.700.10 287 358 6.4E-6 T 31-10-2018 Y89_0732 c6417d327810ac6108989565d3c1098a 358 Pfam PF05656 Protein of unknown function (DUF805) 175 277 4.7E-21 T 31-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 Y89_4700 7c6848dd468e3076d1240469378ff1ec 217 SUPERFAMILY SSF48592 100 196 3.79E-22 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4700 7c6848dd468e3076d1240469378ff1ec 217 Pfam PF00118 TCP-1/cpn60 chaperonin family 103 194 2.0E-18 T 31-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Y89_4700 7c6848dd468e3076d1240469378ff1ec 217 Gene3D G3DSA:1.10.560.10 99 202 3.0E-16 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily Y89_4700 7c6848dd468e3076d1240469378ff1ec 217 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 17 98 6.1E-24 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Y89_4700 7c6848dd468e3076d1240469378ff1ec 217 Gene3D G3DSA:1.10.150.130 13 98 3.6E-31 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5724 3974c7774f7d6094cb9f4a803c30daf9 231 SUPERFAMILY SSF110997 152 225 3.14E-17 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_5724 3974c7774f7d6094cb9f4a803c30daf9 231 Gene3D G3DSA:3.30.70.1070 148 228 1.4E-18 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Y89_5724 3974c7774f7d6094cb9f4a803c30daf9 231 Pfam PF05036 Sporulation related domain 152 222 3.3E-16 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 Y89_2996 97c430997aeda67d2055a6b571710c00 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 4.7E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2996 97c430997aeda67d2055a6b571710c00 312 Pfam PF03466 LysR substrate binding domain 97 301 3.2E-50 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2996 97c430997aeda67d2055a6b571710c00 312 SUPERFAMILY SSF53850 98 305 1.14E-47 T 31-10-2018 Y89_2996 97c430997aeda67d2055a6b571710c00 312 Gene3D G3DSA:3.40.190.290 100 300 1.5E-60 T 31-10-2018 Y89_2996 97c430997aeda67d2055a6b571710c00 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.0E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2996 97c430997aeda67d2055a6b571710c00 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.0E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2996 97c430997aeda67d2055a6b571710c00 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.0E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2996 97c430997aeda67d2055a6b571710c00 312 Gene3D G3DSA:1.10.10.10 10 94 2.0E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2996 97c430997aeda67d2055a6b571710c00 312 SUPERFAMILY SSF46785 11 97 4.96E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0931 8c3eda229ff97ac39fb8224e64ff259f 138 Pfam PF03061 Thioesterase superfamily 45 121 8.7E-13 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_0931 8c3eda229ff97ac39fb8224e64ff259f 138 Gene3D G3DSA:3.10.129.10 4 136 1.2E-50 T 31-10-2018 Y89_0931 8c3eda229ff97ac39fb8224e64ff259f 138 SUPERFAMILY SSF54637 7 132 6.08E-22 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_6129 efcc43d337b703620e18ad65dae82ca8 224 Pfam PF06267 Family of unknown function (DUF1028) 2 191 8.8E-69 T 31-10-2018 IPR010430 Protein of unknown function DUF1028 Y89_6129 efcc43d337b703620e18ad65dae82ca8 224 SUPERFAMILY SSF56235 1 224 4.24E-80 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_6129 efcc43d337b703620e18ad65dae82ca8 224 Gene3D G3DSA:3.60.20.10 1 213 5.7E-71 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 117 1.5E-25 T 31-10-2018 IPR031982 Type IV minor pilin ComP Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 SUPERFAMILY SSF54523 8 126 5.76E-23 T 31-10-2018 Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 27 3.7E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 Gene3D G3DSA:3.30.700.10 8 140 2.5E-24 T 31-10-2018 Y89_5163 f824c43af10d92bff21fa0a0d160271b 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 6.0E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2060 8f8a4d1fd04e7227af180edbfabf906b 118 Pfam PF07238 PilZ domain 17 106 2.4E-13 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_2060 8f8a4d1fd04e7227af180edbfabf906b 118 Gene3D G3DSA:2.40.10.220 6 118 2.3E-48 T 31-10-2018 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:3.40.190.10 90 293 4.8E-58 T 31-10-2018 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 SUPERFAMILY SSF46785 4 84 1.57E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.5E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:3.40.190.10 171 268 4.8E-58 T 31-10-2018 Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Gene3D G3DSA:1.10.10.10 1 88 1.7E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 Pfam PF03466 LysR substrate binding domain 94 296 3.7E-28 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_5876 0c4c62c1ffc1a0fb1b0c71b63eff8282 302 SUPERFAMILY SSF53850 90 296 2.33E-39 T 31-10-2018 Y89_1441 66dc5873f22b739835c39ae55e7bb023 109 Pfam PF06942 GlpM protein 2 108 1.1E-49 T 31-10-2018 IPR009707 Membrane protein GlpM/YdgC Y89_1441 66dc5873f22b739835c39ae55e7bb023 109 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 18 84 6.0E-27 T 31-10-2018 IPR009707 Membrane protein GlpM/YdgC Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 312 340 - T 31-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 SMART SM00062 44 269 1.1E-30 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 268 5.6E-27 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 SUPERFAMILY SSF53850 45 268 1.59E-37 T 31-10-2018 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 6 489 45.366 T 31-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Gene3D G3DSA:3.40.190.10 38 264 1.3E-89 T 31-10-2018 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Pfam PF01464 Transglycosylase SLT domain 295 402 5.4E-20 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Gene3D G3DSA:1.10.530.10 287 468 1.5E-32 T 31-10-2018 Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 SUPERFAMILY SSF53955 246 453 9.68E-33 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_1263 d6cf5e89f5780c1e6a8f985c9e5f80ee 490 Gene3D G3DSA:3.40.190.10 130 225 1.3E-89 T 31-10-2018 Y89_5768 fe3f875d090b4cb058587c25daa3d26c 467 Gene3D G3DSA:1.20.1740.10 7 458 1.6E-65 T 31-10-2018 Y89_5768 fe3f875d090b4cb058587c25daa3d26c 467 PIRSF PIRSF006060 1 459 6.4E-70 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5768 fe3f875d090b4cb058587c25daa3d26c 467 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_5768 fe3f875d090b4cb058587c25daa3d26c 467 Pfam PF00324 Amino acid permease 15 446 3.9E-102 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_4599 90986d4614f56772e2d5f16fa8cd3363 84 SUPERFAMILY SSF109910 3 79 1.83E-24 T 31-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Y89_4599 90986d4614f56772e2d5f16fa8cd3363 84 Pfam PF03937 Flavinator of succinate dehydrogenase 8 77 8.3E-25 T 31-10-2018 IPR005631 Flavinator of succinate dehydrogenase Y89_4599 90986d4614f56772e2d5f16fa8cd3363 84 Gene3D G3DSA:1.10.150.250 1 83 3.7E-30 T 31-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 Gene3D G3DSA:3.40.50.11270 12 96 2.8E-112 T 31-10-2018 Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.006 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 Pfam PF02401 LytB protein 3 283 1.5E-92 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 5.2E-100 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 Gene3D G3DSA:3.40.1010.20 97 197 2.8E-112 T 31-10-2018 Y89_5164 d5d04df6c8387db7f9cd224dcbc8dd24 314 Gene3D G3DSA:3.40.1010.20 6 282 2.8E-112 T 31-10-2018 Y89_1582 064c73e8df719c77f4a3bf1db3af6581 114 Pfam PF05899 Protein of unknown function (DUF861) 37 109 6.9E-29 T 31-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Y89_1582 064c73e8df719c77f4a3bf1db3af6581 114 SUPERFAMILY SSF51182 19 112 6.53E-17 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_1582 064c73e8df719c77f4a3bf1db3af6581 114 Gene3D G3DSA:2.60.120.10 2 114 1.5E-27 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5024 008e870e4601d221212bd8142c1f86db 168 SUPERFAMILY SSF55729 43 161 1.49E-20 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5024 008e870e4601d221212bd8142c1f86db 168 Pfam PF00583 Acetyltransferase (GNAT) family 43 156 4.5E-10 T 31-10-2018 IPR000182 GNAT domain Y89_5024 008e870e4601d221212bd8142c1f86db 168 Gene3D G3DSA:3.40.630.30 9 166 5.8E-16 T 31-10-2018 Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 SUPERFAMILY SSF117143 80 423 6.54E-76 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 Pfam PF00460 Flagella basal body rod protein 3 33 2.7E-7 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 444 3.6E-97 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 383 461 8.3E-19 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 Gene3D G3DSA:2.60.98.20 150 286 3.3E-26 T 31-10-2018 IPR037058 Flagellar hook protein FlgE superfamily Y89_4274 5c5f63b1f2dd0daf33dc1a2f195d0881 462 Pfam PF07559 Flagellar basal body protein FlaE 176 343 2.9E-27 T 31-10-2018 IPR011491 Flagellar hook protein FlgE Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 Gene3D G3DSA:2.40.30.20 1 89 3.1E-26 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 SUPERFAMILY SSF63380 93 194 7.4E-32 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 Pfam PF00677 Lumazine binding domain 3 87 3.3E-20 T 31-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 Pfam PF00677 Lumazine binding domain 100 184 2.5E-24 T 31-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 198 2.6E-65 T 31-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 SUPERFAMILY SSF63380 1 88 4.0E-25 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 Gene3D G3DSA:2.40.30.20 102 202 1.0E-35 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Y89_0969 3c4c0239ad845e416fe3beeaedd18205 219 PIRSF PIRSF000498 1 212 9.1E-77 T 31-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Y89_2404 84f7d41e6f5c5a83daf4f10c707d6fb9 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 306 2.9E-82 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_2404 84f7d41e6f5c5a83daf4f10c707d6fb9 320 Gene3D G3DSA:3.40.50.1100 16 310 1.1E-121 T 31-10-2018 Y89_2404 84f7d41e6f5c5a83daf4f10c707d6fb9 320 SUPERFAMILY SSF53686 6 313 1.06E-97 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_2404 84f7d41e6f5c5a83daf4f10c707d6fb9 320 Gene3D G3DSA:3.40.50.1100 53 149 1.1E-121 T 31-10-2018 Y89_1065 82e8ac94d08cff89538d28f3bc14f78a 379 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 76 357 6.5E-11 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Y89_1065 82e8ac94d08cff89538d28f3bc14f78a 379 SUPERFAMILY SSF56219 73 375 1.3E-27 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_1065 82e8ac94d08cff89538d28f3bc14f78a 379 Gene3D G3DSA:3.60.10.10 71 379 1.7E-41 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Y89_1121 d25e4618f67c4c4ec5510c654766e7a7 153 Gene3D G3DSA:3.40.1420.10 24 153 4.4E-52 T 31-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily Y89_1121 d25e4618f67c4c4ec5510c654766e7a7 153 PIRSF PIRSF009103 1 153 1.1E-62 T 31-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 Y89_1121 d25e4618f67c4c4ec5510c654766e7a7 153 SUPERFAMILY SSF89872 25 153 2.49E-51 T 31-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily Y89_1121 d25e4618f67c4c4ec5510c654766e7a7 153 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 36 151 1.9E-42 T 31-10-2018 Y89_0129 2692738787bbf84bd93535310e8355b6 195 Gene3D G3DSA:3.40.30.10 4 195 1.6E-68 T 31-10-2018 Y89_0129 2692738787bbf84bd93535310e8355b6 195 PIRSF PIRSF006386 1 195 2.0E-68 T 31-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Y89_0129 2692738787bbf84bd93535310e8355b6 195 SUPERFAMILY SSF52833 1 194 1.06E-47 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0129 2692738787bbf84bd93535310e8355b6 195 Pfam PF01323 DSBA-like thioredoxin domain 4 194 7.0E-45 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Y89_1782 60a78f7b45b4e4377345297081f952b6 208 SUPERFAMILY SSF53098 22 201 3.68E-36 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_1782 60a78f7b45b4e4377345297081f952b6 208 Pfam PF00929 Exonuclease 34 194 6.5E-19 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_1782 60a78f7b45b4e4377345297081f952b6 208 SMART SM00479 31 204 8.8E-26 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Y89_1782 60a78f7b45b4e4377345297081f952b6 208 Gene3D G3DSA:3.30.420.10 22 202 3.0E-34 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 Gene3D G3DSA:1.20.81.30 58 173 2.0E-30 T 31-10-2018 Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 31-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 5.9E-33 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 Pfam PF00482 Type II secretion system (T2SS), protein F 276 397 5.2E-31 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 Gene3D G3DSA:1.20.81.30 258 369 5.8E-28 T 31-10-2018 Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 384 3.1E-19 T 31-10-2018 IPR003004 GspF/PilC family Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 3.1E-19 T 31-10-2018 IPR003004 GspF/PilC family Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 3.1E-19 T 31-10-2018 IPR003004 GspF/PilC family Y89_5038 a6ee19907f3bd8b92a3a6b239b767f9a 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 386 405 3.1E-19 T 31-10-2018 IPR003004 GspF/PilC family Y89_0663 d8f99861a3429e5a4e910672b8d4c49b 126 Pfam PF04379 ApaG domain 18 102 6.3E-36 T 31-10-2018 IPR007474 ApaG domain Y89_0663 d8f99861a3429e5a4e910672b8d4c49b 126 Gene3D G3DSA:2.60.40.1470 1 126 8.9E-50 T 31-10-2018 IPR036767 ApaG domain superfamily Y89_0663 d8f99861a3429e5a4e910672b8d4c49b 126 SUPERFAMILY SSF110069 4 126 3.01E-50 T 31-10-2018 IPR036767 ApaG domain superfamily Y89_0663 d8f99861a3429e5a4e910672b8d4c49b 126 Hamap MF_00791 Protein ApaG [apaG]. 1 126 34.651 T 31-10-2018 IPR023065 Uncharacterised protein family ApaG Y89_1608 ef1cce59dd5372ed5f2e2051e6ce8712 390 Pfam PF12698 ABC-2 family transporter protein 38 376 3.5E-21 T 31-10-2018 Y89_1608 ef1cce59dd5372ed5f2e2051e6ce8712 390 Gene3D G3DSA:3.40.1710.10 54 157 1.8E-5 T 31-10-2018 Y89_2029 dc07b0402faa1def170e228cce856999 240 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 231 5.6E-34 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Y89_2029 dc07b0402faa1def170e228cce856999 240 SUPERFAMILY SSF51695 2 237 1.65E-61 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_2029 dc07b0402faa1def170e228cce856999 240 Gene3D G3DSA:3.20.20.190 1 239 1.8E-62 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Y89_0163 765749c84ae4c550145d4714e4377691 331 Pfam PF16344 Domain of unknown function (DUF4974) 245 315 4.2E-9 T 31-10-2018 IPR032508 Protein FecR, C-terminal Y89_0163 765749c84ae4c550145d4714e4377691 331 PIRSF PIRSF018266 6 331 2.0E-86 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_0163 765749c84ae4c550145d4714e4377691 331 Gene3D G3DSA:2.60.120.1440 120 245 5.9E-19 T 31-10-2018 Y89_0163 765749c84ae4c550145d4714e4377691 331 Pfam PF16220 Domain of unknown function (DUF4880) 18 58 9.6E-12 T 31-10-2018 IPR032623 FecR, N-terminal Y89_0163 765749c84ae4c550145d4714e4377691 331 Pfam PF04773 FecR protein 125 215 2.5E-18 T 31-10-2018 IPR006860 FecR protein Y89_0163 765749c84ae4c550145d4714e4377691 331 Gene3D G3DSA:3.55.50.30 257 330 8.0E-9 T 31-10-2018 Y89_2019 b98b7b02cae443274b75fdf1c0ca32d4 469 Pfam PF00324 Amino acid permease 19 457 9.9E-116 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_2019 b98b7b02cae443274b75fdf1c0ca32d4 469 Gene3D G3DSA:1.20.1740.10 11 464 8.9E-57 T 31-10-2018 Y89_2019 b98b7b02cae443274b75fdf1c0ca32d4 469 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_2019 b98b7b02cae443274b75fdf1c0ca32d4 469 PIRSF PIRSF006060 1 468 1.8E-78 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 SUPERFAMILY SSF160544 238 343 8.37E-32 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 5.2E-142 T 31-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 Gene3D G3DSA:3.40.1690.10 211 348 1.1E-53 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 8.4E-43 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 8.4E-43 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 8.4E-43 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 8.4E-43 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 8.4E-43 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_3643 c82a6c5496a26e4875e6ad16a4473e0c 349 Pfam PF01312 FlhB HrpN YscU SpaS Family 4 340 1.2E-110 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_4544 f8dcae98c963c3b7b901bdf4c7ecbf08 415 Pfam PF00266 Aminotransferase class-V 34 401 3.6E-30 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_4544 f8dcae98c963c3b7b901bdf4c7ecbf08 415 Gene3D G3DSA:3.90.1150.10 29 401 2.9E-75 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_4544 f8dcae98c963c3b7b901bdf4c7ecbf08 415 SUPERFAMILY SSF53383 17 411 2.95E-56 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_4544 f8dcae98c963c3b7b901bdf4c7ecbf08 415 Gene3D G3DSA:3.40.640.10 42 304 2.9E-75 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 31-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 SUPERFAMILY SSF46609 1 90 1.31E-37 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 4.1E-37 T 31-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 SUPERFAMILY SSF54719 88 201 3.27E-43 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.9E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 3.9E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.9E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 3.9E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 3.9E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 5.0E-33 T 31-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 PIRSF PIRSF000349 1 203 7.9E-80 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 Gene3D G3DSA:1.10.287.990 20 89 3.1E-29 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_4958 5cfe4531640d7a7710ea4d31c0fc9e82 203 Gene3D G3DSA:2.40.500.20 90 203 4.1E-44 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Y89_3122 0efc836287d4f6901640c14e901a625f 330 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 29 303 3.6E-13 T 31-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y89_5265 9e91c467c2e1334779d8898da4209666 457 Pfam PF07690 Major Facilitator Superfamily 21 381 2.1E-45 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5265 9e91c467c2e1334779d8898da4209666 457 Gene3D G3DSA:1.20.1250.20 11 214 3.9E-38 T 31-10-2018 Y89_5265 9e91c467c2e1334779d8898da4209666 457 SUPERFAMILY SSF103473 9 436 6.15E-64 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5265 9e91c467c2e1334779d8898da4209666 457 Gene3D G3DSA:1.20.1250.20 231 430 1.9E-22 T 31-10-2018 Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 31-10-2018 IPR018313 Solute-binding protein family 3, conserved site Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 245 1.0E-65 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 SUPERFAMILY SSF53850 5 249 6.67E-73 T 31-10-2018 Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 Gene3D G3DSA:3.40.190.10 112 207 3.3E-70 T 31-10-2018 Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 Gene3D G3DSA:3.40.190.10 28 244 3.3E-70 T 31-10-2018 Y89_5827 cdfed3b0033c692d21e244623cfc0333 250 SMART SM00062 26 248 4.2E-63 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2194 23ee47f0c793a9b292fed296b030c7dc 132 SUPERFAMILY SSF51316 7 131 9.77E-57 T 31-10-2018 IPR011057 Mss4-like superfamily Y89_2194 23ee47f0c793a9b292fed296b030c7dc 132 Gene3D G3DSA:2.170.150.20 2 132 1.8E-58 T 31-10-2018 Y89_2194 23ee47f0c793a9b292fed296b030c7dc 132 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 37.691 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y89_2194 23ee47f0c793a9b292fed296b030c7dc 132 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 9 131 3.5E-54 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y89_2194 23ee47f0c793a9b292fed296b030c7dc 132 Pfam PF01641 SelR domain 11 128 2.5E-52 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Y89_3963 60dba2230b4ea87af8ef3e4cafe735d3 328 Gene3D G3DSA:3.40.50.300 6 168 6.0E-25 T 31-10-2018 Y89_3963 60dba2230b4ea87af8ef3e4cafe735d3 328 Pfam PF14524 Wzt C-terminal domain 175 310 1.5E-19 T 31-10-2018 IPR029439 Wzt, C-terminal Y89_3963 60dba2230b4ea87af8ef3e4cafe735d3 328 Gene3D G3DSA:2.70.50.60 169 308 6.4E-10 T 31-10-2018 Y89_3963 60dba2230b4ea87af8ef3e4cafe735d3 328 SUPERFAMILY SSF52540 9 141 7.78E-26 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5794 52e954b634f34b8077f7d5e718487df3 190 Pfam PF13511 Domain of unknown function (DUF4124) 8 57 9.7E-15 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_5909 6dbc91f8622197f412e5f42702cacf2c 160 SUPERFAMILY SSF54637 11 151 1.81E-24 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5909 6dbc91f8622197f412e5f42702cacf2c 160 Pfam PF14539 Domain of unknown function (DUF4442) 9 150 2.1E-29 T 31-10-2018 IPR027961 Protein of unknown function DUF4442 Y89_5909 6dbc91f8622197f412e5f42702cacf2c 160 Gene3D G3DSA:3.10.129.10 15 156 9.4E-28 T 31-10-2018 Y89_0984 bf1acb9e66c69d9c0c711d4f67be99f6 335 Pfam PF14238 Domain of unknown function (DUF4340) 70 249 3.1E-13 T 31-10-2018 IPR025641 Domain of unknown function DUF4340 Y89_5825 58f32a4406bba97d07e570d40f0a1c38 229 Pfam PF04367 Protein of unknown function (DUF502) 72 175 3.4E-12 T 31-10-2018 IPR007462 Protein of unknown function DUF502 Y89_3330 5609146fd3b909c4a488296408605ade 402 Gene3D G3DSA:1.20.1250.20 16 398 2.3E-36 T 31-10-2018 Y89_3330 5609146fd3b909c4a488296408605ade 402 SUPERFAMILY SSF103473 22 400 1.44E-44 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3330 5609146fd3b909c4a488296408605ade 402 Pfam PF07690 Major Facilitator Superfamily 230 399 1.2E-10 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3330 5609146fd3b909c4a488296408605ade 402 Hamap MF_01118 Uncharacterized MFS-type transporter YhhS [yhhS]. 13 400 45.266 T 31-10-2018 IPR023008 Uncharacterized MFS-type transporter YhhS-like Y89_4358 a2b4ddc59a50d9b0301b7b8d487ea353 337 Gene3D G3DSA:3.40.47.10 176 337 2.3E-49 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4358 a2b4ddc59a50d9b0301b7b8d487ea353 337 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 188 4.6E-23 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_4358 a2b4ddc59a50d9b0301b7b8d487ea353 337 SUPERFAMILY SSF53901 8 329 1.96E-57 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_4358 a2b4ddc59a50d9b0301b7b8d487ea353 337 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 242 328 3.1E-27 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_4358 a2b4ddc59a50d9b0301b7b8d487ea353 337 Gene3D G3DSA:3.40.47.10 1 175 1.0E-67 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 Gene3D G3DSA:3.40.50.720 6 250 1.5E-79 T 31-10-2018 Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 190 0.0013 T 31-10-2018 Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 SUPERFAMILY SSF51735 10 249 3.19E-76 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0194 cf480524004bb4b9e9b4733de4dd8cd1 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 249 2.5E-61 T 31-10-2018 Y89_1606 7743ca3a3257e3530404f304262a3de2 161 Pfam PF06146 Phosphate-starvation-inducible E 59 127 2.2E-17 T 31-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like Y89_1606 7743ca3a3257e3530404f304262a3de2 161 PIRSF PIRSF029598 2 145 8.7E-40 T 31-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 Y89_1659 452e90573f08f7224af68aef2a8950e7 245 Gene3D G3DSA:2.30.30.760 185 245 2.7E-15 T 31-10-2018 Y89_1659 452e90573f08f7224af68aef2a8950e7 245 SMART SM00858 120 182 1.7E-9 T 31-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Y89_1659 452e90573f08f7224af68aef2a8950e7 245 Gene3D G3DSA:3.90.1210.10 119 184 4.3E-6 T 31-10-2018 Y89_1659 452e90573f08f7224af68aef2a8950e7 245 Pfam PF13144 Chaperone for flagella basal body P-ring formation 45 243 7.9E-63 T 31-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Y89_1659 452e90573f08f7224af68aef2a8950e7 245 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 108 244 9.1E-40 T 31-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Y89_5935 1b27bf52989a4af94c5a105e81af0a96 160 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 33.715 T 31-10-2018 IPR003791 Protein of unknown function UPF0178 Y89_5935 1b27bf52989a4af94c5a105e81af0a96 160 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 146 2.1E-42 T 31-10-2018 IPR003791 Protein of unknown function UPF0178 Y89_2761 6af78a719d29a6f15f75c6883057bfa9 346 SMART SM00244 38 242 2.5E-4 T 31-10-2018 IPR001107 Band 7 domain Y89_2761 6af78a719d29a6f15f75c6883057bfa9 346 Pfam PF01145 SPFH domain / Band 7 family 42 259 4.3E-21 T 31-10-2018 IPR001107 Band 7 domain Y89_2761 6af78a719d29a6f15f75c6883057bfa9 346 Gene3D G3DSA:3.30.479.30 116 244 2.2E-6 T 31-10-2018 Y89_0058 b6207c8750a56bfebf0d7e63b9d7dab5 127 SMART SM00530 6 61 3.3E-10 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0058 b6207c8750a56bfebf0d7e63b9d7dab5 127 Pfam PF01381 Helix-turn-helix 9 61 3.1E-11 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0058 b6207c8750a56bfebf0d7e63b9d7dab5 127 Gene3D G3DSA:1.10.260.40 1 75 2.4E-13 T 31-10-2018 Y89_0058 b6207c8750a56bfebf0d7e63b9d7dab5 127 SUPERFAMILY SSF47413 1 65 1.75E-13 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0602 0d503ca5c8b7ed7e328bcb69efdff287 192 SUPERFAMILY SSF53098 99 179 3.03E-19 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_0602 0d503ca5c8b7ed7e328bcb69efdff287 192 Pfam PF00665 Integrase core domain 106 179 1.6E-16 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_0602 0d503ca5c8b7ed7e328bcb69efdff287 192 Pfam PF13276 HTH-like domain 29 81 1.2E-13 T 31-10-2018 IPR025948 HTH-like domain Y89_0602 0d503ca5c8b7ed7e328bcb69efdff287 192 Gene3D G3DSA:3.30.420.10 97 185 1.6E-11 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_2413 71c4ab2ca5ac1f5a173b39f626f6ac56 141 SUPERFAMILY SSF54523 20 102 4.63E-12 T 31-10-2018 Y89_2413 71c4ab2ca5ac1f5a173b39f626f6ac56 141 Gene3D G3DSA:3.30.700.10 20 100 2.7E-8 T 31-10-2018 Y89_2413 71c4ab2ca5ac1f5a173b39f626f6ac56 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 40 4.0E-6 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2413 71c4ab2ca5ac1f5a173b39f626f6ac56 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 17 40 1.1E-6 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_1651 ecad8bdf07de865f5e26470b660f87a8 292 SUPERFAMILY SSF103481 196 291 4.05E-16 T 31-10-2018 Y89_1651 ecad8bdf07de865f5e26470b660f87a8 292 SUPERFAMILY SSF103481 41 145 5.49E-15 T 31-10-2018 Y89_1651 ecad8bdf07de865f5e26470b660f87a8 292 Pfam PF00892 EamA-like transporter family 154 286 1.1E-11 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_1651 ecad8bdf07de865f5e26470b660f87a8 292 Pfam PF00892 EamA-like transporter family 13 141 1.1E-15 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 SUPERFAMILY SSF50715 4 196 1.73E-55 T 31-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 190 4.9E-29 T 31-10-2018 IPR020057 Ribosomal protein L25, beta domain Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 97 1.0E-45 T 31-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 Gene3D G3DSA:2.40.240.10 3 97 1.2E-31 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 188 30.687 T 31-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 Pfam PF01386 Ribosomal L25p family 6 94 5.4E-27 T 31-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 175 2.1E-45 T 31-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Y89_5282 ab3a69d462ce25ee28348799c1a5603f 204 Gene3D G3DSA:2.170.120.20 99 197 4.2E-26 T 31-10-2018 IPR037121 Ribosomal protein L25, C-terminal Y89_5670 a53be07297a4b1c9ea48cf4655e93fda 401 Pfam PF04932 O-Antigen ligase 198 322 1.2E-10 T 31-10-2018 IPR007016 O-antigen ligase-related Y89_5644 e2f6c9eaf39c18340677a212f451729f 482 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 29 452 3.8E-140 T 31-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 Y89_5644 e2f6c9eaf39c18340677a212f451729f 482 Pfam PF02321 Outer membrane efflux protein 36 217 6.9E-24 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5644 e2f6c9eaf39c18340677a212f451729f 482 Pfam PF02321 Outer membrane efflux protein 244 437 1.4E-30 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_5644 e2f6c9eaf39c18340677a212f451729f 482 SUPERFAMILY SSF56954 32 451 6.15E-90 T 31-10-2018 Y89_5644 e2f6c9eaf39c18340677a212f451729f 482 Gene3D G3DSA:1.20.1600.10 30 458 4.0E-113 T 31-10-2018 Y89_4762 825566c1afa39867e6aab736ecae5c33 183 PIRSF PIRSF037290 2 181 2.9E-72 T 31-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 Y89_4762 825566c1afa39867e6aab736ecae5c33 183 Gene3D G3DSA:3.40.50.300 25 138 2.4E-35 T 31-10-2018 Y89_4762 825566c1afa39867e6aab736ecae5c33 183 SUPERFAMILY SSF52540 26 139 3.82E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0247 1591137f64509568f6dc06cc5048b8b0 416 Pfam PF03573 outer membrane porin, OprD family 26 414 6.1E-151 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_0247 1591137f64509568f6dc06cc5048b8b0 416 Gene3D G3DSA:2.40.160.10 31 416 3.8E-164 T 31-10-2018 IPR023614 Porin domain superfamily Y89_2951 55f78876699d1b66c554239db0b82ec9 339 Gene3D G3DSA:3.60.130.10 29 332 1.7E-96 T 31-10-2018 Y89_2951 55f78876699d1b66c554239db0b82ec9 339 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 39 330 2.4E-49 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_2951 55f78876699d1b66c554239db0b82ec9 339 SUPERFAMILY SSF51197 27 332 1.97E-83 T 31-10-2018 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 241 428 1.0E-30 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 215 8.6E-49 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 SUPERFAMILY SSF53067 234 470 5.48E-46 T 31-10-2018 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 PIRSF PIRSF000538 1 471 3.1E-101 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 Gene3D G3DSA:3.30.420.40 234 471 2.8E-55 T 31-10-2018 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 Gene3D G3DSA:3.30.420.40 2 233 6.3E-72 T 31-10-2018 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 342 362 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Y89_3851 3d4bed41977db426b5b32acc1424c46d 471 SUPERFAMILY SSF53067 3 235 2.2E-66 T 31-10-2018 Y89_4735 0c4b91e4505b043a4a61ee1ca8bb75a1 314 SUPERFAMILY SSF54534 157 260 1.24E-24 T 31-10-2018 Y89_4735 0c4b91e4505b043a4a61ee1ca8bb75a1 314 Pfam PF13145 PPIC-type PPIASE domain 139 270 4.3E-22 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Y89_4735 0c4b91e4505b043a4a61ee1ca8bb75a1 314 Gene3D G3DSA:3.10.50.40 138 283 1.5E-25 T 31-10-2018 Y89_4735 0c4b91e4505b043a4a61ee1ca8bb75a1 314 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 195 216 - T 31-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Y89_3485 32618bff9a35c0f9c7dbf682e144e324 120 Pfam PF04320 Protein with unknown function (DUF469) 15 116 3.9E-32 T 31-10-2018 IPR007416 Protein of unknown function DUF469 Y89_6381 bbf2de03b8287e6ccbc117e405961e5b 193 SUPERFAMILY SSF53955 29 183 9.38E-10 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5111 bbf2de03b8287e6ccbc117e405961e5b 193 SUPERFAMILY SSF53955 29 183 9.38E-10 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 10 256 1.2E-81 T 31-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 SUPERFAMILY SSF53850 13 260 4.21E-66 T 31-10-2018 Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 257 1.6E-62 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 Gene3D G3DSA:3.40.190.10 116 216 5.9E-77 T 31-10-2018 Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 SMART SM00062 30 259 9.9E-74 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_1159 f2cc1f1fde9468a35b85bbcb1a245031 263 Gene3D G3DSA:3.40.190.10 32 255 5.9E-77 T 31-10-2018 Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 Gene3D G3DSA:1.10.10.10 17 91 1.9E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 SUPERFAMILY SSF46785 23 97 3.91E-13 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 Pfam PF09339 IclR helix-turn-helix domain 25 76 6.5E-15 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 Pfam PF01614 Bacterial transcriptional regulator 145 245 3.4E-7 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 Gene3D G3DSA:3.30.450.40 99 257 1.4E-17 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 SUPERFAMILY SSF55781 81 238 5.23E-21 T 31-10-2018 Y89_0865 d288712bdc3a1ce71ad1ec05bd179cfa 272 SMART SM00346 23 113 2.6E-17 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_4140 c69ad7dbc5d9d86953eebddd8a3092ab 319 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 66 281 2.5E-16 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_4140 c69ad7dbc5d9d86953eebddd8a3092ab 319 SUPERFAMILY SSF51197 23 289 3.62E-38 T 31-10-2018 Y89_4140 c69ad7dbc5d9d86953eebddd8a3092ab 319 Gene3D G3DSA:3.60.130.10 19 291 8.0E-29 T 31-10-2018 Y89_6079 38ce516703ad8d0d22ca2ad355a42497 206 Pfam PF01810 LysE type translocator 15 203 4.8E-19 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_3790 dcf64c2e19987f934f97f95243b89b51 69 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 3 45 1.1E-21 T 31-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Y89_3790 dcf64c2e19987f934f97f95243b89b51 69 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 2.9E-17 T 31-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Y89_2308 d53b336d23657932a6cc95b9ade63e88 399 Gene3D G3DSA:1.10.443.10 183 388 5.4E-19 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_2308 d53b336d23657932a6cc95b9ade63e88 399 Pfam PF00589 Phage integrase family 191 368 5.2E-9 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_2308 d53b336d23657932a6cc95b9ade63e88 399 SUPERFAMILY SSF56349 64 378 6.36E-29 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_3702 f9030691966566c4458e213501b92c55 564 Pfam PF03814 Potassium-transporting ATPase A subunit 11 560 8.9E-245 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y89_3702 f9030691966566c4458e213501b92c55 564 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 562 35.44 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y89_3702 f9030691966566c4458e213501b92c55 564 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 3 562 6.4E-230 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y89_3702 f9030691966566c4458e213501b92c55 564 PIRSF PIRSF001294 1 564 1.9E-243 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Y89_1146 56ee0c3dff1fdad7a2861dbe6328a0df 131 Pfam PF08859 DGC domain 13 115 8.2E-31 T 31-10-2018 IPR014958 DGC Y89_1146 56ee0c3dff1fdad7a2861dbe6328a0df 131 PIRSF PIRSF037181 1 130 5.6E-53 T 31-10-2018 IPR014958 DGC Y89_0428 c9a509cc581483c2ee372c99ad7e2fe3 189 SUPERFAMILY SSF143456 7 189 1.3E-61 T 31-10-2018 Y89_0428 c9a509cc581483c2ee372c99ad7e2fe3 189 Gene3D G3DSA:3.40.1740.10 1 189 2.1E-77 T 31-10-2018 Y89_0428 c9a509cc581483c2ee372c99ad7e2fe3 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 7 189 36.972 T 31-10-2018 IPR003774 Protein of unknown function UPF0301 Y89_0428 c9a509cc581483c2ee372c99ad7e2fe3 189 Pfam PF02622 Uncharacterized ACR, COG1678 18 176 7.9E-47 T 31-10-2018 IPR003774 Protein of unknown function UPF0301 Y89_2990 674ddbd4cae7dfb201bedc6123a5b8fe 238 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 57 211 3.6E-36 T 31-10-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 SUPERFAMILY SSF58104 251 560 1.57E-79 T 31-10-2018 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 SMART SM00283 298 559 7.6E-79 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 Pfam PF17200 Single Cache domain 2 50 195 3.2E-25 T 31-10-2018 IPR033480 Single Cache domain 2 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 Gene3D G3DSA:3.30.450.20 38 185 1.6E-29 T 31-10-2018 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 SMART SM01049 44 135 4.3E-26 T 31-10-2018 IPR033480 Single Cache domain 2 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 SMART SM00304 229 283 6.5E-14 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 343 525 4.5E-42 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 Gene3D G3DSA:1.10.287.950 229 560 2.7E-77 T 31-10-2018 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 Pfam PF00672 HAMP domain 230 279 6.1E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.7E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 425 454 2.7E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 423 2.7E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_2436 b89680e0162cf0805249e405e95b29c1 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 319 348 2.7E-24 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Y89_5090 a127bb3b37a14d85aa01f91a390c77ff 176 Pfam PF08805 PilS N terminal 45 174 4.0E-30 T 31-10-2018 IPR014911 Type 4 secretion system, PilS, N-terminal Y89_5090 a127bb3b37a14d85aa01f91a390c77ff 176 Gene3D G3DSA:3.30.1690.10 41 175 2.0E-33 T 31-10-2018 Y89_5090 a127bb3b37a14d85aa01f91a390c77ff 176 SUPERFAMILY SSF54523 41 174 1.2E-35 T 31-10-2018 Y89_0977 94b7971ee5142b3586c40c68840b4c83 205 SUPERFAMILY SSF142695 3 172 1.7E-65 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0977 94b7971ee5142b3586c40c68840b4c83 205 Pfam PF00925 GTP cyclohydrolase II 8 170 1.4E-67 T 31-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0977 94b7971ee5142b3586c40c68840b4c83 205 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 45.084 T 31-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0977 94b7971ee5142b3586c40c68840b4c83 205 Gene3D G3DSA:3.40.50.10990 2 173 9.3E-73 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_0977 94b7971ee5142b3586c40c68840b4c83 205 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 1.3E-80 T 31-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Y89_3600 9b374a043233df1e1cb90465fc36da64 243 SUPERFAMILY SSF56235 2 237 2.24E-36 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_3600 9b374a043233df1e1cb90465fc36da64 243 Pfam PF00227 Proteasome subunit 4 182 5.4E-9 T 31-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Y89_3600 9b374a043233df1e1cb90465fc36da64 243 PIRSF PIRSF009120 1 242 2.7E-106 T 31-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 Y89_3600 9b374a043233df1e1cb90465fc36da64 243 Gene3D G3DSA:3.60.20.10 2 232 3.8E-28 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_4203 dabe725060d671c3a2edb5902e508834 122 Pfam PF09961 Uncharacterized protein conserved in bacteria (DUF2195) 6 121 6.7E-37 T 31-10-2018 IPR018696 Protein of unknown function DUF2195 Y89_0496 905f119326c4275c575ab4f87ed6d741 189 Gene3D G3DSA:1.10.357.10 2 188 1.8E-45 T 31-10-2018 Y89_0496 905f119326c4275c575ab4f87ed6d741 189 SUPERFAMILY SSF48498 79 187 2.91E-18 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_0496 905f119326c4275c575ab4f87ed6d741 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 7.0E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_0496 905f119326c4275c575ab4f87ed6d741 189 SUPERFAMILY SSF46689 8 72 1.64E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_1730 a10c6d78c5f7b9b678705d618cc08232 244 Gene3D G3DSA:1.10.150.690 30 120 4.0E-30 T 31-10-2018 Y89_1730 a10c6d78c5f7b9b678705d618cc08232 244 Pfam PF09836 Putative DNA-binding domain 6 90 1.1E-27 T 31-10-2018 IPR018640 Putative DNA-binding domain, bacteria Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 2 129 28.087 T 31-10-2018 IPR023006 Uncharacterised protein family UPF0225 Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 Gene3D G3DSA:3.10.450.50 2 156 1.1E-51 T 31-10-2018 Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 SUPERFAMILY SSF54427 25 130 2.63E-33 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 SUPERFAMILY SSF103642 133 155 3.6E-7 T 31-10-2018 Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 Pfam PF02810 SEC-C motif 6 20 3.1E-4 T 31-10-2018 IPR004027 SEC-C motif Y89_4316 f9c358a4cdba2bdddc6ece461a40630c 157 Pfam PF02810 SEC-C motif 136 154 4.2E-7 T 31-10-2018 IPR004027 SEC-C motif Y89_1915 a763ba54788e1d1d8d74be0f360a1149 218 Gene3D G3DSA:2.30.30.830 82 148 8.9E-11 T 31-10-2018 Y89_1915 a763ba54788e1d1d8d74be0f360a1149 218 Pfam PF11356 Type II secretion system protein C 19 147 4.3E-22 T 31-10-2018 IPR024961 Type II secretion system protein C, N-terminal Y89_4786 3abe343d471382412c5c9a76b0ff8765 421 Pfam PF00437 Type II/IV secretion system protein 92 368 4.2E-91 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_4786 3abe343d471382412c5c9a76b0ff8765 421 Gene3D G3DSA:3.40.50.300 189 418 7.3E-66 T 31-10-2018 Y89_4786 3abe343d471382412c5c9a76b0ff8765 421 SUPERFAMILY SSF52540 68 373 4.95E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4786 3abe343d471382412c5c9a76b0ff8765 421 Gene3D G3DSA:3.30.450.380 14 186 2.9E-40 T 31-10-2018 Y89_3613 988e1490f8c4a04bd74ba9d2ca304236 115 Gene3D G3DSA:1.25.40.10 1 115 1.8E-56 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_3613 988e1490f8c4a04bd74ba9d2ca304236 115 TIGRFAM TIGR02508 type_III_yscG: type III secretion protein, YscG family 1 114 2.0E-42 T 31-10-2018 IPR013348 Type III secretion system YscG GO:0009405 Y89_3613 988e1490f8c4a04bd74ba9d2ca304236 115 Pfam PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) 1 115 8.2E-57 T 31-10-2018 IPR013348 Type III secretion system YscG GO:0009405 Y89_1064 44b02a76e6f8c1638ba9cc911a3e7a3c 244 Gene3D G3DSA:3.40.190.10 38 238 1.5E-13 T 31-10-2018 Y89_1064 44b02a76e6f8c1638ba9cc911a3e7a3c 244 SUPERFAMILY SSF53850 32 238 5.03E-23 T 31-10-2018 Y89_1064 44b02a76e6f8c1638ba9cc911a3e7a3c 244 Gene3D G3DSA:3.40.190.10 115 206 1.5E-13 T 31-10-2018 Y89_2246 f4a3128ee0d84a634372ca7b0d60a33b 185 Pfam PF11188 Protein of unknown function (DUF2975) 71 181 1.6E-10 T 31-10-2018 IPR021354 Protein of unknown function DUF2975 Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 SUPERFAMILY SSF54637 8 137 1.5E-41 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 PIRSF PIRSF003230 3 142 3.3E-44 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 130 6.7E-33 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 10 135 4.5E-48 T 31-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 Gene3D G3DSA:3.10.129.10 3 142 8.9E-45 T 31-10-2018 Y89_4387 34f9a9bcff40a9f0ac5285115a39cdea 148 Pfam PF03061 Thioesterase superfamily 24 107 2.3E-17 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_3796 40c12cd486a15ac1a64961910edc90a4 278 Pfam PF10118 Predicted metal-dependent hydrolase 16 262 3.0E-91 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_3796 40c12cd486a15ac1a64961910edc90a4 278 PIRSF PIRSF007580 1 278 7.0E-103 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_5261 45ac76333faf0e96da46e33266679e2f 180 SMART SM00972 119 177 7.4E-22 T 31-10-2018 IPR007893 Spore coat protein U Y89_5261 45ac76333faf0e96da46e33266679e2f 180 Pfam PF05229 Spore Coat Protein U domain 31 177 2.1E-36 T 31-10-2018 IPR007893 Spore coat protein U Y89_3629 71ae2168876ff05ddbc76cda69aaa7d0 144 TIGRFAM TIGR02572 LcrR: type III secretion system regulator LcrR 3 140 7.0E-72 T 31-10-2018 IPR013405 Type III secretion system regulator, LcrR Y89_3629 71ae2168876ff05ddbc76cda69aaa7d0 144 Pfam PF09621 Type III secretion system regulator (LcrR) 3 140 7.5E-71 T 31-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 Y89_0658 2f979bffb9c9d75feb01564ea3123238 517 Pfam PF04293 SpoVR like protein 12 443 1.4E-177 T 31-10-2018 IPR007390 Sporulation stage V, protein R Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 SMART SM00448 8 123 2.7E-14 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 Gene3D G3DSA:3.40.50.2300 1 133 2.5E-21 T 31-10-2018 Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 Pfam PF08668 HDOD domain 162 348 9.4E-40 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 SUPERFAMILY SSF109604 150 397 1.7E-37 T 31-10-2018 Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 SUPERFAMILY SSF52172 10 127 1.25E-22 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 Gene3D G3DSA:1.10.3210.10 142 395 2.0E-32 T 31-10-2018 Y89_0285 c8855a12dfef68da91bf853ef525fd6e 399 Pfam PF00072 Response regulator receiver domain 10 123 9.7E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_2353 c43367bca41b117eaf6e1af9741d12f9 709 SUPERFAMILY SSF47413 3 43 1.13E-6 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2353 c43367bca41b117eaf6e1af9741d12f9 709 Gene3D G3DSA:1.10.260.40 1 56 9.6E-7 T 31-10-2018 Y89_2353 c43367bca41b117eaf6e1af9741d12f9 709 Pfam PF13560 Helix-turn-helix domain 7 60 3.1E-6 T 31-10-2018 Y89_5227 3ff70b6d94b3b8b8e95cfd52bd149f2c 323 Gene3D G3DSA:3.40.50.720 168 317 1.2E-37 T 31-10-2018 Y89_5227 3ff70b6d94b3b8b8e95cfd52bd149f2c 323 Pfam PF02625 XdhC and CoxI family 19 69 1.7E-14 T 31-10-2018 IPR003777 XdhC- CoxI Y89_5227 3ff70b6d94b3b8b8e95cfd52bd149f2c 323 Pfam PF13478 XdhC Rossmann domain 169 311 7.1E-35 T 31-10-2018 IPR027051 XdhC Rossmann domain Y89_6254 0faa83cef58f165d87c0dd7dd12d9935 262 SUPERFAMILY SSF56601 34 251 6.01E-36 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Y89_6254 0faa83cef58f165d87c0dd7dd12d9935 262 Gene3D G3DSA:3.40.710.10 9 262 1.1E-82 T 31-10-2018 Y89_6254 0faa83cef58f165d87c0dd7dd12d9935 262 Pfam PF00905 Penicillin binding protein transpeptidase domain 55 249 2.3E-24 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Y89_6022 cf7d7b373d58459ed859a005519c3e73 491 SUPERFAMILY SSF69572 235 348 8.37E-28 T 31-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Y89_6022 cf7d7b373d58459ed859a005519c3e73 491 Gene3D G3DSA:3.40.50.720 218 455 8.3E-27 T 31-10-2018 Y89_6022 cf7d7b373d58459ed859a005519c3e73 491 Pfam PF00899 ThiF family 235 349 3.0E-21 T 31-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y89_1987 4eabe5f4627c418e6e98ad9d38a37af9 467 SUPERFAMILY SSF48695 231 383 1.93E-5 T 31-10-2018 IPR036280 Multiheme cytochrome superfamily Y89_1987 4eabe5f4627c418e6e98ad9d38a37af9 467 Gene3D G3DSA:1.10.760.10 338 467 3.9E-22 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_1987 4eabe5f4627c418e6e98ad9d38a37af9 467 SUPERFAMILY SSF46626 345 467 1.83E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0492 00b387c54a009637dba8d6f16722a8d4 323 Gene3D G3DSA:2.60.120.1440 110 241 4.3E-21 T 31-10-2018 Y89_0492 00b387c54a009637dba8d6f16722a8d4 323 Pfam PF16220 Domain of unknown function (DUF4880) 16 55 2.7E-14 T 31-10-2018 IPR032623 FecR, N-terminal Y89_0492 00b387c54a009637dba8d6f16722a8d4 323 Pfam PF04773 FecR protein 122 209 2.7E-17 T 31-10-2018 IPR006860 FecR protein Y89_0492 00b387c54a009637dba8d6f16722a8d4 323 PIRSF PIRSF018266 5 323 4.4E-85 T 31-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component Y89_5820 5133146cc597ca07aa270783c103aee2 750 Pfam PF05170 AsmA family 1 635 2.8E-192 T 31-10-2018 IPR007844 AsmA Y89_4842 776552ad6ec9b88aa457ab6f12c2707d 80 Gene3D G3DSA:1.10.10.10 1 80 3.6E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4842 776552ad6ec9b88aa457ab6f12c2707d 80 Pfam PF09012 FeoC like transcriptional regulator 3 67 6.2E-14 T 31-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC Y89_4842 776552ad6ec9b88aa457ab6f12c2707d 80 SUPERFAMILY SSF46785 1 72 8.59E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0229 5e3c639b0503e3a4321cde587720e591 352 Pfam PF13416 Bacterial extracellular solute-binding protein 51 316 9.0E-42 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein Y89_0229 5e3c639b0503e3a4321cde587720e591 352 Gene3D G3DSA:3.40.190.10 135 336 2.8E-117 T 31-10-2018 Y89_0229 5e3c639b0503e3a4321cde587720e591 352 Gene3D G3DSA:3.40.190.10 35 330 2.8E-117 T 31-10-2018 Y89_0229 5e3c639b0503e3a4321cde587720e591 352 SUPERFAMILY SSF53850 31 349 6.52E-64 T 31-10-2018 Y89_1610 d16ba9260a3c6529cf5151beb1fb3802 113 Pfam PF07119 Protein of unknown function (DUF1375) 11 99 4.4E-21 T 31-10-2018 IPR010780 Protein of unknown function DUF1375 Y89_4357 89bf9190cc523f48e3ce8f3728b10e80 301 SMART SM00849 21 221 2.0E-26 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4357 89bf9190cc523f48e3ce8f3728b10e80 301 Gene3D G3DSA:3.60.15.10 1 301 4.4E-125 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_4357 89bf9190cc523f48e3ce8f3728b10e80 301 Pfam PF00753 Metallo-beta-lactamase superfamily 18 221 2.0E-26 T 31-10-2018 IPR001279 Metallo-beta-lactamase Y89_4357 89bf9190cc523f48e3ce8f3728b10e80 301 SUPERFAMILY SSF56281 14 269 7.6E-53 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Y89_3106 df3430516cecdcef96730840808c9639 150 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 10 146 2.4E-46 T 31-10-2018 IPR011971 Conserved hypothetical protein CHP02284 Y89_3106 df3430516cecdcef96730840808c9639 150 Gene3D G3DSA:1.20.1260.10 1 150 2.0E-61 T 31-10-2018 IPR012347 Ferritin-like Y89_3106 df3430516cecdcef96730840808c9639 150 PIRSF PIRSF029477 1 150 1.6E-73 T 31-10-2018 IPR016920 Uncharacterised conserved protein UCP029477 Y89_3106 df3430516cecdcef96730840808c9639 150 SUPERFAMILY SSF47240 8 148 5.41E-8 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_3106 df3430516cecdcef96730840808c9639 150 Pfam PF09537 Domain of unknown function (DUF2383) 9 118 8.1E-40 T 31-10-2018 IPR019052 Domain of unknown function DUF2383 Y89_2268 2552c98b6cac2922e43d4a28fa162e77 293 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 282 1.0E-71 T 31-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 Y89_2268 2552c98b6cac2922e43d4a28fa162e77 293 Pfam PF04261 Dyp-type peroxidase family 35 281 3.8E-35 T 31-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 Y89_2268 2552c98b6cac2922e43d4a28fa162e77 293 SUPERFAMILY SSF54909 1 284 1.27E-74 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_4612 fdb3f843768ca52a5fe54d64334c1306 502 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 7 481 1.3E-235 T 31-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Y89_4612 fdb3f843768ca52a5fe54d64334c1306 502 Gene3D G3DSA:3.40.309.10 250 450 6.0E-143 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_4612 fdb3f843768ca52a5fe54d64334c1306 502 SUPERFAMILY SSF53720 4 483 1.44E-146 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4612 fdb3f843768ca52a5fe54d64334c1306 502 Gene3D G3DSA:3.40.605.10 24 458 6.0E-143 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_4612 fdb3f843768ca52a5fe54d64334c1306 502 Pfam PF00171 Aldehyde dehydrogenase family 13 477 4.2E-138 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_4815 dd8651bf76fda4026a6a8de97b728261 257 Gene3D G3DSA:1.10.12.10 199 255 4.2E-12 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Y89_4815 dd8651bf76fda4026a6a8de97b728261 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 254 3.2E-49 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_4815 dd8651bf76fda4026a6a8de97b728261 257 Gene3D G3DSA:3.90.226.10 1 197 3.0E-59 T 31-10-2018 Y89_4815 dd8651bf76fda4026a6a8de97b728261 257 SUPERFAMILY SSF52096 1 254 6.26E-71 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_1168 c58dd3ca02a1f519b368943a4088d26e 160 Gene3D G3DSA:3.10.450.50 5 129 3.6E-26 T 31-10-2018 Y89_1168 c58dd3ca02a1f519b368943a4088d26e 160 Pfam PF12680 SnoaL-like domain 9 110 3.1E-17 T 31-10-2018 IPR037401 SnoaL-like domain Y89_1168 c58dd3ca02a1f519b368943a4088d26e 160 SUPERFAMILY SSF54427 2 133 2.6E-30 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 135 163 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 8 290 4.1E-141 T 31-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 Gene3D G3DSA:2.60.130.10 1 310 1.5E-120 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 SUPERFAMILY SSF49482 4 293 1.06E-95 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 Pfam PF04444 Catechol dioxygenase N terminus 27 95 2.2E-24 T 31-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 Y89_2685 d97d048e3524a6ffcbed8c84f60e7d16 310 Pfam PF00775 Dioxygenase 105 291 3.0E-67 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Y89_4062 e02e7f97573d470d7f30bc041d128764 424 SUPERFAMILY SSF56935 24 424 9.77E-92 T 31-10-2018 Y89_4062 e02e7f97573d470d7f30bc041d128764 424 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 424 4.3E-135 T 31-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_4062 e02e7f97573d470d7f30bc041d128764 424 Gene3D G3DSA:2.40.160.60 24 424 3.9E-118 T 31-10-2018 Y89_0820 619180055ecd3b89ecb5a1a3c7d8541a 351 SUPERFAMILY SSF51412 4 349 3.05E-61 T 31-10-2018 Y89_0820 619180055ecd3b89ecb5a1a3c7d8541a 351 Pfam PF03060 Nitronate monooxygenase 5 348 2.2E-80 T 31-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Y89_0820 619180055ecd3b89ecb5a1a3c7d8541a 351 Gene3D G3DSA:3.20.20.70 1 351 1.8E-125 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2727 f53806def896b54f7e82edd2203bc759 303 Pfam PF13557 Putative MetA-pathway of phenol degradation 55 299 2.1E-56 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Y89_2899 0650855b9d3d25b91293856acb629e90 1283 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 913 983 9.5E-22 T 31-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y89_2899 0650855b9d3d25b91293856acb629e90 1283 Pfam PF06791 Prophage tail length tape measure protein 201 336 6.9E-24 T 31-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Y89_2899 0650855b9d3d25b91293856acb629e90 1283 Pfam PF06791 Prophage tail length tape measure protein 327 474 8.2E-42 T 31-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Y89_1650 5cb97ce4654c7ea6ca941fca15f8a3a0 342 Pfam PF13515 Fusaric acid resistance protein-like 190 322 1.4E-9 T 31-10-2018 Y89_1650 5cb97ce4654c7ea6ca941fca15f8a3a0 342 Pfam PF11168 Protein of unknown function (DUF2955) 14 153 4.4E-48 T 31-10-2018 IPR022604 Protein of unknown function DUF2955 Y89_1650 5cb97ce4654c7ea6ca941fca15f8a3a0 342 PIRSF PIRSF029594 7 342 5.8E-178 T 31-10-2018 IPR016926 Uncharacterised conserved protein UCP029594 Y89_3291 39d3e4dcd5d139e476a4314f1431acec 84 Pfam PF06568 Domain of unknown function (DUF1127) 30 66 2.8E-7 T 31-10-2018 IPR009506 Protein of unknown function DUF1127 Y89_2558 aae3ecac58980cd091fff7c460598df1 424 Pfam PF07690 Major Facilitator Superfamily 32 321 2.0E-27 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2558 aae3ecac58980cd091fff7c460598df1 424 SUPERFAMILY SSF103473 2 413 2.09E-51 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2558 aae3ecac58980cd091fff7c460598df1 424 Gene3D G3DSA:1.20.1250.20 224 415 2.5E-20 T 31-10-2018 Y89_2558 aae3ecac58980cd091fff7c460598df1 424 Gene3D G3DSA:1.20.1250.20 17 209 1.4E-18 T 31-10-2018 Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 182 254 1.2E-30 T 31-10-2018 IPR020012 Motility protein FimV, N-terminal Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 875 918 1.9E-21 T 31-10-2018 IPR020011 Motility protein FimV, C-terminal Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 Gene3D G3DSA:1.25.40.10 547 621 8.9E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 Gene3D G3DSA:3.10.350.10 163 242 1.3E-8 T 31-10-2018 IPR036779 LysM domain superfamily Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 SMART SM00257 175 230 0.0037 T 31-10-2018 IPR018392 LysM domain Y89_1904 f76ab0d8de3d830b7ce54cecfd2d8c35 919 Gene3D G3DSA:1.20.58.2200 857 919 2.5E-28 T 31-10-2018 IPR038440 FimV, C-terminal domain superfamily Y89_5257 cd465d9bd289757131db3d8f1377aadb 212 Gene3D G3DSA:3.40.50.2020 1 208 2.2E-69 T 31-10-2018 Y89_5257 cd465d9bd289757131db3d8f1377aadb 212 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.829 T 31-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y89_5257 cd465d9bd289757131db3d8f1377aadb 212 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 2.5E-88 T 31-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Y89_5257 cd465d9bd289757131db3d8f1377aadb 212 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 6.3E-63 T 31-10-2018 Y89_5257 cd465d9bd289757131db3d8f1377aadb 212 SUPERFAMILY SSF53271 3 206 4.33E-65 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 31-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 PIRSF PIRSF005900 1 156 9.1E-47 T 31-10-2018 IPR002177 DNA-binding protein Dps Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 SUPERFAMILY SSF47240 4 155 7.31E-48 T 31-10-2018 IPR009078 Ferritin-like superfamily Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 ProSitePatterns PS00818 Dps protein family signature 1. 37 53 - T 31-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 6.3E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 6.3E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 6.3E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 Pfam PF00210 Ferritin-like domain 17 155 3.1E-28 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Y89_4393 87366b4bbf4a500df7a09d80abdc4cc0 156 Gene3D G3DSA:1.20.1260.10 1 155 8.9E-58 T 31-10-2018 IPR012347 Ferritin-like Y89_4520 fd6374e625fd5c2e62072eb35a2954bc 370 Gene3D G3DSA:3.20.20.70 5 360 1.8E-107 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4520 fd6374e625fd5c2e62072eb35a2954bc 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 354 8.4E-71 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_4520 fd6374e625fd5c2e62072eb35a2954bc 370 SUPERFAMILY SSF51395 3 357 1.68E-100 T 31-10-2018 Y89_0208 25527ddf6c1c6f388c2e050e20567018 102 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 1.6E-35 T 31-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Y89_4535 a106cc4f9757c9163f3f5d94a23ed9b7 227 Gene3D G3DSA:1.10.443.10 51 221 2.5E-39 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_4535 a106cc4f9757c9163f3f5d94a23ed9b7 227 Pfam PF00589 Phage integrase family 146 205 2.6E-12 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_4535 a106cc4f9757c9163f3f5d94a23ed9b7 227 Pfam PF00589 Phage integrase family 56 132 4.6E-5 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_4535 a106cc4f9757c9163f3f5d94a23ed9b7 227 SUPERFAMILY SSF56349 2 213 2.33E-40 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_1483 5949a3bdd54a07694265fd00fc5db317 490 Gene3D G3DSA:2.40.160.100 33 490 8.2E-226 T 31-10-2018 Y89_1483 5949a3bdd54a07694265fd00fc5db317 490 Pfam PF13372 Alginate export 39 485 2.7E-117 T 31-10-2018 IPR025388 Alginate export domain Y89_5672 dc7d70883ee570b5af727da28db1df4c 318 SUPERFAMILY SSF53756 45 295 1.07E-9 T 31-10-2018 Y89_5672 dc7d70883ee570b5af727da28db1df4c 318 Gene3D G3DSA:3.40.50.2000 34 285 2.2E-6 T 31-10-2018 Y89_5672 dc7d70883ee570b5af727da28db1df4c 318 Pfam PF13524 Glycosyl transferases group 1 212 287 2.4E-8 T 31-10-2018 Y89_2851 a104144d08b81f37f20bf26b38e7cf13 264 Gene3D G3DSA:3.40.190.10 27 244 3.4E-66 T 31-10-2018 Y89_2851 a104144d08b81f37f20bf26b38e7cf13 264 Pfam PF03180 NLPA lipoprotein 26 263 8.9E-75 T 31-10-2018 IPR004872 Lipoprotein NlpA family Y89_2851 a104144d08b81f37f20bf26b38e7cf13 264 Gene3D G3DSA:3.40.190.10 105 210 3.4E-66 T 31-10-2018 Y89_2851 a104144d08b81f37f20bf26b38e7cf13 264 SUPERFAMILY SSF53850 26 263 7.88E-65 T 31-10-2018 Y89_4797 0fc168584125beccf141aa270fe8de1d 333 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 38 315 2.6E-20 T 31-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y89_4797 0fc168584125beccf141aa270fe8de1d 333 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 11 309 1.8E-40 T 31-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Y89_4075 ea099b99bf498d9aa72eb15c8c7e2d01 312 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 312 108.25 T 31-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Y89_4075 ea099b99bf498d9aa72eb15c8c7e2d01 312 Pfam PF03186 CobD/Cbib protein 7 290 7.3E-96 T 31-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Y89_4075 ea099b99bf498d9aa72eb15c8c7e2d01 312 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 8 305 9.4E-58 T 31-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Y89_0429 9377b5f14e9778b1dd041185099f3859 297 Gene3D G3DSA:3.30.1150.10 157 281 1.5E-17 T 31-10-2018 Y89_0429 9377b5f14e9778b1dd041185099f3859 297 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 213 289 2.5E-14 T 31-10-2018 IPR006260 TonB/TolA, C-terminal Y89_0429 9377b5f14e9778b1dd041185099f3859 297 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 211 288 2.9E-16 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 Y89_0429 9377b5f14e9778b1dd041185099f3859 297 SUPERFAMILY SSF74653 107 292 8.5E-20 T 31-10-2018 Y89_5872 1d7aa0016c97f4b9155190634e857e6e 147 Pfam PF03061 Thioesterase superfamily 28 111 7.3E-15 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_5872 1d7aa0016c97f4b9155190634e857e6e 147 SUPERFAMILY SSF54637 9 142 6.79E-39 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_5872 1d7aa0016c97f4b9155190634e857e6e 147 Gene3D G3DSA:3.10.129.10 1 147 8.4E-53 T 31-10-2018 Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 Gene3D G3DSA:2.170.130.10 127 258 3.0E-32 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 151 801 3.4E-121 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 SUPERFAMILY SSF56935 111 802 1.49E-140 T 31-10-2018 Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 SMART SM00965 57 108 5.9E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 Pfam PF00593 TonB dependent receptor 322 801 3.2E-62 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 Gene3D G3DSA:3.55.50.30 27 126 8.9E-20 T 31-10-2018 Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 Pfam PF07715 TonB-dependent Receptor Plug Domain 151 248 2.1E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0491 a4b2ad284dd9b42172f35e8e623d3862 802 Gene3D G3DSA:2.40.170.20 259 802 2.4E-142 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_1265 966c6d556402ef0df116992fed1640fb 105 SUPERFAMILY SSF102705 2 101 4.71E-23 T 31-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Y89_1265 966c6d556402ef0df116992fed1640fb 105 Gene3D G3DSA:3.30.70.120 1 103 2.6E-41 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Y89_5640 ee669fde557f18882398dcc6574f7208 152 Pfam PF06853 Protein of unknown function (DUF1249) 27 145 6.1E-44 T 31-10-2018 IPR009659 Protein of unknown function DUF1249 Y89_5422 798e6e4f687a3eef33912d7c9b772b73 208 Pfam PF01292 Prokaryotic cytochrome b561 7 175 5.6E-21 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_5422 798e6e4f687a3eef33912d7c9b772b73 208 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 5 203 1.2E-60 T 31-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 Y89_5422 798e6e4f687a3eef33912d7c9b772b73 208 Gene3D G3DSA:1.20.950.20 1 208 8.1E-65 T 31-10-2018 Y89_5422 798e6e4f687a3eef33912d7c9b772b73 208 SUPERFAMILY SSF81342 3 206 1.41E-51 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_3253 de3a252d22fbf5870953a47406eb351c 106 Pfam PF10805 Protein of unknown function (DUF2730) 20 94 5.6E-9 T 31-10-2018 IPR020269 Bacteriophage Mu, Gp25 Y89_4608 f5725f82c6c1fb4047e4c17cbb6920be 345 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 184 340 7.2E-38 T 31-10-2018 IPR017516 AbrB duplication Y89_4608 f5725f82c6c1fb4047e4c17cbb6920be 345 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 11 164 2.9E-37 T 31-10-2018 IPR017516 AbrB duplication Y89_4608 f5725f82c6c1fb4047e4c17cbb6920be 345 PIRSF PIRSF038991 3 345 2.8E-68 T 31-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Y89_4608 f5725f82c6c1fb4047e4c17cbb6920be 345 Pfam PF05145 Transition state regulatory protein AbrB 33 340 1.0E-83 T 31-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Y89_1814 5c56ffaa6b88100368b405a0d30e7659 195 Pfam PF04279 Intracellular septation protein A 1 185 1.8E-60 T 31-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Y89_1814 5c56ffaa6b88100368b405a0d30e7659 195 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 187 17.597 T 31-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Y89_1814 5c56ffaa6b88100368b405a0d30e7659 195 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 186 2.2E-52 T 31-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Y89_2780 960e0e5b4de3f00fe6f7c1d1ace1a24a 208 Pfam PF00857 Isochorismatase family 14 164 2.3E-22 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_2780 960e0e5b4de3f00fe6f7c1d1ace1a24a 208 Gene3D G3DSA:3.40.50.850 1 208 1.3E-58 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_2780 960e0e5b4de3f00fe6f7c1d1ace1a24a 208 SUPERFAMILY SSF52499 5 200 1.7E-52 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1090 225b9d440f4f5dbb46f376332a8c602c 653 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 5 490 3.9E-181 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_1090 225b9d440f4f5dbb46f376332a8c602c 653 ProSitePatterns PS01303 BCCT family of transporters signature. 306 315 - T 31-10-2018 IPR018093 BCCT transporter, conserved site Y89_1090 225b9d440f4f5dbb46f376332a8c602c 653 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 43 488 9.1E-156 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_2379 2d81ed0a4250c6cfb8066b29128297ca 361 Pfam PF05359 Domain of Unknown Function (DUF748) 139 275 4.2E-13 T 31-10-2018 IPR008023 Protein of unknown function DUF748 Y89_3119 b276691762de37beffce17b7a56b97bc 312 Pfam PF01904 Protein of unknown function DUF72 24 288 2.6E-67 T 31-10-2018 IPR002763 Protein of unknown function DUF72 Y89_3119 b276691762de37beffce17b7a56b97bc 312 SUPERFAMILY SSF117396 6 291 1.06E-79 T 31-10-2018 IPR036520 UPF0759 superfamily Y89_3119 b276691762de37beffce17b7a56b97bc 312 Gene3D G3DSA:3.20.20.410 2 292 2.6E-66 T 31-10-2018 IPR036520 UPF0759 superfamily Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Gene3D G3DSA:3.40.50.10490 449 596 1.0E-150 T 31-10-2018 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 611 6.2E-258 T 31-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Gene3D G3DSA:3.40.50.10490 250 610 1.0E-150 T 31-10-2018 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Gene3D G3DSA:3.60.20.10 2 241 1.1E-78 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Pfam PF13522 Glutamine amidotransferase domain 67 182 1.9E-20 T 31-10-2018 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 611 40.695 T 31-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Pfam PF01380 SIS domain 291 418 3.4E-33 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 Pfam PF01380 SIS domain 464 593 1.5E-25 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 SUPERFAMILY SSF53697 246 611 4.17E-118 T 31-10-2018 Y89_6289 6ea3d458ed534df444b1ed8827acd75d 611 SUPERFAMILY SSF56235 2 235 2.57E-73 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 SUPERFAMILY SSF46894 148 219 2.07E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 165 218 9.0E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 SMART SM00421 163 220 4.7E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 Gene3D G3DSA:1.10.10.10 103 222 3.7E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 2.3E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 2.3E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_0950 917291a5bd93933aeb4f4ff9244de913 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 2.3E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Y89_6205 3eb38d53fcf68514e9e388d71aaea366 652 Pfam PF13387 Domain of unknown function (DUF4105) 271 441 7.2E-31 T 31-10-2018 IPR025178 Domain of unknown function DUF4105 Y89_1725 3da750b2fd5b7825be15616bc17662d6 373 SUPERFAMILY SSF53901 4 372 1.71E-52 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1725 3da750b2fd5b7825be15616bc17662d6 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 227 1.5E-17 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1725 3da750b2fd5b7825be15616bc17662d6 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 371 7.1E-22 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Y89_1725 3da750b2fd5b7825be15616bc17662d6 373 Gene3D G3DSA:3.40.47.10 218 373 1.9E-41 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_1725 3da750b2fd5b7825be15616bc17662d6 373 Gene3D G3DSA:3.40.47.10 1 214 1.1E-58 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 SMART SM00283 452 713 1.7E-81 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF00672 HAMP domain 384 433 1.1E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 525 681 1.9E-45 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:1.10.287.950 383 714 7.8E-79 T 31-10-2018 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:3.30.450.20 242 342 1.6E-38 T 31-10-2018 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Pfam PF02743 Cache domain 90 333 8.4E-17 T 31-10-2018 IPR033479 Double Cache domain 1 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 SUPERFAMILY SSF58104 405 713 2.88E-82 T 31-10-2018 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 SMART SM00304 383 437 1.1E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Y89_2434 29abd09e4b1928e3d42794b90da766ed 714 Gene3D G3DSA:3.30.450.20 105 241 1.6E-38 T 31-10-2018 Y89_4941 aa9037045a395ff1f8132f3d9898f15a 102 Pfam PF13466 STAS domain 14 94 2.2E-16 T 31-10-2018 IPR002645 STAS domain Y89_4941 aa9037045a395ff1f8132f3d9898f15a 102 SUPERFAMILY SSF52091 7 100 1.9E-16 T 31-10-2018 IPR036513 STAS domain superfamily Y89_4941 aa9037045a395ff1f8132f3d9898f15a 102 Gene3D G3DSA:3.30.750.24 6 102 1.0E-15 T 31-10-2018 IPR036513 STAS domain superfamily Y89_1709 76f7c421a1db88ba5cff2a0e1fd0ad44 391 SUPERFAMILY SSF103473 5 372 5.23E-61 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1709 76f7c421a1db88ba5cff2a0e1fd0ad44 391 Pfam PF07690 Major Facilitator Superfamily 8 317 3.0E-42 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1709 76f7c421a1db88ba5cff2a0e1fd0ad44 391 Gene3D G3DSA:1.20.1250.20 3 374 1.2E-53 T 31-10-2018 Y89_1288 f25508397f24f0b785cce04510ddf003 611 SUPERFAMILY SSF51735 403 491 1.38E-7 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_1288 f25508397f24f0b785cce04510ddf003 611 Gene3D G3DSA:3.40.50.720 401 506 2.2E-9 T 31-10-2018 Y89_1288 f25508397f24f0b785cce04510ddf003 611 Pfam PF02254 TrkA-N domain 403 493 1.5E-5 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Y89_1288 f25508397f24f0b785cce04510ddf003 611 Gene3D G3DSA:1.20.1530.20 3 397 1.0E-13 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_1288 f25508397f24f0b785cce04510ddf003 611 Pfam PF00999 Sodium/hydrogen exchanger family 14 390 1.4E-36 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 SUPERFAMILY SSF50331 235 324 7.37E-8 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 Pfam PF00005 ABC transporter 18 164 5.4E-38 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 SUPERFAMILY SSF52540 3 243 2.18E-88 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 SMART SM00382 27 214 2.9E-20 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 Pfam PF12857 TOBE-like domain 270 321 1.0E-11 T 31-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 6.5E-121 T 31-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 Y89_0298 51811d6172f24c50ea8a31660cd5660a 329 Gene3D G3DSA:3.40.50.300 2 277 6.7E-83 T 31-10-2018 Y89_4855 008ec76c1de50a51d87e86137df8f238 300 Pfam PF12483 E3 Ubiquitin ligase 83 183 7.2E-10 T 31-10-2018 IPR022170 E3 Ubiquitin ligase, GIDE-type GO:0004842|GO:0006996|GO:0016567 MetaCyc: PWY-7511|Reactome: R-HSA-5689880 Y89_4855 008ec76c1de50a51d87e86137df8f238 300 ProSitePatterns PS00018 EF-hand calcium-binding domain. 212 224 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site Y89_6108 5ce35913228bf663ec3773234df416e3 438 Pfam PF00083 Sugar (and other) transporter 27 237 1.6E-20 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_6108 5ce35913228bf663ec3773234df416e3 438 Gene3D G3DSA:1.20.1250.20 19 434 1.1E-56 T 31-10-2018 Y89_6108 5ce35913228bf663ec3773234df416e3 438 SUPERFAMILY SSF103473 7 426 2.09E-60 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3938 89083be731b9b2ae06e984ee82b23439 303 SUPERFAMILY SSF103481 46 144 9.68E-12 T 31-10-2018 Y89_3938 89083be731b9b2ae06e984ee82b23439 303 Pfam PF00892 EamA-like transporter family 156 292 4.0E-21 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3938 89083be731b9b2ae06e984ee82b23439 303 Pfam PF00892 EamA-like transporter family 12 140 2.1E-15 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Y89_3938 89083be731b9b2ae06e984ee82b23439 303 SUPERFAMILY SSF103481 193 295 3.66E-15 T 31-10-2018 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PIRSF PIRSF019404 1 147 1.3E-39 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 141 7.2E-33 T 31-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 5 27 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 64 85 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 109 127 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 87 108 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 45 62 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 PRINTS PR01004 Flagellar FliJ protein signature 127 147 3.6E-13 T 31-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 Y89_4249 e5f03a0f22a8af30637cb2969475f901 147 Pfam PF02050 Flagellar FliJ protein 21 141 1.2E-36 T 31-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Y89_1235 aab417acf9dc182e837974359b2375e6 153 Pfam PF11162 Protein of unknown function (DUF2946) 12 149 2.0E-18 T 31-10-2018 IPR021333 Protein of unknown function DUF2946 Y89_6361 6974440c16bdd844e8517d1c8710324f 145 Gene3D G3DSA:1.10.10.1170 24 107 1.2E-34 T 31-10-2018 Y89_6361 6974440c16bdd844e8517d1c8710324f 145 Gene3D G3DSA:2.40.50.380 108 145 4.7E-23 T 31-10-2018 Y89_6361 6974440c16bdd844e8517d1c8710324f 145 Pfam PF07419 PilM 19 144 1.5E-29 T 31-10-2018 IPR009987 PilM, inner membrane Y89_2805 f4add3758481fab5afa4f670bd21193b 425 Pfam PF00266 Aminotransferase class-V 62 385 1.0E-29 T 31-10-2018 IPR000192 Aminotransferase class V domain Y89_2805 f4add3758481fab5afa4f670bd21193b 425 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 253 273 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Y89_2805 f4add3758481fab5afa4f670bd21193b 425 SUPERFAMILY SSF53383 37 421 5.01E-65 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_2805 f4add3758481fab5afa4f670bd21193b 425 Gene3D G3DSA:3.90.1150.10 51 416 1.5E-69 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_2805 f4add3758481fab5afa4f670bd21193b 425 Gene3D G3DSA:3.40.640.10 63 328 1.5E-69 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_3828 a2092ad6d35974ec6c4578a157ed52cc 569 SUPERFAMILY SSF53474 215 410 5.05E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3828 a2092ad6d35974ec6c4578a157ed52cc 569 SUPERFAMILY SSF53474 50 292 1.59E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0591 d1e00c39ad466d0972ada456a0233978 115 SUPERFAMILY SSF160631 4 108 3.14E-11 T 31-10-2018 Y89_0591 d1e00c39ad466d0972ada456a0233978 115 Gene3D G3DSA:3.40.1580.10 2 111 1.5E-15 T 31-10-2018 IPR037883 Knr4/Smi1-like domain superfamily Y89_0591 d1e00c39ad466d0972ada456a0233978 115 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 4 108 1.0E-5 T 31-10-2018 IPR018958 Knr4/Smi1-like domain Y89_5536 4c11d990bb9696ffbbc0dcfd518cca18 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 99 1.5E-45 T 31-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5536 4c11d990bb9696ffbbc0dcfd518cca18 101 Gene3D G3DSA:2.10.150.10 1 101 1.6E-48 T 31-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5536 4c11d990bb9696ffbbc0dcfd518cca18 101 SUPERFAMILY SSF51278 1 101 1.06E-47 T 31-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5536 4c11d990bb9696ffbbc0dcfd518cca18 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.995 T 31-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_5536 4c11d990bb9696ffbbc0dcfd518cca18 101 Pfam PF00699 Urease beta subunit 3 99 8.5E-46 T 31-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 3.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 3.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 3.0E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 309 1.3E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 SUPERFAMILY SSF55874 298 458 2.1E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 Gene3D G3DSA:1.10.287.130 195 310 2.1E-20 T 31-10-2018 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 SUPERFAMILY SSF47384 227 309 1.0E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 Gene3D G3DSA:3.30.565.10 317 460 3.6E-29 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 SMART SM00387 357 460 1.6E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 SMART SM00388 244 309 1.5E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 Pfam PF08521 Two-component sensor kinase N-terminal 19 167 1.6E-41 T 31-10-2018 IPR013727 Two-component sensor kinase, N-terminal Y89_4602 bd4480b50e2db4faa315c6932b6cd5d9 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 459 8.4E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Y89_5651 d4d632d6c9df6c88b976bbd60eebc161 470 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Y89_5651 d4d632d6c9df6c88b976bbd60eebc161 470 Pfam PF00324 Amino acid permease 18 452 4.1E-116 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Y89_5651 d4d632d6c9df6c88b976bbd60eebc161 470 PIRSF PIRSF006060 1 466 7.6E-71 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5651 d4d632d6c9df6c88b976bbd60eebc161 470 Gene3D G3DSA:1.20.1740.10 10 461 3.8E-63 T 31-10-2018 Y89_5740 220f9db024411c491c35c7a95727a011 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 81 22.946 T 31-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Y89_5740 220f9db024411c491c35c7a95727a011 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 5.8E-22 T 31-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Y89_5740 220f9db024411c491c35c7a95727a011 82 Pfam PF02416 mttA/Hcf106 family 6 52 2.9E-14 T 31-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Y89_3152 42ae743d82fd5d7a119ca37e31a36521 160 Gene3D G3DSA:2.60.40.1090 2 160 3.6E-27 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_3152 42ae743d82fd5d7a119ca37e31a36521 160 SUPERFAMILY SSF49401 5 160 1.14E-24 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_3152 42ae743d82fd5d7a119ca37e31a36521 160 Pfam PF00419 Fimbrial protein 6 159 2.2E-10 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_1254 863f91160d9f8d353be5519e82f6d7b1 385 Gene3D G3DSA:1.20.1250.20 14 383 1.4E-26 T 31-10-2018 Y89_1254 863f91160d9f8d353be5519e82f6d7b1 385 Pfam PF07690 Major Facilitator Superfamily 32 325 1.3E-10 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1254 863f91160d9f8d353be5519e82f6d7b1 385 SUPERFAMILY SSF103473 18 385 9.42E-34 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3447 eb3a71431d192e9156c89172a030c43d 192 Pfam PF13023 HD domain 16 171 9.8E-41 T 31-10-2018 IPR006674 HD domain Y89_3447 eb3a71431d192e9156c89172a030c43d 192 Gene3D G3DSA:1.10.3210.10 3 187 4.2E-45 T 31-10-2018 Y89_3447 eb3a71431d192e9156c89172a030c43d 192 SUPERFAMILY SSF109604 7 179 3.93E-38 T 31-10-2018 Y89_6346 3d3d0f98df7cd710df9f54bd7139eca3 276 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 27 120 1.7E-30 T 31-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family Y89_6346 3d3d0f98df7cd710df9f54bd7139eca3 276 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 31 116 4.7E-28 T 31-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family Y89_5362 6c5dd8b84d8430150a9983173f31848e 259 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 34 47 - T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_5362 6c5dd8b84d8430150a9983173f31848e 259 Pfam PF00809 Pterin binding enzyme 1 240 3.8E-86 T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_5362 6c5dd8b84d8430150a9983173f31848e 259 Gene3D G3DSA:3.20.20.20 1 259 1.8E-107 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_5362 6c5dd8b84d8430150a9983173f31848e 259 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 1 254 2.3E-100 T 31-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Y89_5362 6c5dd8b84d8430150a9983173f31848e 259 SUPERFAMILY SSF51717 1 255 1.7E-101 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 2.3E-7 T 31-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 Gene3D G3DSA:3.40.30.10 1 186 3.9E-57 T 31-10-2018 Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.8E-95 T 31-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 SUPERFAMILY SSF52833 1 186 1.15E-51 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 PIRSF PIRSF000239 1 187 4.7E-45 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_0152 e385d4640b0ebdaae40a0a618361f0a0 187 Pfam PF00578 AhpC/TSA family 4 132 4.5E-30 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_6009 b2d4a516124338e65041349cf53df0ba 329 SUPERFAMILY SSF50129 3 151 1.19E-36 T 31-10-2018 IPR011032 GroES-like superfamily Y89_6009 b2d4a516124338e65041349cf53df0ba 329 Gene3D G3DSA:3.90.180.10 9 325 4.3E-93 T 31-10-2018 Y89_6009 b2d4a516124338e65041349cf53df0ba 329 Pfam PF00107 Zinc-binding dehydrogenase 158 281 7.8E-21 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Y89_6009 b2d4a516124338e65041349cf53df0ba 329 Gene3D G3DSA:3.40.50.720 126 297 4.3E-93 T 31-10-2018 Y89_6009 b2d4a516124338e65041349cf53df0ba 329 SMART SM00829 11 327 6.2E-38 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Y89_6009 b2d4a516124338e65041349cf53df0ba 329 SUPERFAMILY SSF51735 118 283 3.53E-41 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6009 b2d4a516124338e65041349cf53df0ba 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 93 1.6E-10 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Y89_2393 0ae68533ed27187145ec4822bc7b2e1b 108 SUPERFAMILY SSF52833 19 106 7.72E-21 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_2393 0ae68533ed27187145ec4822bc7b2e1b 108 Gene3D G3DSA:3.40.30.10 1 108 2.6E-25 T 31-10-2018 Y89_2393 0ae68533ed27187145ec4822bc7b2e1b 108 Pfam PF00085 Thioredoxin 19 99 3.1E-14 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 Y89_3700 36fde371d5d6ad195a7945bed182bee1 183 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 181 32.608 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y89_3700 36fde371d5d6ad195a7945bed182bee1 183 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 178 2.5E-56 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y89_3700 36fde371d5d6ad195a7945bed182bee1 183 PIRSF PIRSF001296 1 183 1.7E-63 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y89_3700 36fde371d5d6ad195a7945bed182bee1 183 Pfam PF02669 K+-transporting ATPase, c chain 6 178 3.4E-61 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Y89_0344 9cb9d2906fe5bf39ad806852b0976090 262 SUPERFAMILY SSF161098 6 260 1.83E-57 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0344 9cb9d2906fe5bf39ad806852b0976090 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 259 2.9E-16 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0344 9cb9d2906fe5bf39ad806852b0976090 262 Gene3D G3DSA:1.10.3720.10 13 262 9.5E-56 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4001 8d35fb4644a054036f6911b7d9bbf22c 116 Pfam PF03795 YCII-related domain 1 116 8.3E-31 T 31-10-2018 IPR005545 YCII-related Y89_4001 8d35fb4644a054036f6911b7d9bbf22c 116 Gene3D G3DSA:3.30.70.1060 1 116 1.1E-49 T 31-10-2018 Y89_4001 8d35fb4644a054036f6911b7d9bbf22c 116 SUPERFAMILY SSF54909 1 116 1.15E-36 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_4677 a97ff918c6ce60e621281c2f05c3c4af 315 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 29 313 5.7E-131 T 31-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 Y89_4677 a97ff918c6ce60e621281c2f05c3c4af 315 Pfam PF06834 TraU protein 37 303 2.9E-73 T 31-10-2018 IPR009649 TraU Y89_5040 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 4 198 26.733 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y89_5040 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Pfam PF01121 Dephospho-CoA kinase 5 181 1.3E-68 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y89_5040 e8209e4370e6939f0eb7bbfc1ac7ccba 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 6 189 2.8E-52 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Y89_5040 e8209e4370e6939f0eb7bbfc1ac7ccba 203 SUPERFAMILY SSF52540 4 196 1.12E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5040 e8209e4370e6939f0eb7bbfc1ac7ccba 203 Gene3D G3DSA:3.40.50.300 1 200 1.1E-66 T 31-10-2018 Y89_4778 b10295926e2fc621e542de89097d7570 154 Pfam PF07811 TadE-like protein 12 54 3.1E-6 T 31-10-2018 IPR012495 TadE-like Y89_2035 44a86d43502ee9358056b7894be07ffc 177 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 22 163 2.2E-50 T 31-10-2018 IPR018639 Domain of unknown function DUF2062 Y89_4727 fd2617dc5e5cd6aa4abc77bf93abe855 212 Gene3D G3DSA:2.160.10.10 1 212 9.5E-76 T 31-10-2018 Y89_4727 fd2617dc5e5cd6aa4abc77bf93abe855 212 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 145 2.5E-7 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_4727 fd2617dc5e5cd6aa4abc77bf93abe855 212 SUPERFAMILY SSF51161 17 207 5.27E-46 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_4555 bd799276dff3a3ca8aa2ab82052cb36a 107 Pfam PF11804 Protein of unknown function (DUF3325) 2 101 1.4E-30 T 31-10-2018 IPR021762 Protein of unknown function DUF3325 Y89_3284 1d0409ad70f0a1247c424825c7c534fa 236 Pfam PF03591 AzlC protein 20 157 2.9E-36 T 31-10-2018 IPR011606 Branched-chain amino acid transport, permease Y89_0915 b0242926a800d797ba212e72f36afe23 414 Pfam PF11871 Domain of unknown function (DUF3391) 2 125 2.6E-35 T 31-10-2018 IPR021812 Protein of unknown function DUF3391 Y89_0915 b0242926a800d797ba212e72f36afe23 414 Pfam PF01966 HD domain 158 279 2.8E-15 T 31-10-2018 IPR006674 HD domain Y89_0915 b0242926a800d797ba212e72f36afe23 414 SUPERFAMILY SSF109604 151 317 1.24E-33 T 31-10-2018 Y89_0915 b0242926a800d797ba212e72f36afe23 414 Gene3D G3DSA:1.10.3210.10 29 320 2.0E-76 T 31-10-2018 Y89_0915 b0242926a800d797ba212e72f36afe23 414 TIGRFAM TIGR00277 HDIG: HDIG domain 155 246 5.5E-9 T 31-10-2018 IPR006675 HDIG domain Y89_0915 b0242926a800d797ba212e72f36afe23 414 SMART SM00471 153 289 8.9E-12 T 31-10-2018 IPR003607 HD/PDEase domain Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 PIRSF PIRSF026640 1 183 2.5E-62 T 31-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 Gene3D G3DSA:1.20.1250.110 21 184 2.0E-41 T 31-10-2018 Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 27 134 3.3E-38 T 31-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 SUPERFAMILY SSF48600 30 182 3.5E-30 T 31-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 Pfam PF01817 Chorismate mutase type II 31 101 3.0E-8 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_5871 6a317b1a2b8ec99a0db28ea69c367688 185 SMART SM00830 23 103 8.5E-14 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Y89_0305 3df2f6207d4c82364fd3be6fa16df26f 461 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 395 415 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site Y89_0305 3df2f6207d4c82364fd3be6fa16df26f 461 Gene3D G3DSA:1.20.1730.10 21 459 8.8E-75 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_0305 3df2f6207d4c82364fd3be6fa16df26f 461 Pfam PF00474 Sodium:solute symporter family 32 413 1.9E-34 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_5620 0ae02b8079368bc568313bec03d8e287 361 SUPERFAMILY SSF46548 147 265 1.05E-18 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Y89_5620 0ae02b8079368bc568313bec03d8e287 361 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 202 213 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Y89_5620 0ae02b8079368bc568313bec03d8e287 361 Pfam PF08331 Domain of unknown function (DUF1730) 70 148 5.4E-25 T 31-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 Y89_5620 0ae02b8079368bc568313bec03d8e287 361 Pfam PF13484 4Fe-4S double cluster binding domain 201 265 1.6E-19 T 31-10-2018 Y89_5620 0ae02b8079368bc568313bec03d8e287 361 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 15 324 50.2 T 31-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Y89_5620 0ae02b8079368bc568313bec03d8e287 361 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 22 358 2.4E-152 T 31-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Y89_3962 ceea92bc8a07f61bb80dc3a295a889d9 416 Pfam PF13469 Sulfotransferase family 158 383 2.6E-16 T 31-10-2018 Y89_3962 ceea92bc8a07f61bb80dc3a295a889d9 416 SUPERFAMILY SSF52540 156 387 4.89E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3962 ceea92bc8a07f61bb80dc3a295a889d9 416 Gene3D G3DSA:3.40.50.300 95 404 6.5E-22 T 31-10-2018 Y89_5245 fc722838f4533248afced06ee678610b 87 SUPERFAMILY SSF54913 1 68 2.89E-5 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Y89_5245 fc722838f4533248afced06ee678610b 87 Pfam PF09413 Putative prokaryotic signal transducing protein 1 63 1.7E-12 T 31-10-2018 IPR018551 Domain of unknown function DUF2007 Y89_4629 0eae0bd16c8e64c120c5c464a40a06e5 347 Gene3D G3DSA:2.40.440.10 58 178 1.3E-25 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Y89_4629 0eae0bd16c8e64c120c5c464a40a06e5 347 PIRSF PIRSF029342 1 339 1.3E-133 T 31-10-2018 IPR016915 Uncharacterised conserved protein UCP029342 Y89_4629 0eae0bd16c8e64c120c5c464a40a06e5 347 Pfam PF03734 L,D-transpeptidase catalytic domain 59 167 2.1E-18 T 31-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Y89_4629 0eae0bd16c8e64c120c5c464a40a06e5 347 SUPERFAMILY SSF141523 55 166 1.44E-28 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Y89_2255 cd64f24a37389cf917c070a70ca53f79 145 Pfam PF12158 Protein of unknown function (DUF3592) 9 133 1.1E-16 T 31-10-2018 IPR021994 Protein of unknown function DUF3592 Y89_5817 7af0558c9b995fe5b2a1df0b068fcfd4 132 SUPERFAMILY SSF55729 7 125 1.41E-12 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5817 7af0558c9b995fe5b2a1df0b068fcfd4 132 Gene3D G3DSA:3.40.630.30 1 130 7.3E-25 T 31-10-2018 Y89_5817 7af0558c9b995fe5b2a1df0b068fcfd4 132 Pfam PF12568 Acetyltransferase (GNAT) domain 2 122 1.0E-30 T 31-10-2018 IPR000182 GNAT domain Y89_1619 59864d58dae65208fceaa3f72a6578be 137 Gene3D G3DSA:3.10.180.10 7 135 1.0E-28 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1619 59864d58dae65208fceaa3f72a6578be 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 124 1.9E-19 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_1619 59864d58dae65208fceaa3f72a6578be 137 SUPERFAMILY SSF54593 12 130 4.16E-30 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 ProSitePatterns PS00194 Thioredoxin family active site. 122 140 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 SUPERFAMILY SSF52833 96 236 1.16E-36 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 SUPERFAMILY SSF54423 25 86 1.24E-13 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 Pfam PF10411 Disulfide bond isomerase protein N-terminus 29 82 3.8E-18 T 31-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 Pfam PF13098 Thioredoxin-like domain 114 237 9.8E-27 T 31-10-2018 IPR012336 Thioredoxin-like fold Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 Gene3D G3DSA:3.40.30.10 109 241 8.3E-41 T 31-10-2018 Y89_1290 6458846b6e28ed42340cc963a0c4eea0 242 Gene3D G3DSA:3.10.450.70 21 87 8.8E-20 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Y89_6067 efe45d1eac47e10bde945293cd810a61 154 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 16 124 2.2E-26 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y89_6067 efe45d1eac47e10bde945293cd810a61 154 Gene3D G3DSA:3.10.129.10 2 141 6.3E-41 T 31-10-2018 Y89_6067 efe45d1eac47e10bde945293cd810a61 154 SUPERFAMILY SSF54637 7 142 8.01E-45 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_6067 efe45d1eac47e10bde945293cd810a61 154 PIRSF PIRSF003230 2 145 3.4E-28 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Y89_6067 efe45d1eac47e10bde945293cd810a61 154 Pfam PF03061 Thioesterase superfamily 26 110 2.6E-19 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_3566 92028dbd6440d77a504c98110c0e4828 327 Pfam PF14397 Sugar-transfer associated ATP-grasp 20 293 3.3E-103 T 31-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_3566 92028dbd6440d77a504c98110c0e4828 327 SUPERFAMILY SSF56059 40 279 5.5E-19 T 31-10-2018 Y89_3566 92028dbd6440d77a504c98110c0e4828 327 Gene3D G3DSA:3.30.1490.20 40 128 4.8E-5 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Y89_3566 92028dbd6440d77a504c98110c0e4828 327 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 4 323 6.8E-170 T 31-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein Y89_5684 c16e67c2ef6d8e929c1b9fc3c2c70619 345 SUPERFAMILY SSF53756 1 338 8.52E-101 T 31-10-2018 Y89_5684 c16e67c2ef6d8e929c1b9fc3c2c70619 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 318 5.7E-91 T 31-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 Y89_5684 c16e67c2ef6d8e929c1b9fc3c2c70619 345 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 337 2.3E-161 T 31-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 Y89_5684 c16e67c2ef6d8e929c1b9fc3c2c70619 345 Gene3D G3DSA:3.40.50.2000 157 339 3.1E-57 T 31-10-2018 Y89_5684 c16e67c2ef6d8e929c1b9fc3c2c70619 345 Gene3D G3DSA:3.40.50.2000 1 147 7.1E-55 T 31-10-2018 Y89_1450 fa0d7c7ed66ae7083de53031413b67c5 176 SUPERFAMILY SSF81342 2 172 8.63E-29 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_1450 fa0d7c7ed66ae7083de53031413b67c5 176 Pfam PF01292 Prokaryotic cytochrome b561 5 172 6.1E-27 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_0205 da7477925f63f8db6aed02bef51d006e 300 Gene3D G3DSA:3.60.130.10 3 300 2.1E-94 T 31-10-2018 Y89_0205 da7477925f63f8db6aed02bef51d006e 300 SUPERFAMILY SSF51197 13 296 5.49E-89 T 31-10-2018 Y89_0205 da7477925f63f8db6aed02bef51d006e 300 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 280 2.8E-53 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_0889 4f87b0a55f8b3356b9052c454afb6f74 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0889 4f87b0a55f8b3356b9052c454afb6f74 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 463 6.5E-219 T 31-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y89_0889 4f87b0a55f8b3356b9052c454afb6f74 475 SUPERFAMILY SSF81442 10 466 2.62E-119 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0889 4f87b0a55f8b3356b9052c454afb6f74 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 442 1.2E-106 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0889 4f87b0a55f8b3356b9052c454afb6f74 475 Gene3D G3DSA:1.20.210.10 2 475 7.1E-205 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 TIGRFAM TIGR01351 adk: adenylate kinase 2 214 1.5E-77 T 31-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 Hamap MF_00235 Adenylate kinase [adk]. 1 215 53.753 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 31-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 81 97 5.1E-36 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 4 17 5.1E-36 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 32 46 5.1E-36 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 156 171 5.1E-36 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 PRINTS PR00094 Adenylate kinase signature 173 187 5.1E-36 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 Gene3D G3DSA:3.40.50.300 1 215 3.6E-78 T 31-10-2018 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 SUPERFAMILY SSF52540 1 212 1.01E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.2E-16 T 31-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Y89_1340 f0dc0c5191739deb9736065f8027b3d9 215 Pfam PF00406 Adenylate kinase 5 185 1.3E-56 T 31-10-2018 Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 Gene3D G3DSA:3.40.190.10 101 200 4.4E-85 T 31-10-2018 Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 Gene3D G3DSA:1.10.8.450 234 266 4.4E-85 T 31-10-2018 Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 SMART SM00062 25 239 2.2E-4 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 27 305 4.1E-59 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 Gene3D G3DSA:3.40.190.10 26 299 4.4E-85 T 31-10-2018 Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 Pfam PF09084 NMT1/THI5 like 65 188 6.0E-11 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_2493 b677e60e2c4b497bf0658897ff1c5bfb 318 SUPERFAMILY SSF53850 24 243 1.26E-43 T 31-10-2018 Y89_3974 36d82351e4290f1be5fd66d8ec928967 71 Pfam PF01527 Transposase 3 59 4.4E-12 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_3974 36d82351e4290f1be5fd66d8ec928967 71 SUPERFAMILY SSF46689 5 56 5.2E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3974 36d82351e4290f1be5fd66d8ec928967 71 Gene3D G3DSA:1.10.10.60 9 70 2.5E-6 T 31-10-2018 Y89_1749 f6f55c7154631001158f0b8f6d2f67ef 306 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 302 44.984 T 31-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Y89_1749 f6f55c7154631001158f0b8f6d2f67ef 306 Pfam PF04381 Putative exonuclease, RdgC 1 300 1.3E-115 T 31-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Y89_6269 05e9626ce210e91592e8cbccb8a15c3a 585 Gene3D G3DSA:1.20.1530.20 3 386 1.5E-94 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_6269 05e9626ce210e91592e8cbccb8a15c3a 585 Pfam PF00999 Sodium/hydrogen exchanger family 12 376 9.1E-64 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_2073 c6b5ea67267fba6b1c1d0739b2eedca8 142 Gene3D G3DSA:3.30.420.180 1 142 1.2E-52 T 31-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 Y89_2073 c6b5ea67267fba6b1c1d0739b2eedca8 142 SUPERFAMILY SSF159664 4 134 1.31E-35 T 31-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 Y89_2073 c6b5ea67267fba6b1c1d0739b2eedca8 142 Pfam PF01890 Cobalamin synthesis G C-terminus 9 133 3.1E-27 T 31-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Y89_1801 23930ceb8674e973e75a5c5aaf1651e3 214 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 38 198 6.7E-26 T 31-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Y89_1801 23930ceb8674e973e75a5c5aaf1651e3 214 Gene3D G3DSA:3.40.50.10610 27 214 1.7E-58 T 31-10-2018 Y89_1801 23930ceb8674e973e75a5c5aaf1651e3 214 SUPERFAMILY SSF159594 36 205 4.97E-44 T 31-10-2018 Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 SUPERFAMILY SSF50249 3 165 2.78E-61 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 Pfam PF00436 Single-strand binding protein family 5 111 3.9E-43 T 31-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 165 4.9E-62 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 Hamap MF_00984 Single-stranded DNA-binding protein. 5 116 39.463 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 Gene3D G3DSA:2.40.50.140 1 155 2.9E-51 T 31-10-2018 Y89_0790 3bc26d49d732dc3f67de58190a78e8a4 165 PIRSF PIRSF002070 1 159 8.8E-41 T 31-10-2018 Y89_4422 e4ed48786fea3e16b05a3de8c39e40c8 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 179 1.2E-61 T 31-10-2018 IPR018636 Protein of unknown function DUF2058 Y89_2987 9a10de022bdb5d510768ff026a601524 298 Gene3D G3DSA:3.40.190.290 101 292 1.2E-30 T 31-10-2018 Y89_2987 9a10de022bdb5d510768ff026a601524 298 Pfam PF03466 LysR substrate binding domain 99 293 1.0E-28 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_2987 9a10de022bdb5d510768ff026a601524 298 SUPERFAMILY SSF46785 10 122 4.08E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2987 9a10de022bdb5d510768ff026a601524 298 SUPERFAMILY SSF53850 100 293 7.06E-27 T 31-10-2018 Y89_2987 9a10de022bdb5d510768ff026a601524 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 65 2.7E-10 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_2987 9a10de022bdb5d510768ff026a601524 298 Gene3D G3DSA:1.10.10.10 3 100 1.2E-10 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5890 1b1937c4fe334f0624d67aeb1bf17c1d 527 Gene3D G3DSA:3.30.590.20 20 523 1.3E-194 T 31-10-2018 Y89_5890 1b1937c4fe334f0624d67aeb1bf17c1d 527 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 527 229.009 T 31-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_5890 1b1937c4fe334f0624d67aeb1bf17c1d 527 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 517 4.4E-270 T 31-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_5890 1b1937c4fe334f0624d67aeb1bf17c1d 527 SUPERFAMILY SSF55931 8 514 5.56E-196 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_5890 1b1937c4fe334f0624d67aeb1bf17c1d 527 Pfam PF04262 Glutamate-cysteine ligase 10 377 2.9E-169 T 31-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Y89_4726 8c7ebebfc0e0b9dac18338abebe4bb25 259 Pfam PF00563 EAL domain 22 248 3.1E-11 T 31-10-2018 IPR001633 EAL domain Y89_4726 8c7ebebfc0e0b9dac18338abebe4bb25 259 SUPERFAMILY SSF141868 21 252 1.83E-6 T 31-10-2018 IPR035919 EAL domain superfamily Y89_4726 8c7ebebfc0e0b9dac18338abebe4bb25 259 Gene3D G3DSA:3.20.20.450 19 256 3.0E-9 T 31-10-2018 IPR035919 EAL domain superfamily Y89_0514 4e4d3fdcc1c874a19e109b4c17917e38 252 SUPERFAMILY SSF88713 3 249 2.15E-88 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_0514 4e4d3fdcc1c874a19e109b4c17917e38 252 Gene3D G3DSA:3.20.20.370 2 252 5.5E-92 T 31-10-2018 Y89_0514 4e4d3fdcc1c874a19e109b4c17917e38 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 40.793 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_0514 4e4d3fdcc1c874a19e109b4c17917e38 252 Pfam PF03746 LamB/YcsF family 4 242 3.4E-90 T 31-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 Gene3D G3DSA:3.40.30.10 1 145 1.6E-50 T 31-10-2018 Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 Pfam PF00578 AhpC/TSA family 6 135 3.6E-31 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 PIRSF PIRSF000239 1 209 9.9E-79 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 SUPERFAMILY SSF52833 3 209 1.88E-69 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 Gene3D G3DSA:3.30.1020.10 146 210 1.5E-27 T 31-10-2018 Y89_1556 076fa5431409778ee533e8aa9d6055d2 212 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 191 7.5E-12 T 31-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Y89_3913 f2dd7087f753f68679871f1ec5a2f426 562 Gene3D G3DSA:3.30.1120.10 468 549 3.8E-22 T 31-10-2018 Y89_3913 f2dd7087f753f68679871f1ec5a2f426 562 Gene3D G3DSA:3.40.720.10 27 467 3.9E-137 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_3913 f2dd7087f753f68679871f1ec5a2f426 562 Pfam PF00884 Sulfatase 29 440 2.0E-80 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_3913 f2dd7087f753f68679871f1ec5a2f426 562 SUPERFAMILY SSF53649 28 541 1.24E-137 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_2339 1a21afd633399be252819ba58e93bb8e 89 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 11 78 3.1E-11 T 31-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB Y89_2339 1a21afd633399be252819ba58e93bb8e 89 PIRSF PIRSF017854 5 89 1.3E-34 T 31-10-2018 IPR016704 Conjugal transfer, TrbD Y89_1178 135430772ea03bf043700d3ca196c144 180 Pfam PF00857 Isochorismatase family 8 156 7.0E-26 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_1178 135430772ea03bf043700d3ca196c144 180 Gene3D G3DSA:3.40.50.850 2 180 9.8E-49 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1178 135430772ea03bf043700d3ca196c144 180 SUPERFAMILY SSF52499 2 178 3.14E-46 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_2218 35415cd9956167d4ef06a302b862ec5f 259 PIRSF PIRSF006648 2 255 4.3E-23 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2218 35415cd9956167d4ef06a302b862ec5f 259 Pfam PF01061 ABC-2 type transporter 13 221 2.2E-39 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y89_2218 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 61 83 5.6E-9 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2218 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 199 218 5.6E-9 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2218 35415cd9956167d4ef06a302b862ec5f 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 179 198 5.6E-9 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_6073 ea3670cb1c070a22df56a314a17196a5 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.7E-34 T 31-10-2018 IPR013551 Domain of unknown function DUF1732 Y89_6073 ea3670cb1c070a22df56a314a17196a5 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 7.2E-40 T 31-10-2018 IPR013527 YicC-like, N-terminal Y89_6073 ea3670cb1c070a22df56a314a17196a5 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 7.9E-90 T 31-10-2018 IPR005229 Conserved hypothetical protein CHP00255 Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 SUPERFAMILY SSF52540 41 214 1.4E-6 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 269 395 4.8E-27 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 Gene3D G3DSA:1.10.8.60 397 466 9.1E-10 T 31-10-2018 Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 SMART SM00382 265 398 4.4E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 Gene3D G3DSA:3.40.50.300 230 396 2.1E-33 T 31-10-2018 Y89_0730 77249e96229bfecc8fa7abea25fe6bb8 493 SUPERFAMILY SSF52540 234 448 9.46E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3293 c8daf8a5072e01d31281555e6609db4d 99 PIRSF PIRSF037266 1 97 4.2E-45 T 31-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 Y89_3293 c8daf8a5072e01d31281555e6609db4d 99 Pfam PF09904 Winged helix-turn helix 5 94 1.3E-39 T 31-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 Y89_3293 c8daf8a5072e01d31281555e6609db4d 99 SUPERFAMILY SSF46785 9 91 2.87E-6 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3293 c8daf8a5072e01d31281555e6609db4d 99 Gene3D G3DSA:1.10.10.10 1 99 8.7E-39 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4381 af6ee7b70925952f340c508ad234af5b 274 SUPERFAMILY SSF48452 150 265 3.8E-14 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4381 af6ee7b70925952f340c508ad234af5b 274 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 1 273 18.832 T 31-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 Y89_4381 af6ee7b70925952f340c508ad234af5b 274 Gene3D G3DSA:1.25.40.10 154 274 3.9E-30 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_4381 af6ee7b70925952f340c508ad234af5b 274 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 153 270 1.2E-41 T 31-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal Y89_4381 af6ee7b70925952f340c508ad234af5b 274 Pfam PF16331 TolA binding protein trimerisation 61 116 4.4E-12 T 31-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 Y89_4381 af6ee7b70925952f340c508ad234af5b 274 Pfam PF13525 Outer membrane lipoprotein 153 274 6.2E-10 T 31-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Y89_4381 af6ee7b70925952f340c508ad234af5b 274 Gene3D G3DSA:1.20.5.110 56 121 3.2E-6 T 31-10-2018 Y89_4200 15a0544771d100a8b3322d398b68f9c9 184 SMART SM01040 17 131 9.8E-15 T 31-10-2018 IPR003497 BRO N-terminal domain Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 236 250 0.72 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 77 110 0.051 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 114 147 3.9E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 41 75 1.7E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 148 183 5.5E-6 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Pfam PF08238 Sel1 repeat 202 215 120.0 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 Gene3D G3DSA:1.25.40.10 17 268 3.6E-52 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_5002 441273ea6f164eec239e261edeb06b29 271 SMART SM00671 114 147 6.4E-6 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 SMART SM00671 148 183 1.5E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 SMART SM00671 40 75 1.2E-7 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 SMART SM00671 76 111 6.6E-5 T 31-10-2018 IPR006597 Sel1-like repeat Y89_5002 441273ea6f164eec239e261edeb06b29 271 SUPERFAMILY SSF81901 15 251 8.28E-44 T 31-10-2018 Y89_0566 fee813cf183a692b3b35daf27df2a41c 247 SUPERFAMILY SSF56300 1 231 3.04E-24 T 31-10-2018 Y89_0566 fee813cf183a692b3b35daf27df2a41c 247 Pfam PF00149 Calcineurin-like phosphoesterase 1 214 1.0E-9 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_0566 fee813cf183a692b3b35daf27df2a41c 247 Gene3D G3DSA:3.60.21.10 1 232 9.6E-16 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_1394 9d967f9019d28f375d7fc8f41695c385 82 Pfam PF01206 Sulfurtransferase TusA 11 77 2.8E-18 T 31-10-2018 IPR001455 TusA-like domain Y89_1394 9d967f9019d28f375d7fc8f41695c385 82 SUPERFAMILY SSF64307 5 77 3.79E-20 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_1394 9d967f9019d28f375d7fc8f41695c385 82 Gene3D G3DSA:3.30.110.40 7 77 6.5E-23 T 31-10-2018 IPR036868 TusA-like domain superfamily Y89_1170 f7b95fb59c60e6c9d6ff804046208860 104 Gene3D G3DSA:3.40.1440.10 10 99 6.9E-24 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Y89_1170 f7b95fb59c60e6c9d6ff804046208860 104 Pfam PF01541 GIY-YIG catalytic domain 14 84 1.3E-11 T 31-10-2018 IPR000305 GIY-YIG endonuclease Y89_1170 f7b95fb59c60e6c9d6ff804046208860 104 SUPERFAMILY SSF82771 15 83 1.44E-9 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Y89_1609 a195eccf3e3de5067f81a29ccf4dc601 377 Gene3D G3DSA:3.40.1710.10 37 173 4.8E-6 T 31-10-2018 Y89_1609 a195eccf3e3de5067f81a29ccf4dc601 377 Pfam PF12698 ABC-2 family transporter protein 22 361 5.1E-28 T 31-10-2018 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 412 434 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 197 216 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 374 397 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 336 347 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 440 463 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 PRINTS PR01183 Ribonucleotide reductase large chain signature 528 555 2.6E-18 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 Pfam PF02867 Ribonucleotide reductase, barrel domain 122 670 4.0E-141 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Y89_6237 8ac800c0742b374c9577960df005675f 734 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 43 678 8.4E-182 T 31-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Y89_6237 8ac800c0742b374c9577960df005675f 734 SUPERFAMILY SSF51998 35 710 3.36E-177 T 31-10-2018 Y89_6237 8ac800c0742b374c9577960df005675f 734 Gene3D G3DSA:3.20.70.20 30 684 3.9E-160 T 31-10-2018 Y89_2656 84506a83891870d0b5a9a6e9a0067a6e 331 SUPERFAMILY SSF51430 1 312 3.4E-104 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_2656 84506a83891870d0b5a9a6e9a0067a6e 331 Pfam PF00248 Aldo/keto reductase family 16 310 3.4E-81 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_2656 84506a83891870d0b5a9a6e9a0067a6e 331 Gene3D G3DSA:3.20.20.100 1 330 4.2E-124 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 SUPERFAMILY SSF46785 3 85 1.65E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 Gene3D G3DSA:3.40.190.10 166 269 1.2E-51 T 31-10-2018 Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 Gene3D G3DSA:1.10.10.10 5 90 6.4E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 Pfam PF03466 LysR substrate binding domain 90 294 4.9E-33 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 1.2E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 Gene3D G3DSA:3.40.190.10 94 293 1.2E-51 T 31-10-2018 Y89_3594 06adb5a4dd3940205557e9d5d9cc80bb 304 SUPERFAMILY SSF53850 92 294 2.17E-36 T 31-10-2018 Y89_1571 9b6485fc3e7117f762f3df0ab97fea36 185 SUPERFAMILY SSF54909 3 103 1.12E-18 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_5854 03d4bc80449dda9f9db34e748759f23d 210 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 65 184 2.6E-22 T 31-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Y89_1239 390d9c01b9c1f602026a33817c38ecd6 282 Gene3D G3DSA:2.70.70.10 125 282 4.6E-60 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1239 390d9c01b9c1f602026a33817c38ecd6 282 SUPERFAMILY SSF51261 79 277 2.12E-49 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_1239 390d9c01b9c1f602026a33817c38ecd6 282 Gene3D G3DSA:2.60.40.1590 25 124 2.0E-38 T 31-10-2018 Y89_1239 390d9c01b9c1f602026a33817c38ecd6 282 Pfam PF01551 Peptidase family M23 179 273 9.1E-29 T 31-10-2018 IPR016047 Peptidase M23 Y89_1538 8541d9a361557daa6553a515db549709 442 SUPERFAMILY SSF50182 188 255 1.18E-11 T 31-10-2018 IPR010920 LSM domain superfamily Y89_1538 8541d9a361557daa6553a515db549709 442 Pfam PF00924 Mechanosensitive ion channel 146 399 3.5E-44 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Y89_1888 4a0bbaba02a8dfd986aa66cbbdfdf721 215 Pfam PF01081 KDPG and KHG aldolase 10 201 1.6E-68 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1888 4a0bbaba02a8dfd986aa66cbbdfdf721 215 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 207 1.0E-85 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1888 4a0bbaba02a8dfd986aa66cbbdfdf721 215 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 38 47 - T 31-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Y89_1888 4a0bbaba02a8dfd986aa66cbbdfdf721 215 Gene3D G3DSA:3.20.20.70 7 210 1.5E-71 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_1888 4a0bbaba02a8dfd986aa66cbbdfdf721 215 SUPERFAMILY SSF51569 10 208 3.3E-66 T 31-10-2018 Y89_1460 fbacec979a446cd522f9285d4191a52a 97 Gene3D G3DSA:3.30.70.100 1 97 2.0E-40 T 31-10-2018 Y89_1460 fbacec979a446cd522f9285d4191a52a 97 SUPERFAMILY SSF54909 1 95 3.83E-30 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_1460 fbacec979a446cd522f9285d4191a52a 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 79 1.2E-23 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_4183 72091c21c39aaef386ef1c3b7a52902d 244 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 187 2.5E-70 T 31-10-2018 IPR022301 Integral membrane protein YjbE Y89_4183 72091c21c39aaef386ef1c3b7a52902d 244 Pfam PF03741 Integral membrane protein TerC family 16 186 3.8E-44 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y89_6029 b69749103bfb67bb845d91e3afeaee2a 661 ProSitePatterns PS01303 BCCT family of transporters signature. 315 324 - T 31-10-2018 IPR018093 BCCT transporter, conserved site Y89_6029 b69749103bfb67bb845d91e3afeaee2a 661 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 496 4.0E-200 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_6029 b69749103bfb67bb845d91e3afeaee2a 661 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 53 497 2.3E-163 T 31-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Y89_3722 cc930160f0d1fb40ba27ba989fe79151 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 156 5.7E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_3722 cc930160f0d1fb40ba27ba989fe79151 702 Pfam PF00593 TonB dependent receptor 243 660 1.5E-26 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_3722 cc930160f0d1fb40ba27ba989fe79151 702 Gene3D G3DSA:2.170.130.10 31 166 2.1E-27 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_3722 cc930160f0d1fb40ba27ba989fe79151 702 SUPERFAMILY SSF56935 37 664 4.27E-82 T 31-10-2018 Y89_1694 31e4fb52c23b06a7ee3bb9398dad7ac5 277 SUPERFAMILY SSF161098 70 268 1.44E-24 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1694 31e4fb52c23b06a7ee3bb9398dad7ac5 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 274 4.3E-12 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1694 31e4fb52c23b06a7ee3bb9398dad7ac5 277 Gene3D G3DSA:1.10.3720.10 65 276 4.1E-27 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6192 2595d723ab38206874a6582735cc84c0 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 4.6E-6 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_6192 2595d723ab38206874a6582735cc84c0 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 4.6E-6 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_6192 2595d723ab38206874a6582735cc84c0 265 PRINTS PR00164 ABC-2 type transport system membrane protein signature 146 170 4.6E-6 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_6192 2595d723ab38206874a6582735cc84c0 265 Pfam PF01061 ABC-2 type transporter 20 225 8.1E-29 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y89_1440 ef7f2ec25cc70415bae7dae92885fdd3 328 Gene3D G3DSA:3.40.50.1820 28 318 1.7E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1440 ef7f2ec25cc70415bae7dae92885fdd3 328 SUPERFAMILY SSF53474 26 317 9.21E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1440 ef7f2ec25cc70415bae7dae92885fdd3 328 Pfam PF00561 alpha/beta hydrolase fold 49 299 4.3E-18 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_3986 4ccb97ddd60515f54601a5459178bfe5 174 Gene3D G3DSA:1.10.10.10 96 170 9.9E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3986 4ccb97ddd60515f54601a5459178bfe5 174 SUPERFAMILY SSF88946 14 92 4.32E-6 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Y89_3986 4ccb97ddd60515f54601a5459178bfe5 174 SUPERFAMILY SSF88659 105 168 3.27E-14 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Y89_3986 4ccb97ddd60515f54601a5459178bfe5 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 167 1.9E-20 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Y89_3986 4ccb97ddd60515f54601a5459178bfe5 174 Pfam PF08281 Sigma-70, region 4 111 163 8.8E-15 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Y89_0018 ac37c842519adf835e5b69aab92cc304 88 SUPERFAMILY SSF141371 1 86 4.32E-9 T 31-10-2018 Y89_0018 ac37c842519adf835e5b69aab92cc304 88 Gene3D G3DSA:2.40.10.220 1 87 1.4E-9 T 31-10-2018 Y89_0018 ac37c842519adf835e5b69aab92cc304 88 Pfam PF07238 PilZ domain 4 85 1.6E-9 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_0419 95200c2e7a68344b67e480be156cb6a5 382 Gene3D G3DSA:3.40.50.300 101 355 3.1E-87 T 31-10-2018 Y89_0419 95200c2e7a68344b67e480be156cb6a5 382 Gene3D G3DSA:3.30.450.90 1 99 7.8E-31 T 31-10-2018 Y89_0419 95200c2e7a68344b67e480be156cb6a5 382 SUPERFAMILY SSF52540 4 337 3.43E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_0419 95200c2e7a68344b67e480be156cb6a5 382 Pfam PF00437 Type II/IV secretion system protein 112 269 1.7E-35 T 31-10-2018 IPR001482 Type II/IV secretion system protein Y89_0419 95200c2e7a68344b67e480be156cb6a5 382 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 1.8E-135 T 31-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Y89_3764 a09c163b6d690dda818d798d63ec1d0c 381 Pfam PF01513 ATP-NAD kinase 5 367 8.4E-68 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Y89_3764 a09c163b6d690dda818d798d63ec1d0c 381 PIRSF PIRSF016907 2 371 6.0E-146 T 31-10-2018 IPR011386 Putative ATP-NAD kinase Y89_3764 a09c163b6d690dda818d798d63ec1d0c 381 SUPERFAMILY SSF111331 91 174 1.35E-5 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Y89_6207 a95295f5657de90dab318c404176e7f3 314 Gene3D G3DSA:1.20.1530.20 171 313 1.3E-6 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_6207 a95295f5657de90dab318c404176e7f3 314 Pfam PF03547 Membrane transport protein 165 299 5.1E-8 T 31-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Y89_0299 c96f930fd7129c977e11b68f9b359d09 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 280 1.8E-17 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0299 c96f930fd7129c977e11b68f9b359d09 289 Gene3D G3DSA:1.10.3720.10 23 282 4.4E-63 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0299 c96f930fd7129c977e11b68f9b359d09 289 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 22 279 4.7E-122 T 31-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 Y89_0299 c96f930fd7129c977e11b68f9b359d09 289 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 25 276 4.5E-97 T 31-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Y89_0299 c96f930fd7129c977e11b68f9b359d09 289 SUPERFAMILY SSF161098 23 274 2.09E-53 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 Gene3D G3DSA:1.20.1050.10 88 196 5.6E-85 T 31-10-2018 Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 SUPERFAMILY SSF52833 1 84 3.77E-21 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 2.0E-13 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 197 6.7E-11 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 Gene3D G3DSA:3.40.30.10 2 203 5.6E-85 T 31-10-2018 Y89_4322 3aa0ccab2cde426f5e9209579330dd18 213 SUPERFAMILY SSF47616 78 207 7.78E-39 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_3249 6e110cc31c8e5527da4b75c239d61568 524 Pfam PF06074 Protein of unknown function (DUF935) 7 514 5.5E-188 T 31-10-2018 IPR009279 Protein of unknown function DUF935 Y89_3102 6369f3d74099dcc5b75edc360bd907f7 116 Pfam PF11127 Protein of unknown function (DUF2892) 15 70 8.9E-8 T 31-10-2018 IPR021309 Protein of unknown function DUF2892 Y89_4724 5dc1f4674e0a22a867a399061f61d2e2 98 Gene3D G3DSA:3.30.70.100 1 90 4.5E-19 T 31-10-2018 Y89_4724 5dc1f4674e0a22a867a399061f61d2e2 98 SUPERFAMILY SSF54909 3 83 2.02E-17 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_4724 5dc1f4674e0a22a867a399061f61d2e2 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 4.5E-16 T 31-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain Y89_4475 1f7a5d3b3431fa9ef9c8f6945e765644 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 265 3.0E-74 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_4475 1f7a5d3b3431fa9ef9c8f6945e765644 331 Gene3D G3DSA:3.40.190.170 26 327 2.1E-91 T 31-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Y89_4475 1f7a5d3b3431fa9ef9c8f6945e765644 331 PIRSF PIRSF006470 1 329 7.3E-124 T 31-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Y89_4475 1f7a5d3b3431fa9ef9c8f6945e765644 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 313 1.7E-106 T 31-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Y89_4809 989604be29848654d878af3457acc016 119 Pfam PF07238 PilZ domain 5 98 2.9E-5 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_5999 c7de71ab8f766dfeb590d83164ef92f5 374 Gene3D G3DSA:3.20.20.70 4 374 1.6E-134 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_5999 c7de71ab8f766dfeb590d83164ef92f5 374 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 351 1.2E-85 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_5999 c7de71ab8f766dfeb590d83164ef92f5 374 SUPERFAMILY SSF51395 2 373 3.97E-123 T 31-10-2018 Y89_5334 99e2a380ade5573095602c88dc02dfbd 390 Pfam PF00155 Aminotransferase class I and II 33 381 3.8E-54 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_5334 99e2a380ade5573095602c88dc02dfbd 390 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 231 244 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Y89_5334 99e2a380ade5573095602c88dc02dfbd 390 SUPERFAMILY SSF53383 6 387 6.66E-97 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5334 99e2a380ade5573095602c88dc02dfbd 390 Gene3D G3DSA:3.40.640.10 4 388 1.7E-115 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_5746 4db2d126b982d1d33df12921cde75035 244 Pfam PF00005 ABC transporter 22 169 8.4E-38 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Y89_5746 4db2d126b982d1d33df12921cde75035 244 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Y89_5746 4db2d126b982d1d33df12921cde75035 244 PIRSF PIRSF039085 1 244 6.0E-106 T 31-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Y89_5746 4db2d126b982d1d33df12921cde75035 244 Gene3D G3DSA:3.40.50.300 1 244 2.7E-82 T 31-10-2018 Y89_5746 4db2d126b982d1d33df12921cde75035 244 SMART SM00382 30 217 2.5E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5746 4db2d126b982d1d33df12921cde75035 244 SUPERFAMILY SSF52540 1 239 1.06E-82 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 Gene3D G3DSA:1.10.1660.10 1 120 2.4E-36 T 31-10-2018 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.0E-9 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.0E-9 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.0E-9 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 Pfam PF13411 MerR HTH family regulatory protein 1 68 5.6E-22 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 1.8E-56 T 31-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 SUPERFAMILY SSF46955 1 113 3.48E-37 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_1337 ef015ded9b6cd07cb520a788897ad77b 156 SMART SM00422 1 70 4.2E-31 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_3278 6dc069c6f12a27070bc121692eef751e 86 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 3.0E-15 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Y89_3278 6dc069c6f12a27070bc121692eef751e 86 SMART SM01234 1 68 3.1E-48 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Y89_3278 6dc069c6f12a27070bc121692eef751e 86 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 25.888 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Y89_3278 6dc069c6f12a27070bc121692eef751e 86 Pfam PF01809 Haemolytic domain 4 68 5.3E-31 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Y89_3278 6dc069c6f12a27070bc121692eef751e 86 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 74 2.5E-30 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Y89_1494 80d5fdf6347d0133c58bb3867e1d0d88 108 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 1.8E-46 T 31-10-2018 IPR004480 Monothiol glutaredoxin-related Y89_1494 80d5fdf6347d0133c58bb3867e1d0d88 108 Pfam PF00462 Glutaredoxin 16 80 1.5E-18 T 31-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Y89_1494 80d5fdf6347d0133c58bb3867e1d0d88 108 PIRSF PIRSF005894 1 107 1.8E-50 T 31-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 Y89_1494 80d5fdf6347d0133c58bb3867e1d0d88 108 Gene3D G3DSA:3.40.30.10 2 107 1.1E-31 T 31-10-2018 Y89_1494 80d5fdf6347d0133c58bb3867e1d0d88 108 SUPERFAMILY SSF52833 1 103 1.53E-34 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_1806 b200c34d4f3034c31e28acc478d88aed 123 Pfam PF03692 Putative zinc- or iron-chelating domain 6 97 5.6E-12 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y89_2486 cfa3e969cc099d687d8ccc84ba0f1826 201 Gene3D G3DSA:1.20.5.440 1 45 8.9E-27 T 31-10-2018 Y89_2486 cfa3e969cc099d687d8ccc84ba0f1826 201 Gene3D G3DSA:2.60.120.10 46 188 2.5E-62 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_2486 cfa3e969cc099d687d8ccc84ba0f1826 201 SUPERFAMILY SSF51182 9 196 1.03E-54 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_2486 cfa3e969cc099d687d8ccc84ba0f1826 201 Pfam PF05995 Cysteine dioxygenase type I 45 160 6.5E-8 T 31-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 Y89_1764 b2eafd1f8fe16853614f07923564951a 352 SUPERFAMILY SSF53850 36 345 6.73E-52 T 31-10-2018 Y89_1764 b2eafd1f8fe16853614f07923564951a 352 Gene3D G3DSA:3.40.190.10 53 302 1.8E-37 T 31-10-2018 Y89_1764 b2eafd1f8fe16853614f07923564951a 352 Pfam PF13343 Bacterial extracellular solute-binding protein 89 313 1.3E-34 T 31-10-2018 Y89_1764 b2eafd1f8fe16853614f07923564951a 352 Gene3D G3DSA:3.40.190.10 140 256 1.8E-37 T 31-10-2018 Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 SUPERFAMILY SSF51905 13 396 3.56E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 Gene3D G3DSA:3.50.50.60 308 434 3.7E-5 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 182 206 8.0E-7 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 8.0E-7 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 Gene3D G3DSA:3.50.50.60 8 259 1.4E-51 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 Pfam PF13450 NAD(P)-binding Rossmann-like domain 16 73 1.9E-7 T 31-10-2018 Y89_3043 e4304418ddf3591fa39dfeba9c7e4826 508 Pfam PF00743 Flavin-binding monooxygenase-like 85 353 1.2E-12 T 31-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 Y89_5347 ac7bf129d4649f9c13356c82c6332f5e 293 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 42 272 7.8E-57 T 31-10-2018 IPR018713 Domain of unknown function DUF2236 Y89_3980 5b6be62239acbd719bdf37b902985045 168 SUPERFAMILY SSF46785 6 143 3.75E-34 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3980 5b6be62239acbd719bdf37b902985045 168 Gene3D G3DSA:1.10.10.10 1 168 1.3E-54 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_3980 5b6be62239acbd719bdf37b902985045 168 Pfam PF01638 HxlR-like helix-turn-helix 20 105 9.1E-19 T 31-10-2018 IPR002577 Helix-turn-helix, HxlR type Y89_3835 07c4964980d1706293e9224e826bc650 143 SUPERFAMILY SSF143744 2 136 2.22E-34 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_3835 07c4964980d1706293e9224e826bc650 143 Pfam PF03928 Haem-degrading 4 133 8.3E-27 T 31-10-2018 IPR005624 Haem-degrading Y89_3835 07c4964980d1706293e9224e826bc650 143 Gene3D G3DSA:3.30.450.150 1 138 7.4E-34 T 31-10-2018 IPR038084 GlcG-like domain superfamily Y89_0684 a4437e5d7d348d204defd6f98838b8d6 104 ProDom PD069311 TRANSCRIPTIONAL ACTIVATOR PRTN TRANSCRIPTION PYOCIN BIOSYNTHESIS DNA-BINDING BACTERIOCIN REGULATOR REGULATOR 12 97 7.0E-46 T 31-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 Y89_0684 a4437e5d7d348d204defd6f98838b8d6 104 Pfam PF11112 Pyocin activator protein PrtN 16 89 5.5E-29 T 31-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 6.2E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 238 1.1E-57 T 31-10-2018 Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 1.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 1.2E-13 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 Gene3D G3DSA:3.40.50.720 1 241 2.9E-81 T 31-10-2018 Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 SUPERFAMILY SSF51735 10 239 1.49E-72 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0926 b870a7be4457a82c8ccd4a4f05295cd0 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_4614 a1ef6ac19b1bff8428a18e4191c28d1e 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 113 133 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Y89_4614 a1ef6ac19b1bff8428a18e4191c28d1e 272 SUPERFAMILY SSF52096 18 271 1.4E-78 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_4614 a1ef6ac19b1bff8428a18e4191c28d1e 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 27 270 7.8E-53 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Y89_4614 a1ef6ac19b1bff8428a18e4191c28d1e 272 Gene3D G3DSA:3.90.226.10 14 271 2.8E-81 T 31-10-2018 Y89_1707 e9476dd620fab16eaabab386c6f9d741 67 Pfam PF07869 Protein of unknown function (DUF1656) 6 59 2.0E-20 T 31-10-2018 IPR012451 Protein of unknown function DUF1656 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 2.7E-109 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 427 1.3E-201 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_2976 af7b72a9df760aedd77c7630957429fd 427 Pfam PF02040 Arsenical pump membrane protein 4 422 6.9E-150 T 31-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Y89_1262 ed64a248135df5f58b10c1c493f2148d 194 Pfam PF09998 Uncharacterized protein conserved in bacteria (DUF2239) 9 189 9.8E-81 T 31-10-2018 IPR018715 Protein of unknown function DUF2239 Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 Gene3D G3DSA:3.30.450.40 94 263 3.2E-23 T 31-10-2018 IPR029016 GAF-like domain superfamily Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 SMART SM00346 21 111 0.0058 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 SUPERFAMILY SSF46785 21 88 2.52E-9 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 Gene3D G3DSA:1.10.10.10 17 88 3.3E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 Pfam PF01614 Bacterial transcriptional regulator 140 254 6.9E-7 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 Pfam PF09339 IclR helix-turn-helix domain 24 73 5.3E-7 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_2576 154d3c22b4a79a28967d06cc942dc79c 264 SUPERFAMILY SSF55781 98 262 3.53E-24 T 31-10-2018 Y89_3071 c45c1884db3882ea3cd89f80fa694e49 176 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 20 159 1.6E-16 T 31-10-2018 IPR009936 Protein of unknown function DUF1468 Y89_6244 9b337c935c99436850cf4fbe40075df9 225 Gene3D G3DSA:1.10.3720.10 14 224 8.7E-45 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6244 9b337c935c99436850cf4fbe40075df9 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 224 5.9E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_6244 9b337c935c99436850cf4fbe40075df9 225 SUPERFAMILY SSF161098 16 212 8.11E-42 T 31-10-2018 IPR035906 MetI-like superfamily Y89_5582 7e8e5737842ac8c27fbc7562a683bb8b 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 288 2.5E-50 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_1629 1f63197adac2f74fda13b375d42059b2 152 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 11 151 5.1E-54 T 31-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1629 1f63197adac2f74fda13b375d42059b2 152 Pfam PF06754 Phosphonate metabolism protein PhnG 12 150 1.9E-55 T 31-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_5226 465ba4dd670a5bd82f38846568b21c25 191 SUPERFAMILY SSF53448 8 190 4.96E-28 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5226 465ba4dd670a5bd82f38846568b21c25 191 Gene3D G3DSA:3.90.550.10 4 191 2.7E-49 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5226 465ba4dd670a5bd82f38846568b21c25 191 Pfam PF12804 MobA-like NTP transferase domain 9 167 2.0E-36 T 31-10-2018 IPR025877 MobA-like NTP transferase Y89_3690 07052f921eb76033b428f9960c5db06d 202 SUPERFAMILY SSF50475 2 198 6.42E-43 T 31-10-2018 Y89_3690 07052f921eb76033b428f9960c5db06d 202 Pfam PF01613 Flavin reductase like domain 22 165 4.5E-18 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Y89_3690 07052f921eb76033b428f9960c5db06d 202 SMART SM00903 19 174 2.5E-15 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Y89_3690 07052f921eb76033b428f9960c5db06d 202 Gene3D G3DSA:2.30.110.10 1 202 1.4E-61 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Y89_4134 de7e4191e456d8d04826bf04d0e31f63 204 Gene3D G3DSA:3.40.50.1820 1 201 1.6E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4134 de7e4191e456d8d04826bf04d0e31f63 204 SUPERFAMILY SSF53474 2 190 5.13E-24 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4134 de7e4191e456d8d04826bf04d0e31f63 204 Pfam PF12697 Alpha/beta hydrolase family 4 172 6.7E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2696 2df69e5a0ce957da59a94e919f0683fe 171 Pfam PF05163 DinB family 1 170 1.6E-41 T 31-10-2018 IPR007837 DNA damage-inducible protein DinB Y89_2696 2df69e5a0ce957da59a94e919f0683fe 171 SUPERFAMILY SSF109854 15 161 5.49E-21 T 31-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y89_2696 2df69e5a0ce957da59a94e919f0683fe 171 Gene3D G3DSA:1.20.120.450 6 164 1.6E-20 T 31-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Y89_6241 363cf9e9e8db0b7bd8c39d5bff3350d4 262 Pfam PF00950 ABC 3 transport family 2 256 2.3E-78 T 31-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Y89_6241 363cf9e9e8db0b7bd8c39d5bff3350d4 262 SUPERFAMILY SSF81345 3 253 7.72E-40 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_6241 363cf9e9e8db0b7bd8c39d5bff3350d4 262 Gene3D G3DSA:1.10.3470.10 5 261 3.3E-8 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_5369 635a2daa3d6bcdee300298461a88c43e 216 Pfam PF01810 LysE type translocator 17 212 4.9E-57 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_5369 635a2daa3d6bcdee300298461a88c43e 216 PIRSF PIRSF006324 4 215 4.5E-57 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_5369 635a2daa3d6bcdee300298461a88c43e 216 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 23 210 2.0E-64 T 31-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 Y89_2253 7da9f53116169ac14dfff7b9c23c9b04 318 Pfam PF01226 Formate/nitrite transporter 78 310 7.2E-43 T 31-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 Y89_2253 7da9f53116169ac14dfff7b9c23c9b04 318 Gene3D G3DSA:1.20.1080.10 88 315 5.5E-38 T 31-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Y89_0035 c525423ed057be89f772d5bee3257ead 517 SUPERFAMILY SSF52091 426 503 1.37E-13 T 31-10-2018 IPR036513 STAS domain superfamily Y89_0035 c525423ed057be89f772d5bee3257ead 517 Pfam PF13466 STAS domain 451 503 1.4E-7 T 31-10-2018 IPR002645 STAS domain Y89_0035 c525423ed057be89f772d5bee3257ead 517 Pfam PF00916 Sulfate permease family 27 385 5.7E-72 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y89_0035 c525423ed057be89f772d5bee3257ead 517 Gene3D G3DSA:3.30.750.24 415 508 4.4E-16 T 31-10-2018 IPR036513 STAS domain superfamily Y89_5586 d24b93efef5ae130d4a834392501f041 231 Gene3D G3DSA:3.90.79.10 2 139 2.3E-26 T 31-10-2018 Y89_5586 d24b93efef5ae130d4a834392501f041 231 Gene3D G3DSA:1.10.10.10 148 229 2.6E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5586 d24b93efef5ae130d4a834392501f041 231 SUPERFAMILY SSF55811 9 144 7.07E-22 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_5586 d24b93efef5ae130d4a834392501f041 231 SUPERFAMILY SSF46785 151 217 2.58E-7 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3300 f71259af124856b134300181d16a2dca 453 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 423 2.8E-132 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 PIRSF PIRSF000124 1 442 3.2E-143 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 PIRSF PIRSF500134 1 445 4.3E-178 T 31-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Y89_3300 f71259af124856b134300181d16a2dca 453 SUPERFAMILY SSF48179 204 301 1.05E-31 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Y89_3300 f71259af124856b134300181d16a2dca 453 SUPERFAMILY SSF51735 1 195 2.19E-55 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3300 f71259af124856b134300181d16a2dca 453 SMART SM00984 320 427 3.6E-46 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 Gene3D G3DSA:3.40.50.720 235 453 3.4E-75 T 31-10-2018 Y89_3300 f71259af124856b134300181d16a2dca 453 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 6.3E-37 T 31-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 Gene3D G3DSA:3.40.50.720 1 202 5.1E-76 T 31-10-2018 Y89_3300 f71259af124856b134300181d16a2dca 453 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 5.9E-61 T 31-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 SUPERFAMILY SSF52413 312 437 2.62E-36 T 31-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Y89_3300 f71259af124856b134300181d16a2dca 453 Gene3D G3DSA:1.20.5.100 204 232 3.0E-15 T 31-10-2018 Y89_3300 f71259af124856b134300181d16a2dca 453 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 426 5.9E-29 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 Pfam PF01145 SPFH domain / Band 7 family 25 200 1.7E-29 T 31-10-2018 IPR001107 Band 7 domain Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 PIRSF PIRSF005651 1 289 6.5E-94 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 161 179 5.7E-8 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 28 50 5.7E-8 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 180 201 5.7E-8 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 PRINTS PR00721 Stomatin signature 115 132 5.7E-8 T 31-10-2018 IPR001972 Stomatin family GO:0016020 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 Gene3D G3DSA:3.30.479.30 50 187 2.5E-25 T 31-10-2018 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 SMART SM00244 21 185 4.4E-38 T 31-10-2018 IPR001107 Band 7 domain Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 TIGRFAM TIGR01932 hflC: HflC protein 154 285 1.4E-45 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 TIGRFAM TIGR01932 hflC: HflC protein 7 157 6.8E-40 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Y89_5611 d6764fabb7c470a2657fca56f37e95a0 289 SUPERFAMILY SSF117892 53 192 7.45E-28 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_6355 895c7354f9d0aa4f130df974955cedad 177 TIGRFAM TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP 25 135 4.0E-33 T 31-10-2018 IPR022753 Type IV pilus biogenesis PilP Y89_0147 9105289937dbcd9bf80234e13277961c 432 Gene3D G3DSA:3.20.20.140 70 387 1.1E-183 T 31-10-2018 Y89_0147 9105289937dbcd9bf80234e13277961c 432 Pfam PF01979 Amidohydrolase family 67 426 2.6E-64 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_0147 9105289937dbcd9bf80234e13277961c 432 SUPERFAMILY SSF51556 69 372 8.81E-101 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_0147 9105289937dbcd9bf80234e13277961c 432 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 26 425 1.7E-181 T 31-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 Y89_0147 9105289937dbcd9bf80234e13277961c 432 Gene3D G3DSA:2.30.40.10 7 423 1.1E-183 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_0147 9105289937dbcd9bf80234e13277961c 432 SUPERFAMILY SSF51338 23 85 8.02E-7 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 Gene3D G3DSA:1.20.1510.10 11 208 1.8E-56 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 Gene3D G3DSA:3.30.70.1350 209 292 4.4E-25 T 31-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 290 1.9E-65 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 288 1.6E-22 T 31-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 Pfam PF01545 Cation efflux family 17 208 2.2E-37 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 SUPERFAMILY SSF160240 212 289 8.5E-21 T 31-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Y89_1060 8bd22bdee383c835875eb18aa7eb4670 298 SUPERFAMILY SSF161111 9 209 9.29E-53 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 SUPERFAMILY SSF54631 1 119 9.1E-31 T 31-10-2018 Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 Pfam PF00571 CBS domain 67 118 1.8E-6 T 31-10-2018 IPR000644 CBS domain Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 Pfam PF00571 CBS domain 3 53 2.9E-12 T 31-10-2018 IPR000644 CBS domain Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 Gene3D G3DSA:3.10.580.10 1 135 1.5E-33 T 31-10-2018 Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 SMART SM00116 10 57 4.1E-8 T 31-10-2018 IPR000644 CBS domain Y89_3087 5b658feb8204efed23c8c8bddbb5b6e7 137 SMART SM00116 74 122 3.7E-4 T 31-10-2018 IPR000644 CBS domain Y89_2397 c040930cab55704341e44ed8c1810ae4 304 SUPERFAMILY SSF53474 39 293 2.76E-53 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2397 c040930cab55704341e44ed8c1810ae4 304 Gene3D G3DSA:3.40.50.1820 36 301 6.3E-66 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2397 c040930cab55704341e44ed8c1810ae4 304 Pfam PF00756 Putative esterase 62 212 1.5E-12 T 31-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 Y89_4848 f604da507b730f4a14bbac3016b66e7e 352 SUPERFAMILY SSF51735 4 136 7.17E-17 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_4848 f604da507b730f4a14bbac3016b66e7e 352 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 6 123 2.5E-11 T 31-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 Y89_4848 f604da507b730f4a14bbac3016b66e7e 352 Gene3D G3DSA:3.40.50.720 5 149 1.0E-27 T 31-10-2018 Y89_5632 ab47e10d8f92d8234d029d8c99e333a0 178 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 5 166 7.8E-30 T 31-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Y89_0302 9e24c29ec88ddfa43963f5ef4e5e523a 60 Pfam PF10055 Uncharacterized small protein (DUF2292) 17 52 1.2E-17 T 31-10-2018 IPR018743 Protein of unknown function DUF2292 Y89_3076 2072046db6c1de46aceab277d4ac7ff0 238 SUPERFAMILY SSF161098 13 217 2.49E-41 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3076 2072046db6c1de46aceab277d4ac7ff0 238 Gene3D G3DSA:1.10.3720.10 6 234 2.9E-48 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3076 2072046db6c1de46aceab277d4ac7ff0 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 229 1.5E-13 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3076 2072046db6c1de46aceab277d4ac7ff0 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 80 9.9E-20 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_0668 da8ae3f3ab86069882ae6b40f575b7b1 436 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 1 194 2.9E-37 T 31-10-2018 IPR000477 Reverse transcriptase domain Y89_0668 da8ae3f3ab86069882ae6b40f575b7b1 436 SMART SM00507 360 413 3.8E-7 T 31-10-2018 IPR003615 HNH nuclease Y89_0668 da8ae3f3ab86069882ae6b40f575b7b1 436 SUPERFAMILY SSF56672 2 272 4.15E-41 T 31-10-2018 Y89_0668 da8ae3f3ab86069882ae6b40f575b7b1 436 Pfam PF08388 Group II intron, maturase-specific domain 210 288 1.5E-24 T 31-10-2018 IPR013597 Group II intron, maturase-specific Y89_0668 da8ae3f3ab86069882ae6b40f575b7b1 436 Pfam PF01844 HNH endonuclease 372 418 9.5E-12 T 31-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 Y89_3167 f7a01745134213b43c6615601759800f 423 SUPERFAMILY SSF103473 20 422 3.01E-73 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3167 f7a01745134213b43c6615601759800f 423 Gene3D G3DSA:1.20.1250.20 25 423 2.1E-69 T 31-10-2018 Y89_3167 f7a01745134213b43c6615601759800f 423 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_3167 f7a01745134213b43c6615601759800f 423 Pfam PF07690 Major Facilitator Superfamily 35 289 6.0E-31 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4057 66b2bc9a9f310dcff509e0e62fd449a4 353 Pfam PF03088 Strictosidine synthase 147 234 2.2E-30 T 31-10-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 Y89_4057 66b2bc9a9f310dcff509e0e62fd449a4 353 Gene3D G3DSA:2.120.10.30 46 352 8.1E-89 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_4057 66b2bc9a9f310dcff509e0e62fd449a4 353 SUPERFAMILY SSF63829 41 350 5.67E-58 T 31-10-2018 Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 SMART SM00530 14 69 4.4E-11 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 Gene3D G3DSA:2.60.120.10 95 184 6.6E-15 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 SUPERFAMILY SSF51182 55 182 2.03E-25 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 SUPERFAMILY SSF47413 8 73 6.48E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 Pfam PF07883 Cupin domain 115 183 5.6E-15 T 31-10-2018 IPR013096 Cupin 2, conserved barrel Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 Gene3D G3DSA:1.10.260.40 2 76 1.6E-14 T 31-10-2018 Y89_0557 0f1e5688c45cd75bba9f17d6d95756c0 184 Pfam PF01381 Helix-turn-helix 15 69 1.3E-10 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 Pfam PF07715 TonB-dependent Receptor Plug Domain 149 250 3.2E-16 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 Gene3D G3DSA:3.55.50.30 24 104 3.0E-19 T 31-10-2018 Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 Pfam PF00593 TonB dependent receptor 341 801 6.5E-54 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 SUPERFAMILY SSF56935 141 801 1.72E-125 T 31-10-2018 Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 Gene3D G3DSA:2.40.170.20 259 802 2.9E-167 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 151 800 1.3E-108 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 Gene3D G3DSA:2.170.130.10 126 258 4.5E-41 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_0854 2fba885ff13b61f32ace41123df2f0df 802 SMART SM00965 47 97 2.8E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 52 281 4.2E-67 T 31-10-2018 Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 SUPERFAMILY SSF51735 41 284 2.69E-87 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 1.6E-42 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 9.7E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 9.7E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 9.7E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 43 228 0.0072 T 31-10-2018 Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 Gene3D G3DSA:3.40.50.720 2 283 1.2E-95 T 31-10-2018 Y89_3137 ed2ce9434d15b4bb865e4f4eddec3a22 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Y89_5327 16a2f293987aa8ba91438f27db7a9f8d 411 SUPERFAMILY SSF53383 10 394 1.88E-106 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_5327 16a2f293987aa8ba91438f27db7a9f8d 411 Pfam PF00155 Aminotransferase class I and II 37 386 4.9E-59 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_5327 16a2f293987aa8ba91438f27db7a9f8d 411 Gene3D G3DSA:3.90.1150.10 294 392 8.1E-136 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_5327 16a2f293987aa8ba91438f27db7a9f8d 411 Gene3D G3DSA:3.40.640.10 70 293 8.1E-136 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_2148 ea3768f53fb0d37b2e32247a828db85e 317 Pfam PF01882 Protein of unknown function DUF58 213 258 2.1E-11 T 31-10-2018 IPR002881 Domain of unknown function DUF58 Y89_5218 4f143cf42d4913f9e37529ab2b42505a 144 Pfam PF05425 Copper resistance protein D 44 134 6.9E-11 T 31-10-2018 IPR008457 Copper resistance protein D GO:0016021 Y89_5614 5684a283cd8e9ba9a6076879ff3cbce4 82 SUPERFAMILY SSF50182 7 69 2.31E-24 T 31-10-2018 IPR010920 LSM domain superfamily Y89_5614 5684a283cd8e9ba9a6076879ff3cbce4 82 Pfam PF17209 Hfq protein 7 69 1.8E-31 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y89_5614 5684a283cd8e9ba9a6076879ff3cbce4 82 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 64 27.384 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y89_5614 5684a283cd8e9ba9a6076879ff3cbce4 82 Gene3D G3DSA:2.30.30.100 1 82 3.8E-36 T 31-10-2018 Y89_5614 5684a283cd8e9ba9a6076879ff3cbce4 82 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 64 4.1E-30 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Y89_5288 d1b87124edde832625c555cbb4376972 412 Gene3D G3DSA:3.60.60.10 2 308 5.4E-17 T 31-10-2018 Y89_5288 d1b87124edde832625c555cbb4376972 412 Pfam PF03577 Peptidase family C69 11 214 4.0E-8 T 31-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Y89_3609 dcf7965f522a0f31903136125620e687 206 ProDom PD023059 PLASMID TYPE PROTEINS YOP III YSCK VIRULENCE K TRANSLOCATION PSCK 1 206 4.0E-100 T 31-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 Y89_3609 dcf7965f522a0f31903136125620e687 206 Pfam PF06578 YOP proteins translocation protein K (YscK) 3 206 1.4E-91 T 31-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 255 6.0E-83 T 31-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.0E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3891 ac00b8e8855e4f0b050325f1751a47e5 258 Pfam PF01311 Bacterial export proteins, family 1 14 243 6.1E-68 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_2857 0deac7215d0193b40292ec4a63d81d77 187 Pfam PF06252 Protein of unknown function (DUF1018) 20 131 1.7E-20 T 31-10-2018 IPR009363 Bacteriophage Mu, Gp16 Y89_5029 164e0485c37b52cad62a528483759991 334 Pfam PF16754 Bacterial toxin homologue of phage lysozyme, C-term 148 294 2.8E-13 T 31-10-2018 IPR031922 Bacterial toxin homologue of phage lysozyme, C-terminal Y89_5029 164e0485c37b52cad62a528483759991 334 SUPERFAMILY SSF53955 177 318 2.76E-12 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5029 164e0485c37b52cad62a528483759991 334 Gene3D G3DSA:1.10.530.40 141 332 2.4E-19 T 31-10-2018 Y89_3509 58058377c0dba5ccb9e635d11c7e98db 500 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 5 497 6.8E-226 T 31-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 Y89_3509 58058377c0dba5ccb9e635d11c7e98db 500 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 500 318.935 T 31-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 206 5.6E-48 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 SUPERFAMILY SSF53790 2 229 1.27E-68 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 Gene3D G3DSA:3.40.1010.10 1 109 1.5E-30 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 247 4.5E-98 T 31-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Y89_2072 9d021530fea30dd4b081924c10d3cee8 250 Gene3D G3DSA:3.30.950.10 110 229 1.8E-45 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Y89_2508 d652f8349c532cf851538c5336201121 131 Pfam PF12553 Protein of unknown function (DUF3742) 9 107 1.0E-20 T 31-10-2018 IPR022213 Protein of unknown function DUF3742 Y89_3683 d614349d393754799024dcab30124907 398 TIGRFAM TIGR00843 benE: benzoate transporter 18 393 6.8E-129 T 31-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Y89_3683 d614349d393754799024dcab30124907 398 Pfam PF03594 Benzoate membrane transport protein 16 392 4.8E-168 T 31-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Y89_0957 52afac8a39373e03eb4b3514b60bfbfa 118 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 115 2.1E-21 T 31-10-2018 IPR007360 Invasion gene expression up-regulator, SirB Y89_4894 27d5ef9f6b58c3037694b0518cdf7ac6 153 Pfam PF05258 Protein of unknown function (DUF721) 15 96 1.5E-9 T 31-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 Y89_6015 416f7dd7cf15501b75ae1089c805634a 251 Pfam PF13835 Domain of unknown function (DUF4194) 62 226 4.2E-40 T 31-10-2018 IPR025449 Protein of unknown function DUF4194 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 PIRSF PIRSF000071 1 55 8.9E-26 T 31-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 Gene3D G3DSA:2.20.28.10 1 55 1.1E-29 T 31-10-2018 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 SUPERFAMILY SSF57802 1 53 1.26E-22 T 31-10-2018 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 31-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 Pfam PF00301 Rubredoxin 3 49 4.1E-23 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 PRINTS PR00163 Rubredoxin signature 3 19 4.3E-9 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_6088 4d3c99bfef1d234c961d169f8a0ea9a8 55 PRINTS PR00163 Rubredoxin signature 33 49 4.3E-9 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 Y89_6139 5a7f7c1f36127be68d1f3ba81f5f7ebb 257 Gene3D G3DSA:3.40.50.620 5 257 8.4E-41 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_6139 5a7f7c1f36127be68d1f3ba81f5f7ebb 257 SMART SM00893 12 190 2.0E-5 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_6139 5a7f7c1f36127be68d1f3ba81f5f7ebb 257 Pfam PF01012 Electron transfer flavoprotein domain 27 185 1.2E-17 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Y89_6139 5a7f7c1f36127be68d1f3ba81f5f7ebb 257 SUPERFAMILY SSF52402 24 217 1.12E-25 T 31-10-2018 Y89_3246 c339ba717572370ce902c646fe4bd531 369 PIRSF PIRSF016624 1 369 1.4E-75 T 31-10-2018 IPR012106 Protease, Mu phage/prophage I type Y89_3246 c339ba717572370ce902c646fe4bd531 369 Pfam PF10123 Mu-like prophage I protein 31 364 3.0E-104 T 31-10-2018 IPR012106 Protease, Mu phage/prophage I type Y89_5945 2f5f4f856f1048ee8db01a6971a0dd0a 163 Pfam PF02600 Disulfide bond formation protein DsbB 7 157 4.7E-39 T 31-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Y89_5945 2f5f4f856f1048ee8db01a6971a0dd0a 163 SUPERFAMILY SSF158442 10 158 3.01E-38 T 31-10-2018 IPR023380 DsbB-like superfamily Y89_5945 2f5f4f856f1048ee8db01a6971a0dd0a 163 Gene3D G3DSA:1.20.1550.10 2 163 1.0E-46 T 31-10-2018 IPR023380 DsbB-like superfamily Y89_5945 2f5f4f856f1048ee8db01a6971a0dd0a 163 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 2 163 22.314 T 31-10-2018 IPR022920 Disulphide bond formation protein DsbB Y89_3813 07fe6dbe743805e999cffbafc89212da 377 Pfam PF00487 Fatty acid desaturase 115 329 1.2E-26 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_4626 dc6d50942ce0feec4f5cb9742b136a7b 271 Pfam PF16106 Domain of unknown function (DUF4824) 19 265 3.3E-91 T 31-10-2018 IPR032249 Protein of unknown function DUF4824 Y89_5567 010551ee4cec2498687f28027be0738f 417 Gene3D G3DSA:2.40.160.10 35 417 1.3E-161 T 31-10-2018 IPR023614 Porin domain superfamily Y89_5567 010551ee4cec2498687f28027be0738f 417 Pfam PF03573 outer membrane porin, OprD family 31 416 1.3E-148 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_1804 d6995db72aa4799cc26404f0a557c9eb 381 Pfam PF02405 Permease MlaE 165 374 8.2E-67 T 31-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Y89_1804 d6995db72aa4799cc26404f0a557c9eb 381 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 140 376 1.7E-67 T 31-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Y89_2230 937d5361786290e99e0924d5799723ca 99 Pfam PF07238 PilZ domain 10 95 3.2E-13 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_2230 937d5361786290e99e0924d5799723ca 99 Gene3D G3DSA:2.40.10.220 4 99 1.0E-12 T 31-10-2018 Y89_2230 937d5361786290e99e0924d5799723ca 99 SUPERFAMILY SSF141371 6 94 2.35E-16 T 31-10-2018 Y89_4440 d6e3c37b8e85bae1268dc69e5272a4d5 427 SUPERFAMILY SSF53474 220 407 2.99E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4440 d6e3c37b8e85bae1268dc69e5272a4d5 427 PIRSF PIRSF029063 3 426 1.2E-154 T 31-10-2018 IPR011225 Type IV secretory pathway, VirJ component Y89_4440 d6e3c37b8e85bae1268dc69e5272a4d5 427 Pfam PF06057 Bacterial virulence protein (VirJ) 232 421 2.1E-81 T 31-10-2018 IPR010333 Bacterial virulence Y89_4440 d6e3c37b8e85bae1268dc69e5272a4d5 427 Gene3D G3DSA:3.40.50.1820 218 423 1.7E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3634 1a924afcd5c68606b8b171de65b5d7b5 92 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 1 87 5.0E-44 T 31-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA Y89_3634 1a924afcd5c68606b8b171de65b5d7b5 92 SUPERFAMILY SSF140591 2 90 3.73E-29 T 31-10-2018 Y89_3634 1a924afcd5c68606b8b171de65b5d7b5 92 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 4 84 3.1E-21 T 31-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related Y89_3634 1a924afcd5c68606b8b171de65b5d7b5 92 Gene3D G3DSA:1.20.1280.80 1 91 3.9E-31 T 31-10-2018 IPR038347 TyeA superfamily Y89_3634 1a924afcd5c68606b8b171de65b5d7b5 92 Pfam PF09059 TyeA 6 86 2.7E-32 T 31-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA Y89_1593 c208f37acbf593dd1c4a904e87367633 132 Pfam PF10990 Protein of unknown function (DUF2809) 40 122 5.0E-18 T 31-10-2018 IPR021257 Protein of unknown function DUF2809 Y89_5719 1a2c2ca18f35c8d10923cb86a3ec12d1 479 Gene3D G3DSA:3.30.2010.10 54 140 3.8E-7 T 31-10-2018 Y89_5719 1a2c2ca18f35c8d10923cb86a3ec12d1 479 Pfam PF01435 Peptidase family M48 60 249 3.0E-42 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 SUPERFAMILY SSF54292 2 78 7.73E-26 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 Gene3D G3DSA:3.10.20.30 1 74 5.8E-28 T 31-10-2018 IPR012675 Beta-grasp domain superfamily Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 Pfam PF01799 [2Fe-2S] binding domain 73 144 3.7E-25 T 31-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 59 8.2E-9 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 Gene3D G3DSA:1.10.150.120 75 153 1.3E-24 T 31-10-2018 Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 SUPERFAMILY SSF47741 73 151 4.06E-30 T 31-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Y89_3444 164701c37ea6952ef8a6ee31559e9080 153 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Y89_0615 27d162d665886c4c188750445981209d 174 Pfam PF09684 Phage tail protein (Tail_P2_I) 17 152 5.3E-10 T 31-10-2018 IPR006521 Tail protein I Y89_0894 321e1b6d04d3e3a411f0159022cdd8bb 268 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 254 1.3E-128 T 31-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 Y89_0894 321e1b6d04d3e3a411f0159022cdd8bb 268 Gene3D G3DSA:3.20.20.60 2 259 1.1E-91 T 31-10-2018 Y89_0894 321e1b6d04d3e3a411f0159022cdd8bb 268 SUPERFAMILY SSF51621 3 254 2.83E-83 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Y89_0894 321e1b6d04d3e3a411f0159022cdd8bb 268 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 1.1E-61 T 31-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Y89_6301 97969fabd03a4c16b9ea0b0ec88ef3d5 126 Pfam PF03899 ATP synthase I chain 9 105 2.3E-24 T 31-10-2018 IPR005598 ATP synthase protein I Y89_2409 50b2a50c079caf7fb047e0ae2a47da06 267 PIRSF PIRSF006648 4 260 7.8E-15 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2409 50b2a50c079caf7fb047e0ae2a47da06 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 185 204 5.3E-8 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2409 50b2a50c079caf7fb047e0ae2a47da06 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 37 58 5.3E-8 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2409 50b2a50c079caf7fb047e0ae2a47da06 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 205 224 5.3E-8 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Y89_2409 50b2a50c079caf7fb047e0ae2a47da06 267 Pfam PF01061 ABC-2 type transporter 17 228 2.1E-31 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Y89_4681 58705406317ece2ab078ba6ebd4bbdda 120 Pfam PF12553 Protein of unknown function (DUF3742) 1 119 2.7E-46 T 31-10-2018 IPR022213 Protein of unknown function DUF3742 Y89_3070 c1326a6a72826f12b13bd3963a14f085 337 Gene3D G3DSA:3.40.190.10 130 262 1.0E-56 T 31-10-2018 Y89_3070 c1326a6a72826f12b13bd3963a14f085 337 PIRSF PIRSF017082 1 337 3.9E-74 T 31-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Y89_3070 c1326a6a72826f12b13bd3963a14f085 337 Gene3D G3DSA:3.40.190.150 33 325 1.0E-56 T 31-10-2018 Y89_3070 c1326a6a72826f12b13bd3963a14f085 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 332 3.8E-12 T 31-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00412 Epoxide hydrolase signature 91 106 1.8E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00412 Epoxide hydrolase signature 150 163 1.8E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00412 Epoxide hydrolase signature 136 149 1.8E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00412 Epoxide hydrolase signature 71 89 1.8E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00412 Epoxide hydrolase signature 306 328 1.8E-6 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 Gene3D G3DSA:3.40.50.1820 19 332 7.5E-115 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 150 163 1.5E-11 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 1.5E-11 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 106 1.5E-11 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 Pfam PF00561 alpha/beta hydrolase fold 66 317 1.0E-23 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1966 ae1a6841c2f6912a2ba0681f0a897382 333 SUPERFAMILY SSF53474 45 329 3.35E-62 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4808 0e570c88e79ee185e7b1054d2c43033f 443 SUPERFAMILY SSF53300 240 365 1.53E-7 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_4808 0e570c88e79ee185e7b1054d2c43033f 443 Gene3D G3DSA:3.40.50.410 233 393 2.2E-6 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Y89_4808 0e570c88e79ee185e7b1054d2c43033f 443 Pfam PF01882 Protein of unknown function DUF58 199 283 6.2E-23 T 31-10-2018 IPR002881 Domain of unknown function DUF58 Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 SUPERFAMILY SSF48498 81 192 6.82E-26 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 54 6.4E-13 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 Pfam PF16925 Bacterial transcriptional repressor C-terminal 104 187 1.4E-10 T 31-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 SUPERFAMILY SSF46689 2 73 2.1E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3083 4b85f20ebdbc76fe82a7617ff61733b4 194 Gene3D G3DSA:1.10.357.10 1 194 4.8E-85 T 31-10-2018 Y89_2250 957b9469f2d2bac02e5fcd58d96fb23a 114 Gene3D G3DSA:1.10.260.40 1 101 3.7E-25 T 31-10-2018 Y89_2250 957b9469f2d2bac02e5fcd58d96fb23a 114 SUPERFAMILY SSF47413 1 70 6.19E-11 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2250 957b9469f2d2bac02e5fcd58d96fb23a 114 SMART SM00530 5 64 9.3E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_2250 957b9469f2d2bac02e5fcd58d96fb23a 114 Pfam PF13560 Helix-turn-helix domain 2 73 9.1E-8 T 31-10-2018 Y89_1848 eb329103b647644530c987fd8f107b27 921 SUPERFAMILY SSF101904 534 897 3.14E-99 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Y89_1848 eb329103b647644530c987fd8f107b27 921 Gene3D G3DSA:3.30.1360.40 236 334 3.2E-231 T 31-10-2018 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 507 4.5E-153 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_1848 eb329103b647644530c987fd8f107b27 921 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 885 23.894 T 31-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 591 638 1.6E-8 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 837 883 3.7E-12 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 689 732 3.1E-8 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 539 586 1.2E-8 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 788 833 2.1E-12 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 737 781 1.5E-13 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Y89_1848 eb329103b647644530c987fd8f107b27 921 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 638 1.4E-298 T 31-10-2018 Y89_1848 eb329103b647644530c987fd8f107b27 921 Gene3D G3DSA:3.90.199.10 33 522 3.2E-231 T 31-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Y89_1848 eb329103b647644530c987fd8f107b27 921 Gene3D G3DSA:1.10.268.10 371 494 3.2E-231 T 31-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_1848 eb329103b647644530c987fd8f107b27 921 SMART SM00434 11 500 0.0 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Y89_1848 eb329103b647644530c987fd8f107b27 921 SUPERFAMILY SSF56719 30 523 2.22E-184 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Y89_6006 5847fbdd519fb8850cf486bbe755a4d3 121 Pfam PF00665 Integrase core domain 1 69 5.9E-16 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Y89_6006 5847fbdd519fb8850cf486bbe755a4d3 121 Gene3D G3DSA:3.30.420.10 1 101 6.4E-7 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Y89_6006 5847fbdd519fb8850cf486bbe755a4d3 121 SUPERFAMILY SSF53098 1 109 8.47E-24 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_2161 c0ed71fe55abe8229542c94bfb2f28ef 182 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 7 171 5.5E-29 T 31-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Y89_2161 c0ed71fe55abe8229542c94bfb2f28ef 182 Gene3D G3DSA:3.90.1140.10 4 172 3.3E-42 T 31-10-2018 Y89_2161 c0ed71fe55abe8229542c94bfb2f28ef 182 Pfam PF13563 2'-5' RNA ligase superfamily 15 156 1.2E-10 T 31-10-2018 Y89_2161 c0ed71fe55abe8229542c94bfb2f28ef 182 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 6 171 18.705 T 31-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Y89_2161 c0ed71fe55abe8229542c94bfb2f28ef 182 SUPERFAMILY SSF55144 7 173 2.62E-39 T 31-10-2018 IPR009097 Cyclic phosphodiesterase Y89_2771 11a2a67b3f4c001830ce81ea69b1b29d 304 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 49 274 1.2E-116 T 31-10-2018 IPR022488 Polyphosphate kinase-2-related Y89_2771 11a2a67b3f4c001830ce81ea69b1b29d 304 Gene3D G3DSA:3.40.50.300 12 284 2.8E-98 T 31-10-2018 Y89_2771 11a2a67b3f4c001830ce81ea69b1b29d 304 PIRSF PIRSF028756 12 304 5.4E-138 T 31-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 Y89_2771 11a2a67b3f4c001830ce81ea69b1b29d 304 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 49 274 4.5E-116 T 31-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 Y89_2771 11a2a67b3f4c001830ce81ea69b1b29d 304 SUPERFAMILY SSF52540 80 268 3.32E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4989 75675904831308b17845e5695b43157e 336 SUPERFAMILY SSF161098 89 319 1.5E-21 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4989 75675904831308b17845e5695b43157e 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 1.1E-47 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3959 8d043481ffb2f1b8c6e8a45f7beb3781 292 SUPERFAMILY SSF53448 2 178 2.34E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3959 8d043481ffb2f1b8c6e8a45f7beb3781 292 Gene3D G3DSA:3.90.550.10 1 169 2.3E-29 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3959 8d043481ffb2f1b8c6e8a45f7beb3781 292 Pfam PF00535 Glycosyl transferase family 2 3 53 5.9E-11 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_6380 6f863e15c5cfbebc46485548f7c8b479 251 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 45 249 8.7E-89 T 31-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 Y89_5110 6f863e15c5cfbebc46485548f7c8b479 251 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 45 249 8.7E-89 T 31-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 Y89_2443 50059b43a6a948912fea92a729cf202f 166 Gene3D G3DSA:1.20.120.1200 1 161 2.2E-45 T 31-10-2018 Y89_2443 50059b43a6a948912fea92a729cf202f 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 159 5.1E-33 T 31-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Y89_3665 f6728342897b01c729819094c3459d84 1175 Pfam PF14331 ImcF-related N-terminal domain 198 452 9.5E-78 T 31-10-2018 IPR025743 ImcF-related, N-terminal domain Y89_3665 f6728342897b01c729819094c3459d84 1175 SUPERFAMILY SSF52540 117 332 1.16E-9 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3665 f6728342897b01c729819094c3459d84 1175 Pfam PF06744 Type VI secretion protein IcmF C-terminal 923 1123 6.5E-57 T 31-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal Y89_3665 f6728342897b01c729819094c3459d84 1175 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 18 1172 0.0 T 31-10-2018 IPR017731 Type VI secretion system, IcmF Y89_3665 f6728342897b01c729819094c3459d84 1175 Pfam PF06761 Intracellular multiplication and human macrophage-killing 518 792 1.1E-69 T 31-10-2018 IPR009612 ImcF-related Y89_1527 d5a971f4eef2d5501b7f829e0fd984b9 295 SUPERFAMILY SSF53474 8 274 1.08E-40 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1527 d5a971f4eef2d5501b7f829e0fd984b9 295 Gene3D G3DSA:3.40.50.1820 2 266 3.0E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1527 d5a971f4eef2d5501b7f829e0fd984b9 295 Pfam PF00561 alpha/beta hydrolase fold 30 252 6.4E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1343 2953aa57f4ccda3f7068d480836b5a55 288 SUPERFAMILY SSF117396 5 265 1.7E-69 T 31-10-2018 IPR036520 UPF0759 superfamily Y89_1343 2953aa57f4ccda3f7068d480836b5a55 288 Gene3D G3DSA:3.20.20.410 3 267 1.9E-42 T 31-10-2018 IPR036520 UPF0759 superfamily Y89_1343 2953aa57f4ccda3f7068d480836b5a55 288 Pfam PF01904 Protein of unknown function DUF72 23 261 4.2E-52 T 31-10-2018 IPR002763 Protein of unknown function DUF72 Y89_1930 00f82d4eb6a8bea0fb62504fc6fc0d73 321 Pfam PF08907 Domain of unknown function (DUF1853) 17 300 4.6E-94 T 31-10-2018 IPR015003 Protein of unknown function DUF1853 Y89_4821 451b733d2ddde714f5839c50e4d40321 193 Gene3D G3DSA:3.40.50.880 1 193 3.6E-56 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4821 451b733d2ddde714f5839c50e4d40321 193 SUPERFAMILY SSF52317 4 188 4.16E-53 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like Y89_4821 451b733d2ddde714f5839c50e4d40321 193 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 187 5.8E-56 T 31-10-2018 IPR006286 Deglycase PfpI Y89_4821 451b733d2ddde714f5839c50e4d40321 193 Pfam PF01965 DJ-1/PfpI family 4 185 1.9E-50 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Y89_5942 20724fe46a66e4517c9640184e7c8a34 356 ProDom PD032367 ALGINATE REGULATORY ALGR3 ALGP TRANSCRIPTION TRANSCRIPTIONAL DNA-BINDING ACTIVATOR KINASES KINASE 1 123 2.0E-47 T 31-10-2018 Y89_0947 f6cdbee121789dfc376a363580d3fb65 68 SMART SM00530 4 59 9.8E-19 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0947 f6cdbee121789dfc376a363580d3fb65 68 Gene3D G3DSA:1.10.260.40 1 63 5.4E-27 T 31-10-2018 Y89_0947 f6cdbee121789dfc376a363580d3fb65 68 Pfam PF01381 Helix-turn-helix 5 57 7.7E-17 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0947 f6cdbee121789dfc376a363580d3fb65 68 SUPERFAMILY SSF47413 3 64 6.44E-19 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 Gene3D G3DSA:2.170.130.10 28 152 9.1E-39 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 1 615 4.9E-295 T 31-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 147 8.4E-30 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 Pfam PF00593 TonB dependent receptor 185 614 7.6E-48 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 SUPERFAMILY SSF56935 31 613 1.4E-121 T 31-10-2018 Y89_4079 6e4e0f19993b2d7de12a40c58e8bee43 616 Gene3D G3DSA:2.40.170.20 158 614 1.8E-123 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Y89_2893 321e833b6c7a498907670172df2f2f32 171 Pfam PF07030 Protein of unknown function (DUF1320) 4 156 2.2E-26 T 31-10-2018 IPR009752 Bacteriophage Mu, Gp36 Y89_5449 321e833b6c7a498907670172df2f2f32 171 Pfam PF07030 Protein of unknown function (DUF1320) 4 156 2.2E-26 T 31-10-2018 IPR009752 Bacteriophage Mu, Gp36 Y89_3921 1a2a90dc617c7dfbd6d0e8145c2d910f 163 SUPERFAMILY SSF51182 50 145 9.24E-5 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_3591 a71136095dead36f9e59dc4e57215bba 123 Pfam PF13417 Glutathione S-transferase, N-terminal domain 45 121 4.3E-12 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_3591 a71136095dead36f9e59dc4e57215bba 123 SUPERFAMILY SSF52833 43 121 5.46E-19 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3591 a71136095dead36f9e59dc4e57215bba 123 Gene3D G3DSA:3.40.30.10 40 123 4.0E-13 T 31-10-2018 Y89_2547 f07791b378dd307aee311de04f25d4c4 372 Pfam PF14870 Photosynthesis system II assembly factor YCF48 49 131 2.0E-10 T 31-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Y89_2547 f07791b378dd307aee311de04f25d4c4 372 SUPERFAMILY SSF110296 67 325 4.71E-35 T 31-10-2018 Y89_2547 f07791b378dd307aee311de04f25d4c4 372 Gene3D G3DSA:2.130.10.10 170 330 2.0E-7 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_2547 f07791b378dd307aee311de04f25d4c4 372 Gene3D G3DSA:2.130.10.10 42 139 5.6E-7 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_5416 32f3d3775658042b133de4baab33aa58 465 Gene3D G3DSA:1.20.1740.10 3 455 4.4E-47 T 31-10-2018 Y89_5416 32f3d3775658042b133de4baab33aa58 465 PIRSF PIRSF006060 1 458 5.7E-72 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_5416 32f3d3775658042b133de4baab33aa58 465 Pfam PF13520 Amino acid permease 14 435 3.8E-52 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_4930 025ae64b9e8fdbb8e0b897dbbb8f608a 148 Pfam PF06295 Protein of unknown function (DUF1043) 14 131 2.4E-20 T 31-10-2018 IPR009386 Protein of unknown function DUF1043 Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.5E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:3.40.190.10 94 285 8.9E-14 T 31-10-2018 Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:1.10.10.10 1 93 7.7E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 SUPERFAMILY SSF46785 3 88 4.15E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 Gene3D G3DSA:3.40.190.10 176 279 8.9E-14 T 31-10-2018 Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 Pfam PF03466 LysR substrate binding domain 89 303 2.3E-34 T 31-10-2018 IPR005119 LysR, substrate-binding Y89_4542 b9a4e525153d0624e3ed754b29dcd643 317 SUPERFAMILY SSF53850 90 307 2.71E-24 T 31-10-2018 Y89_0550 2899dae332d8d2ade01ccf120dd99963 233 SUPERFAMILY SSF50800 4 225 1.62E-77 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_0550 2899dae332d8d2ade01ccf120dd99963 233 Gene3D G3DSA:2.40.33.20 2 233 5.5E-76 T 31-10-2018 Y89_0550 2899dae332d8d2ade01ccf120dd99963 233 Pfam PF03473 MOSC domain 49 160 2.5E-21 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y89_0550 2899dae332d8d2ade01ccf120dd99963 233 Pfam PF03475 3-alpha domain 171 213 3.5E-15 T 31-10-2018 IPR005163 3-alpha domain Y89_6036 d2887c4f4dfad3fd22b1a7a98f6def17 190 Gene3D G3DSA:3.40.50.2020 3 188 3.8E-53 T 31-10-2018 Y89_6036 d2887c4f4dfad3fd22b1a7a98f6def17 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 188 1.3E-83 T 31-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Y89_6036 d2887c4f4dfad3fd22b1a7a98f6def17 190 SUPERFAMILY SSF53271 2 188 1.08E-45 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like Y89_6036 d2887c4f4dfad3fd22b1a7a98f6def17 190 Pfam PF00156 Phosphoribosyl transferase domain 31 156 5.9E-8 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Y89_6036 d2887c4f4dfad3fd22b1a7a98f6def17 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 41.026 T 31-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Y89_6011 bdd5baa062f6890aa397104fddbf366e 211 SUPERFAMILY SSF56349 23 199 3.34E-6 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_6011 bdd5baa062f6890aa397104fddbf366e 211 Pfam PF12835 Integrase 133 204 6.6E-10 T 31-10-2018 IPR024456 Integrase catalytic domain, putative Y89_1046 fda5ab422866400c12fff1808aa3e162 209 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 6 197 1.4E-60 T 31-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_1046 fda5ab422866400c12fff1808aa3e162 209 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 4 207 24.907 T 31-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_1046 fda5ab422866400c12fff1808aa3e162 209 SUPERFAMILY SSF51391 3 200 1.23E-57 T 31-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_1046 fda5ab422866400c12fff1808aa3e162 209 Pfam PF02581 Thiamine monophosphate synthase 6 186 1.9E-53 T 31-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Y89_1046 fda5ab422866400c12fff1808aa3e162 209 Gene3D G3DSA:3.20.20.70 1 207 4.4E-57 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_4686 f70df6c8833068cf420eabeffbd4e983 971 Pfam PF13700 Domain of unknown function (DUF4158) 13 169 7.9E-24 T 31-10-2018 IPR025296 Domain of unknown function DUF4158 Y89_4686 f70df6c8833068cf420eabeffbd4e983 971 Pfam PF01526 Tn3 transposase DDE domain 564 946 1.6E-115 T 31-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Y89_4865 b2a1b62ca21a8dd5c42f773f679a4587 234 SUPERFAMILY SSF56112 18 187 6.83E-10 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_4865 b2a1b62ca21a8dd5c42f773f679a4587 234 PIRSF PIRSF026326 1 234 4.1E-110 T 31-10-2018 IPR027023 Putative lipopolysaccharide kinase InaA Y89_4865 b2a1b62ca21a8dd5c42f773f679a4587 234 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 18 221 4.2E-74 T 31-10-2018 Y89_5913 ef675eef0df125669f771524fb3fa6d6 69 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 5 69 1.4E-32 T 31-10-2018 IPR012662 Conserved hypothetical protein CHP02449 Y89_0861 6dcf77f1799386032a2d623fa299b810 343 Gene3D G3DSA:1.10.3470.10 17 343 7.6E-82 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_0861 6dcf77f1799386032a2d623fa299b810 343 Pfam PF01032 FecCD transport family 33 339 5.2E-77 T 31-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Y89_0861 6dcf77f1799386032a2d623fa299b810 343 SUPERFAMILY SSF81345 12 339 4.32E-67 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_3563 8b1f490aa3ba253d5ba167e349708427 272 Pfam PF03618 Kinase/pyrophosphorylase 6 262 7.6E-77 T 31-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Y89_3563 8b1f490aa3ba253d5ba167e349708427 272 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 271 77.752 T 31-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein Y89_4754 fd3953901d0d950263a01699392d9d6f 143 Gene3D G3DSA:2.30.30.830 61 128 3.0E-6 T 31-10-2018 Y89_4754 fd3953901d0d950263a01699392d9d6f 143 Pfam PF11356 Type II secretion system protein C 56 124 6.0E-8 T 31-10-2018 IPR024961 Type II secretion system protein C, N-terminal Y89_2457 3bdad92dc65e294eb2ae020afe5975df 141 Pfam PF13673 Acetyltransferase (GNAT) domain 24 138 3.3E-23 T 31-10-2018 IPR000182 GNAT domain Y89_2457 3bdad92dc65e294eb2ae020afe5975df 141 Gene3D G3DSA:3.40.630.30 3 140 1.5E-38 T 31-10-2018 Y89_2457 3bdad92dc65e294eb2ae020afe5975df 141 SUPERFAMILY SSF55729 3 140 3.43E-36 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3286 e6c4b71c974f435717fb5bb86bc6a003 268 Gene3D G3DSA:3.40.50.150 108 257 4.0E-10 T 31-10-2018 Y89_3286 e6c4b71c974f435717fb5bb86bc6a003 268 SUPERFAMILY SSF53335 119 241 2.19E-10 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4693 4491139323046aac672b808e1e2c8d47 172 Pfam PF13523 Acetyltransferase (GNAT) domain 3 149 4.9E-40 T 31-10-2018 Y89_4693 4491139323046aac672b808e1e2c8d47 172 SUPERFAMILY SSF55729 1 163 6.73E-43 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4693 4491139323046aac672b808e1e2c8d47 172 TIGRFAM TIGR04431 N6_acetyl_AAC6: aminoglycoside N(6')-acetyltransferase, AacA4 family 1 171 3.8E-110 T 31-10-2018 IPR030971 Aminoglycoside N(6')-acetyltransferase, AacA4 type Y89_4693 4491139323046aac672b808e1e2c8d47 172 Gene3D G3DSA:3.40.630.30 1 171 4.7E-55 T 31-10-2018 Y89_5962 53e9bf039d8495aa5d373dc10d4af9cd 237 PIRSF PIRSF032817 1 237 3.8E-112 T 31-10-2018 IPR017008 Uncharacterised conserved protein UCP032817 Y89_2707 f640b40b055fc84852c6df9c32018157 126 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 7 78 9.8E-26 T 31-10-2018 IPR025161 Putative transposase IS4/IS5 family Y89_4651 9be1da937cfd40a2d1fc96a3b14e69e2 232 Pfam PF11679 Protein of unknown function (DUF3275) 14 225 7.0E-93 T 31-10-2018 IPR021693 Protein of unknown function DUF3275 Y89_3931 11186501b6ce967fab440f02a65b7c81 463 Gene3D G3DSA:1.20.1730.10 21 461 6.4E-81 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily Y89_3931 11186501b6ce967fab440f02a65b7c81 463 Pfam PF00474 Sodium:solute symporter family 32 416 6.7E-42 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Y89_1573 ec3f41495ef377cf7b07b0c77a220e50 338 Pfam PF01548 Transposase 6 145 3.1E-14 T 31-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Y89_1573 ec3f41495ef377cf7b07b0c77a220e50 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 213 293 1.8E-24 T 31-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Y89_1472 6a4b5f27b434a9e207b1f580b12d3449 295 Pfam PF01522 Polysaccharide deacetylase 15 170 1.0E-13 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Y89_1472 6a4b5f27b434a9e207b1f580b12d3449 295 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 295 65.563 T 31-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 Y89_1472 6a4b5f27b434a9e207b1f580b12d3449 295 SUPERFAMILY SSF88713 14 266 2.78E-30 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_4320 7df39d6c207a5f1d1859a14741887be4 164 Pfam PF03168 Late embryogenesis abundant protein 59 153 9.1E-22 T 31-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup Y89_4320 7df39d6c207a5f1d1859a14741887be4 164 ProDom PD010978 LATE EMBRYOGENESIS ABUNDANT DESICCATION SIMILAR PROTECTANT PROTEINS RELATED EMBRYOGENESIS-ABUNDANT EMBRYOGENESIS-LIKE 32 156 0.002 T 31-10-2018 Y89_4320 7df39d6c207a5f1d1859a14741887be4 164 SMART SM00769 38 157 8.1E-37 T 31-10-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 Y89_4320 7df39d6c207a5f1d1859a14741887be4 164 Gene3D G3DSA:2.60.40.1820 26 156 5.7E-15 T 31-10-2018 Y89_4320 7df39d6c207a5f1d1859a14741887be4 164 SUPERFAMILY SSF117070 19 156 1.12E-31 T 31-10-2018 Y89_5089 c6ee6d7d1baaf77e665751c98184abc1 359 Gene3D G3DSA:1.20.81.30 216 322 1.6E-7 T 31-10-2018 Y89_5089 c6ee6d7d1baaf77e665751c98184abc1 359 Pfam PF00482 Type II secretion system (T2SS), protein F 227 348 2.5E-14 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_5089 c6ee6d7d1baaf77e665751c98184abc1 359 Pfam PF00482 Type II secretion system (T2SS), protein F 25 151 1.0E-16 T 31-10-2018 IPR018076 Type II secretion system F domain Y89_5089 c6ee6d7d1baaf77e665751c98184abc1 359 Gene3D G3DSA:1.20.81.30 11 132 1.7E-23 T 31-10-2018 Y89_1477 d8271356d198452abffaeb37b2936a6c 216 Pfam PF11182 Alginate O-acetyl transferase AlgF 16 194 1.5E-85 T 31-10-2018 IPR035422 Alginate O-acetyl transferase AlgF GO:0042121 Y89_1477 d8271356d198452abffaeb37b2936a6c 216 ProDom PD022759 ALGINATE BIOSYNTHESIS ALGF PRECURSOR SIGNAL PERIPLASMIC TRANSFERASE O-ACETYLTRANSFERASE 13 216 3.0E-113 T 31-10-2018 IPR035422 Alginate O-acetyl transferase AlgF GO:0042121 Y89_2921 1978430a8de32e13375a4a6bfb216812 538 Pfam PF00884 Sulfatase 8 392 7.6E-58 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_2921 1978430a8de32e13375a4a6bfb216812 538 SUPERFAMILY SSF53649 7 502 7.38E-116 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_2921 1978430a8de32e13375a4a6bfb216812 538 Gene3D G3DSA:3.40.720.10 7 508 3.6E-163 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_5754 29045eec34b95bf2d0a0a614f2753231 299 Gene3D G3DSA:3.40.190.10 132 227 2.9E-98 T 31-10-2018 Y89_5754 29045eec34b95bf2d0a0a614f2753231 299 Gene3D G3DSA:3.40.190.10 27 273 2.9E-98 T 31-10-2018 Y89_5754 29045eec34b95bf2d0a0a614f2753231 299 SMART SM00062 37 270 1.7E-65 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5754 29045eec34b95bf2d0a0a614f2753231 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 268 6.6E-51 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_5754 29045eec34b95bf2d0a0a614f2753231 299 SUPERFAMILY SSF53850 1 271 2.93E-66 T 31-10-2018 Y89_0287 c72efab0b1c0fc4c42c689ac355d724f 145 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 76 9.7E-17 T 31-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_0287 c72efab0b1c0fc4c42c689ac355d724f 145 SUPERFAMILY SSF69118 6 145 3.14E-49 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0287 c72efab0b1c0fc4c42c689ac355d724f 145 Gene3D G3DSA:1.20.1290.10 1 145 6.9E-54 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_0287 c72efab0b1c0fc4c42c689ac355d724f 145 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 6.7E-24 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_5960 8993de498dfad04ad14320ed6368f580 77 Pfam PF06146 Phosphate-starvation-inducible E 7 71 3.5E-15 T 31-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like Y89_5960 8993de498dfad04ad14320ed6368f580 77 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 77 1.6E-44 T 31-10-2018 IPR013468 Conserved hypothetical protein CHP02647 Y89_5504 c9fc55ea0817264ae5802f2e15ddc23f 433 SUPERFAMILY SSF51735 10 129 7.88E-5 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5504 c9fc55ea0817264ae5802f2e15ddc23f 433 PIRSF PIRSF029692 5 433 9.6E-193 T 31-10-2018 IPR016935 Staphylopine dehydrogenase Y89_5504 c9fc55ea0817264ae5802f2e15ddc23f 433 Pfam PF10100 Staphylopine dehydrogenase 10 429 3.2E-170 T 31-10-2018 IPR016935 Staphylopine dehydrogenase Y89_3020 b7a2b252abff2783c968bd84b096995f 662 Pfam PF13807 G-rich domain on putative tyrosine kinase 403 479 1.7E-6 T 31-10-2018 IPR032807 Tyrosine kinase, G-rich domain Y89_3020 b7a2b252abff2783c968bd84b096995f 662 Gene3D G3DSA:3.40.50.300 558 649 1.6E-6 T 31-10-2018 Y89_2177 bd4e54abd50ad28df216198593ad747a 402 Pfam PF06224 Winged helix DNA-binding domain 38 379 2.5E-81 T 31-10-2018 IPR009351 Protein of unknown function DUF1006 Y89_0390 ba10126147c184f74c48b1c15af73615 332 Pfam PF00561 alpha/beta hydrolase fold 60 308 2.2E-17 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_0390 ba10126147c184f74c48b1c15af73615 332 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 233 274 - T 31-10-2018 IPR000952 AB hydrolase 4, conserved site Y89_0390 ba10126147c184f74c48b1c15af73615 332 SUPERFAMILY SSF53474 24 310 1.67E-44 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0390 ba10126147c184f74c48b1c15af73615 332 Gene3D G3DSA:3.40.50.1820 31 331 7.0E-28 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0390 ba10126147c184f74c48b1c15af73615 332 PIRSF PIRSF005211 1 332 2.4E-113 T 31-10-2018 IPR012020 AB hydrolase 4 family Y89_4141 c8f9628fb18d6ef318d0f8480136775f 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 89 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_4141 c8f9628fb18d6ef318d0f8480136775f 409 SUPERFAMILY SSF103473 18 395 2.22E-49 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4141 c8f9628fb18d6ef318d0f8480136775f 409 Gene3D G3DSA:1.20.1250.20 16 396 4.6E-43 T 31-10-2018 Y89_4141 c8f9628fb18d6ef318d0f8480136775f 409 Pfam PF07690 Major Facilitator Superfamily 22 356 7.9E-32 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4682 6510104b3657d28975cd0fd1d6b15f14 152 Pfam PF11663 Toxin with endonuclease activity, of toxin-antitoxin system 8 143 1.0E-57 T 31-10-2018 IPR021679 Toxin endonuclease, YhaV GO:0004540|GO:0110001 Y89_4678 36e87a314362030e4e24f9912ceb21c3 464 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 48 457 4.2E-176 T 31-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 Y89_1134 d7b18f6228a636d41f91673eec0835f9 220 Gene3D G3DSA:1.10.3720.10 14 212 1.1E-30 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1134 d7b18f6228a636d41f91673eec0835f9 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 213 6.1E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1134 d7b18f6228a636d41f91673eec0835f9 220 SUPERFAMILY SSF161098 12 203 4.84E-36 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3861 c4b52678a55d1395a5efcbb55f58532a 58 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 6.1E-21 T 31-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Y89_3861 c4b52678a55d1395a5efcbb55f58532a 58 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 8.1E-17 T 31-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Y89_3611 ccc100c46b7b4c2463b269040eab1019 112 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 74 112 9.2E-21 T 31-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 Y89_3611 ccc100c46b7b4c2463b269040eab1019 112 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 26 112 3.8E-27 T 31-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 Y89_4309 d560ce92cdf7a78295ad92defc08cd9f 749 SUPERFAMILY SSF51445 379 706 1.78E-32 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily Y89_4309 d560ce92cdf7a78295ad92defc08cd9f 749 Gene3D G3DSA:3.20.20.80 213 725 5.3E-173 T 31-10-2018 Y89_2968 953dd00b40e57319a99ff97d22cdbc2a 514 Pfam PF01435 Peptidase family M48 281 459 7.2E-13 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_2968 953dd00b40e57319a99ff97d22cdbc2a 514 Gene3D G3DSA:3.30.2010.10 222 316 7.6E-6 T 31-10-2018 Y89_1246 3787b329081565d0c20043276eb36bf8 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 4.9E-102 T 31-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Y89_1246 3787b329081565d0c20043276eb36bf8 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 3.4E-116 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_1246 3787b329081565d0c20043276eb36bf8 426 PIRSF PIRSF006066 1 426 2.8E-140 T 31-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Y89_0885 9d1996d344e1c53c660bec55b3c348fd 418 Gene3D G3DSA:2.40.160.10 32 418 7.7E-174 T 31-10-2018 IPR023614 Porin domain superfamily Y89_0885 9d1996d344e1c53c660bec55b3c348fd 418 Pfam PF03573 outer membrane porin, OprD family 28 416 1.2E-149 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4860 36d41f617db1bb3e4f6e7fe45f41ad57 364 SUPERFAMILY SSF50969 52 347 2.51E-21 T 31-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Y89_4860 36d41f617db1bb3e4f6e7fe45f41ad57 364 Pfam PF07433 Protein of unknown function (DUF1513) 60 363 7.0E-113 T 31-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 Y89_4860 36d41f617db1bb3e4f6e7fe45f41ad57 364 Gene3D G3DSA:2.130.10.10 59 248 3.5E-6 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Y89_4860 36d41f617db1bb3e4f6e7fe45f41ad57 364 PIRSF PIRSF028101 1 364 1.3E-157 T 31-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 Y89_4158 9cf0a3f59bdf9f9eb217900fed8c19ec 254 SUPERFAMILY SSF55909 2 253 1.2E-58 T 31-10-2018 Y89_4158 9cf0a3f59bdf9f9eb217900fed8c19ec 254 Gene3D G3DSA:3.75.10.10 1 254 3.8E-77 T 31-10-2018 Y89_4158 9cf0a3f59bdf9f9eb217900fed8c19ec 254 Pfam PF02274 Amidinotransferase 58 251 1.7E-15 T 31-10-2018 Y89_6020 45bc988af57e4961a94875c3e7a910a0 391 Pfam PF13391 HNH endonuclease 32 99 2.2E-5 T 31-10-2018 IPR003615 HNH nuclease Y89_4292 7cabd47ca163ad7bb1f6a24f89ad6243 173 Pfam PF00583 Acetyltransferase (GNAT) family 14 139 2.0E-17 T 31-10-2018 IPR000182 GNAT domain Y89_4292 7cabd47ca163ad7bb1f6a24f89ad6243 173 Gene3D G3DSA:3.40.630.30 1 166 1.6E-23 T 31-10-2018 Y89_4292 7cabd47ca163ad7bb1f6a24f89ad6243 173 SUPERFAMILY SSF55729 3 162 3.43E-25 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3615 c9b0d5d3a48b4ed896c2c75bf3c8e611 63 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 1 63 5.1E-18 T 31-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 Y89_3615 c9b0d5d3a48b4ed896c2c75bf3c8e611 63 Gene3D G3DSA:1.20.5.420 1 63 3.4E-31 T 31-10-2018 Y89_3615 c9b0d5d3a48b4ed896c2c75bf3c8e611 63 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 1 63 2.5E-20 T 31-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 Y89_6195 daa063141c155905e3d58ee8bf7cf995 304 Gene3D G3DSA:3.90.25.10 167 290 3.2E-76 T 31-10-2018 Y89_6195 daa063141c155905e3d58ee8bf7cf995 304 Gene3D G3DSA:3.40.50.720 6 283 3.2E-76 T 31-10-2018 Y89_6195 daa063141c155905e3d58ee8bf7cf995 304 SUPERFAMILY SSF51735 4 299 4.44E-67 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6195 daa063141c155905e3d58ee8bf7cf995 304 Pfam PF16363 GDP-mannose 4,6 dehydratase 36 291 5.0E-49 T 31-10-2018 IPR016040 NAD(P)-binding domain Y89_3689 fb5856cd480c013d3b446b492a391e4a 135 Gene3D G3DSA:2.30.30.900 20 135 4.4E-52 T 31-10-2018 Y89_3689 fb5856cd480c013d3b446b492a391e4a 135 Pfam PF16985 Domain of unknown function (DUF5086) 5 133 3.3E-61 T 31-10-2018 IPR031561 Protein of unknown function DUF5086 Y89_0966 e2d1337fbc662ce69143340b7a65b5ed 152 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 46 128 4.6E-5 T 31-10-2018 IPR039366 YscW/ExsB Y89_2612 d962daaace5854efbe24890f872285d2 200 Pfam PF00881 Nitroreductase family 9 177 1.9E-20 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Y89_2612 d962daaace5854efbe24890f872285d2 200 Gene3D G3DSA:3.40.109.10 2 200 1.7E-89 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_2612 d962daaace5854efbe24890f872285d2 200 SUPERFAMILY SSF55469 5 199 1.57E-73 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Y89_4162 49f1a2b5f273d47409bc51fe9c754320 197 SUPERFAMILY SSF46565 137 192 1.44E-12 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_4162 49f1a2b5f273d47409bc51fe9c754320 197 SMART SM00271 141 195 0.0048 T 31-10-2018 IPR001623 DnaJ domain Y89_4162 49f1a2b5f273d47409bc51fe9c754320 197 Pfam PF12339 DNA-J related protein 11 134 1.1E-42 T 31-10-2018 IPR021059 DnaJ-related protein, N-terminal Y89_4162 49f1a2b5f273d47409bc51fe9c754320 197 Gene3D G3DSA:1.10.287.110 133 196 2.5E-11 T 31-10-2018 IPR036869 Chaperone J-domain superfamily Y89_5837 4d74538ac8c6219ccfa4e0d59e5b2d2b 90 Pfam PF04606 Ogr/Delta-like zinc finger 5 49 4.0E-14 T 31-10-2018 IPR007684 Zinc finger, Ogr/Delta-type Y89_2382 bb84c6b9683a5c797ef8ecb01fe7af4a 393 Pfam PF05762 VWA domain containing CoxE-like protein 187 272 2.4E-9 T 31-10-2018 IPR008912 Uncharacterised protein family CoxE-like Y89_1541 4532ea4dfb8d133d64bed24ab113429a 571 SUPERFAMILY SSF103473 36 418 5.89E-49 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1541 4532ea4dfb8d133d64bed24ab113429a 571 Gene3D G3DSA:1.20.1250.20 31 418 9.8E-38 T 31-10-2018 Y89_1541 4532ea4dfb8d133d64bed24ab113429a 571 Pfam PF05977 Transmembrane secretion effector 26 543 1.0E-219 T 31-10-2018 IPR010290 Transmembrane secretion effector Y89_4838 6b56a8b00b95a9085393eed10d64efb0 190 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 183 3.9E-34 T 31-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 Y89_4838 6b56a8b00b95a9085393eed10d64efb0 190 PIRSF PIRSF011489 1 190 1.2E-81 T 31-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 Y89_2945 fe4de2ac014d02ede396b424edff1cc6 340 Gene3D G3DSA:3.40.190.10 30 132 3.0E-9 T 31-10-2018 Y89_2945 fe4de2ac014d02ede396b424edff1cc6 340 Gene3D G3DSA:3.40.190.10 146 326 1.7E-17 T 31-10-2018 Y89_2945 fe4de2ac014d02ede396b424edff1cc6 340 SUPERFAMILY SSF53850 35 271 2.72E-30 T 31-10-2018 Y89_2945 fe4de2ac014d02ede396b424edff1cc6 340 Pfam PF13379 NMT1-like family 33 273 7.3E-24 T 31-10-2018 Y89_5020 a786cfd0df809f11546631dc8ed9dc4a 517 Pfam PF12307 Protein of unknown function (DUF3631) 260 440 1.7E-61 T 31-10-2018 IPR022081 Domain of unknown function DUF3631 Y89_1796 3e29310b879bf372de7bbfe5f80d6ea4 270 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 17 231 1.1E-13 T 31-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Y89_1796 3e29310b879bf372de7bbfe5f80d6ea4 270 Gene3D G3DSA:3.60.21.10 14 259 7.4E-21 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_1796 3e29310b879bf372de7bbfe5f80d6ea4 270 SUPERFAMILY SSF56300 15 253 5.7E-33 T 31-10-2018 Y89_5624 8ec716aa5c43448ffb4c63b0f7a903fa 283 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 31-10-2018 IPR000540 Flagellar motor protein MotA, conserved site Y89_5624 8ec716aa5c43448ffb4c63b0f7a903fa 283 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 1.6E-113 T 31-10-2018 IPR022522 Flagellar motor stator, MotA Y89_5624 8ec716aa5c43448ffb4c63b0f7a903fa 283 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 2.9E-9 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_0096 2054e9d6af77025190b52520a4534d65 261 SUPERFAMILY SSF144059 3 258 7.19E-92 T 31-10-2018 Y89_0096 2054e9d6af77025190b52520a4534d65 261 Gene3D G3DSA:1.25.40.10 1 86 1.1E-26 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0096 2054e9d6af77025190b52520a4534d65 261 PIRSF PIRSF029288 1 261 4.4E-103 T 31-10-2018 IPR009211 Predicted virulence protein, SciE type Y89_0096 2054e9d6af77025190b52520a4534d65 261 Pfam PF07024 ImpE protein 139 254 1.4E-43 T 31-10-2018 IPR009211 Predicted virulence protein, SciE type Y89_4133 d8d05ac6d1b692033756eff5c447c885 420 SUPERFAMILY SSF52777 50 207 3.56E-7 T 31-10-2018 Y89_4133 d8d05ac6d1b692033756eff5c447c885 420 Gene3D G3DSA:3.30.559.10 95 235 1.8E-5 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_2914 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 Gene3D G3DSA:1.10.3720.10 2 269 3.9E-51 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2914 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 SUPERFAMILY SSF161098 7 277 3.08E-63 T 31-10-2018 IPR035906 MetI-like superfamily Y89_2914 1cb4c314e3b48cd58d6f4f61d0d23ba6 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 270 5.5E-16 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 Pfam PF00392 Bacterial regulatory proteins, gntR family 33 95 1.1E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 Gene3D G3DSA:3.40.640.10 171 389 2.6E-99 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 SMART SM00345 36 95 9.4E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 Gene3D G3DSA:1.10.10.10 28 98 1.6E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 Gene3D G3DSA:3.90.1150.10 128 494 2.6E-99 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 Pfam PF00155 Aminotransferase class I and II 196 478 6.6E-24 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 SUPERFAMILY SSF53383 127 496 4.81E-90 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Y89_0890 b0b515ac0417977912e260f34b0e1b4e 500 SUPERFAMILY SSF46785 28 98 1.47E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_4469 06c06f9a1d7efe3d662505c32f739074 232 SUPERFAMILY SSF161098 13 215 2.09E-40 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4469 06c06f9a1d7efe3d662505c32f739074 232 Gene3D G3DSA:1.10.3720.10 1 224 1.5E-50 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4469 06c06f9a1d7efe3d662505c32f739074 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 223 1.1E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4469 06c06f9a1d7efe3d662505c32f739074 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 117 5.3E-22 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4704 736c010e8c5c56df94bcdcc42ba1c38c 254 SUPERFAMILY SSF53098 72 192 1.29E-5 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4704 736c010e8c5c56df94bcdcc42ba1c38c 254 Pfam PF13610 DDE domain 73 211 3.9E-50 T 31-10-2018 IPR032874 DDE domain Y89_4710 736c010e8c5c56df94bcdcc42ba1c38c 254 SUPERFAMILY SSF53098 72 192 1.29E-5 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily Y89_4710 736c010e8c5c56df94bcdcc42ba1c38c 254 Pfam PF13610 DDE domain 73 211 3.9E-50 T 31-10-2018 IPR032874 DDE domain Y89_3540 d887f3e2ecea95d89e046b5da5b991fc 240 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 1.1E-8 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Y89_3540 d887f3e2ecea95d89e046b5da5b991fc 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 129.04 T 31-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Y89_3540 d887f3e2ecea95d89e046b5da5b991fc 240 SUPERFAMILY SSF56300 1 224 5.43E-29 T 31-10-2018 Y89_3540 d887f3e2ecea95d89e046b5da5b991fc 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 233 1.5E-114 T 31-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Y89_2150 25ef63431cdf206d7591415cd68cae1c 256 SMART SM00880 11 253 4.3E-41 T 31-10-2018 IPR007899 CHAD domain Y89_2150 25ef63431cdf206d7591415cd68cae1c 256 Pfam PF05235 CHAD domain 23 214 5.1E-27 T 31-10-2018 IPR007899 CHAD domain Y89_2150 25ef63431cdf206d7591415cd68cae1c 256 Gene3D G3DSA:1.40.20.10 4 252 1.6E-25 T 31-10-2018 IPR038186 CHAD domain superfamily Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 Gene3D G3DSA:1.10.630.10 26 442 3.3E-106 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 Pfam PF00067 Cytochrome P450 309 406 5.1E-14 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 SUPERFAMILY SSF48264 32 434 3.41E-73 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 182 197 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 310 321 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 377 386 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 327 354 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 119 130 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 165 181 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 386 397 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_2726 9c7ff4062f7f39afff5c142dd36b279f 444 PRINTS PR00359 B-class P450 signature 355 370 6.1E-38 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_4187 40601a5044529e5d7c0cc073ddd3ef4a 262 Gene3D G3DSA:3.40.50.1820 10 260 3.0E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_4187 40601a5044529e5d7c0cc073ddd3ef4a 262 Pfam PF01738 Dienelactone hydrolase family 46 258 6.4E-46 T 31-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Y89_4187 40601a5044529e5d7c0cc073ddd3ef4a 262 SUPERFAMILY SSF53474 21 258 1.46E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3202 a1e8cb9ab02db783ef2f70bcb3dee7f7 476 PIRSF PIRSF002744 1 465 2.0E-115 T 31-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Y89_3202 a1e8cb9ab02db783ef2f70bcb3dee7f7 476 Gene3D G3DSA:1.10.4160.10 11 461 3.5E-41 T 31-10-2018 IPR038271 Purine-cytosine permease superfamily Y89_3202 a1e8cb9ab02db783ef2f70bcb3dee7f7 476 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 19 440 5.9E-54 T 31-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Y89_1241 09f2f75e54a80e869b589b96ce7c04c6 158 SUPERFAMILY SSF110087 1 146 4.32E-51 T 31-10-2018 IPR036182 Copper chaperone PCuAC superfamily Y89_1241 09f2f75e54a80e869b589b96ce7c04c6 158 Gene3D G3DSA:2.60.40.1890 35 148 1.3E-41 T 31-10-2018 IPR036182 Copper chaperone PCuAC superfamily Y89_1241 09f2f75e54a80e869b589b96ce7c04c6 158 Pfam PF04314 Copper chaperone PCu(A)C 30 138 3.8E-38 T 31-10-2018 IPR007410 Copper chaperone PCuAC Y89_1802 9539e6e3a5c5d5c9b40e153467cdfc05 312 Gene3D G3DSA:1.10.287.950 129 271 1.9E-5 T 31-10-2018 Y89_1802 9539e6e3a5c5d5c9b40e153467cdfc05 312 Pfam PF02470 MlaD protein 39 116 5.0E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_1802 9539e6e3a5c5d5c9b40e153467cdfc05 312 SUPERFAMILY SSF58104 159 295 5.75E-5 T 31-10-2018 Y89_5260 97cb3fb8c48fa3bc954aed888e760ed7 171 Pfam PF05229 Spore Coat Protein U domain 24 168 2.9E-35 T 31-10-2018 IPR007893 Spore coat protein U Y89_5260 97cb3fb8c48fa3bc954aed888e760ed7 171 SMART SM00972 113 168 1.4E-20 T 31-10-2018 IPR007893 Spore coat protein U Y89_3400 1ffc6dd159d7f7a70569e8e11a24c333 269 Gene3D G3DSA:3.40.50.150 9 265 5.9E-28 T 31-10-2018 Y89_3400 1ffc6dd159d7f7a70569e8e11a24c333 269 SUPERFAMILY SSF53335 9 202 2.28E-31 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3400 1ffc6dd159d7f7a70569e8e11a24c333 269 Pfam PF13649 Methyltransferase domain 49 155 3.7E-9 T 31-10-2018 Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 SUPERFAMILY SSF47413 10 74 9.98E-13 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 Gene3D G3DSA:1.10.260.40 10 78 1.2E-22 T 31-10-2018 Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 Pfam PF00717 Peptidase S24-like 159 224 3.8E-11 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 SMART SM00530 15 69 2.0E-14 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 SUPERFAMILY SSF51306 109 243 2.09E-21 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 Pfam PF01381 Helix-turn-helix 16 69 3.2E-11 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_0685 caa3430308d9a13e3279cd0cf11b3066 256 Gene3D G3DSA:2.10.109.10 118 245 2.5E-7 T 31-10-2018 Y89_5023 670e34a8ef24fefd23b465646b6e5f9b 530 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 385 421 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Y89_5023 670e34a8ef24fefd23b465646b6e5f9b 530 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 267 432 2.4E-19 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Y89_5023 670e34a8ef24fefd23b465646b6e5f9b 530 Gene3D G3DSA:3.40.140.10 266 465 1.8E-51 T 31-10-2018 Y89_5023 670e34a8ef24fefd23b465646b6e5f9b 530 SUPERFAMILY SSF53927 267 439 6.45E-27 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Y89_5023 670e34a8ef24fefd23b465646b6e5f9b 530 Gene3D G3DSA:3.40.50.300 42 253 1.8E-19 T 31-10-2018 Y89_4030 416b3018c2b7e3df8e10a412d5b11319 111 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 1.0E-33 T 31-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 Y89_4030 416b3018c2b7e3df8e10a412d5b11319 111 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 21 93 3.9E-17 T 31-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 Gene3D G3DSA:3.30.1330.60 84 226 5.8E-50 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 166 182 8.5E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 121 143 8.5E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 PRINTS PR01021 OMPA domain signature 151 166 8.5E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 SUPERFAMILY SSF103088 108 223 6.67E-40 T 31-10-2018 IPR036737 OmpA-like domain superfamily Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 Pfam PF13488 Glycine zipper 48 90 3.3E-8 T 31-10-2018 IPR039567 Glycine zipper domain Y89_4527 a2f08a9ab69a8b648ca91800100b106b 237 Pfam PF00691 OmpA family 120 215 1.5E-23 T 31-10-2018 IPR006665 OmpA-like domain Y89_0361 ae9ccc4ae63f18c6ecea1ab93637eb4b 267 Pfam PF01925 Sulfite exporter TauE/SafE 7 257 7.0E-57 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_4890 1ac336db0843cfb217dbed25e4747290 211 Gene3D G3DSA:3.40.30.10 6 200 3.9E-56 T 31-10-2018 Y89_4890 1ac336db0843cfb217dbed25e4747290 211 Gene3D G3DSA:1.20.1050.10 84 194 3.9E-56 T 31-10-2018 Y89_4890 1ac336db0843cfb217dbed25e4747290 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 81 2.0E-12 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Y89_4890 1ac336db0843cfb217dbed25e4747290 211 Pfam PF13410 Glutathione S-transferase, C-terminal domain 131 203 2.1E-6 T 31-10-2018 Y89_4890 1ac336db0843cfb217dbed25e4747290 211 SUPERFAMILY SSF47616 84 201 2.52E-13 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Y89_4890 1ac336db0843cfb217dbed25e4747290 211 SUPERFAMILY SSF52833 5 87 1.14E-17 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0564 b472ff8464cbf1db1f45572b9bb45c8f 139 Pfam PF06476 Protein of unknown function (DUF1090) 22 128 1.6E-34 T 31-10-2018 IPR009468 Protein of unknown function DUF1090 Y89_5481 94246805fba38cc8542663bca73eda0f 207 Pfam PF11363 Protein of unknown function (DUF3164) 12 205 1.6E-81 T 31-10-2018 IPR021505 Bacteriophage B3, Orf6 Y89_4119 ec408f58ab868d18162c862f6dec2cb8 167 Gene3D G3DSA:3.40.30.10 1 167 1.0E-69 T 31-10-2018 Y89_4119 ec408f58ab868d18162c862f6dec2cb8 167 Pfam PF14595 Thioredoxin 12 135 3.6E-23 T 31-10-2018 Y89_4119 ec408f58ab868d18162c862f6dec2cb8 167 SUPERFAMILY SSF52833 10 163 9.68E-10 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_3042 cc199309d0ef90e37083a1bc0a14b613 193 SUPERFAMILY SSF46689 5 77 2.62E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_3042 cc199309d0ef90e37083a1bc0a14b613 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 5.6E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_3042 cc199309d0ef90e37083a1bc0a14b613 193 Gene3D G3DSA:1.10.357.10 1 190 1.0E-28 T 31-10-2018 Y89_4876 822b54b4c9e61a63845279b06e6231ef 179 Pfam PF04186 FxsA cytoplasmic membrane protein 31 137 3.2E-34 T 31-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 Y89_2136 9ca3b36e635935ba90b8f6a07c5ef61b 600 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 7 348 9.6E-128 T 31-10-2018 IPR010839 Acyclic terpene utilisation Y89_4745 4912c3282c4528f48ae7d8bbc0fb501f 392 Gene3D G3DSA:3.40.190.10 118 261 1.4E-143 T 31-10-2018 Y89_4745 4912c3282c4528f48ae7d8bbc0fb501f 392 Gene3D G3DSA:3.40.190.260 26 390 1.4E-143 T 31-10-2018 Y89_4745 4912c3282c4528f48ae7d8bbc0fb501f 392 Pfam PF12849 PBP superfamily domain 19 336 3.6E-31 T 31-10-2018 IPR024370 PBP domain Y89_4745 4912c3282c4528f48ae7d8bbc0fb501f 392 SUPERFAMILY SSF53850 25 391 3.26E-70 T 31-10-2018 Y89_1828 939d43e7c5c685bbfaf9dd7996a4d47d 281 SUPERFAMILY SSF161098 13 281 1.78E-61 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1828 939d43e7c5c685bbfaf9dd7996a4d47d 281 Gene3D G3DSA:1.10.3720.10 8 272 3.8E-50 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1828 939d43e7c5c685bbfaf9dd7996a4d47d 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 274 1.6E-13 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_5743 1c487ba5084526922d05365b66a4759c 235 SUPERFAMILY SSF75217 72 234 6.28E-35 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases Y89_5743 1c487ba5084526922d05365b66a4759c 235 PIRSF PIRSF015601 2 235 2.6E-46 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_5743 1c487ba5084526922d05365b66a4759c 235 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 232 1.4E-21 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_5743 1c487ba5084526922d05365b66a4759c 235 Pfam PF04452 RNA methyltransferase 19 234 8.2E-42 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Y89_5743 1c487ba5084526922d05365b66a4759c 235 Gene3D G3DSA:3.40.1280.10 6 235 3.0E-30 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Y89_3303 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:1.10.287.470 99 172 1.0E-95 T 31-10-2018 Y89_3303 24556c689a7ec2f776e49f3791531548 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 375 1.1E-71 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_3303 24556c689a7ec2f776e49f3791531548 396 Pfam PF00529 HlyD membrane-fusion protein of T1SS 40 360 4.7E-12 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Y89_3303 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:2.40.30.170 52 304 1.0E-95 T 31-10-2018 Y89_3303 24556c689a7ec2f776e49f3791531548 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 294 1.5E-10 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Y89_3303 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:2.40.420.20 305 373 1.0E-95 T 31-10-2018 Y89_3303 24556c689a7ec2f776e49f3791531548 396 SUPERFAMILY SSF111369 53 300 4.71E-72 T 31-10-2018 Y89_3303 24556c689a7ec2f776e49f3791531548 396 Gene3D G3DSA:2.40.50.100 64 208 1.0E-95 T 31-10-2018 Y89_2191 f7c732e1d336f9ecb9039a0f994ad9d3 319 Pfam PF01435 Peptidase family M48 105 316 2.3E-37 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_2191 f7c732e1d336f9ecb9039a0f994ad9d3 319 Hamap MF_00188 Protease HtpX [htpX]. 29 317 25.075 T 31-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 Y89_2191 f7c732e1d336f9ecb9039a0f994ad9d3 319 Gene3D G3DSA:3.30.2010.10 95 188 1.6E-33 T 31-10-2018 Y89_0609 411eb2170641352f1e6ea4721cf7efb7 323 SUPERFAMILY SSF69349 103 269 2.2E-12 T 31-10-2018 Y89_0609 411eb2170641352f1e6ea4721cf7efb7 323 SUPERFAMILY SSF69255 20 112 1.26E-12 T 31-10-2018 Y89_1965 1cdd8aea367847bd57064e1a62c7a713 634 Pfam PF00246 Zinc carboxypeptidase 86 272 1.9E-17 T 31-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Y89_1965 1cdd8aea367847bd57064e1a62c7a713 634 Gene3D G3DSA:3.40.630.10 68 365 4.9E-28 T 31-10-2018 Y89_1965 1cdd8aea367847bd57064e1a62c7a713 634 SUPERFAMILY SSF53187 76 348 3.64E-39 T 31-10-2018 Y89_3495 2c5fb2f40e243cdf64fe32a91d9c4248 291 SUPERFAMILY SSF53474 3 265 2.12E-26 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3495 2c5fb2f40e243cdf64fe32a91d9c4248 291 Gene3D G3DSA:3.40.50.1820 4 273 7.9E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3495 2c5fb2f40e243cdf64fe32a91d9c4248 291 PIRSF PIRSF037442 2 287 2.5E-95 T 31-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Y89_3495 2c5fb2f40e243cdf64fe32a91d9c4248 291 Pfam PF12146 Serine aminopeptidase, S33 27 117 5.3E-12 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 Y89_4622 c8ee9337d83cb7695c24ed821169febe 81 Pfam PF06611 Protein of unknown function (DUF1145) 4 58 7.7E-14 T 31-10-2018 IPR009525 Protein of unknown function DUF1145 Y89_4657 7a8ba8769f91a1c898ec310e9dcccbd5 192 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 54 157 1.7E-42 T 31-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 Y89_3757 1e05b0a0a7df5f245ed74d485a36a262 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 59 6.0E-6 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 Pfam PF00072 Response regulator receiver domain 5 114 3.6E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.9E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 SMART SM00448 3 114 3.1E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 Gene3D G3DSA:1.10.10.10 121 223 7.8E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 SUPERFAMILY SSF52172 3 180 6.83E-40 T 31-10-2018 IPR011006 CheY-like superfamily Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 Gene3D G3DSA:3.40.50.2300 1 120 8.2E-36 T 31-10-2018 Y89_1942 132dc319853087e4bb9fa36c481b13ba 223 SMART SM00862 146 220 6.7E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Y89_2074 c88f0b65eab41994ea5332f0adec2b3b 233 TIGRFAM TIGR02458 CbtA: cobalt transporter subunit CbtA (proposed) 1 226 1.5E-95 T 31-10-2018 IPR012666 Cobalt transporter subunit CbtA, putative Y89_2074 c88f0b65eab41994ea5332f0adec2b3b 233 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 2 224 3.2E-67 T 31-10-2018 IPR012666 Cobalt transporter subunit CbtA, putative Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 PIRSF PIRSF000437 21 827 0.0 T 31-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 PIRSF PIRSF500064 4 829 0.0 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 SUPERFAMILY SSF69593 262 523 6.93E-32 T 31-10-2018 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 SMART SM00563 304 431 9.4E-27 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 Pfam PF01553 Acyltransferase 292 428 8.5E-20 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 14 812 0.0 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 Y89_1353 b57ef55dc356314b994a7db7db4785ec 834 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 816 31.924 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 Y89_3296 82e708085f1cb9a6f7c2d429af620e2e 333 Gene3D G3DSA:1.20.1530.20 3 320 2.7E-39 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_3296 82e708085f1cb9a6f7c2d429af620e2e 333 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 9 318 4.5E-103 T 31-10-2018 IPR016833 Putative sodium bile acid cotransporter Y89_3296 82e708085f1cb9a6f7c2d429af620e2e 333 PIRSF PIRSF026166 1 332 2.1E-142 T 31-10-2018 IPR016833 Putative sodium bile acid cotransporter Y89_4278 d0f3800acf9ae0899bb77e664943f530 120 Gene3D G3DSA:3.30.160.370 1 120 9.1E-56 T 31-10-2018 Y89_4278 d0f3800acf9ae0899bb77e664943f530 120 Pfam PF16703 Domain of unknown function (DUF5064) 1 116 2.2E-52 T 31-10-2018 IPR032024 Protein of unknown function DUF5064 Y89_0689 d166c7b5b44be37a4c838ccaa372a6c4 117 Pfam PF16085 Bacteriophage holin Hol, superfamily III 1 113 3.5E-63 T 31-10-2018 IPR032128 Pyocin R2, holin Y89_4605 3b27edbaaed380e5c4f11a891bb6ee98 327 SUPERFAMILY SSF53850 61 277 2.76E-11 T 31-10-2018 Y89_4605 3b27edbaaed380e5c4f11a891bb6ee98 327 Gene3D G3DSA:3.40.190.150 31 318 9.5E-58 T 31-10-2018 Y89_4605 3b27edbaaed380e5c4f11a891bb6ee98 327 PIRSF PIRSF017082 1 327 3.4E-81 T 31-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Y89_4605 3b27edbaaed380e5c4f11a891bb6ee98 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 324 2.2E-24 T 31-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Y89_4605 3b27edbaaed380e5c4f11a891bb6ee98 327 Gene3D G3DSA:3.40.190.10 125 253 9.5E-58 T 31-10-2018 Y89_5846 7b5799be2770415b0b2e3ec8ed1ddcae 454 Gene3D G3DSA:1.10.150.130 133 248 1.8E-10 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal Y89_5846 7b5799be2770415b0b2e3ec8ed1ddcae 454 Gene3D G3DSA:1.10.443.10 249 434 4.3E-10 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_5846 7b5799be2770415b0b2e3ec8ed1ddcae 454 Pfam PF00589 Phage integrase family 273 424 8.1E-8 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Y89_5846 7b5799be2770415b0b2e3ec8ed1ddcae 454 SUPERFAMILY SSF56349 134 424 9.71E-32 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_3877 4685bde8b60744c54ea80a64c89dd426 262 SUPERFAMILY SSF52540 1 255 7.15E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3877 4685bde8b60744c54ea80a64c89dd426 262 Gene3D G3DSA:3.40.50.300 1 260 6.9E-61 T 31-10-2018 Y89_3877 4685bde8b60744c54ea80a64c89dd426 262 Pfam PF13614 AAA domain 1 179 1.2E-41 T 31-10-2018 IPR025669 AAA domain Y89_5415 09981ae0c1b4a1aee8878a0f7143f64d 205 Pfam PF13649 Methyltransferase domain 44 140 4.2E-12 T 31-10-2018 Y89_5415 09981ae0c1b4a1aee8878a0f7143f64d 205 Gene3D G3DSA:3.40.50.150 4 195 9.9E-25 T 31-10-2018 Y89_5415 09981ae0c1b4a1aee8878a0f7143f64d 205 SUPERFAMILY SSF53335 3 189 3.07E-26 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4604 aa59e7b8a846500cb2ad902c10406e13 427 Pfam PF03573 outer membrane porin, OprD family 37 425 2.4E-168 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4604 aa59e7b8a846500cb2ad902c10406e13 427 Gene3D G3DSA:2.40.160.10 42 427 1.0E-184 T 31-10-2018 IPR023614 Porin domain superfamily Y89_3273 40cd941c6dd0efc1834e87a7f2c8df87 188 Pfam PF06252 Protein of unknown function (DUF1018) 20 131 4.9E-22 T 31-10-2018 IPR009363 Bacteriophage Mu, Gp16 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 Gene3D G3DSA:3.40.190.10 33 306 5.4E-71 T 31-10-2018 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 Gene3D G3DSA:3.40.190.10 111 210 5.4E-71 T 31-10-2018 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 Pfam PF09084 NMT1/THI5 like 62 250 1.1E-25 T 31-10-2018 IPR015168 SsuA/THI5-like Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 SUPERFAMILY SSF53850 34 260 4.46E-52 T 31-10-2018 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 313 3.2E-75 T 31-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 Gene3D G3DSA:1.10.8.450 241 274 5.4E-71 T 31-10-2018 Y89_1557 39936d3e92738f3fd316aaf69ff143e8 333 SMART SM00062 31 247 0.0014 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_3458 77cb91bf5761874d9eca866ad4fbcc12 175 Pfam PF11356 Type II secretion system protein C 38 162 9.5E-13 T 31-10-2018 IPR024961 Type II secretion system protein C, N-terminal Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 SUPERFAMILY SSF54631 10 142 1.64E-32 T 31-10-2018 Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 Pfam PF00571 CBS domain 14 61 6.9E-10 T 31-10-2018 IPR000644 CBS domain Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 Pfam PF00571 CBS domain 74 125 1.3E-11 T 31-10-2018 IPR000644 CBS domain Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 Gene3D G3DSA:3.10.580.10 1 143 5.4E-45 T 31-10-2018 Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 SMART SM00116 80 127 2.2E-7 T 31-10-2018 IPR000644 CBS domain Y89_0257 92999107fdbb80ce7ad72a39d80da62a 144 SMART SM00116 15 62 2.3E-6 T 31-10-2018 IPR000644 CBS domain Y89_2600 cd3c4210b81d426cc3a4839f4a91e14b 339 Gene3D G3DSA:3.20.20.140 1 336 2.4E-68 T 31-10-2018 Y89_2600 cd3c4210b81d426cc3a4839f4a91e14b 339 Pfam PF04909 Amidohydrolase 3 333 3.0E-28 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Y89_2600 cd3c4210b81d426cc3a4839f4a91e14b 339 SUPERFAMILY SSF51556 2 334 2.16E-69 T 31-10-2018 IPR032466 Metal-dependent hydrolase Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 PRINTS PR00607 Class IE cytochrome C signature 84 94 1.7E-19 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 PRINTS PR00607 Class IE cytochrome C signature 129 140 1.7E-19 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 PRINTS PR00607 Class IE cytochrome C signature 114 126 1.7E-19 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 PRINTS PR00607 Class IE cytochrome C signature 73 84 1.7E-19 T 31-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 63 139 2.2E-13 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 Gene3D G3DSA:1.10.760.10 60 142 3.2E-32 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_6038 cd1e4ac5765d647a7b351b4f3a9a1adc 142 SUPERFAMILY SSF46626 61 141 1.32E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_3383 00166b8209c03239a5795b7ba774fee7 631 SUPERFAMILY SSF46626 351 599 1.27E-17 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2580 0960eb0d07901642296190b0fe97a857 333 SUPERFAMILY SSF56529 132 327 1.44E-61 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_2580 0960eb0d07901642296190b0fe97a857 333 Gene3D G3DSA:3.90.850.10 24 326 1.5E-70 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Y89_2580 0960eb0d07901642296190b0fe97a857 333 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 140 325 1.4E-57 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Y89_5476 2c0acece7dd1b6d577d156a08bcd79ca 388 SUPERFAMILY SSF52540 135 348 1.52E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5476 2c0acece7dd1b6d577d156a08bcd79ca 388 Pfam PF13401 AAA domain 147 283 3.1E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain Y89_5476 2c0acece7dd1b6d577d156a08bcd79ca 388 Gene3D G3DSA:3.40.50.300 131 297 2.0E-7 T 31-10-2018 Y89_5473 a735396d16b2ec512805c111eca58d55 104 Gene3D G3DSA:1.10.10.10 2 80 3.7E-11 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5473 a735396d16b2ec512805c111eca58d55 104 SUPERFAMILY SSF46785 11 81 9.99E-7 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2603 414fa51b71c8f43e40f396265d3fdd6d 124 SUPERFAMILY SSF54593 2 121 5.5E-19 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2603 414fa51b71c8f43e40f396265d3fdd6d 124 Gene3D G3DSA:3.10.180.10 1 122 1.9E-34 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1352 fd61b0c7d6745cb6d8f13d681509127e 132 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 25 118 2.8E-33 T 31-10-2018 IPR039366 YscW/ExsB Y89_1563 e18a041f324c9163b551debc4553eec6 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 245 4.0E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_1563 e18a041f324c9163b551debc4553eec6 262 SUPERFAMILY SSF161098 55 236 7.85E-37 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1563 e18a041f324c9163b551debc4553eec6 262 Gene3D G3DSA:1.10.3720.10 50 247 3.1E-29 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0620 fc2c337e3e565b64f409444998340a50 161 Pfam PF03245 Bacteriophage Rz lysis protein 23 147 4.7E-24 T 31-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 Y89_0995 92837a08d3c6f81630442e675a989dbc 221 Pfam PF09335 SNARE associated Golgi protein 47 172 2.4E-25 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_5983 4f14654f7c70f8c6713f00cacb9267e5 871 Pfam PF13166 AAA domain 390 717 7.4E-12 T 31-10-2018 IPR026866 Protein CR006, P-loop domain Y89_5983 4f14654f7c70f8c6713f00cacb9267e5 871 SUPERFAMILY SSF52540 94 704 9.31E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_5983 4f14654f7c70f8c6713f00cacb9267e5 871 Gene3D G3DSA:3.40.50.300 465 710 5.0E-16 T 31-10-2018 Y89_3512 12910a3bd026c33718c14b61b079207d 129 Gene3D G3DSA:3.10.450.50 1 128 9.1E-37 T 31-10-2018 Y89_3512 12910a3bd026c33718c14b61b079207d 129 SUPERFAMILY SSF54427 1 127 4.27E-37 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_3512 12910a3bd026c33718c14b61b079207d 129 Pfam PF12680 SnoaL-like domain 8 114 7.0E-17 T 31-10-2018 IPR037401 SnoaL-like domain Y89_1471 892be0a2cdf66e54f2a17a2e603b3b36 549 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 1 547 41.41 T 31-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 Y89_1471 892be0a2cdf66e54f2a17a2e603b3b36 549 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 10 236 4.0E-30 T 31-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 PIRSF PIRSF000018 2 435 3.1E-167 T 31-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 Gene3D G3DSA:1.10.760.10 163 287 2.1E-8 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 Gene3D G3DSA:1.10.760.10 294 426 4.8E-34 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 SUPERFAMILY SSF46626 315 417 5.44E-26 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 SUPERFAMILY SSF46626 176 293 1.03E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 PRINTS PR00605 Class IC cytochrome C signature 322 333 2.6E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 PRINTS PR00605 Class IC cytochrome C signature 375 397 2.6E-5 T 31-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 313 397 8.6E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 Gene3D G3DSA:1.10.760.10 2 131 8.0E-11 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 Pfam PF00034 Cytochrome c 30 127 2.2E-5 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2988 5cd4eb156ed31ffcdacde1ed9c13efc8 439 SUPERFAMILY SSF46626 19 152 1.4E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_4186 b8281ba8a6f88ba146bfef2eeedd1508 223 Pfam PF08787 Alginate lyase 3 222 2.4E-52 T 31-10-2018 IPR014895 Alginate lyase 2 Y89_4186 b8281ba8a6f88ba146bfef2eeedd1508 223 SUPERFAMILY SSF49899 3 222 7.75E-76 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Y89_4186 b8281ba8a6f88ba146bfef2eeedd1508 223 Gene3D G3DSA:2.60.120.200 2 223 3.0E-73 T 31-10-2018 Y89_4761 75da13ad9d1652e0342dc44a3d212653 198 Pfam PF01126 Heme oxygenase 15 194 4.7E-35 T 31-10-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_4761 75da13ad9d1652e0342dc44a3d212653 198 Gene3D G3DSA:1.20.910.10 1 198 8.4E-52 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_4761 75da13ad9d1652e0342dc44a3d212653 198 SUPERFAMILY SSF48613 14 196 5.72E-55 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Y89_0853 2c5e663c91bf5333c513cd62d6ee2509 142 SUPERFAMILY SSF46785 3 136 5.54E-30 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_0853 2c5e663c91bf5333c513cd62d6ee2509 142 Pfam PF02082 Transcriptional regulator 1 81 5.8E-23 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type Y89_0853 2c5e663c91bf5333c513cd62d6ee2509 142 Gene3D G3DSA:1.10.10.10 2 140 2.7E-39 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_5864 f42976a0d8f0e49d7d56c3b8903e4320 145 Gene3D G3DSA:3.10.350.10 96 143 4.7E-14 T 31-10-2018 IPR036779 LysM domain superfamily Y89_5864 f42976a0d8f0e49d7d56c3b8903e4320 145 SUPERFAMILY SSF54106 94 144 9.16E-7 T 31-10-2018 Y89_5864 f42976a0d8f0e49d7d56c3b8903e4320 145 Pfam PF01476 LysM domain 96 144 1.1E-11 T 31-10-2018 IPR018392 LysM domain Y89_5864 f42976a0d8f0e49d7d56c3b8903e4320 145 Pfam PF04972 BON domain 22 87 5.5E-13 T 31-10-2018 IPR007055 BON domain Y89_5864 f42976a0d8f0e49d7d56c3b8903e4320 145 SMART SM00257 95 144 5.6E-10 T 31-10-2018 IPR018392 LysM domain Y89_1411 81eb77b4fc5114735ae3ca575dc4b16a 356 Gene3D G3DSA:3.40.50.450 62 328 4.7E-55 T 31-10-2018 Y89_1411 81eb77b4fc5114735ae3ca575dc4b16a 356 SUPERFAMILY SSF102405 68 263 9.31E-47 T 31-10-2018 Y89_1411 81eb77b4fc5114735ae3ca575dc4b16a 356 Pfam PF03641 Possible lysine decarboxylase 131 263 6.5E-29 T 31-10-2018 IPR031100 LOG family Y89_3371 d2c932155b068fe21d9038a617ab1ed3 226 Pfam PF03412 Peptidase C39 family 47 178 6.3E-21 T 31-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Y89_3371 d2c932155b068fe21d9038a617ab1ed3 226 Gene3D G3DSA:3.90.70.10 34 190 2.5E-35 T 31-10-2018 Y89_4982 208e7b4832cc49bb5bb9fad765961e10 269 PIRSF PIRSF012281 3 269 5.7E-127 T 31-10-2018 IPR012039 Uncharacterised conserved protein UCP012281 Y89_4982 208e7b4832cc49bb5bb9fad765961e10 269 Pfam PF09906 Uncharacterized protein conserved in bacteria (DUF2135) 199 255 1.7E-16 T 31-10-2018 IPR019220 Domain of unknown function DUF2135 Y89_3778 834b3b3e1387f01de9fdfc8a02b52dc3 210 SUPERFAMILY SSF53474 4 182 6.29E-27 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_3778 834b3b3e1387f01de9fdfc8a02b52dc3 210 Gene3D G3DSA:3.40.50.1820 13 193 5.0E-31 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_6081 d51a566d4cadeb0651ec50112bb2f6c4 283 Gene3D G3DSA:3.40.50.720 2 283 1.0E-86 T 31-10-2018 Y89_6081 d51a566d4cadeb0651ec50112bb2f6c4 283 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 164 7.1E-8 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_6081 d51a566d4cadeb0651ec50112bb2f6c4 283 SUPERFAMILY SSF51735 1 279 2.56E-35 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 Pfam PF01311 Bacterial export proteins, family 1 11 243 4.4E-51 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 4 256 1.8E-88 T 31-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.8E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.8E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 1.8E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3642 7caa4df95eea9c6adcddbba3f8e46bd5 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 19 40 1.8E-27 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Y89_3453 c051c1cb3f1d44bb70aa81eab6f45989 263 Pfam PF12787 EcsC protein family 8 243 2.9E-39 T 31-10-2018 IPR024787 EcsC protein Y89_0092 49876eb7338203212b9c6c933ba10d06 344 Pfam PF06812 ImpA, N-terminal, type VI secretion system 8 131 6.6E-34 T 31-10-2018 IPR010657 ImpA, N-terminal Y89_0092 49876eb7338203212b9c6c933ba10d06 344 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 3 340 1.5E-99 T 31-10-2018 IPR017740 Type VI secretion system-associated, ImpA Y89_4530 a19533a5a9d9274d1a19d27451405161 277 PIRSF PIRSF007580 1 277 1.8E-100 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_4530 a19533a5a9d9274d1a19d27451405161 277 Pfam PF10118 Predicted metal-dependent hydrolase 13 257 9.8E-89 T 31-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 Y89_1273 50f9b45141fe090f1ae54922d3370156 203 SUPERFAMILY SSF55811 10 178 2.84E-32 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Y89_1273 50f9b45141fe090f1ae54922d3370156 203 Gene3D G3DSA:3.90.79.10 2 183 1.9E-48 T 31-10-2018 Y89_1273 50f9b45141fe090f1ae54922d3370156 203 Pfam PF00293 NUDIX domain 28 136 5.8E-11 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Y89_4788 31e6fba7a27dca3a9f1d3675c63f5601 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 335 353 8.9E-11 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4788 31e6fba7a27dca3a9f1d3675c63f5601 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 358 372 8.9E-11 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4788 31e6fba7a27dca3a9f1d3675c63f5601 416 PRINTS PR00811 Bacterial general secretion pathway protein D signature 205 229 8.9E-11 T 31-10-2018 IPR001775 GspD/PilQ family Y89_4788 31e6fba7a27dca3a9f1d3675c63f5601 416 Pfam PF13629 Pilus formation protein N terminal region 39 108 1.8E-19 T 31-10-2018 IPR032789 Pilus formation protein, N-terminal Y89_4788 31e6fba7a27dca3a9f1d3675c63f5601 416 Pfam PF00263 Bacterial type II and III secretion system protein 209 371 1.9E-43 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_5669 2f5cbc9c5ce880082303679241161c19 216 SUPERFAMILY SSF56112 15 157 2.99E-16 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_5669 2f5cbc9c5ce880082303679241161c19 216 Gene3D G3DSA:1.10.510.10 94 181 1.9E-5 T 31-10-2018 Y89_2538 42c7e1b9e9838ebe14d67afc9a913f89 552 Pfam PF06980 Protein of unknown function (DUF1302) 39 551 2.6E-107 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_2138 9fc214fada44864f4863611dd6639a2f 254 Pfam PF02517 CAAX protease self-immunity 150 239 9.2E-14 T 31-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Y89_2222 00c9526794e4c709cee44dc2ed4a2556 182 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 46 181 1.8E-10 T 31-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Y89_2222 00c9526794e4c709cee44dc2ed4a2556 182 Gene3D G3DSA:2.60.40.420 29 182 5.1E-37 T 31-10-2018 IPR008972 Cupredoxin Y89_2222 00c9526794e4c709cee44dc2ed4a2556 182 SUPERFAMILY SSF49503 43 181 1.17E-31 T 31-10-2018 IPR008972 Cupredoxin Y89_4559 8c819d8d281866cf1865c054a55764ac 203 SUPERFAMILY SSF53335 22 201 8.52E-32 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4559 8c819d8d281866cf1865c054a55764ac 203 Pfam PF13489 Methyltransferase domain 29 182 5.6E-20 T 31-10-2018 Y89_4559 8c819d8d281866cf1865c054a55764ac 203 Gene3D G3DSA:3.40.50.150 24 191 6.1E-30 T 31-10-2018 Y89_2325 a542d2d2d5346e7b6091dfd3a34ff2b0 199 SUPERFAMILY SSF51306 72 194 9.42E-20 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Y89_2325 a542d2d2d5346e7b6091dfd3a34ff2b0 199 Gene3D G3DSA:2.10.109.10 92 195 7.6E-8 T 31-10-2018 Y89_2325 a542d2d2d5346e7b6091dfd3a34ff2b0 199 Pfam PF10502 Signal peptidase, peptidase S26 51 195 8.2E-52 T 31-10-2018 IPR019533 Peptidase S26 Y89_2157 91c1967aff350390041921b96295ce0c 476 Gene3D G3DSA:3.40.190.10 141 244 2.2E-31 T 31-10-2018 Y89_2157 91c1967aff350390041921b96295ce0c 476 SUPERFAMILY SSF53850 47 284 3.6E-24 T 31-10-2018 Y89_2157 91c1967aff350390041921b96295ce0c 476 Gene3D G3DSA:1.10.530.10 303 464 1.6E-29 T 31-10-2018 Y89_2157 91c1967aff350390041921b96295ce0c 476 Gene3D G3DSA:3.40.190.10 43 272 2.2E-31 T 31-10-2018 Y89_2157 91c1967aff350390041921b96295ce0c 476 Pfam PF01464 Transglycosylase SLT domain 310 418 8.9E-16 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_2157 91c1967aff350390041921b96295ce0c 476 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 66 271 6.2E-8 T 31-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Y89_2157 91c1967aff350390041921b96295ce0c 476 SUPERFAMILY SSF53955 285 457 3.38E-31 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_2421 1d1b7be7cd6f8c35ee81d0cfcf558547 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 2 94 2.0E-34 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Y89_2421 1d1b7be7cd6f8c35ee81d0cfcf558547 118 Gene3D G3DSA:3.30.479.10 1 118 5.4E-51 T 31-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Y89_2421 1d1b7be7cd6f8c35ee81d0cfcf558547 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 117 1.1E-38 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Y89_2421 1d1b7be7cd6f8c35ee81d0cfcf558547 118 PIRSF PIRSF006113 1 118 1.8E-51 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Y89_2421 1d1b7be7cd6f8c35ee81d0cfcf558547 118 SUPERFAMILY SSF55620 2 117 5.34E-43 T 31-10-2018 Y89_5805 2dfbc72ff3a8daf44ed6721550f00561 478 Gene3D G3DSA:2.70.70.10 340 475 1.1E-34 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_5805 2dfbc72ff3a8daf44ed6721550f00561 478 SUPERFAMILY SSF51261 289 474 5.89E-47 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_5805 2dfbc72ff3a8daf44ed6721550f00561 478 Pfam PF01551 Peptidase family M23 377 470 5.0E-25 T 31-10-2018 IPR016047 Peptidase M23 Y89_0099 7fa439856f827fb42edfd906d73a1b12 348 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 22 319 9.7E-111 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_0099 7fa439856f827fb42edfd906d73a1b12 348 Pfam PF06996 Type VI secretion, TssG 21 319 1.9E-107 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_2999 86937902852f76f00cc1db850e616b3d 291 Gene3D G3DSA:3.60.130.10 1 291 1.1E-122 T 31-10-2018 Y89_2999 86937902852f76f00cc1db850e616b3d 291 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 43 275 1.1E-38 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Y89_2999 86937902852f76f00cc1db850e616b3d 291 SUPERFAMILY SSF51197 22 277 3.07E-54 T 31-10-2018 Y89_1119 1173b3683f2aeec912858dcf1bc72024 131 Pfam PF05488 PAAR motif 2 52 2.0E-15 T 31-10-2018 IPR008727 PAAR motif Y89_1119 1173b3683f2aeec912858dcf1bc72024 131 Gene3D G3DSA:2.60.200.60 1 58 7.9E-14 T 31-10-2018 Y89_4444 b1c83badb9e4fa5d1c71353ce7d51094 153 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.1E-20 T 31-10-2018 IPR009921 Domain of unknown function DUF1456 Y89_4444 b1c83badb9e4fa5d1c71353ce7d51094 153 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 5.4E-25 T 31-10-2018 IPR009921 Domain of unknown function DUF1456 Y89_4810 3f480d2857afb1849dd80c82a45f86bf 140 Pfam PF13511 Domain of unknown function (DUF4124) 8 57 8.6E-15 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_0695 a485d76925b27e41fa6ca0360df130a5 691 Pfam PF12571 Phage tail-collar fibre protein 7 158 5.4E-47 T 31-10-2018 IPR022225 Phage tail fibre protein Y89_0695 a485d76925b27e41fa6ca0360df130a5 691 Gene3D G3DSA:2.60.40.3940 600 690 4.9E-10 T 31-10-2018 Y89_4258 7207649537c24918f63c223fce613f5f 98 Pfam PF05400 Flagellar protein FliT 16 94 2.8E-8 T 31-10-2018 IPR008622 Flagellar protein FliT Y89_2438 3d172dbd552add1e6a47bab4b8887cd1 269 SUPERFAMILY SSF53335 55 200 7.36E-27 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_2438 3d172dbd552add1e6a47bab4b8887cd1 269 Gene3D G3DSA:3.40.50.150 38 219 1.7E-23 T 31-10-2018 Y89_2438 3d172dbd552add1e6a47bab4b8887cd1 269 Pfam PF08241 Methyltransferase domain 68 162 4.0E-16 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Y89_3911 e80f32f15158f9f4c63a7d0809846cb1 143 SUPERFAMILY SSF55729 1 142 1.89E-27 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_3911 e80f32f15158f9f4c63a7d0809846cb1 143 Gene3D G3DSA:3.40.630.30 1 143 3.9E-38 T 31-10-2018 Y89_3911 e80f32f15158f9f4c63a7d0809846cb1 143 Pfam PF13673 Acetyltransferase (GNAT) domain 50 130 3.0E-16 T 31-10-2018 IPR000182 GNAT domain Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 SUPERFAMILY SSF161098 338 524 5.76E-24 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 362 528 1.7E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 271 1.9E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 SUPERFAMILY SSF161098 78 263 2.49E-24 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 Gene3D G3DSA:1.10.3720.10 73 271 7.5E-17 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0197 af2a0b193d7f84ee28a5f3d132ae380e 538 Gene3D G3DSA:1.10.3720.10 340 534 1.8E-21 T 31-10-2018 IPR035906 MetI-like superfamily Y89_6163 36bbc81fd5b5a203ede101292a319d64 81 Pfam PF04226 Transglycosylase associated protein 33 80 3.1E-12 T 31-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 Y89_1089 4988d659c768a7725742870bc3b5f798 678 Pfam PF03169 OPT oligopeptide transporter protein 13 634 5.1E-110 T 31-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Y89_1089 4988d659c768a7725742870bc3b5f798 678 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 13 636 2.5E-214 T 31-10-2018 IPR004814 Oligopeptide transporter OPT Y89_1089 4988d659c768a7725742870bc3b5f798 678 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 7 632 1.5E-112 T 31-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Y89_6013 ea45986d8c3877f076b620218ca6763d 397 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 216 386 1.0E-40 T 31-10-2018 IPR024534 Domain of unknown function DUF2220 Y89_6013 ea45986d8c3877f076b620218ca6763d 397 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 8 193 1.8E-45 T 31-10-2018 IPR024537 Domain of unknown function DUF3322 Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 Gene3D G3DSA:3.40.50.1100 12 308 1.1E-126 T 31-10-2018 Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 313 4.3E-137 T 31-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 313 7.8E-132 T 31-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 Gene3D G3DSA:3.40.50.1100 45 147 1.1E-126 T 31-10-2018 Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 302 1.3E-66 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 SUPERFAMILY SSF53686 6 312 1.13E-98 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Y89_2378 b6269d3007b1ea3de78930dae18ce7bf 324 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 31-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Y89_0592 8c283add025f6f125ca81b2782eec486 204 Pfam PF14300 Domain of unknown function (DUF4375) 73 194 1.9E-26 T 31-10-2018 IPR025402 Domain of unknown function DUF4375 Y89_3367 019500e9cf06721942d5eea30d772577 175 Pfam PF13521 AAA domain 5 160 9.0E-31 T 31-10-2018 IPR038727 NadR/Ttd14, AAA domain Y89_3367 019500e9cf06721942d5eea30d772577 175 SUPERFAMILY SSF52540 2 169 2.26E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_3367 019500e9cf06721942d5eea30d772577 175 Gene3D G3DSA:3.40.50.300 1 165 1.3E-38 T 31-10-2018 Y89_3065 ebf1a578efcc9c10e2d3c17fd11542ce 440 SUPERFAMILY SSF103473 18 425 7.98E-72 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_3065 ebf1a578efcc9c10e2d3c17fd11542ce 440 Pfam PF07690 Major Facilitator Superfamily 26 390 1.5E-42 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_3065 ebf1a578efcc9c10e2d3c17fd11542ce 440 Gene3D G3DSA:1.20.1250.20 5 427 5.4E-67 T 31-10-2018 Y89_4796 0563836ab4ce4e0405ae2ba0407baf8c 253 Gene3D G3DSA:3.20.20.370 25 240 1.2E-13 T 31-10-2018 Y89_4796 0563836ab4ce4e0405ae2ba0407baf8c 253 SUPERFAMILY SSF88713 6 166 4.73E-14 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Y89_4796 0563836ab4ce4e0405ae2ba0407baf8c 253 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 6 158 1.9E-31 T 31-10-2018 IPR018763 Protein of unknown function DUF2334 Y89_5456 a9f797b2e248d9cd53bf56714e9771d3 416 Pfam PF04233 Phage Mu protein F like protein 56 169 2.0E-17 T 31-10-2018 IPR006528 Phage head morphogenesis domain Y89_4980 ec64883e1c2dccfd7ad4455f88aa7242 216 Pfam PF06672 Protein of unknown function (DUF1175) 25 214 2.1E-77 T 31-10-2018 IPR009558 Protein of unknown function DUF1175 Y89_4980 ec64883e1c2dccfd7ad4455f88aa7242 216 Gene3D G3DSA:3.90.1720.10 41 201 1.4E-7 T 31-10-2018 Y89_4036 4e92ad2511e25ac81719fb1afccd8081 128 SUPERFAMILY SSF54427 4 127 2.37E-43 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_4036 4e92ad2511e25ac81719fb1afccd8081 128 Gene3D G3DSA:3.10.450.50 1 128 8.9E-47 T 31-10-2018 Y89_4036 4e92ad2511e25ac81719fb1afccd8081 128 PIRSF PIRSF029394 1 128 6.1E-50 T 31-10-2018 IPR016918 Uncharacterised conserved protein UCP029394 Y89_4036 4e92ad2511e25ac81719fb1afccd8081 128 Pfam PF14534 Domain of unknown function (DUF4440) 26 114 6.4E-6 T 31-10-2018 IPR027843 Domain of unknown function DUF4440 Y89_0438 3d0e5416dd4238eb1a1c5ff422283979 168 SUPERFAMILY SSF50341 20 158 1.44E-9 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Y89_0438 3d0e5416dd4238eb1a1c5ff422283979 168 Pfam PF01584 CheW-like domain 26 158 1.2E-10 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_0438 3d0e5416dd4238eb1a1c5ff422283979 168 SMART SM00260 21 159 1.5E-15 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Y89_4501 a7ab82095461cc1af7662b75dfe2d6e9 212 Gene3D G3DSA:1.10.472.60 45 171 8.8E-69 T 31-10-2018 Y89_4501 a7ab82095461cc1af7662b75dfe2d6e9 212 Gene3D G3DSA:3.40.30.10 8 198 8.8E-69 T 31-10-2018 Y89_4501 a7ab82095461cc1af7662b75dfe2d6e9 212 SUPERFAMILY SSF52833 5 208 1.5E-40 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_4501 a7ab82095461cc1af7662b75dfe2d6e9 212 Pfam PF01323 DSBA-like thioredoxin domain 9 187 2.1E-14 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Y89_4872 1f4dc399fbbee3ccb358d84fcafba193 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 3.9E-24 T 31-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y89_4872 1f4dc399fbbee3ccb358d84fcafba193 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.048 T 31-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y89_4872 1f4dc399fbbee3ccb358d84fcafba193 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 119 9.9E-33 T 31-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Y89_1938 f1789a504053a3e88cd6b5186fae97de 455 Pfam PF07044 Protein of unknown function (DUF1329) 84 450 5.1E-162 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_3355 46c9b4f06024503805e7b92e509b47a6 115 Gene3D G3DSA:3.30.10.10 48 114 1.2E-19 T 31-10-2018 Y89_3355 46c9b4f06024503805e7b92e509b47a6 115 Pfam PF11720 Peptidase inhibitor I78 family 51 115 8.5E-17 T 31-10-2018 IPR021719 Proteinase inhibitor I78 Y89_3128 df3137c89d560647e66295e3b24b5179 163 PRINTS PR01837 MgtC/SapB protein signature 109 133 2.9E-37 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_3128 df3137c89d560647e66295e3b24b5179 163 PRINTS PR01837 MgtC/SapB protein signature 34 53 2.9E-37 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_3128 df3137c89d560647e66295e3b24b5179 163 PRINTS PR01837 MgtC/SapB protein signature 53 71 2.9E-37 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_3128 df3137c89d560647e66295e3b24b5179 163 PRINTS PR01837 MgtC/SapB protein signature 80 102 2.9E-37 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_3128 df3137c89d560647e66295e3b24b5179 163 Pfam PF02308 MgtC family 31 154 5.4E-35 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5663 93182002f49585c6026e71d7359bc827 270 SUPERFAMILY SSF51430 10 267 2.49E-48 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_5663 93182002f49585c6026e71d7359bc827 270 Gene3D G3DSA:3.20.20.100 1 270 4.7E-112 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Y89_5663 93182002f49585c6026e71d7359bc827 270 Pfam PF00248 Aldo/keto reductase family 22 219 4.8E-31 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain Y89_2038 d0585b42beea8db0c7c5b16edf4b406b 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 138 1.6E-26 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Y89_2038 d0585b42beea8db0c7c5b16edf4b406b 146 Gene3D G3DSA:3.30.420.270 65 135 3.3E-5 T 31-10-2018 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 PRINTS PR01415 Ankyrin repeat signature 167 181 8.1E-7 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 PRINTS PR01415 Ankyrin repeat signature 114 129 8.1E-7 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SUPERFAMILY SSF48403 18 209 4.66E-47 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 Pfam PF12796 Ankyrin repeats (3 copies) 89 182 1.2E-12 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 Pfam PF12796 Ankyrin repeats (3 copies) 17 78 1.9E-6 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 Gene3D G3DSA:1.25.40.20 14 210 1.8E-54 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 47 76 1.5E-4 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 146 180 0.7 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 80 109 1800.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 113 142 0.017 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_2694 23f977daeb2ef07ff3116f464e5dcb36 210 SMART SM00248 14 43 2300.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 Y89_1297 8f0ac94ed20d50befe2c1515afc2228c 206 Pfam PF09938 Uncharacterized protein conserved in bacteria (DUF2170) 66 202 1.7E-50 T 31-10-2018 IPR019231 Protein of unknown function DUF2170 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 SUPERFAMILY SSF54373 293 476 1.86E-58 T 31-10-2018 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 PIRSF PIRSF000137 3 541 1.3E-146 T 31-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 Gene3D G3DSA:3.50.50.60 9 524 2.2E-168 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 Pfam PF00732 GMC oxidoreductase 8 298 2.0E-76 T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 Pfam PF05199 GMC oxidoreductase 390 526 3.3E-39 T 31-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 Gene3D G3DSA:3.30.560.10 46 471 2.2E-168 T 31-10-2018 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 257 271 - T 31-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Y89_1316 d98f905be1fb30d363513ea44450dd0b 557 SUPERFAMILY SSF51905 7 535 5.83E-86 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2886 f39b133a5609e837eb0b238a04cdc3c0 416 Pfam PF04233 Phage Mu protein F like protein 56 169 2.0E-17 T 31-10-2018 IPR006528 Phage head morphogenesis domain Y89_6247 d3cb0068f22ee05579e87b71a0dd6578 217 Pfam PF00857 Isochorismatase family 19 199 1.6E-35 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_6247 d3cb0068f22ee05579e87b71a0dd6578 217 SUPERFAMILY SSF52499 7 209 1.23E-48 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_6247 d3cb0068f22ee05579e87b71a0dd6578 217 Gene3D G3DSA:3.40.50.850 6 215 2.2E-53 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1243 e643fae0d709ae7a55fe5597bfb07a7f 209 Pfam PF00857 Isochorismatase family 9 174 6.4E-31 T 31-10-2018 IPR000868 Isochorismatase-like GO:0003824 Y89_1243 e643fae0d709ae7a55fe5597bfb07a7f 209 SUPERFAMILY SSF52499 6 187 2.35E-45 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_1243 e643fae0d709ae7a55fe5597bfb07a7f 209 Gene3D G3DSA:3.40.50.850 3 209 3.2E-55 T 31-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 Gene3D G3DSA:3.90.660.10 43 286 1.8E-123 T 31-10-2018 Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 Gene3D G3DSA:3.50.50.60 5 321 1.8E-123 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 Pfam PF01593 Flavin containing amine oxidoreductase 109 324 3.0E-10 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 Hamap MF_02074 Renalase. 1 327 59.5 T 31-10-2018 IPR034721 Bacterial renalase GO:0000166|GO:0016491 Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 68 2.1E-15 T 31-10-2018 Y89_5268 8f38be811f4cd2db944a6156e450bc54 327 SUPERFAMILY SSF51905 2 327 6.33E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_6358 d560b952bdb0cd3f1131c7173350fa1c 176 Pfam PF08805 PilS N terminal 45 174 4.4E-31 T 31-10-2018 IPR014911 Type 4 secretion system, PilS, N-terminal Y89_6358 d560b952bdb0cd3f1131c7173350fa1c 176 SUPERFAMILY SSF54523 41 174 5.1E-37 T 31-10-2018 Y89_6358 d560b952bdb0cd3f1131c7173350fa1c 176 Gene3D G3DSA:3.30.1690.10 41 175 2.7E-34 T 31-10-2018 Y89_5914 4ef7f8687759cdb74cd5394ee2b986fc 104 Pfam PF05164 Cell division protein ZapA 8 90 3.5E-23 T 31-10-2018 IPR007838 Cell division protein ZapA-like Y89_5914 4ef7f8687759cdb74cd5394ee2b986fc 104 Gene3D G3DSA:1.20.5.50 49 104 6.6E-33 T 31-10-2018 Y89_5914 4ef7f8687759cdb74cd5394ee2b986fc 104 SUPERFAMILY SSF102829 7 96 3.14E-25 T 31-10-2018 IPR036192 Cell division protein ZapA-like superfamily Y89_5914 4ef7f8687759cdb74cd5394ee2b986fc 104 Gene3D G3DSA:1.10.20.30 1 48 2.5E-26 T 31-10-2018 Y89_3429 ab0645a58c6af25131a21a2e635c4d63 424 Pfam PF00487 Fatty acid desaturase 86 357 1.1E-7 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_6141 7c51514225cff7b2498fbf17afcc2c6e 68 SUPERFAMILY SSF47413 1 65 1.47E-18 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_6141 7c51514225cff7b2498fbf17afcc2c6e 68 Gene3D G3DSA:1.10.260.40 1 64 1.9E-10 T 31-10-2018 Y89_6141 7c51514225cff7b2498fbf17afcc2c6e 68 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 67 2.5E-23 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_6141 7c51514225cff7b2498fbf17afcc2c6e 68 SMART SM00530 5 61 1.5E-6 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Y89_3644 e5b288c1104917642aea98a62d9d23cd 700 Gene3D G3DSA:3.40.720.10 313 598 9.4E-53 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Y89_3644 e5b288c1104917642aea98a62d9d23cd 700 Pfam PF00884 Sulfatase 315 594 2.1E-45 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Y89_3644 e5b288c1104917642aea98a62d9d23cd 700 SUPERFAMILY SSF53649 315 680 6.4E-64 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Y89_3644 e5b288c1104917642aea98a62d9d23cd 700 PIRSF PIRSF005091 16 695 4.5E-133 T 31-10-2018 IPR012160 Lipoteichoic acid synthase-like Y89_3779 d34c1b7ae544d66d6be16d0adfd17204 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 444 8.5E-113 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3779 d34c1b7ae544d66d6be16d0adfd17204 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3779 d34c1b7ae544d66d6be16d0adfd17204 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 472 1.3E-233 T 31-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Y89_3779 d34c1b7ae544d66d6be16d0adfd17204 475 SUPERFAMILY SSF81442 9 468 3.27E-125 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_3779 d34c1b7ae544d66d6be16d0adfd17204 475 Gene3D G3DSA:1.20.210.10 2 475 3.3E-217 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_2645 fd0b720301353e1476cf146d95be9ba4 141 SUPERFAMILY SSF54593 8 132 3.09E-27 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_2645 fd0b720301353e1476cf146d95be9ba4 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 132 9.1E-13 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Y89_2645 fd0b720301353e1476cf146d95be9ba4 141 Gene3D G3DSA:3.10.180.10 5 137 4.9E-28 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Y89_1506 612c46d4b22274554cdac4484da84018 491 Gene3D G3DSA:2.20.200.10 98 351 2.1E-110 T 31-10-2018 Y89_1506 612c46d4b22274554cdac4484da84018 491 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 462 7.7E-92 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Y89_1506 612c46d4b22274554cdac4484da84018 491 Gene3D G3DSA:1.20.1600.10 51 463 2.1E-110 T 31-10-2018 Y89_1506 612c46d4b22274554cdac4484da84018 491 SUPERFAMILY SSF56954 4 464 1.15E-89 T 31-10-2018 Y89_1506 612c46d4b22274554cdac4484da84018 491 Pfam PF02321 Outer membrane efflux protein 282 460 4.1E-20 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_1506 612c46d4b22274554cdac4484da84018 491 Pfam PF02321 Outer membrane efflux protein 61 249 3.3E-20 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_3816 5fbd490ba555e492cf498d22dd950599 279 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 18 248 1.7E-99 T 31-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC Y89_3816 5fbd490ba555e492cf498d22dd950599 279 Pfam PF02625 XdhC and CoxI family 11 71 3.0E-18 T 31-10-2018 IPR003777 XdhC- CoxI Y89_3816 5fbd490ba555e492cf498d22dd950599 279 Pfam PF13478 XdhC Rossmann domain 106 247 1.0E-37 T 31-10-2018 IPR027051 XdhC Rossmann domain Y89_3816 5fbd490ba555e492cf498d22dd950599 279 SUPERFAMILY SSF51735 97 188 1.62E-12 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_3816 5fbd490ba555e492cf498d22dd950599 279 Gene3D G3DSA:3.40.50.720 104 252 2.3E-37 T 31-10-2018 Y89_6162 86109d8d6f4c1715c1599d99f4517d43 182 Pfam PF11736 Protein of unknown function (DUF3299) 29 175 1.1E-45 T 31-10-2018 IPR021727 Protein of unknown function DUF3299 Y89_6162 86109d8d6f4c1715c1599d99f4517d43 182 Gene3D G3DSA:2.40.50.870 23 181 1.1E-43 T 31-10-2018 Y89_6345 9d69552dce5df123b09188a60751c4c3 182 Pfam PF11358 Protein of unknown function (DUF3158) 17 169 5.9E-61 T 31-10-2018 IPR021502 Protein of unknown function DUF3158 Y89_3929 55bee3202b7448586a79aa3b91d41847 139 Pfam PF13474 SnoaL-like domain 9 131 3.4E-16 T 31-10-2018 IPR037401 SnoaL-like domain Y89_3929 55bee3202b7448586a79aa3b91d41847 139 Gene3D G3DSA:3.10.450.50 4 134 2.3E-19 T 31-10-2018 Y89_3929 55bee3202b7448586a79aa3b91d41847 139 SUPERFAMILY SSF54427 2 131 2.16E-22 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2321 ff7bd5af012979af84dc737d9fdca3dd 274 Pfam PF10134 Replication initiator protein A 21 250 1.6E-93 T 31-10-2018 IPR018777 Replication initiator protein A Y89_0594 21b7ef2cfbd2a1755a3052c43dca7842 111 Pfam PF08378 Nuclease-related domain 33 90 9.6E-10 T 31-10-2018 IPR011528 Nuclease-related domain, NERD Y89_5159 eff6d461c81e6a93f96925ce0a48d864 274 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 3.3E-4 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_5159 eff6d461c81e6a93f96925ce0a48d864 274 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 2.0E-6 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site Y89_2818 8fabd194584810ebd44487d44b8f21b7 80 Pfam PF07867 Protein of unknown function (DUF1654) 12 78 7.0E-31 T 31-10-2018 IPR012449 Bacteriophage F116, Orf28 Y89_6202 f3e4ed4e8cce02ff4386ad2a7da049fb 105 Pfam PF09498 Protein of unknown function (DUF2388) 37 104 5.0E-32 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_6202 f3e4ed4e8cce02ff4386ad2a7da049fb 105 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 104 2.5E-42 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_4615 074cd33b68bf7ade379511db8f2e0145 367 Gene3D G3DSA:3.90.226.10 1 367 1.6E-120 T 31-10-2018 Y89_4615 074cd33b68bf7ade379511db8f2e0145 367 Pfam PF16113 Enoyl-CoA hydratase/isomerase 16 354 1.4E-110 T 31-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 Y89_4615 074cd33b68bf7ade379511db8f2e0145 367 SUPERFAMILY SSF52096 15 340 9.29E-59 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 7.0E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 7.0E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 SUPERFAMILY SSF48498 84 209 4.45E-12 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 2.8E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 Gene3D G3DSA:1.10.357.10 15 217 9.9E-50 T 31-10-2018 Y89_2554 b0ffa8b028ee2ff5dbbdc004baf4283a 217 SUPERFAMILY SSF46689 11 86 8.72E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_0085 f59051079055cca55d9aed6104ace21b 242 SUPERFAMILY SSF81606 9 240 3.14E-58 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0085 f59051079055cca55d9aed6104ace21b 242 Pfam PF13672 Protein phosphatase 2C 21 207 1.7E-11 T 31-10-2018 Y89_0085 f59051079055cca55d9aed6104ace21b 242 Gene3D G3DSA:3.60.40.10 4 241 8.9E-55 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0085 f59051079055cca55d9aed6104ace21b 242 SMART SM00331 15 241 6.2E-28 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0085 f59051079055cca55d9aed6104ace21b 242 SMART SM00332 6 239 3.0E-25 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Y89_0657 8c63b60d88c1df87905d2289a7e49a74 168 Pfam PF13590 Domain of unknown function (DUF4136) 31 165 6.0E-9 T 31-10-2018 IPR025411 Domain of unknown function DUF4136 Y89_2985 f3dda563ac7cf05f0138ecb68383e983 401 SUPERFAMILY SSF103473 17 389 1.31E-28 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2985 f3dda563ac7cf05f0138ecb68383e983 401 Gene3D G3DSA:1.20.1250.20 16 194 8.0E-11 T 31-10-2018 Y89_2985 f3dda563ac7cf05f0138ecb68383e983 401 Gene3D G3DSA:1.20.1250.20 209 393 1.4E-11 T 31-10-2018 Y89_6354 e13d3ef9744aec67daadd926868c49b4 441 Pfam PF06864 Pilin accessory protein (PilO) 23 440 6.2E-92 T 31-10-2018 IPR009663 Pilin accessory predicted Y89_2142 027aca0e22a5e553c529a4bd87341f2b 156 Pfam PF05232 Chlorhexidine efflux transporter 10 73 7.6E-25 T 31-10-2018 IPR007896 Chlorhexidine efflux transporter Y89_2142 027aca0e22a5e553c529a4bd87341f2b 156 Pfam PF05232 Chlorhexidine efflux transporter 78 141 8.1E-24 T 31-10-2018 IPR007896 Chlorhexidine efflux transporter Y89_2546 ed48870fdfd7fe293613a509a7daa01f 455 Pfam PF07044 Protein of unknown function (DUF1329) 83 428 1.9E-116 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_1094 b286f54d9611c128e9b36384236c1e65 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 1.6E-48 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y89_1094 b286f54d9611c128e9b36384236c1e65 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 1.0E-103 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y89_1094 b286f54d9611c128e9b36384236c1e65 335 PIRSF PIRSF000267 2 335 3.2E-96 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Y89_3710 24b5173364da565591ede39a8b0b7b8b 355 Pfam PF01594 AI-2E family transporter 11 338 7.2E-40 T 31-10-2018 IPR002549 Transmembrane protein TqsA-like Y89_1294 569c6823926d3bddf92e3966076e421f 336 Gene3D G3DSA:3.40.50.1820 80 322 1.2E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1294 569c6823926d3bddf92e3966076e421f 336 Pfam PF12740 Chlorophyllase enzyme 88 205 1.0E-8 T 31-10-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 Y89_1294 569c6823926d3bddf92e3966076e421f 336 SUPERFAMILY SSF53474 89 301 5.11E-19 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5898 ac789cfcd034d3bd8910f6dc9efc2ef8 150 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 148 9.9E-28 T 31-10-2018 IPR002810 NfeD-like, C-terminal domain Y89_4902 cc9a4ef7e24080549f7553173ddecc6c 399 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 337 361 - T 31-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4902 cc9a4ef7e24080549f7553173ddecc6c 399 Pfam PF01098 Cell cycle protein 25 380 2.8E-103 T 31-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4902 cc9a4ef7e24080549f7553173ddecc6c 399 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 19 388 40.121 T 31-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_4902 cc9a4ef7e24080549f7553173ddecc6c 399 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 23 378 4.4E-129 T 31-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Y89_6147 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 133 181 1.8E-6 T 31-10-2018 IPR005325 Protein of unknown function DUF308, membrane Y89_6147 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 76 146 6.1E-15 T 31-10-2018 IPR005325 Protein of unknown function DUF308, membrane Y89_6147 f44971580c6d362425835051e79360cf 186 Pfam PF03729 Short repeat of unknown function (DUF308) 19 86 1.2E-11 T 31-10-2018 IPR005325 Protein of unknown function DUF308, membrane Y89_2037 dbd1ae8ba85b261002113ed3b38f7e1e 211 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 187 7.4E-35 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Y89_3021 712c32ac50a1eb119be65da29e9b91db 264 Pfam PF02563 Polysaccharide biosynthesis/export protein 57 137 6.1E-14 T 31-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Y89_3021 712c32ac50a1eb119be65da29e9b91db 264 Gene3D G3DSA:3.10.560.10 123 229 1.5E-12 T 31-10-2018 Y89_5545 e4653b518844416529f3665cff0f5ddb 114 Pfam PF04355 SmpA / OmlA family 31 97 4.0E-14 T 31-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Y89_5545 e4653b518844416529f3665cff0f5ddb 114 Gene3D G3DSA:3.30.1450.10 18 114 1.2E-44 T 31-10-2018 IPR037873 BamE-like Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 Gene3D G3DSA:3.40.800.20 1 341 1.5E-121 T 31-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 Pfam PF00850 Histone deacetylase domain 28 336 5.1E-61 T 31-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 1.3E-12 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 1.3E-12 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 1.3E-12 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Y89_0341 b79f606b93b86f80a9881c7d548ce9b4 344 SUPERFAMILY SSF52768 2 341 1.1E-85 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily Y89_2559 6c507290d24bc9289e37c6d69fd89b35 116 Gene3D G3DSA:3.10.450.50 1 113 2.1E-7 T 31-10-2018 Y89_2559 6c507290d24bc9289e37c6d69fd89b35 116 SUPERFAMILY SSF54427 4 110 2.63E-8 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2785 279c68664d40d905b41a7d3654d153e8 141 PIRSF PIRSF029509 1 141 3.5E-48 T 31-10-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane Y89_0919 c0948c004a24f79fdb496a89fb80b555 169 Pfam PF07681 DoxX 25 110 2.7E-20 T 31-10-2018 IPR032808 DoxX family Y89_5452 7cfd699c14fdfb274d20aeb755557f2d 309 Gene3D G3DSA:3.90.1690.10 1 309 6.7E-79 T 31-10-2018 Y89_3142 3abd38b0dc65531b9122bf09e12418c4 129 Pfam PF00072 Response regulator receiver domain 9 116 2.5E-5 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Y89_3142 3abd38b0dc65531b9122bf09e12418c4 129 Gene3D G3DSA:3.40.50.2300 4 123 1.1E-9 T 31-10-2018 Y89_3142 3abd38b0dc65531b9122bf09e12418c4 129 SUPERFAMILY SSF52172 7 121 1.38E-12 T 31-10-2018 IPR011006 CheY-like superfamily Y89_0135 29b659316d48f0a07f31a849e25df2ed 93 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 87 4.7E-8 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Y89_0135 29b659316d48f0a07f31a849e25df2ed 93 Gene3D G3DSA:3.30.2310.20 1 90 1.1E-11 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Y89_4859 2b8bc98bad7d6d71c0c25140ba7eb7a3 354 Gene3D G3DSA:1.20.1420.20 19 354 7.8E-88 T 31-10-2018 IPR038352 Imelysin-like domain superfamily Y89_4859 2b8bc98bad7d6d71c0c25140ba7eb7a3 354 Pfam PF09375 Imelysin 36 332 5.7E-57 T 31-10-2018 IPR018976 Imelysin-like domain Y89_3243 07ef7a3f2bb3b102477794a9af1c4c72 171 Pfam PF07030 Protein of unknown function (DUF1320) 3 145 4.1E-29 T 31-10-2018 IPR009752 Bacteriophage Mu, Gp36 Y89_5497 16166af0a78e14cd51ff6b9951d5e9dc 151 Pfam PF09980 Predicted membrane protein (DUF2214) 3 148 1.8E-53 T 31-10-2018 IPR018706 Protein of unknown function DUF2214, membrane Y89_2718 3d79c3a9a46a4180d40739e51ac42701 333 Gene3D G3DSA:3.20.20.30 4 331 3.0E-98 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2718 3d79c3a9a46a4180d40739e51ac42701 333 SUPERFAMILY SSF51679 7 328 2.88E-85 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2718 3d79c3a9a46a4180d40739e51ac42701 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 328 3.9E-130 T 31-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 Y89_2718 3d79c3a9a46a4180d40739e51ac42701 333 Pfam PF00296 Luciferase-like monooxygenase 24 306 6.3E-39 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_6312 5e853f11506bc0e4b055234aa5725d10 460 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 35 448 9.0E-175 T 31-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 Y89_1831 51ca7e49ee6257436a9da6b1e9a60625 283 Pfam PF01263 Aldose 1-epimerase 29 277 9.9E-31 T 31-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Y89_1831 51ca7e49ee6257436a9da6b1e9a60625 283 Gene3D G3DSA:2.70.98.10 14 280 2.2E-44 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Y89_1831 51ca7e49ee6257436a9da6b1e9a60625 283 PIRSF PIRSF016020 3 283 4.6E-89 T 31-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 Y89_1831 51ca7e49ee6257436a9da6b1e9a60625 283 SUPERFAMILY SSF74650 18 277 4.65E-50 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Y89_3110 269e672960f5235c91706f812f6a89d4 121 Pfam PF12021 Protein of unknown function (DUF3509) 10 78 6.5E-14 T 31-10-2018 IPR021898 Protein of unknown function DUF3509 Y89_2108 b7431f9205479dd732227f43e3bcb247 343 SUPERFAMILY SSF81345 4 342 9.15E-77 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_2108 b7431f9205479dd732227f43e3bcb247 343 Gene3D G3DSA:1.10.3470.10 7 343 3.0E-93 T 31-10-2018 IPR037294 ABC transporter, BtuC-like Y89_2108 b7431f9205479dd732227f43e3bcb247 343 Pfam PF01032 FecCD transport family 22 341 3.5E-86 T 31-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Y89_0156 a68c74435751b273b4589235c6ca257a 350 Gene3D G3DSA:3.90.245.10 30 349 1.2E-104 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like Y89_0156 a68c74435751b273b4589235c6ca257a 350 SUPERFAMILY SSF53590 39 348 8.5E-98 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like Y89_0156 a68c74435751b273b4589235c6ca257a 350 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 41 340 1.4E-87 T 31-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Y89_0156 a68c74435751b273b4589235c6ca257a 350 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 45 55 - T 31-10-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 Y89_4669 c305b03e80e05762ffd51befd9da57fd 229 Pfam PF11444 Protein of unknown function (DUF2895) 6 206 1.7E-89 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_4669 c305b03e80e05762ffd51befd9da57fd 229 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 206 1.7E-94 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_4329 3cdf7ffc8d7bc266433ab7b84fae8ea5 158 SUPERFAMILY SSF54534 85 145 5.1E-6 T 31-10-2018 Y89_4847 91edd6774f8b9cfeb803151ed8b58082 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 227 2.2E-33 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_4847 91edd6774f8b9cfeb803151ed8b58082 329 Gene3D G3DSA:3.40.50.720 1 329 4.6E-72 T 31-10-2018 Y89_4847 91edd6774f8b9cfeb803151ed8b58082 329 SUPERFAMILY SSF51735 1 327 1.33E-68 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_6222 dc345c349d02eaa2f601eac17913cd50 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 9.0E-17 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y89_6222 dc345c349d02eaa2f601eac17913cd50 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 21.504 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y89_6222 dc345c349d02eaa2f601eac17913cd50 53 PIRSF PIRSF036466 1 53 5.3E-24 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Y89_0372 83f1e4ce7ae6c2932efcb4473f12de7f 157 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 9 152 2.3E-24 T 31-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Y89_0372 83f1e4ce7ae6c2932efcb4473f12de7f 157 SUPERFAMILY SSF56300 8 157 5.29E-35 T 31-10-2018 Y89_0372 83f1e4ce7ae6c2932efcb4473f12de7f 157 Gene3D G3DSA:3.60.21.10 8 157 3.6E-31 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like Y89_0372 83f1e4ce7ae6c2932efcb4473f12de7f 157 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 9 145 2.7E-31 T 31-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Y89_0372 83f1e4ce7ae6c2932efcb4473f12de7f 157 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 103 127 - T 31-10-2018 IPR020935 Phosphodiesterase YfcE, conserved site Y89_4713 949f5ca554df753d1690952945023de7 268 Pfam PF14335 Domain of unknown function (DUF4391) 13 259 6.8E-82 T 31-10-2018 IPR025503 Protein of unknown function DUF4391 Y89_5143 d08a753b2669f656320cc0cd04558a6a 111 Pfam PF05717 IS66 Orf2 like protein 6 102 5.6E-28 T 31-10-2018 IPR008878 Transposase IS66, Orf2 Y89_5255 540af7e72bd4000030403f6cd4d555f4 157 Gene3D G3DSA:2.60.120.10 35 126 2.1E-6 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_5255 540af7e72bd4000030403f6cd4d555f4 157 SUPERFAMILY SSF51182 21 125 1.18E-11 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_5255 540af7e72bd4000030403f6cd4d555f4 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 7 138 3.5E-44 T 31-10-2018 IPR027565 Cupin fold metalloprotein, WbuC family Y89_5535 676f8c165df76ff832e6db4e58a22f2d 172 Pfam PF13420 Acetyltransferase (GNAT) domain 5 157 8.7E-22 T 31-10-2018 Y89_5535 676f8c165df76ff832e6db4e58a22f2d 172 SUPERFAMILY SSF55729 5 169 2.74E-35 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5535 676f8c165df76ff832e6db4e58a22f2d 172 Gene3D G3DSA:3.40.630.30 1 172 9.8E-56 T 31-10-2018 Y89_2623 496b3bd28b6ff3853accd2ab37a549bb 141 Pfam PF07849 Protein of unknown function (DUF1641) 95 128 2.4E-9 T 31-10-2018 IPR012440 Protein of unknown function DUF1641 Y89_3961 fa1397b0dbf915e3c3dc218d799100c5 242 Gene3D G3DSA:3.90.550.10 28 218 7.9E-12 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_3961 fa1397b0dbf915e3c3dc218d799100c5 242 Pfam PF00535 Glycosyl transferase family 2 42 122 2.1E-5 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Y89_3961 fa1397b0dbf915e3c3dc218d799100c5 242 SUPERFAMILY SSF53448 38 217 1.31E-12 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_5505 c8236681fc25efd456fa499fea936832 263 Gene3D G3DSA:3.40.50.150 31 258 6.1E-33 T 31-10-2018 Y89_5505 c8236681fc25efd456fa499fea936832 263 Pfam PF03059 Nicotianamine synthase protein 118 246 7.8E-12 T 31-10-2018 IPR004298 Nicotianamine synthase GO:0030410|GO:0030418 MetaCyc: PWY-5912|MetaCyc: PWY-5957 Y89_5505 c8236681fc25efd456fa499fea936832 263 SUPERFAMILY SSF53335 111 220 9.3E-10 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_3248 6c0d94569a74ee15b258c989be1d5a9d 412 Pfam PF04233 Phage Mu protein F like protein 53 169 3.1E-17 T 31-10-2018 IPR006528 Phage head morphogenesis domain Y89_0829 8b137638b8230d956de4e7b73dc99bd8 234 SUPERFAMILY SSF161098 23 210 1.27E-42 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0829 8b137638b8230d956de4e7b73dc99bd8 234 Gene3D G3DSA:1.10.3720.10 17 226 2.6E-51 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0829 8b137638b8230d956de4e7b73dc99bd8 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 224 2.5E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0829 8b137638b8230d956de4e7b73dc99bd8 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 118 1.5E-25 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_0093 a0c8fc5bd00646490e62458c1fb6d04d 172 PIRSF PIRSF028301 3 172 9.4E-59 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_0093 a0c8fc5bd00646490e62458c1fb6d04d 172 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 163 4.4E-56 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_0093 a0c8fc5bd00646490e62458c1fb6d04d 172 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 162 4.5E-58 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 Y89_2112 4b78f5df730c93f1fd628929453c41c1 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 2 185 24.996 T 31-10-2018 IPR022929 Putative manganese efflux pump MntP Y89_2112 4b78f5df730c93f1fd628929453c41c1 189 Pfam PF02659 Putative manganese efflux pump 31 182 1.0E-52 T 31-10-2018 IPR003810 Putative manganese efflux pump Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 Gene3D G3DSA:3.40.630.10 85 483 4.4E-79 T 31-10-2018 Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 Gene3D G3DSA:3.50.30.30 126 267 4.4E-79 T 31-10-2018 Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 Pfam PF02225 PA domain 155 253 3.8E-17 T 31-10-2018 IPR003137 PA domain Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 SUPERFAMILY SSF53187 70 495 1.0E-62 T 31-10-2018 Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 SUPERFAMILY SSF52025 117 239 3.79E-15 T 31-10-2018 Y89_2082 fb2fe05223b82235c6eaaa5856894ab0 536 Pfam PF04389 Peptidase family M28 277 489 9.3E-46 T 31-10-2018 IPR007484 Peptidase M28 Y89_0876 87f714d9f9794f235d8ec76ceb73a7e4 203 Pfam PF01810 LysE type translocator 14 195 7.6E-17 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_2490 4b557ec498663f27e4dbb8110c4aaf81 360 Pfam PF00296 Luciferase-like monooxygenase 21 322 1.5E-76 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Y89_2490 4b557ec498663f27e4dbb8110c4aaf81 360 Gene3D G3DSA:3.20.20.30 9 359 4.7E-103 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_2490 4b557ec498663f27e4dbb8110c4aaf81 360 SUPERFAMILY SSF51679 12 350 2.62E-80 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Y89_3193 321ba17bdca0545a686ea8a4e068bac8 213 TIGRFAM TIGR03035 trp_arylform: arylformamidase 5 209 1.0E-103 T 31-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y89_3193 321ba17bdca0545a686ea8a4e068bac8 213 Hamap MF_01969 Kynurenine formamidase [kynB]. 5 209 44.812 T 31-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y89_3193 321ba17bdca0545a686ea8a4e068bac8 213 Gene3D G3DSA:3.50.30.50 1 213 1.9E-80 T 31-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y89_3193 321ba17bdca0545a686ea8a4e068bac8 213 SUPERFAMILY SSF102198 4 207 4.05E-59 T 31-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y89_3193 321ba17bdca0545a686ea8a4e068bac8 213 Pfam PF04199 Putative cyclase 8 152 1.7E-17 T 31-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Y89_2326 364c4477411165bd087237167f3cf814 659 Pfam PF11843 Protein of unknown function (DUF3363) 286 657 9.5E-143 T 31-10-2018 IPR021795 Protein of unknown function DUF3363 Y89_1198 34d593df41a0579ed2b519c2551bf28a 372 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 353 1.1E-118 T 31-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 Y89_1198 34d593df41a0579ed2b519c2551bf28a 372 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 352 1.9E-73 T 31-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Y89_3905 2dfc1cc7b7ee806a38642a606442c95d 237 Gene3D G3DSA:3.10.620.30 35 231 3.4E-81 T 31-10-2018 Y89_3905 2dfc1cc7b7ee806a38642a606442c95d 237 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 74 181 1.7E-17 T 31-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted Y89_3905 2dfc1cc7b7ee806a38642a606442c95d 237 SUPERFAMILY SSF54001 71 137 8.83E-7 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_0178 203e6bd9a5690bb48a6ed8be9647145d 468 TIGRFAM TIGR03173 pbuX: xanthine permease 28 443 2.6E-128 T 31-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 Y89_0178 203e6bd9a5690bb48a6ed8be9647145d 468 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 359 379 - T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_0178 203e6bd9a5690bb48a6ed8be9647145d 468 Pfam PF00860 Permease family 25 410 2.0E-85 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_0178 203e6bd9a5690bb48a6ed8be9647145d 468 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 23 441 2.3E-112 T 31-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Y89_0214 95da3f361c07ecbd5d07f340cbc0582f 193 Pfam PF06821 Serine hydrolase 8 178 6.8E-69 T 31-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 Y89_0214 95da3f361c07ecbd5d07f340cbc0582f 193 SUPERFAMILY SSF53474 8 180 4.2E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0214 95da3f361c07ecbd5d07f340cbc0582f 193 Gene3D G3DSA:3.40.50.1820 1 187 2.1E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0955 4bc77384675cf0a67f1b5bbf8a50fd8e 294 Gene3D G3DSA:3.40.50.720 6 277 1.6E-46 T 31-10-2018 Y89_0955 4bc77384675cf0a67f1b5bbf8a50fd8e 294 Gene3D G3DSA:3.90.25.10 160 283 1.6E-46 T 31-10-2018 Y89_0955 4bc77384675cf0a67f1b5bbf8a50fd8e 294 SUPERFAMILY SSF51735 3 291 2.63E-51 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_0955 4bc77384675cf0a67f1b5bbf8a50fd8e 294 Pfam PF04321 RmlD substrate binding domain 3 290 2.1E-79 T 31-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Y89_4637 12cf50f9cd818e84e97ae57c7a259f70 542 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 28 290 1.6E-122 T 31-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Y89_4637 12cf50f9cd818e84e97ae57c7a259f70 542 SUPERFAMILY SSF110849 37 159 2.54E-10 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Y89_4702 c605aee9069338e5392c3c09b88fb9c4 202 SUPERFAMILY SSF55729 9 155 2.62E-26 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4702 c605aee9069338e5392c3c09b88fb9c4 202 Pfam PF00583 Acetyltransferase (GNAT) family 31 143 6.0E-14 T 31-10-2018 IPR000182 GNAT domain Y89_4702 c605aee9069338e5392c3c09b88fb9c4 202 Gene3D G3DSA:3.40.630.30 3 154 2.1E-32 T 31-10-2018 Y89_5200 7aa0dbba85fde10263cbba04a8a0f324 397 Pfam PF02687 FtsX-like permease family 302 390 2.6E-10 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Y89_5200 7aa0dbba85fde10263cbba04a8a0f324 397 Pfam PF12704 MacB-like periplasmic core domain 25 239 2.6E-21 T 31-10-2018 IPR025857 MacB-like periplasmic core domain Y89_5500 09128be4b532e280d8754f975a8c115c 186 SUPERFAMILY SSF48498 80 180 3.61E-21 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_5500 09128be4b532e280d8754f975a8c115c 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 4.0E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5500 09128be4b532e280d8754f975a8c115c 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 4.0E-7 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5500 09128be4b532e280d8754f975a8c115c 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 1.1E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5500 09128be4b532e280d8754f975a8c115c 186 Gene3D G3DSA:1.10.10.60 5 51 1.3E-18 T 31-10-2018 Y89_5500 09128be4b532e280d8754f975a8c115c 186 SUPERFAMILY SSF46689 1 72 1.49E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_5500 09128be4b532e280d8754f975a8c115c 186 Gene3D G3DSA:1.10.357.10 52 180 6.6E-30 T 31-10-2018 Y89_2299 6a8decca8126bfc6eabb7ddaa160208d 287 Pfam PF12697 Alpha/beta hydrolase family 26 268 1.8E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_2299 6a8decca8126bfc6eabb7ddaa160208d 287 Gene3D G3DSA:3.40.50.1820 4 280 1.4E-46 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2299 6a8decca8126bfc6eabb7ddaa160208d 287 SUPERFAMILY SSF53474 7 277 1.0E-48 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 SUPERFAMILY SSF56024 22 394 3.34E-27 T 31-10-2018 Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 SMART SM00155 300 331 7.0 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 SMART SM00155 637 664 0.009 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 Gene3D G3DSA:3.30.870.10 37 159 3.2E-7 T 31-10-2018 Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 Gene3D G3DSA:3.30.870.10 228 400 1.8E-12 T 31-10-2018 Y89_5760 8a89c0f7ee3903b9579dfb9fd081d558 744 SUPERFAMILY SSF56024 372 695 1.59E-16 T 31-10-2018 Y89_5092 743ef97531afbaeaff557afab4fb0c1a 459 Pfam PF04917 Bacterial shufflon protein, N-terminal constant region 36 346 2.1E-81 T 31-10-2018 IPR007001 Bacterial shufflon protein, N-terminal Y89_0440 a990a0d9b2948670358403517432df7d 203 Pfam PF01810 LysE type translocator 14 199 1.3E-51 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_1488 44155fa432736100f4984d4d3536e428 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.665 T 31-10-2018 IPR005583 Peroxide stress protein YaaA Y89_1488 44155fa432736100f4984d4d3536e428 259 Pfam PF03883 Peroxide stress protein YaaA 1 243 4.6E-90 T 31-10-2018 IPR005583 Peroxide stress protein YaaA Y89_0005 c4930216aea210f4c7b0ddbc15ee1fa7 102 Gene3D G3DSA:1.10.10.60 9 93 5.2E-12 T 31-10-2018 Y89_0005 c4930216aea210f4c7b0ddbc15ee1fa7 102 Pfam PF01527 Transposase 3 76 7.4E-21 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_0005 c4930216aea210f4c7b0ddbc15ee1fa7 102 SUPERFAMILY SSF46689 5 95 6.09E-19 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4736 ba116f73e8f8f6bd21c55662e1935c8f 159 Pfam PF10722 Putative bacterial sensory transduction regulator 11 135 5.4E-17 T 31-10-2018 IPR019660 Putative sensory transduction regulator YbjN Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 183 3.5E-23 T 31-10-2018 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 Gene3D G3DSA:1.10.150.240 20 85 2.4E-54 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 183 5.0E-17 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 Gene3D G3DSA:3.40.50.1000 9 203 2.4E-54 T 31-10-2018 IPR023214 HAD superfamily Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 1.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 1.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 1.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Y89_0583 866e7cf6756a0fa15487c02ac06f919f 231 SUPERFAMILY SSF56784 4 217 1.5E-50 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4749 45b3b6f57a1762bd108c7362f659f41b 197 Pfam PF04612 Type II secretion system (T2SS), protein M 24 190 2.9E-47 T 31-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 Y89_4311 91629e77563827d708fc51c94f9cb792 154 Pfam PF05425 Copper resistance protein D 48 150 3.3E-19 T 31-10-2018 IPR008457 Copper resistance protein D GO:0016021 Y89_5072 35a8ab29517d8627cd382de7237202c7 255 Pfam PF11198 Protein of unknown function (DUF2857) 7 190 2.6E-46 T 31-10-2018 IPR021364 Protein of unknown function DUF2857 Y89_6280 5e8120becc8d6b3be41c5f59cbe08a4f 186 Gene3D G3DSA:2.160.10.10 1 182 1.3E-47 T 31-10-2018 Y89_6280 5e8120becc8d6b3be41c5f59cbe08a4f 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 44 4.6E-4 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_6280 5e8120becc8d6b3be41c5f59cbe08a4f 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 1.9E-6 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_6280 5e8120becc8d6b3be41c5f59cbe08a4f 186 SUPERFAMILY SSF51161 8 139 1.52E-31 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_4318 5bea338b0b8865b0c64ebeeca5032ff6 206 Pfam PF03458 UPF0126 domain 5 79 6.1E-20 T 31-10-2018 IPR005115 Uncharacterised domain UPF0126 Y89_4318 5bea338b0b8865b0c64ebeeca5032ff6 206 Pfam PF03458 UPF0126 domain 91 163 1.2E-21 T 31-10-2018 IPR005115 Uncharacterised domain UPF0126 Y89_2839 55fca4b62e52e3b313b10e5c5c0f5ff3 1271 Pfam PF14331 ImcF-related N-terminal domain 115 352 1.1E-48 T 31-10-2018 IPR025743 ImcF-related, N-terminal domain Y89_2292 d77b16a9ff5911ae55b90e7a61e49f24 73 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 2 63 6.7E-25 T 31-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system Y89_5973 d6de36357cd49ed9d53627a1f9f194da 304 Pfam PF00419 Fimbrial protein 159 304 3.3E-13 T 31-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 Y89_5973 d6de36357cd49ed9d53627a1f9f194da 304 SUPERFAMILY SSF49401 168 304 7.95E-20 T 31-10-2018 IPR008966 Adhesion domain superfamily Y89_5973 d6de36357cd49ed9d53627a1f9f194da 304 Gene3D G3DSA:2.60.40.1090 156 303 5.5E-23 T 31-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 Y89_3158 84bfaf4cca413ca43a19725256b4c520 375 Gene3D G3DSA:3.30.530.20 222 373 1.0E-17 T 31-10-2018 IPR023393 START-like domain superfamily Y89_3158 84bfaf4cca413ca43a19725256b4c520 375 SUPERFAMILY SSF55961 223 368 2.17E-18 T 31-10-2018 Y89_3158 84bfaf4cca413ca43a19725256b4c520 375 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 223 366 4.2E-23 T 31-10-2018 IPR019587 Polyketide cyclase/dehydrase Y89_3158 84bfaf4cca413ca43a19725256b4c520 375 Pfam PF04116 Fatty acid hydroxylase superfamily 57 210 1.5E-10 T 31-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Y89_4009 60293dc89d75d72e2b25aceb0c580834 248 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 131 1.0E-17 T 31-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Y89_4009 60293dc89d75d72e2b25aceb0c580834 248 SUPERFAMILY SSF161098 24 223 7.59E-42 T 31-10-2018 IPR035906 MetI-like superfamily Y89_4009 60293dc89d75d72e2b25aceb0c580834 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 238 6.4E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_4009 60293dc89d75d72e2b25aceb0c580834 248 Gene3D G3DSA:1.10.3720.10 18 239 3.2E-48 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3489 8b7aa5c71418c67a539e4241b00bd543 75 Pfam PF11174 Protein of unknown function (DUF2970) 15 70 3.0E-25 T 31-10-2018 IPR021344 Protein of unknown function DUF2970 Y89_4630 692f23fbce9f418116d4785f6112dfa4 245 Pfam PF13645 L,D-transpeptidase catalytic domain 44 210 1.1E-63 T 31-10-2018 IPR032676 Putative L,D-transpeptidase tautomerase Y89_4634 aaee73a23dd862982873443ca87eace9 70 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 12 62 3.5E-25 T 31-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Y89_0616 43f498d55588bc71a27b123a10cc7d17 390 Pfam PF04865 Baseplate J-like protein 79 331 7.2E-30 T 31-10-2018 IPR006949 Baseplate protein J-like Y89_0332 c59a8eb0c3572d5cfa8eeb2f8afad95f 164 Pfam PF04463 Protein of unknown function (DUF523) 4 149 8.2E-40 T 31-10-2018 IPR007553 Domain of unknown function DUF523 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 Pfam PF00067 Cytochrome P450 267 368 1.1E-13 T 31-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 271 282 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 347 358 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 137 153 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 289 316 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 91 102 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 338 347 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 190 212 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 154 169 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 PRINTS PR00359 B-class P450 signature 317 332 5.7E-51 T 31-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 Gene3D G3DSA:1.10.630.10 7 410 4.4E-124 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_1678 97c0db66c7cd5493ec6dd4879203143b 418 SUPERFAMILY SSF48264 27 397 5.63E-91 T 31-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Y89_0803 9ff1d2a05e7f198dc2916291de182a41 501 Pfam PF03929 PepSY-associated TM region 9 360 6.2E-38 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_5215 9f980f1efc36de66b5490c66a7dfd718 168 Pfam PF11220 Protein of unknown function (DUF3015) 24 163 3.7E-54 T 31-10-2018 IPR021383 Protein of unknown function DUF3015 Y89_3696 2228e6710a81ac271c308b098217ecf0 201 Pfam PF16233 Domain of unknown function (DUF4893) 67 176 8.9E-22 T 31-10-2018 IPR032609 Protein of unknown function DUF4893 Y89_2229 32ca18514bf0a173d37dfe0379732cf8 234 Pfam PF04333 MlaA lipoprotein 34 223 2.4E-77 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_2229 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 103 120 4.5E-28 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_2229 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 35 48 4.5E-28 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_2229 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 139 156 4.5E-28 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_2229 32ca18514bf0a173d37dfe0379732cf8 234 PRINTS PR01805 VacJ lipoprotein signature 52 68 4.5E-28 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Y89_4893 a9dfe95ec4945867172e68c219f2e6b9 307 Gene3D G3DSA:2.70.70.10 147 304 1.1E-46 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_4893 a9dfe95ec4945867172e68c219f2e6b9 307 Pfam PF01551 Peptidase family M23 202 296 6.1E-32 T 31-10-2018 IPR016047 Peptidase M23 Y89_4893 a9dfe95ec4945867172e68c219f2e6b9 307 SUPERFAMILY SSF51261 94 300 3.3E-56 T 31-10-2018 IPR011055 Duplicated hybrid motif Y89_5048 7d5954ee95faf60c6e93791c24435f47 56 Pfam PF11293 Protein of unknown function (DUF3094) 2 56 1.6E-35 T 31-10-2018 IPR021444 Protein of unknown function DUF3094 Y89_3973 496df47efb096d2b86794b1ae4ef487d 577 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 10 566 0.0 T 31-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y89_3973 496df47efb096d2b86794b1ae4ef487d 577 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 10 569 1.3E-240 T 31-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y89_3973 496df47efb096d2b86794b1ae4ef487d 577 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 2 573 44.549 T 31-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y89_3973 496df47efb096d2b86794b1ae4ef487d 577 PIRSF PIRSF000719 1 577 3.9E-300 T 31-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Y89_0817 841268a6dd88a80b841889461e125ddd 148 Pfam PF07681 DoxX 15 95 2.6E-15 T 31-10-2018 IPR032808 DoxX family Y89_0209 947f5aad2cd3bd2b2cabd967fb434c82 478 Gene3D G3DSA:3.40.50.1220 300 478 1.8E-83 T 31-10-2018 Y89_0209 947f5aad2cd3bd2b2cabd967fb434c82 478 PIRSF PIRSF000204 1 478 1.9E-217 T 31-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 Y89_0209 947f5aad2cd3bd2b2cabd967fb434c82 478 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 475 3.6E-191 T 31-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Y89_0209 947f5aad2cd3bd2b2cabd967fb434c82 478 SUPERFAMILY SSF52467 306 478 6.27E-75 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 SUPERFAMILY SSF55681 10 291 1.57E-136 T 31-10-2018 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 Gene3D G3DSA:3.30.930.10 2 216 8.9E-113 T 31-10-2018 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 1.7E-152 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 Gene3D G3DSA:1.20.58.180 217 298 2.3E-33 T 31-10-2018 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.9E-69 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.704 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_0015 9c5e64ae51abacc04b9793a3ffdb9532 315 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 1.6E-162 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Y89_2139 a1f364f02a756a38f507ced69a42393f 55 Pfam PF11446 Protein of unknown function (DUF2897) 1 52 2.0E-25 T 31-10-2018 IPR021550 Protein of unknown function DUF2897 Y89_2392 30b8d81d0b1675adccc1466fc1e0c2a3 367 Pfam PF07759 Protein of unknown function (DUF1615) 49 363 1.3E-147 T 31-10-2018 IPR011673 Protein of unknown function DUF1615 Y89_2392 30b8d81d0b1675adccc1466fc1e0c2a3 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 14 363 0.0 T 31-10-2018 IPR011673 Protein of unknown function DUF1615 Y89_3216 75432ddd8871ebf44aca83efaa917ffe 357 Gene3D G3DSA:1.10.3720.10 113 345 7.0E-17 T 31-10-2018 IPR035906 MetI-like superfamily Y89_3216 75432ddd8871ebf44aca83efaa917ffe 357 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 143 350 8.7E-34 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_3216 75432ddd8871ebf44aca83efaa917ffe 357 SUPERFAMILY SSF161098 120 334 4.58E-13 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0295 7f74e30d601f9497151c1a41869c573d 252 Pfam PF01435 Peptidase family M48 73 246 2.5E-25 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_0295 7f74e30d601f9497151c1a41869c573d 252 Gene3D G3DSA:3.30.2010.10 61 147 1.9E-8 T 31-10-2018 Y89_5272 493af5a9a733defef804ddba05a91153 173 Gene3D G3DSA:2.40.160.20 24 173 2.0E-62 T 31-10-2018 Y89_5272 493af5a9a733defef804ddba05a91153 173 PIRSF PIRSF029681 1 173 1.2E-53 T 31-10-2018 IPR018550 Lipid A 3-O-deacylase-related Y89_5272 493af5a9a733defef804ddba05a91153 173 SUPERFAMILY SSF56925 33 148 8.89E-6 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Y89_5272 493af5a9a733defef804ddba05a91153 173 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 37 171 1.8E-41 T 31-10-2018 IPR018550 Lipid A 3-O-deacylase-related Y89_2717 070842849ebf986bca6cbf2194bdbd6b 204 Gene3D G3DSA:1.10.10.60 1 70 9.7E-24 T 31-10-2018 Y89_2717 070842849ebf986bca6cbf2194bdbd6b 204 SUPERFAMILY SSF46689 2 70 9.23E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_2717 070842849ebf986bca6cbf2194bdbd6b 204 Gene3D G3DSA:1.10.357.10 71 198 2.1E-33 T 31-10-2018 Y89_2717 070842849ebf986bca6cbf2194bdbd6b 204 SUPERFAMILY SSF48498 81 195 4.79E-27 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Y89_2717 070842849ebf986bca6cbf2194bdbd6b 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 9.8E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Y89_5379 3917a67786cac8d716c9a28719376cb3 144 SUPERFAMILY SSF55961 1 144 3.14E-35 T 31-10-2018 Y89_5379 3917a67786cac8d716c9a28719376cb3 144 Gene3D G3DSA:3.30.530.20 3 144 2.7E-41 T 31-10-2018 IPR023393 START-like domain superfamily Y89_5379 3917a67786cac8d716c9a28719376cb3 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 135 8.6E-35 T 31-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 Y89_3041 b3c973e2ddb0a41710c856134c9c691c 295 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 23 221 3.0E-40 T 31-10-2018 IPR008775 Phytanoyl-CoA dioxygenase Y89_3041 b3c973e2ddb0a41710c856134c9c691c 295 Gene3D G3DSA:2.60.120.620 1 282 2.0E-84 T 31-10-2018 Y89_3041 b3c973e2ddb0a41710c856134c9c691c 295 SUPERFAMILY SSF51197 17 262 5.68E-46 T 31-10-2018 Y89_2085 c0f67e07e9f427bc80c74d5c45878d08 193 SUPERFAMILY SSF81342 5 190 4.55E-22 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_2085 c0f67e07e9f427bc80c74d5c45878d08 193 Pfam PF01292 Prokaryotic cytochrome b561 7 188 4.7E-25 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_4625 09b8bc640ba52ffd9077260caf6d3c53 358 Pfam PF09925 Predicted membrane protein (DUF2157) 52 181 1.6E-15 T 31-10-2018 IPR018677 Domain of unknown function DUF2157 Y89_4496 b51740608c3175659e87b24df3f67bb0 57 Pfam PF07235 Protein of unknown function (DUF1427) 2 53 1.6E-22 T 31-10-2018 IPR009872 Protein of unknown function DUF1427 Y89_4496 b51740608c3175659e87b24df3f67bb0 57 TIGRFAM TIGR03510 XapX: XapX domain 2 48 6.0E-21 T 31-10-2018 IPR020017 XapX domain Y89_0920 acb9432348542e8bc3c758f6638223bc 209 Pfam PF01794 Ferric reductase like transmembrane component 52 161 3.3E-7 T 31-10-2018 IPR013130 Ferric reductase transmembrane component-like domain Y89_4706 137933a3588eb9be0bfa3a93ad0282eb 116 Pfam PF02411 MerT mercuric transport protein 1 116 6.3E-62 T 31-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 Y89_4851 7a47e2274047e77e782c39d110faf632 200 Pfam PF01810 LysE type translocator 15 198 4.8E-42 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_3853 ec8cdbc833e756d36699ab3e1d6bdf7c 455 Pfam PF13520 Amino acid permease 15 423 5.0E-36 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3853 ec8cdbc833e756d36699ab3e1d6bdf7c 455 PIRSF PIRSF006060 1 453 1.4E-55 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Y89_3853 ec8cdbc833e756d36699ab3e1d6bdf7c 455 Gene3D G3DSA:1.20.1740.10 10 452 4.3E-54 T 31-10-2018 Y89_1351 4a234ec2fbe5b26796683d5b5c898838 226 Pfam PF13852 Protein of unknown function (DUF4197) 25 223 3.5E-76 T 31-10-2018 IPR025245 Protein of unknown function DUF4197 Y89_3718 afaba40657cf1a3316b80859aee3a755 555 Gene3D G3DSA:3.40.50.12780 4 421 7.3E-91 T 31-10-2018 Y89_3718 afaba40657cf1a3316b80859aee3a755 555 Pfam PF00501 AMP-binding enzyme 12 428 1.2E-90 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_3718 afaba40657cf1a3316b80859aee3a755 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_3718 afaba40657cf1a3316b80859aee3a755 555 SUPERFAMILY SSF56801 8 540 8.37E-113 T 31-10-2018 Y89_4790 09d14d460c405e68491a1574383ae284 72 Pfam PF04964 Flp/Fap pilin component 15 63 7.0E-16 T 31-10-2018 IPR007047 Flp/Fap pilin component Y89_3912 fe65b76502b1d2e135b58fa66bffadab 471 Pfam PF13372 Alginate export 77 462 4.8E-82 T 31-10-2018 IPR025388 Alginate export domain Y89_4441 1b504dec2f721e0c59ea8f51509d078b 182 SUPERFAMILY SSF81342 4 179 1.26E-37 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Y89_4441 1b504dec2f721e0c59ea8f51509d078b 182 Pfam PF01292 Prokaryotic cytochrome b561 9 179 7.3E-25 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Y89_4324 86dd3dab34fdba15d81cd65399604d05 491 Pfam PF02646 RmuC family 174 470 3.7E-107 T 31-10-2018 IPR003798 DNA recombination RmuC Y89_1300 d765a61ebec6fb470dd37afd1ee6882b 688 SUPERFAMILY SSF117892 60 208 2.75E-9 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily Y89_3889 24a001404e80adc4fdcc15fb6cdeedf7 419 Gene3D G3DSA:3.10.310.50 31 176 2.4E-48 T 31-10-2018 Y89_3889 24a001404e80adc4fdcc15fb6cdeedf7 419 Pfam PF04536 TPM domain 45 168 7.5E-38 T 31-10-2018 IPR007621 TPM domain Y89_6391 17f8d7fdbf8f5d45fc22817a698831ac 118 Pfam PF11190 Protein of unknown function (DUF2976) 31 117 2.6E-28 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_6391 17f8d7fdbf8f5d45fc22817a698831ac 118 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 16 118 1.7E-42 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_5121 17f8d7fdbf8f5d45fc22817a698831ac 118 Pfam PF11190 Protein of unknown function (DUF2976) 31 117 2.6E-28 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_5121 17f8d7fdbf8f5d45fc22817a698831ac 118 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 16 118 1.7E-42 T 31-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Y89_5912 e87051ccad25d4ee158ab5ee9fe2db24 165 Gene3D G3DSA:1.20.120.740 1 159 1.1E-48 T 31-10-2018 Y89_5912 e87051ccad25d4ee158ab5ee9fe2db24 165 Pfam PF03695 Uncharacterised protein family (UPF0149) 2 153 9.3E-29 T 31-10-2018 IPR011978 Uncharacterised protein family UPF0149 Y89_5912 e87051ccad25d4ee158ab5ee9fe2db24 165 SUPERFAMILY SSF101327 2 152 7.85E-38 T 31-10-2018 IPR036255 YgfB-like superfamily Y89_3844 9ec5aaf7b303a2e1666199ced56b6f32 551 Pfam PF13600 N-terminal domain of unknown function (DUF4140) 34 133 7.9E-23 T 31-10-2018 IPR025554 Domain of unknown function DUF4140 Y89_3844 9ec5aaf7b303a2e1666199ced56b6f32 551 Pfam PF13598 Domain of unknown function (DUF4139) 221 543 2.0E-64 T 31-10-2018 IPR037291 Domain of unknown function DUF4139 Y89_3844 9ec5aaf7b303a2e1666199ced56b6f32 551 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 30 547 4.5E-207 T 31-10-2018 IPR011935 Conserved hypothetical protein CHP02231 Y89_5126 e9380fe0e1c74d110ee768f2d27e741c 147 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 17 144 6.7E-55 T 31-10-2018 IPR022262 Lipoprotein, putative Y89_5333 6b4e98327eb99553c4bbd656ca75c4a4 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 5 233 3.6E-64 T 31-10-2018 IPR005224 Sugar fermentation stimulation protein Y89_5333 6b4e98327eb99553c4bbd656ca75c4a4 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 235 56.604 T 31-10-2018 IPR005224 Sugar fermentation stimulation protein Y89_5333 6b4e98327eb99553c4bbd656ca75c4a4 235 Gene3D G3DSA:2.40.50.580 1 80 4.3E-28 T 31-10-2018 Y89_5333 6b4e98327eb99553c4bbd656ca75c4a4 235 Pfam PF03749 Sugar fermentation stimulation protein 13 226 2.5E-72 T 31-10-2018 IPR005224 Sugar fermentation stimulation protein Y89_5333 6b4e98327eb99553c4bbd656ca75c4a4 235 Gene3D G3DSA:3.40.1350.60 81 235 5.2E-52 T 31-10-2018 Y89_4123 a798d52ca1ce288cab75ef45eaffc6b9 62 Pfam PF07869 Protein of unknown function (DUF1656) 4 56 2.2E-11 T 31-10-2018 IPR012451 Protein of unknown function DUF1656 Y89_5543 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 23 55 1.1E-19 T 31-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y89_5543 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 65 97 6.6E-20 T 31-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y89_5543 da40b9755dcc6e15498110527127b2ac 138 Pfam PF07769 psiF repeat 105 137 7.8E-20 T 31-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Y89_3396 21dcecb93ff72b9dd1db70ed9e426689 108 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 14 101 2.9E-26 T 31-10-2018 IPR018676 Protein of unknown function DUF2149 Y89_1680 efca694d0881a3a69f3afc9f58dcd939 441 SUPERFAMILY SSF52777 6 156 9.64E-23 T 31-10-2018 Y89_1680 efca694d0881a3a69f3afc9f58dcd939 441 Pfam PF00668 Condensation domain 219 324 1.8E-5 T 31-10-2018 IPR001242 Condensation domain Y89_1680 efca694d0881a3a69f3afc9f58dcd939 441 Pfam PF00668 Condensation domain 18 144 2.3E-9 T 31-10-2018 IPR001242 Condensation domain Y89_1680 efca694d0881a3a69f3afc9f58dcd939 441 SUPERFAMILY SSF52777 189 433 4.0E-37 T 31-10-2018 Y89_1680 efca694d0881a3a69f3afc9f58dcd939 441 Gene3D G3DSA:3.30.559.10 2 184 2.0E-19 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Y89_1840 881177e5872d19ae8ffbdaf674b6d82e 404 Pfam PF03616 Sodium/glutamate symporter 4 370 2.1E-146 T 31-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Y89_1840 881177e5872d19ae8ffbdaf674b6d82e 404 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 4 403 22.284 T 31-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Y89_1840 881177e5872d19ae8ffbdaf674b6d82e 404 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 5 400 1.2E-99 T 31-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Y89_5165 1bd17f9890f7937001024c2439d3e9e6 146 Gene3D G3DSA:2.40.10.330 76 130 5.7E-22 T 31-10-2018 Y89_5165 1bd17f9890f7937001024c2439d3e9e6 146 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 141 1.4E-23 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Y89_5165 1bd17f9890f7937001024c2439d3e9e6 146 SUPERFAMILY SSF54534 9 143 4.71E-40 T 31-10-2018 Y89_1817 febbbe2800a5b6f5a0d7d709f61417fb 296 Hamap MF_01805 Segregation and condensation protein A [scpA]. 47 277 22.374 T 31-10-2018 IPR003768 Segregation and condensation protein A Y89_1817 febbbe2800a5b6f5a0d7d709f61417fb 296 Pfam PF02616 Segregation and condensation protein ScpA 64 155 7.8E-22 T 31-10-2018 IPR003768 Segregation and condensation protein A Y89_1817 febbbe2800a5b6f5a0d7d709f61417fb 296 Pfam PF02616 Segregation and condensation protein ScpA 206 274 7.6E-8 T 31-10-2018 IPR003768 Segregation and condensation protein A Y89_0304 213b944ae813358969f35b0ce08932a8 392 Pfam PF00487 Fatty acid desaturase 11 214 1.3E-12 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Y89_0304 213b944ae813358969f35b0ce08932a8 392 Pfam PF01610 Transposase 270 387 3.0E-9 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Y89_0256 c0d6c5481cb24099de3640e5dd9397ce 148 Gene3D G3DSA:3.40.630.30 6 147 4.1E-34 T 31-10-2018 Y89_0256 c0d6c5481cb24099de3640e5dd9397ce 148 Pfam PF13508 Acetyltransferase (GNAT) domain 53 126 3.7E-15 T 31-10-2018 IPR000182 GNAT domain Y89_0256 c0d6c5481cb24099de3640e5dd9397ce 148 SUPERFAMILY SSF55729 5 145 9.22E-26 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_5548 a91964361408bdebd44f859c93d1c147 689 Pfam PF05170 AsmA family 1 575 2.3E-182 T 31-10-2018 IPR007844 AsmA Y89_5239 70d02d801e5e7a1da594072eee20ef5f 147 SUPERFAMILY SSF54427 3 141 6.14E-25 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_5239 70d02d801e5e7a1da594072eee20ef5f 147 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 7 135 5.0E-43 T 31-10-2018 IPR011721 Conserved hypothetical protein CHP02096 Y89_5239 70d02d801e5e7a1da594072eee20ef5f 147 Gene3D G3DSA:3.10.450.50 4 142 5.7E-23 T 31-10-2018 Y89_5239 70d02d801e5e7a1da594072eee20ef5f 147 Pfam PF07366 SnoaL-like polyketide cyclase 15 134 1.6E-13 T 31-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 Y89_2971 d17404b64b0b71000e08b243b1b6e7f8 485 Pfam PF01435 Peptidase family M48 285 450 1.2E-11 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Y89_3592 7812b4852fd18f0fa7d2cfadafd15609 332 Gene3D G3DSA:2.120.10.30 34 309 3.2E-15 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Y89_3592 7812b4852fd18f0fa7d2cfadafd15609 332 SUPERFAMILY SSF63829 39 302 5.49E-28 T 31-10-2018 Y89_2647 5f2b7ff3d41d89d085b3688f83063556 210 Pfam PF13508 Acetyltransferase (GNAT) domain 130 186 6.7E-9 T 31-10-2018 IPR000182 GNAT domain Y89_2647 5f2b7ff3d41d89d085b3688f83063556 210 SUPERFAMILY SSF55729 8 199 1.99E-21 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_2647 5f2b7ff3d41d89d085b3688f83063556 210 Gene3D G3DSA:3.40.630.30 7 203 6.4E-27 T 31-10-2018 Y89_5544 faab9f432fdf1dff14e78eae25ed06b7 179 Pfam PF03473 MOSC domain 56 164 4.8E-6 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y89_5544 faab9f432fdf1dff14e78eae25ed06b7 179 Gene3D G3DSA:2.40.33.20 1 178 2.7E-33 T 31-10-2018 Y89_5544 faab9f432fdf1dff14e78eae25ed06b7 179 SUPERFAMILY SSF50800 2 169 1.41E-41 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_1727 80f4a6470d255a0348170725e9fb6c3f 79 Pfam PF13490 Putative zinc-finger 4 38 4.4E-8 T 31-10-2018 IPR027383 Putative zinc-finger Y89_1727 80f4a6470d255a0348170725e9fb6c3f 79 Gene3D G3DSA:1.10.10.1320 7 79 1.9E-6 T 31-10-2018 Y89_3252 02cecb68c7018df992039dba0af92227 100 SUPERFAMILY SSF46785 8 86 4.84E-5 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_2855 3f98a3eca4a29d3fa0f3fc201411d37a 48 Gene3D G3DSA:3.50.50.60 10 48 1.3E-6 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_2855 3f98a3eca4a29d3fa0f3fc201411d37a 48 SUPERFAMILY SSF51905 7 47 4.46E-8 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1105 5b6267eb0e023d157e67737999c14635 160 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 1 155 35.449 T 31-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1105 5b6267eb0e023d157e67737999c14635 160 SUPERFAMILY SSF55040 9 152 3.79E-60 T 31-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1105 5b6267eb0e023d157e67737999c14635 160 Pfam PF01967 MoaC family 13 147 7.6E-56 T 31-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1105 5b6267eb0e023d157e67737999c14635 160 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 2 149 6.4E-70 T 31-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_1105 5b6267eb0e023d157e67737999c14635 160 Gene3D G3DSA:3.30.70.640 1 158 8.8E-69 T 31-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Y89_2511 e2675f4e6b228780acc969175b45201d 287 Pfam PF12834 Phage integrase, N-terminal 2 89 6.1E-26 T 31-10-2018 IPR024457 Putative integrase, N-terminal Y89_2511 e2675f4e6b228780acc969175b45201d 287 Gene3D G3DSA:1.10.443.10 103 286 2.9E-9 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Y89_2511 e2675f4e6b228780acc969175b45201d 287 SUPERFAMILY SSF56349 21 237 3.24E-14 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Y89_2511 e2675f4e6b228780acc969175b45201d 287 Pfam PF12835 Integrase 103 232 8.2E-19 T 31-10-2018 IPR024456 Integrase catalytic domain, putative Y89_4265 aff8e7ac14de714291dab36bb9420a11 200 SUPERFAMILY SSF56784 3 197 1.47E-29 T 31-10-2018 IPR036412 HAD-like superfamily Y89_4265 aff8e7ac14de714291dab36bb9420a11 200 Pfam PF12710 haloacid dehalogenase-like hydrolase 6 161 2.3E-16 T 31-10-2018 Y89_4265 aff8e7ac14de714291dab36bb9420a11 200 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 163 4.9E-35 T 31-10-2018 Y89_4265 aff8e7ac14de714291dab36bb9420a11 200 Gene3D G3DSA:3.40.50.1000 1 188 1.1E-31 T 31-10-2018 IPR023214 HAD superfamily Y89_2331 89554532c8d30e0dd7b824df6e17dda9 229 Gene3D G3DSA:3.40.50.720 1 199 9.5E-46 T 31-10-2018 Y89_2331 89554532c8d30e0dd7b824df6e17dda9 229 SUPERFAMILY SSF51735 1 201 1.1E-37 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_2331 89554532c8d30e0dd7b824df6e17dda9 229 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 92 2.8E-20 T 31-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Y89_3414 9ef563f2cb9c1316e9f67775d20a74c1 383 Pfam PF03929 PepSY-associated TM region 12 360 1.4E-54 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_2343 058882910cb5d081ba98695ea06b5a57 234 Pfam PF04335 VirB8 protein 23 225 3.1E-68 T 31-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 Y89_2343 058882910cb5d081ba98695ea06b5a57 234 SUPERFAMILY SSF54427 95 226 1.1E-26 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_0070 ba238d2768a25703772b3b077a243fc5 77 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 74 3.0E-29 T 31-10-2018 IPR010595 Protein of unknown function DUF1161 Y89_0070 ba238d2768a25703772b3b077a243fc5 77 Pfam PF06649 Protein of unknown function (DUF1161) 24 74 8.9E-25 T 31-10-2018 IPR010595 Protein of unknown function DUF1161 Y89_5802 50f19f1d45ff6f34da6e2ba3ca9318b7 139 SMART SM00450 40 136 5.7E-14 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5802 50f19f1d45ff6f34da6e2ba3ca9318b7 139 Pfam PF00581 Rhodanese-like domain 43 131 4.8E-11 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_5802 50f19f1d45ff6f34da6e2ba3ca9318b7 139 Gene3D G3DSA:3.40.250.10 42 139 5.6E-22 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5802 50f19f1d45ff6f34da6e2ba3ca9318b7 139 SUPERFAMILY SSF52821 16 139 3.27E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_6311 0eb8ab967940dd3adfe88c2de4c77702 312 Pfam PF06834 TraU protein 33 300 8.8E-67 T 31-10-2018 IPR009649 TraU Y89_6311 0eb8ab967940dd3adfe88c2de4c77702 312 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 26 310 5.4E-131 T 31-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 Y89_6344 4cb0dbebedc7038577f0497290b2129b 242 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 10 225 1.1E-92 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_6344 4cb0dbebedc7038577f0497290b2129b 242 Pfam PF08900 Domain of unknown function (DUF1845) 8 222 2.0E-79 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_2885 3ae7c3ff2616010f6b563081185da706 492 Pfam PF06074 Protein of unknown function (DUF935) 51 480 1.2E-79 T 31-10-2018 IPR009279 Protein of unknown function DUF935 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 32 50 1.4E-43 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 59 81 1.4E-43 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 13 32 1.4E-43 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 PRINTS PR01837 MgtC/SapB protein signature 86 110 1.4E-43 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 Pfam PF02308 MgtC family 11 131 5.2E-35 T 31-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Y89_5244 0982c3fa320b4deb51c49e142c3fe78c 234 Gene3D G3DSA:3.30.70.260 142 234 1.6E-21 T 31-10-2018 Y89_4858 8505a49975119ebe57e131b52ba55277 473 SUPERFAMILY SSF46626 330 473 3.58E-26 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_4858 8505a49975119ebe57e131b52ba55277 473 PIRSF PIRSF028099 3 473 1.2E-190 T 31-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Y89_4858 8505a49975119ebe57e131b52ba55277 473 Gene3D G3DSA:1.10.760.10 331 473 6.5E-9 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_4858 8505a49975119ebe57e131b52ba55277 473 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 36 473 2.9E-140 T 31-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Y89_0734 991801eac1b9dac0c5a238412e696293 140 Pfam PF03653 Uncharacterised protein family (UPF0093) 1 140 1.8E-56 T 31-10-2018 IPR005265 Uncharacterised protein family UPF0093 Y89_0734 991801eac1b9dac0c5a238412e696293 140 PIRSF PIRSF004638 1 140 1.3E-61 T 31-10-2018 IPR005265 Uncharacterised protein family UPF0093 Y89_0734 991801eac1b9dac0c5a238412e696293 140 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 2 140 2.4E-49 T 31-10-2018 IPR005265 Uncharacterised protein family UPF0093 Y89_2320 7f0cac413362324d8738818672d76e01 93 SUPERFAMILY SSF46955 21 77 2.01E-8 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_2320 7f0cac413362324d8738818672d76e01 93 Pfam PF12728 Helix-turn-helix domain 22 72 2.8E-10 T 31-10-2018 Y89_6286 199e2d9fdb518c3a88a85bf60a4377f5 394 Pfam PF02353 Mycolic acid cyclopropane synthetase 98 372 3.5E-106 T 31-10-2018 Y89_6286 199e2d9fdb518c3a88a85bf60a4377f5 394 SUPERFAMILY SSF53335 109 377 1.21E-85 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_6286 199e2d9fdb518c3a88a85bf60a4377f5 394 PIRSF PIRSF003085 1 394 9.8E-130 T 31-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 Y89_6286 199e2d9fdb518c3a88a85bf60a4377f5 394 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 121 360 0.0084 T 31-10-2018 IPR020803 Polyketide synthase, methyltransferase domain Y89_6286 199e2d9fdb518c3a88a85bf60a4377f5 394 Gene3D G3DSA:3.40.50.150 107 380 1.0E-102 T 31-10-2018 Y89_3285 458eaf108a17d2dfb9094f4230612ce2 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 2 98 8.3E-23 T 31-10-2018 IPR008407 Branched-chain amino acid transport, AzlD Y89_0326 09e84dfc935c35e00ba962184688bba1 203 Gene3D G3DSA:3.40.30.10 48 202 1.7E-9 T 31-10-2018 Y89_0326 09e84dfc935c35e00ba962184688bba1 203 SUPERFAMILY SSF52833 56 201 7.96E-15 T 31-10-2018 IPR036249 Thioredoxin-like superfamily Y89_0505 8cfba57f0b1009aae746c1c507867bfc 147 Pfam PF00583 Acetyltransferase (GNAT) family 18 134 9.5E-15 T 31-10-2018 IPR000182 GNAT domain Y89_0505 8cfba57f0b1009aae746c1c507867bfc 147 SUPERFAMILY SSF55729 3 145 3.09E-33 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_0505 8cfba57f0b1009aae746c1c507867bfc 147 Gene3D G3DSA:3.40.630.30 3 140 6.6E-36 T 31-10-2018 Y89_3822 1a63a9291c1ed078164252e2f5b61aad 171 Pfam PF09349 OHCU decarboxylase 11 169 1.2E-45 T 31-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y89_3822 1a63a9291c1ed078164252e2f5b61aad 171 SUPERFAMILY SSF158694 11 171 2.62E-52 T 31-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y89_3822 1a63a9291c1ed078164252e2f5b61aad 171 Gene3D G3DSA:1.10.3330.10 11 171 1.6E-60 T 31-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y89_3822 1a63a9291c1ed078164252e2f5b61aad 171 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 13 171 9.2E-69 T 31-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 Gene3D G3DSA:1.10.760.10 44 142 1.1E-37 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 Pfam PF02239 Cytochrome D1 heme domain 171 563 4.4E-167 T 31-10-2018 Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 SUPERFAMILY SSF51004 143 568 1.57E-128 T 31-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 62 134 7.7E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 Gene3D G3DSA:2.140.10.20 143 568 3.6E-208 T 31-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Y89_0540 d017dae48d8f132782e9b07691f99cb8 568 SUPERFAMILY SSF46626 18 159 8.6E-21 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Y89_5733 b5e83c517d53f17f1fcfc70f9a0440e1 138 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 21 136 2.2E-42 T 31-10-2018 IPR008769 Poly granule associated Y89_5733 b5e83c517d53f17f1fcfc70f9a0440e1 138 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 13 135 1.7E-46 T 31-10-2018 IPR008769 Poly granule associated Y89_4776 4b04aea4460047a0389cf85302231c51 489 Pfam PF01384 Phosphate transporter family 30 478 1.6E-85 T 31-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y89_4610 dc2d74a6ba980d8e99684f1b24a2279d 273 Pfam PF04294 VanW like protein 70 203 1.9E-33 T 31-10-2018 IPR007391 Vancomycin resistance VanW Y89_1431 686f08b51b92080abbcccfce68ec14de 469 Pfam PF00083 Sugar (and other) transporter 21 218 1.2E-17 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Y89_1431 686f08b51b92080abbcccfce68ec14de 469 SUPERFAMILY SSF103473 6 426 4.32E-53 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1431 686f08b51b92080abbcccfce68ec14de 469 Gene3D G3DSA:1.20.1250.20 18 444 4.7E-49 T 31-10-2018 Y89_2174 79180de09ce3731fcb434ffa0e1b8c7f 249 Pfam PF01925 Sulfite exporter TauE/SafE 8 243 1.8E-46 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_1981 61242d82bde0767356bc00f07f3459e1 421 Gene3D G3DSA:2.40.160.10 32 421 1.5E-187 T 31-10-2018 IPR023614 Porin domain superfamily Y89_1981 61242d82bde0767356bc00f07f3459e1 421 Pfam PF03573 outer membrane porin, OprD family 28 419 1.3E-165 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4415 7ea2e835001b53ad3c722ecda69067cf 238 Pfam PF11306 Protein of unknown function (DUF3108) 19 220 2.8E-19 T 31-10-2018 IPR021457 Protein of unknown function DUF3108 Y89_2011 8f873f4603257b381908671416a89ad2 161 SUPERFAMILY SSF52540 45 159 1.59E-29 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_2011 8f873f4603257b381908671416a89ad2 161 Gene3D G3DSA:3.40.50.300 43 161 4.0E-28 T 31-10-2018 Y89_2011 8f873f4603257b381908671416a89ad2 161 Pfam PF03846 Cell division inhibitor SulA 47 133 2.3E-8 T 31-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 Y89_5839 df337cb32963055479d71a8e360f5a47 595 Pfam PF06048 Domain of unknown function (DUF927) 45 313 2.8E-71 T 31-10-2018 IPR009270 Domain of unknown function DUF927 Y89_0597 ac7b4f21dd45132d8bf29d1971ca6558 753 SUPERFAMILY SSF52743 268 563 8.64E-40 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_0597 ac7b4f21dd45132d8bf29d1971ca6558 753 Pfam PF00082 Subtilase family 302 560 7.6E-24 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Y89_0597 ac7b4f21dd45132d8bf29d1971ca6558 753 Gene3D G3DSA:3.40.50.200 257 564 1.1E-38 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Y89_3541 61a3e6540a6532be613dffa9f9ffc506 443 Pfam PF01145 SPFH domain / Band 7 family 33 287 1.4E-38 T 31-10-2018 IPR001107 Band 7 domain Y89_4069 62954efab00014fd2f4fba3f7410ea16 245 Pfam PF02654 Cobalamin-5-phosphate synthase 11 241 8.1E-52 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Y89_4069 62954efab00014fd2f4fba3f7410ea16 245 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 245 49.012 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Y89_4069 62954efab00014fd2f4fba3f7410ea16 245 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 7 243 5.3E-40 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Y89_0631 7a604e586a381d4a43f2db4044de3395 317 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 9 308 6.0E-39 T 31-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 Y89_4371 a70e5465c4e6fc266b6e1b85ec0f8238 87 SUPERFAMILY SSF46689 2 68 7.7E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Y89_4371 a70e5465c4e6fc266b6e1b85ec0f8238 87 Pfam PF01527 Transposase 2 70 1.5E-22 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Y89_2484 7217a17509ca7dd46210612a8c323a8c 222 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 21 215 3.0E-44 T 31-10-2018 IPR006214 Bax inhibitor 1-related Y89_2484 7217a17509ca7dd46210612a8c323a8c 222 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 88 119 - T 31-10-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 Y89_4098 ef1565f887850456577e2b10ec3ecbb5 526 SUPERFAMILY SSF53720 24 516 9.16E-99 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Y89_4098 ef1565f887850456577e2b10ec3ecbb5 526 Gene3D G3DSA:3.40.309.10 266 453 1.6E-198 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Y89_4098 ef1565f887850456577e2b10ec3ecbb5 526 Pfam PF00171 Aldehyde dehydrogenase family 37 454 4.3E-47 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Y89_4098 ef1565f887850456577e2b10ec3ecbb5 526 Gene3D G3DSA:3.40.605.10 44 518 1.6E-198 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Y89_2869 bb1b7462dac12d317a2a3c1536194851 99 Gene3D G3DSA:1.10.10.10 6 82 6.4E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_2869 bb1b7462dac12d317a2a3c1536194851 99 Pfam PF09339 IclR helix-turn-helix domain 9 59 6.9E-9 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Y89_2869 bb1b7462dac12d317a2a3c1536194851 99 SUPERFAMILY SSF46785 8 80 7.59E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Y89_3715 49a241df9bed5d1be3672d16c14479dc 213 PIRSF PIRSF006324 1 208 8.1E-45 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_3715 49a241df9bed5d1be3672d16c14479dc 213 Pfam PF01810 LysE type translocator 16 205 2.2E-35 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_4981 a87d37a68754a5f15a6884123add6880 589 Pfam PF09909 Uncharacterized protein conserved in bacteria (DUF2138) 31 586 2.4E-252 T 31-10-2018 IPR018671 Protein of unknown function DUF2138 Y89_1834 bdb794a393aa4af5b53237376a65e38a 238 Gene3D G3DSA:3.40.50.1360 14 238 1.2E-64 T 31-10-2018 Y89_1834 bdb794a393aa4af5b53237376a65e38a 238 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 17 232 6.3E-72 T 31-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 Y89_1834 bdb794a393aa4af5b53237376a65e38a 238 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 19 228 1.1E-51 T 31-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Y89_1834 bdb794a393aa4af5b53237376a65e38a 238 SUPERFAMILY SSF100950 16 235 3.84E-54 T 31-10-2018 IPR037171 NagB/RpiA transferase-like Y89_2528 76f9d63973ac1228663c2504369bca3c 148 Gene3D G3DSA:3.10.450.50 5 137 1.0E-26 T 31-10-2018 Y89_2528 76f9d63973ac1228663c2504369bca3c 148 SUPERFAMILY SSF54427 8 132 3.27E-22 T 31-10-2018 IPR032710 NTF2-like domain superfamily Y89_2528 76f9d63973ac1228663c2504369bca3c 148 Pfam PF12680 SnoaL-like domain 10 118 1.1E-11 T 31-10-2018 IPR037401 SnoaL-like domain Y89_0680 9f65953eaca82a83130e5db24e5d08ff 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 258 3.5E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Y89_0680 9f65953eaca82a83130e5db24e5d08ff 276 SUPERFAMILY SSF161098 11 267 3.08E-59 T 31-10-2018 IPR035906 MetI-like superfamily Y89_0680 9f65953eaca82a83130e5db24e5d08ff 276 Gene3D G3DSA:1.10.3720.10 11 272 1.1E-57 T 31-10-2018 IPR035906 MetI-like superfamily Y89_1748 6fa6dee3bbbef4896db08adfd65bcad7 311 Pfam PF01758 Sodium Bile acid symporter family 42 218 1.1E-43 T 31-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Y89_1748 6fa6dee3bbbef4896db08adfd65bcad7 311 Gene3D G3DSA:1.20.1530.20 1 306 2.4E-109 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily Y89_1116 41ffdbd5e29109a48908f8cffa11fbf0 261 Pfam PF15648 Restriction endonuclease fold toxin 5 116 203 1.1E-21 T 31-10-2018 IPR028904 Tox-REase-5 domain Y89_0019 e5b6df45971b0fd34e6e7357ceb394f6 217 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 14 202 5.9E-56 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Y89_0019 e5b6df45971b0fd34e6e7357ceb394f6 217 Pfam PF02592 Putative vitamin uptake transporter 43 199 2.9E-35 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Y89_0019 e5b6df45971b0fd34e6e7357ceb394f6 217 Hamap MF_02088 Probable queuosine precursor transporter. 12 217 15.134 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Y89_3638 09ab32c4ccdaf35b57cd5cc475eae57f 132 Pfam PF02120 Flagellar hook-length control protein FliK 35 117 7.8E-10 T 31-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Y89_3638 09ab32c4ccdaf35b57cd5cc475eae57f 132 TIGRFAM TIGR02514 type_III_yscP: type III secretion system needle length determinant 3 132 9.2E-48 T 31-10-2018 IPR013354 Type III secretion system needle length determinant, C-terminal domain GO:0009405 Y89_1392 c81cbaed0ca34733f9baac241f94407b 94 Hamap MF_00599 Cell division protein FtsB [ftsB]. 2 94 32.351 T 31-10-2018 IPR023081 Cell division protein FtsB Y89_1392 c81cbaed0ca34733f9baac241f94407b 94 Pfam PF04977 Septum formation initiator 17 92 2.7E-23 T 31-10-2018 IPR007060 Septum formation initiator FtsL/DivIC Y89_4189 42a02b9e413273c9541dead034f3b510 270 Gene3D G3DSA:3.40.50.720 2 264 7.2E-103 T 31-10-2018 Y89_4189 42a02b9e413273c9541dead034f3b510 270 SUPERFAMILY SSF69572 3 254 1.16E-65 T 31-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Y89_4189 42a02b9e413273c9541dead034f3b510 270 Pfam PF00899 ThiF family 15 259 1.3E-42 T 31-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Y89_2371 11068955794d765b100b8df30767ade6 411 SUPERFAMILY SSF51395 2 348 1.05E-102 T 31-10-2018 Y89_2371 11068955794d765b100b8df30767ade6 411 Gene3D G3DSA:3.20.20.70 1 373 8.2E-114 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Y89_2371 11068955794d765b100b8df30767ade6 411 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 338 4.8E-49 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Y89_1943 0e091fee5841e36fb1c8539f03e612c7 359 Pfam PF12740 Chlorophyllase enzyme 61 188 8.3E-14 T 31-10-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 Y89_1943 0e091fee5841e36fb1c8539f03e612c7 359 SUPERFAMILY SSF53474 26 253 1.13E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1943 0e091fee5841e36fb1c8539f03e612c7 359 Gene3D G3DSA:3.40.50.1820 25 282 3.9E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1130 764e0030648caee1074bd08a4e43b6a4 731 Pfam PF04632 Fusaric acid resistance protein family 30 714 9.5E-216 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Y89_5264 9e3ad68c13060f231b015b524c2b405f 315 Pfam PF05229 Spore Coat Protein U domain 185 311 3.9E-32 T 31-10-2018 IPR007893 Spore coat protein U Y89_5264 9e3ad68c13060f231b015b524c2b405f 315 Pfam PF05229 Spore Coat Protein U domain 14 160 5.6E-25 T 31-10-2018 IPR007893 Spore coat protein U Y89_5264 9e3ad68c13060f231b015b524c2b405f 315 SMART SM00972 257 312 1.9E-15 T 31-10-2018 IPR007893 Spore coat protein U Y89_5264 9e3ad68c13060f231b015b524c2b405f 315 SMART SM00972 97 162 5.0E-16 T 31-10-2018 IPR007893 Spore coat protein U Y89_4995 0b40318da3322f6dc5cdb4d92ede441a 309 Gene3D G3DSA:2.40.100.10 181 307 9.2E-38 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_4995 0b40318da3322f6dc5cdb4d92ede441a 309 SMART SM00797 25 307 2.2E-118 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_4995 0b40318da3322f6dc5cdb4d92ede441a 309 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 4 294 3.9E-74 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_4995 0b40318da3322f6dc5cdb4d92ede441a 309 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 289 2.4E-77 T 31-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Y89_4995 0b40318da3322f6dc5cdb4d92ede441a 309 SUPERFAMILY SSF50891 184 293 4.93E-9 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily Y89_5635 bbeec9ed4f00695018f60e30738674ea 161 SUPERFAMILY SSF50630 45 147 2.69E-20 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_5635 bbeec9ed4f00695018f60e30738674ea 161 Gene3D G3DSA:2.40.70.10 38 159 1.8E-31 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_5635 bbeec9ed4f00695018f60e30738674ea 161 Pfam PF13975 gag-polyprotein putative aspartyl protease 55 143 5.7E-24 T 31-10-2018 Y89_5635 bbeec9ed4f00695018f60e30738674ea 161 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 42 157 1.9E-32 T 31-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Y89_2953 d9c9a98c18095af4415b55269139a09e 180 SUPERFAMILY SSF55826 35 176 1.44E-27 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_2953 d9c9a98c18095af4415b55269139a09e 180 Gene3D G3DSA:3.90.960.10 15 179 1.4E-26 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Y89_2953 d9c9a98c18095af4415b55269139a09e 180 Pfam PF04073 Aminoacyl-tRNA editing domain 48 166 6.1E-21 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Y89_2873 299bb010a32c16051bbc2dda478a7aa9 69 SUPERFAMILY SSF47413 10 63 6.68E-6 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_2873 299bb010a32c16051bbc2dda478a7aa9 69 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 8 62 3.4E-27 T 31-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family Y89_0523 110938e2bd63ff10bdfe6ed45ae0f625 240 Gene3D G3DSA:3.40.50.1820 2 236 2.5E-35 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0523 110938e2bd63ff10bdfe6ed45ae0f625 240 SUPERFAMILY SSF53474 5 236 6.1E-30 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_0523 110938e2bd63ff10bdfe6ed45ae0f625 240 Pfam PF12697 Alpha/beta hydrolase family 20 228 4.3E-9 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1820 37d43d0b9d37068cf0c958351b21fefb 70 Pfam PF06945 Protein of unknown function (DUF1289) 13 57 3.6E-18 T 31-10-2018 IPR010710 Protein of unknown function DUF1289 Y89_3231 324f3c19ddce6751bc64b9850d765bd9 281 Pfam PF10983 Protein of unknown function (DUF2793) 33 116 1.0E-4 T 31-10-2018 IPR021251 Protein of unknown function DUF2793 Y89_1786 91264fa1e0ce4773b3b01232099adec6 88 Pfam PF10976 Protein of unknown function (DUF2790) 11 85 3.6E-26 T 31-10-2018 IPR021245 Protein of unknown function DUF2790 Y89_1786 91264fa1e0ce4773b3b01232099adec6 88 Gene3D G3DSA:2.30.140.50 20 88 8.9E-36 T 31-10-2018 Y89_5012 3985db6bffd5f89cef9b172e5a3e21a6 66 Pfam PF12728 Helix-turn-helix domain 13 58 3.1E-7 T 31-10-2018 Y89_3376 f1c15c935122296d21b9d1c9b202b9b6 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 318 1.0E-47 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_2031 69d9a71aa0861f4e9199e9cf0b5c214a 199 Pfam PF07238 PilZ domain 78 174 1.2E-11 T 31-10-2018 IPR009875 PilZ domain GO:0035438 Y89_6396 335f43f47b481c19711e002f9ae0da9f 147 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 17 144 6.9E-55 T 31-10-2018 IPR022262 Lipoprotein, putative Y89_2940 b4fcf21f1d2391d8383b9ac57911d228 417 SUPERFAMILY SSF103473 17 391 8.11E-53 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_2940 b4fcf21f1d2391d8383b9ac57911d228 417 Pfam PF07690 Major Facilitator Superfamily 31 338 1.1E-33 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_2940 b4fcf21f1d2391d8383b9ac57911d228 417 Gene3D G3DSA:1.20.1250.20 24 393 6.2E-46 T 31-10-2018 Y89_5213 57648571effecb826468a75fad8e8778 67 Pfam PF04328 Selenoprotein, putative 5 67 2.4E-30 T 31-10-2018 IPR007423 Selenoprotein, putative Y89_4478 c55473a23c731ddb420556a01fac405d 450 Pfam PF03972 MmgE/PrpD family 5 440 2.8E-136 T 31-10-2018 IPR005656 MmgE/PrpD GO:0016829 Y89_4478 c55473a23c731ddb420556a01fac405d 450 Gene3D G3DSA:3.30.1330.120 268 400 1.5E-100 T 31-10-2018 Y89_4478 c55473a23c731ddb420556a01fac405d 450 SUPERFAMILY SSF103378 2 446 5.23E-122 T 31-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Y89_4478 c55473a23c731ddb420556a01fac405d 450 Gene3D G3DSA:1.10.4100.10 25 417 1.5E-100 T 31-10-2018 Y89_0661 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Pfam PF00581 Rhodanese-like domain 10 97 2.5E-16 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_0661 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 3 105 30.086 T 31-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 Y89_0661 2f92f35296d9c4fc1df9d0feb1dd0e51 110 SMART SM00450 8 102 2.5E-20 T 31-10-2018 IPR001763 Rhodanese-like domain Y89_0661 2f92f35296d9c4fc1df9d0feb1dd0e51 110 Gene3D G3DSA:3.40.250.10 2 107 3.0E-25 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_0661 2f92f35296d9c4fc1df9d0feb1dd0e51 110 SUPERFAMILY SSF52821 3 101 5.37E-28 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily Y89_5310 39439c62f5b2421017372f65915d1729 109 Pfam PF04287 tRNA pseudouridine synthase C 8 104 3.2E-33 T 31-10-2018 IPR023376 YqcC-like domain Y89_5310 39439c62f5b2421017372f65915d1729 109 PIRSF PIRSF006257 2 109 4.8E-40 T 31-10-2018 IPR007384 Protein of unknown function UCP006257 Y89_5310 39439c62f5b2421017372f65915d1729 109 Gene3D G3DSA:1.20.1440.40 3 106 7.7E-32 T 31-10-2018 IPR036814 YqcC-like superfamily Y89_5310 39439c62f5b2421017372f65915d1729 109 SUPERFAMILY SSF158452 7 107 2.88E-34 T 31-10-2018 IPR036814 YqcC-like superfamily Y89_2583 d1958d49abbafdde450f7e26f299c6bb 257 Pfam PF11136 Protein of unknown function (DUF2889) 26 100 3.0E-9 T 31-10-2018 IPR021312 Protein of unknown function DUF2889 Y89_2285 fd8f5b08768821dbfb7d329381c1e7df 147 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 8 117 6.0E-7 T 31-10-2018 IPR020143 Uncharacterised protein family, RP436 Y89_2285 fd8f5b08768821dbfb7d329381c1e7df 147 Pfam PF09335 SNARE associated Golgi protein 30 140 1.8E-13 T 31-10-2018 IPR032816 SNARE associated Golgi protein Y89_3270 e97cf5c3ce7b43cca2fac45b996ce124 229 PIRSF PIRSF028111 1 229 2.0E-87 T 31-10-2018 IPR016868 Bacteriophage B3, Orf5 Y89_3270 e97cf5c3ce7b43cca2fac45b996ce124 229 Pfam PF10979 Protein of unknown function (DUF2786) 5 45 3.8E-15 T 31-10-2018 IPR024498 Domain of unknown function DUF2786 Y89_2323 74cd293ea564d24c78a466007c7fcf85 95 SUPERFAMILY SSF47598 48 89 3.45E-8 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Y89_1926 6139be549f8a078e6d9a314fbc446272 372 SUPERFAMILY SSF56317 62 284 6.93E-25 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1926 6139be549f8a078e6d9a314fbc446272 372 Pfam PF00795 Carbon-nitrogen hydrolase 160 285 5.2E-9 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Y89_1926 6139be549f8a078e6d9a314fbc446272 372 Gene3D G3DSA:3.60.110.10 62 295 1.6E-25 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Y89_1486 e5e9c2457a570a566eb8f86bc3b996d9 493 ProDom PD339107 ALGINATE ALG8 BIOSYNTHESIS TRANSFERASE TRANSMEMBRANE MEMBRANE 2.4.1.- GLYCOSYL GLYCOSYLTRANSFERASE PRECURSOR 1 493 0.0 T 31-10-2018 Y89_1486 e5e9c2457a570a566eb8f86bc3b996d9 493 SUPERFAMILY SSF53448 150 362 8.44E-12 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Y89_1486 e5e9c2457a570a566eb8f86bc3b996d9 493 Pfam PF13641 Glycosyltransferase like family 2 86 342 6.4E-54 T 31-10-2018 Y89_4660 27a1097621f01c3b908dc25415c20788 201 Pfam PF01464 Transglycosylase SLT domain 41 162 3.2E-7 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 Y89_4660 27a1097621f01c3b908dc25415c20788 201 Gene3D G3DSA:1.10.530.10 36 198 5.4E-10 T 31-10-2018 Y89_4660 27a1097621f01c3b908dc25415c20788 201 SUPERFAMILY SSF53955 38 182 2.68E-16 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily Y89_5894 03d92a750235d84cddca63b900817e25 422 Pfam PF01384 Phosphate transporter family 26 409 4.5E-113 T 31-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Y89_0456 290c3e30858ac85073602524a053d577 138 Pfam PF11162 Protein of unknown function (DUF2946) 18 137 9.1E-9 T 31-10-2018 IPR021333 Protein of unknown function DUF2946 Y89_1111 5a8f682e4d4a660bd0e1a5c600e985ac 296 Pfam PF01136 Peptidase family U32 83 264 1.2E-11 T 31-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Y89_0063 ac88d47a37b79db70646384c0b112013 142 SUPERFAMILY SSF51182 42 132 1.67E-11 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily Y89_0063 ac88d47a37b79db70646384c0b112013 142 Gene3D G3DSA:2.60.120.10 36 127 1.1E-8 T 31-10-2018 IPR014710 RmlC-like jelly roll fold Y89_6043 73eab3685d046742294f367bcfe8d720 114 PIRSF PIRSF025560 2 114 9.6E-31 T 31-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 Y89_6043 73eab3685d046742294f367bcfe8d720 114 Pfam PF07027 Protein of unknown function (DUF1318) 28 114 2.9E-26 T 31-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 Y89_5728 f403078afc7af5a8db6293df4e55251b 559 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 559 0.0 T 31-10-2018 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 Y89_5728 f403078afc7af5a8db6293df4e55251b 559 SUPERFAMILY SSF53474 198 489 4.16E-36 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5728 f403078afc7af5a8db6293df4e55251b 559 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 2.2E-65 T 31-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Y89_2768 2c75f0afaec1cbd58ccf1f9ace9a70a0 69 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 1.4E-15 T 31-10-2018 IPR012451 Protein of unknown function DUF1656 Y89_3098 3b36ca84b5daee6e303c10b9651ded55 196 Gene3D G3DSA:3.40.50.720 19 194 2.3E-6 T 31-10-2018 Y89_4526 eb9903c94b36b1c75648455a9ba61d98 304 SMART SM00563 89 231 1.2E-15 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_4526 eb9903c94b36b1c75648455a9ba61d98 304 SUPERFAMILY SSF69593 58 288 3.79E-36 T 31-10-2018 Y89_4526 eb9903c94b36b1c75648455a9ba61d98 304 Pfam PF01553 Acyltransferase 76 221 3.1E-14 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Y89_0397 e667c065fcbf385370f4db841f3527ba 335 PIRSF PIRSF003097 37 331 6.2E-64 T 31-10-2018 IPR004513 Cell division protein FtsX GO:0016021 Y89_3209 84d668426e2a8c090296fe81bca5dec7 212 Gene3D G3DSA:3.40.50.620 16 137 8.2E-11 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Y89_3209 84d668426e2a8c090296fe81bca5dec7 212 Pfam PF02698 DUF218 domain 27 131 1.3E-14 T 31-10-2018 IPR003848 Domain of unknown function DUF218 Y89_5120 1c70ad99859d9925287cd4724de15577 49 Pfam PF11660 Protein of unknown function (DUF3262) 2 48 1.5E-12 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_5120 1c70ad99859d9925287cd4724de15577 49 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 1 49 1.5E-14 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_6390 1c70ad99859d9925287cd4724de15577 49 Pfam PF11660 Protein of unknown function (DUF3262) 2 48 1.5E-12 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_6390 1c70ad99859d9925287cd4724de15577 49 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 1 49 1.5E-14 T 31-10-2018 IPR021676 Protein of unknown function DUF3262 Y89_0352 f772651e4238824cbaf19539148597db 155 Pfam PF10027 Predicted integral membrane protein (DUF2269) 7 154 1.7E-44 T 31-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane Y89_3976 3958e288fd238298fe28fe2296daa70b 213 Pfam PF14487 Domain of unknown function (DUF4433) 17 209 3.3E-19 T 31-10-2018 IPR029494 Domain of unknown function DUF4433 Y89_6097 04bf1e4cf56b72aa9b0f215f3d1e3ac7 127 PIRSF PIRSF029720 1 124 6.8E-56 T 31-10-2018 IPR014558 Uncharacterised conserved lipoprotein Y89_6097 04bf1e4cf56b72aa9b0f215f3d1e3ac7 127 Pfam PF03640 Secreted repeat of unknown function 29 67 5.4E-14 T 31-10-2018 IPR005297 Lipoprotein repeat Y89_6097 04bf1e4cf56b72aa9b0f215f3d1e3ac7 127 Pfam PF03640 Secreted repeat of unknown function 81 122 2.7E-19 T 31-10-2018 IPR005297 Lipoprotein repeat Y89_5035 4ae35ff4be215a032433bcbcf585b1d1 156 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 72 1.1E-15 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Y89_1375 d2d4098df539ee5d43544772f6844f96 271 Pfam PF01148 Cytidylyltransferase family 3 264 2.6E-66 T 31-10-2018 Y89_1375 d2d4098df539ee5d43544772f6844f96 271 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 224 250 - T 31-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 Y89_5987 ed60f6390d02b4ffda8a287dbd1eb569 100 Gene3D G3DSA:3.30.70.100 1 93 7.6E-33 T 31-10-2018 Y89_5987 ed60f6390d02b4ffda8a287dbd1eb569 100 SUPERFAMILY SSF54909 1 98 3.11E-27 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel Y89_3259 3752d0aca8ccb600b97e62ab0a2a004f 76 Gene3D G3DSA:1.10.260.40 8 75 4.0E-5 T 31-10-2018 Y89_3259 3752d0aca8ccb600b97e62ab0a2a004f 76 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 14 68 7.0E-26 T 31-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family Y89_3259 3752d0aca8ccb600b97e62ab0a2a004f 76 SUPERFAMILY SSF47413 15 70 3.41E-5 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_0858 be295faa1302faba6a2ee674cc261519 108 SUPERFAMILY SSF110857 1 106 3.92E-21 T 31-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Y89_0858 be295faa1302faba6a2ee674cc261519 108 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 106 9.0E-16 T 31-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like Y89_0858 be295faa1302faba6a2ee674cc261519 108 Gene3D G3DSA:3.10.490.10 1 108 4.2E-19 T 31-10-2018 Y89_3115 de67722a9519065b557bd7d73a7374fe 101 Pfam PF11154 Protein of unknown function (DUF2934) 4 38 1.9E-14 T 31-10-2018 IPR021327 Protein of unknown function DUF2934 Y89_0694 aa53fae5c46a14a247752daf6200458a 177 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 141 1.1E-41 T 31-10-2018 IPR006521 Tail protein I Y89_0694 aa53fae5c46a14a247752daf6200458a 177 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 142 1.6E-47 T 31-10-2018 IPR006521 Tail protein I Y89_5636 19f657c920389079f8ce8a1a4b6445f5 337 Pfam PF13449 Esterase-like activity of phytase 44 194 1.0E-11 T 31-10-2018 IPR027372 Phytase-like domain Y89_5636 19f657c920389079f8ce8a1a4b6445f5 337 SUPERFAMILY SSF101898 44 276 2.88E-8 T 31-10-2018 Y89_6340 2e0f3371f1cc9eddbc81d389f9d2542e 255 Pfam PF11198 Protein of unknown function (DUF2857) 7 190 1.1E-46 T 31-10-2018 IPR021364 Protein of unknown function DUF2857 Y89_4635 c9ecdbb8968a544a4b13c55b996cf0fc 291 Gene3D G3DSA:3.40.50.300 1 272 4.5E-48 T 31-10-2018 Y89_4635 c9ecdbb8968a544a4b13c55b996cf0fc 291 SUPERFAMILY SSF52540 1 266 1.98E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Y89_4635 c9ecdbb8968a544a4b13c55b996cf0fc 291 Pfam PF13614 AAA domain 1 168 5.5E-26 T 31-10-2018 IPR025669 AAA domain Y89_3494 a12b767c3a1d27a9c1b3d2381a9c8910 145 Pfam PF14539 Domain of unknown function (DUF4442) 14 142 6.3E-52 T 31-10-2018 IPR027961 Protein of unknown function DUF4442 Y89_3494 a12b767c3a1d27a9c1b3d2381a9c8910 145 SUPERFAMILY SSF54637 1 142 8.71E-29 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_3494 a12b767c3a1d27a9c1b3d2381a9c8910 145 Gene3D G3DSA:3.10.129.10 1 145 4.3E-54 T 31-10-2018 Y89_1554 e0e02d14807a09f4c8a651fce828041d 523 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 27 514 8.4E-243 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_1554 e0e02d14807a09f4c8a651fce828041d 523 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 27 511 1.2E-217 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_1554 e0e02d14807a09f4c8a651fce828041d 523 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 23 514 54.957 T 31-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 Y89_1554 e0e02d14807a09f4c8a651fce828041d 523 SUPERFAMILY SSF51905 24 354 7.29E-25 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Y89_1632 d5968bc52707319b0307afbbf34cdb30 294 Pfam PF06007 Phosphonate metabolism protein PhnJ 14 284 4.7E-145 T 31-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_1632 d5968bc52707319b0307afbbf34cdb30 294 PIRSF PIRSF011468 5 294 9.3E-159 T 31-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Y89_6045 ab53c6b5806df380a51c362b2ad37e6a 855 Pfam PF11739 Dicarboxylate transport 634 839 1.2E-59 T 31-10-2018 IPR021730 Dicarboxylate transport Y89_5087 8af2f548940991121d179cebe86c8ac6 177 TIGRFAM TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP 25 135 8.0E-33 T 31-10-2018 IPR022753 Type IV pilus biogenesis PilP Y89_3234 8a59b5bd67503732fc8f876a6a0d1308 272 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 27 156 2.8E-9 T 31-10-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal Y89_3234 8a59b5bd67503732fc8f876a6a0d1308 272 Pfam PF09356 Phage conserved hypothetical protein BR0599 188 263 1.3E-16 T 31-10-2018 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal Y89_3234 8a59b5bd67503732fc8f876a6a0d1308 272 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 21 263 1.4E-37 T 31-10-2018 IPR011928 Bacteriophage phiJL001, Gp84 Y89_4680 924bed6bd83f2389df6f50f5755109d2 507 Pfam PF07916 TraG-like protein, N-terminal region 10 488 3.6E-96 T 31-10-2018 IPR012931 TraG-like, N-terminal Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 Gene3D G3DSA:3.40.718.10 1 418 2.8E-186 T 31-10-2018 Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 SMART SM01329 30 414 1.7E-180 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 305 324 - T 31-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 SUPERFAMILY SSF53659 4 418 2.11E-147 T 31-10-2018 Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 418 4.4E-225 T 31-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Y89_2465 828a72de93b4d9b6c49651aa56dd5585 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 413 9.4E-118 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Y89_6092 413242d87e1e4e5c7b2d59a91391ea12 359 Pfam PF01565 FAD binding domain 14 143 6.3E-19 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Y89_6092 413242d87e1e4e5c7b2d59a91391ea12 359 Gene3D G3DSA:1.10.45.10 327 355 1.1E-5 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Y89_6092 413242d87e1e4e5c7b2d59a91391ea12 359 SUPERFAMILY SSF56176 19 181 1.64E-27 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Y89_6092 413242d87e1e4e5c7b2d59a91391ea12 359 Gene3D G3DSA:3.30.465.10 62 180 2.7E-31 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Y89_6092 413242d87e1e4e5c7b2d59a91391ea12 359 SUPERFAMILY SSF55103 140 355 9.29E-20 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Y89_5296 52e89b20a123d101f0e9ee21ca377ebe 231 Gene3D G3DSA:1.10.10.2250 9 69 2.2E-5 T 31-10-2018 Y89_4881 d3706950da4f79f18b179206aa6b1a6b 127 SUPERFAMILY SSF46767 29 110 3.92E-21 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Y89_4881 d3706950da4f79f18b179206aa6b1a6b 127 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 30 109 2.2E-20 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Y89_4881 d3706950da4f79f18b179206aa6b1a6b 127 Gene3D G3DSA:1.10.10.10 24 127 4.6E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 1.7E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.7E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 1.7E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 Gene3D G3DSA:3.40.50.1820 13 262 2.8E-62 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 SUPERFAMILY SSF53474 5 261 5.31E-65 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1789 0df15f0df6129fe250d4dee9b989c91b 275 Pfam PF12697 Alpha/beta hydrolase family 25 251 3.1E-25 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_1689 00b2033890afed40308bccaf9f7f9da5 151 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 144 5.0E-36 T 31-10-2018 IPR006750 Putative inner membrane exporter, YdcZ Y89_3387 898655ff560d1b3f0f641bdc8f0e668a 126 Gene3D G3DSA:2.60.40.4110 21 126 9.7E-42 T 31-10-2018 Y89_3387 898655ff560d1b3f0f641bdc8f0e668a 126 Pfam PF14263 Domain of unknown function (DUF4354) 1 123 1.9E-48 T 31-10-2018 IPR025581 Protein of unknown function DUF4354 Y89_6216 41c5a7c0ab6581ca77894934407add6f 186 SUPERFAMILY SSF55729 28 169 1.44E-17 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_6216 41c5a7c0ab6581ca77894934407add6f 186 Gene3D G3DSA:3.40.630.30 23 185 1.2E-34 T 31-10-2018 Y89_1937 cad1e9b779a16bfa9c76272bc117c8c0 654 Pfam PF06980 Protein of unknown function (DUF1302) 40 654 2.3E-185 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_5246 2bd77a9dc087ef1465d951c1eb571c0e 60 PIRSF PIRSF037225 1 60 6.2E-26 T 31-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 Y89_5246 2bd77a9dc087ef1465d951c1eb571c0e 60 Pfam PF14255 Cysteine-rich CPXCG 7 56 7.5E-24 T 31-10-2018 IPR025990 Cysteine-rich CPXCG protein Y89_2525 b5cd407370089d64c12ffbfc499e4d9f 554 Pfam PF06980 Protein of unknown function (DUF1302) 29 554 4.0E-106 T 31-10-2018 IPR010727 Protein of unknown function DUF1302 Y89_4246 ff6e8880655963f7b1419e9ee4d92a3e 385 SUPERFAMILY SSF103473 1 382 1.03E-39 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4246 ff6e8880655963f7b1419e9ee4d92a3e 385 Pfam PF07690 Major Facilitator Superfamily 21 350 1.6E-30 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_4246 ff6e8880655963f7b1419e9ee4d92a3e 385 Gene3D G3DSA:1.20.1720.10 9 382 5.0E-64 T 31-10-2018 Y89_2830 46591d26bbbdec0b4920bc5d4ff33194 338 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 317 9.4E-83 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_2830 46591d26bbbdec0b4920bc5d4ff33194 338 Pfam PF06996 Type VI secretion, TssG 20 317 1.4E-73 T 31-10-2018 IPR010732 Type VI secretion, TssG-like Y89_5736 10e48082c6503d91374f70ac8e9647d6 208 SUPERFAMILY SSF55718 29 122 9.03E-6 T 31-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Y89_5736 10e48082c6503d91374f70ac8e9647d6 208 Pfam PF02036 SCP-2 sterol transfer family 17 114 1.3E-13 T 31-10-2018 IPR003033 SCP2 sterol-binding domain Y89_6371 8073fa43370c48394eecbe33fbf9e68a 210 Pfam PF11679 Protein of unknown function (DUF3275) 2 206 4.5E-79 T 31-10-2018 IPR021693 Protein of unknown function DUF3275 Y89_5101 8073fa43370c48394eecbe33fbf9e68a 210 Pfam PF11679 Protein of unknown function (DUF3275) 2 206 4.5E-79 T 31-10-2018 IPR021693 Protein of unknown function DUF3275 Y89_0458 d366a5b0d761226e11dbf737d7055cb7 492 Pfam PF03929 PepSY-associated TM region 8 277 8.7E-11 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_1896 19a6ebc94af0be96cffa16991d946a56 125 Gene3D G3DSA:3.30.1330.40 6 122 5.6E-36 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_1896 19a6ebc94af0be96cffa16991d946a56 125 Pfam PF01042 Endoribonuclease L-PSP 15 120 7.9E-28 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Y89_1896 19a6ebc94af0be96cffa16991d946a56 125 SUPERFAMILY SSF55298 13 124 1.08E-33 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Y89_1233 391a6f48b99c63e983023bed1de3ed31 110 Gene3D G3DSA:2.30.29.190 1 110 3.4E-50 T 31-10-2018 Y89_3623 d8c990a47abf17ccc85615887163d034 145 Pfam PF05932 Tir chaperone protein (CesT) family 9 126 2.0E-24 T 31-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 Y89_3623 d8c990a47abf17ccc85615887163d034 145 Gene3D G3DSA:3.30.1460.10 1 133 2.8E-35 T 31-10-2018 Y89_3623 d8c990a47abf17ccc85615887163d034 145 SUPERFAMILY SSF69635 4 129 5.23E-28 T 31-10-2018 Y89_3140 7aba5e790a21765eecf07d00e13e9b7b 71 Pfam PF13396 Phospholipase_D-nuclease N-terminal 18 53 4.9E-7 T 31-10-2018 IPR027379 Cardiolipin synthase N-terminal Y89_0841 70262b5318e423e23d864c2ef4dc2e10 239 Pfam PF03483 B3/4 domain 66 195 7.1E-16 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y89_0841 70262b5318e423e23d864c2ef4dc2e10 239 SMART SM00873 64 216 2.6E-15 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Y89_0841 70262b5318e423e23d864c2ef4dc2e10 239 SUPERFAMILY SSF56037 54 213 9.42E-26 T 31-10-2018 Y89_4805 48a4d35960f672ec371a7cf52c37752f 523 Pfam PF13559 Domain of unknown function (DUF4129) 442 514 2.4E-5 T 31-10-2018 IPR025403 Domain of unknown function DUF4129 Y89_1719 6ed13f4d7199b0b52297dc7ae580e0f7 271 Pfam PF13503 Domain of unknown function (DUF4123) 28 148 6.5E-18 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 Y89_1478 ad1060c33f6178afa57079935796a7f7 391 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 85 355 7.3E-100 T 31-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain Y89_6226 5f178c4ee5b8cedaa0741692f4ecddb9 197 Pfam PF01914 MarC family integral membrane protein 4 192 1.7E-42 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y89_1034 baf73e7157e84b82880d29f8b1010246 207 Gene3D G3DSA:3.30.160.150 18 183 8.4E-62 T 31-10-2018 Y89_1034 baf73e7157e84b82880d29f8b1010246 207 Pfam PF04390 Lipopolysaccharide-assembly 35 155 8.6E-10 T 31-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Y89_1034 baf73e7157e84b82880d29f8b1010246 207 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 161 23.468 T 31-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Y89_5696 404d7b67d04e6ea03b9db7227f155a2e 324 Pfam PF01925 Sulfite exporter TauE/SafE 86 317 2.3E-36 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_2203 493ce96e79c6d2c59091cf41b4f4ba72 106 Pfam PF11747 Killing trait 11 78 1.3E-28 T 31-10-2018 IPR021070 Killing trait, RebB Y89_0962 f21e6d25635add26f16c2e4ba6a4e7f8 190 Pfam PF10986 Protein of unknown function (DUF2796) 31 185 6.4E-53 T 31-10-2018 IPR021253 Protein of unknown function DUF2796 Y89_1118 cb36576f48a34ad98c2423bdb65385cc 175 Pfam PF13503 Domain of unknown function (DUF4123) 17 143 2.4E-22 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 Y89_4811 7abc2c51ff08935b44e8820c9393ff58 125 Gene3D G3DSA:1.25.40.10 17 118 2.4E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_0737 d9873da26acb9bcf821edef773bb474a 137 Pfam PF04519 Polymer-forming cytoskeletal 19 116 6.3E-25 T 31-10-2018 IPR007607 Bactofilin A/B Y89_3819 dac168a9e2ac461bf88502a99edcfadf 449 Pfam PF00860 Permease family 38 411 2.4E-50 T 31-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Y89_3819 dac168a9e2ac461bf88502a99edcfadf 449 PIRSF PIRSF005353 14 449 1.7E-173 T 31-10-2018 IPR026033 Purine permease PbuG-like Y89_4538 c598ae046ff895ff4e190328151aa9d1 107 Gene3D G3DSA:1.10.260.40 8 88 5.7E-9 T 31-10-2018 Y89_4538 c598ae046ff895ff4e190328151aa9d1 107 Pfam PF13744 Helix-turn-helix domain 12 86 8.4E-13 T 31-10-2018 IPR039554 HigA2-like, helix-turn-helix domain Y89_4538 c598ae046ff895ff4e190328151aa9d1 107 SUPERFAMILY SSF47413 31 95 6.76E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Y89_5842 26a595f931fa7605d0e4dd7c1f894df0 128 Pfam PF12728 Helix-turn-helix domain 68 116 2.0E-6 T 31-10-2018 Y89_5842 26a595f931fa7605d0e4dd7c1f894df0 128 SUPERFAMILY SSF46955 68 114 5.86E-5 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_3791 a02468acfd347f7a99e66d50ff7da8c8 227 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 11 212 1.2E-55 T 31-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain Y89_6218 b2886219c4e26a8172cb44eaa09e52df 346 PIRSF PIRSF029727 1 346 3.7E-182 T 31-10-2018 IPR016937 Uncharacterised conserved protein UCP029727 Y89_6218 b2886219c4e26a8172cb44eaa09e52df 346 Pfam PF11141 Protein of unknown function (DUF2914) 279 344 2.6E-24 T 31-10-2018 IPR022606 Protein of unknown function DUF2914 Y89_4835 ebe5f2f352ba7414878cfdc38dd2a3e0 251 SUPERFAMILY SSF55729 23 223 3.55E-38 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_4835 ebe5f2f352ba7414878cfdc38dd2a3e0 251 Pfam PF13444 Acetyltransferase (GNAT) domain 33 133 1.0E-29 T 31-10-2018 Y89_4835 ebe5f2f352ba7414878cfdc38dd2a3e0 251 Gene3D G3DSA:3.40.630.30 16 184 5.7E-24 T 31-10-2018 Y89_1247 8802c0392412581516fe1a041363e577 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 145 4.0E-23 T 31-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Y89_1997 b7af5924d6e3922495fffe70fa49e468 268 Pfam PF03473 MOSC domain 142 265 9.2E-32 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Y89_1997 b7af5924d6e3922495fffe70fa49e468 268 Pfam PF03476 MOSC N-terminal beta barrel domain 1 119 1.2E-34 T 31-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 Y89_1997 b7af5924d6e3922495fffe70fa49e468 268 SUPERFAMILY SSF50800 2 267 5.58E-22 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Y89_1997 b7af5924d6e3922495fffe70fa49e468 268 SUPERFAMILY SSF141673 4 133 4.84E-34 T 31-10-2018 Y89_6204 35d16456cca63b5a16e2060c2c15a56f 111 Pfam PF09498 Protein of unknown function (DUF2388) 41 110 3.1E-31 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_6204 35d16456cca63b5a16e2060c2c15a56f 111 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 6 110 7.2E-40 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 Y89_1240 c0b7ac26d7ba351de73d98ea3f3e44d8 129 Pfam PF11162 Protein of unknown function (DUF2946) 9 127 5.7E-11 T 31-10-2018 IPR021333 Protein of unknown function DUF2946 Y89_4137 1b66128a8dc124a99d024f4d9ba7d883 248 Pfam PF13649 Methyltransferase domain 39 124 3.4E-13 T 31-10-2018 Y89_4137 1b66128a8dc124a99d024f4d9ba7d883 248 Gene3D G3DSA:3.40.50.150 19 241 3.3E-28 T 31-10-2018 Y89_4137 1b66128a8dc124a99d024f4d9ba7d883 248 SUPERFAMILY SSF53335 3 158 1.15E-28 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Y89_4137 1b66128a8dc124a99d024f4d9ba7d883 248 Gene3D G3DSA:1.10.10.2560 133 233 3.3E-28 T 31-10-2018 Y89_5191 7c0237e77f3f9980f9e1703fa8f8244b 270 Pfam PF10127 Predicted nucleotidyltransferase 13 260 4.6E-92 T 31-10-2018 IPR018775 Nucleotidyltransferase, predicted Y89_1115 edeab583dfccada0088d1ec7aa520abc 239 Pfam PF15579 Immunity protein 52 139 234 9.8E-26 T 31-10-2018 IPR028969 Immunity protein 52 Y89_1115 edeab583dfccada0088d1ec7aa520abc 239 PIRSF PIRSF029636 10 239 6.6E-96 T 31-10-2018 IPR016929 Uncharacterised conserved protein UCP029636 Y89_5350 a4308ea1b967e7db85d908d3f3bbbcf5 104 Pfam PF11006 Protein of unknown function (DUF2845) 25 100 6.3E-22 T 31-10-2018 IPR021268 Protein of unknown function DUF2845 Y89_1242 8d836902c4ea11df5998758a41f0ac64 190 TIGRFAM TIGR04061 AZL_007950_fam: AZL_007950 family protein 18 183 1.2E-70 T 31-10-2018 IPR023973 Conserved hypothetical protein CHP04061, AZL007950 Y89_1979 1af68ce814bfb8fd0b477a66eef9e44b 109 Pfam PF05957 Bacterial protein of unknown function (DUF883) 13 109 8.7E-35 T 31-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 Y89_0617 be977c55ea51887b7df3ec58d1e0905f 106 Pfam PF10761 Protein of unknown function (DUF2590) 6 104 2.2E-38 T 31-10-2018 IPR019697 Bacteriophage HP1, Orf28 Y89_5702 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 Pfam PF07690 Major Facilitator Superfamily 52 360 2.0E-39 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_5702 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 102 118 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Y89_5702 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 SUPERFAMILY SSF103473 40 424 1.31E-67 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_5702 e762ba4c1fcce3fb42abd5b4c9e0f49f 438 Gene3D G3DSA:1.20.1250.20 41 423 5.8E-54 T 31-10-2018 Y89_2838 99ddd2da7d4ffb4dce23a5d3b47601ed 252 Pfam PF09850 Type VI secretion system protein DotU 73 227 4.2E-30 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_2838 99ddd2da7d4ffb4dce23a5d3b47601ed 252 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 21 233 3.0E-36 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU Y89_2838 99ddd2da7d4ffb4dce23a5d3b47601ed 252 Gene3D G3DSA:1.25.40.590 14 189 5.4E-29 T 31-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily Y89_3483 5f41706b0f4003bdaa2df448e3a86bb0 154 SUPERFAMILY SSF54001 7 100 2.99E-6 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Y89_3483 5f41706b0f4003bdaa2df448e3a86bb0 154 Gene3D G3DSA:3.90.1720.10 3 154 1.3E-75 T 31-10-2018 Y89_2860 d8bda7abc7a2a68e494df93b98ac0409 229 PIRSF PIRSF028111 1 229 2.2E-86 T 31-10-2018 IPR016868 Bacteriophage B3, Orf5 Y89_2860 d8bda7abc7a2a68e494df93b98ac0409 229 Pfam PF10979 Protein of unknown function (DUF2786) 5 45 3.8E-15 T 31-10-2018 IPR024498 Domain of unknown function DUF2786 Y89_1566 17b341176dee7ffa3ef1cc41de27c208 112 Pfam PF08888 HopJ type III effector protein 4 108 2.7E-38 T 31-10-2018 IPR014984 HopJ type III effector protein Y89_1566 17b341176dee7ffa3ef1cc41de27c208 112 Gene3D G3DSA:3.20.160.10 1 111 9.8E-39 T 31-10-2018 IPR038604 Type III effector HopJ superfamily Y89_0986 71616612c41b1236bb81599ed795b5e3 244 Pfam PF12698 ABC-2 family transporter protein 53 214 6.0E-10 T 31-10-2018 Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 SUPERFAMILY SSF56801 16 552 4.58E-157 T 31-10-2018 Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 Pfam PF13193 AMP-binding enzyme C-terminal domain 465 540 1.6E-17 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 Pfam PF00501 AMP-binding enzyme 24 456 2.5E-103 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 Gene3D G3DSA:3.30.300.310 453 553 3.1E-32 T 31-10-2018 Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 ProSitePatterns PS00455 Putative AMP-binding domain signature. 206 217 - T 31-10-2018 IPR020845 AMP-binding, conserved site Y89_2633 edc27d4998fe2061f20a5701b1919ed1 564 Gene3D G3DSA:3.40.50.12780 14 452 3.4E-118 T 31-10-2018 Y89_5921 8e98dc022c2d4c117a5d9ec34fde1290 139 Pfam PF03748 Flagellar basal body-associated protein FliL 37 138 3.8E-21 T 31-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Y89_1961 dee3d0a070d1a6388161a39ad95bba8a 456 Pfam PF16933 Putative exopolysaccharide Exporter (EPS-E) 1 452 9.9E-158 T 31-10-2018 IPR031617 Putative exopolysaccharide exporter Y89_1776 c8656c15a05ea757b2ac3836d695538e 453 SUPERFAMILY SSF53474 88 419 1.11E-20 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_1011 97f44123089d6ace3dc25523fb9db5da 236 Pfam PF04172 LrgB-like family 21 233 1.3E-72 T 31-10-2018 IPR007300 CidB/LrgB family Y89_5391 80baf7e881ac3c87c455dc316ca5e1ec 188 Pfam PF06042 Nucleotidyltransferase 28 179 1.5E-50 T 31-10-2018 IPR009267 Putative nucleotidyltransferase Y89_2708 1f93cc003e97038ad2d19d79e1c63af9 146 Pfam PF13586 Transposase DDE domain 50 134 4.7E-19 T 31-10-2018 IPR025668 Transposase DDE domain Y89_2338 64a5ea4c7c4652532e712d4d3b6ce52d 127 Pfam PF04956 TrbC/VIRB2 family 28 117 1.1E-23 T 31-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 Y89_3146 efc2e8d09c95df4f92238469e421112c 174 Pfam PF13628 Domain of unknown function (DUF4142) 34 167 1.2E-40 T 31-10-2018 IPR025419 Domain of unknown function DUF4142 Y89_3174 d60be0036748cf9e89ac23fb549b8d54 132 Gene3D G3DSA:1.20.1270.360 31 132 9.3E-44 T 31-10-2018 Y89_3174 d60be0036748cf9e89ac23fb549b8d54 132 Pfam PF03860 Domain of Unknown Function (DUF326) 111 128 5.2E-5 T 31-10-2018 IPR005560 Protein of unknown function DUF326 Y89_5325 acc69feb8deb022ec8329122c4db7719 149 Pfam PF14248 Domain of unknown function (DUF4345) 4 120 1.8E-12 T 31-10-2018 IPR025597 Protein of unknown function DUF4345 Y89_1101 3748ca3e1a7eb42f10777e4c630a0221 455 Pfam PF07044 Protein of unknown function (DUF1329) 85 450 2.0E-158 T 31-10-2018 IPR010752 Protein of unknown function DUF1329 Y89_3468 46dac0a665b6a8a9cf71106a0f9b1313 275 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 13 250 3.2E-103 T 31-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 Y89_3468 46dac0a665b6a8a9cf71106a0f9b1313 275 Gene3D G3DSA:3.90.1200.10 87 240 1.3E-5 T 31-10-2018 Y89_3468 46dac0a665b6a8a9cf71106a0f9b1313 275 SUPERFAMILY SSF56112 25 254 3.06E-30 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily Y89_2319 cecc2c0024f9dbc3ba82e0b1ae24f65b 268 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 151 249 1.9E-31 T 31-10-2018 IPR018754 Protein of unknown function DUF2285 Y89_1673 cb0e844a7902dd8985a7a3ebd81802ae 388 Gene3D G3DSA:1.20.1250.20 195 376 1.7E-15 T 31-10-2018 Y89_1673 cb0e844a7902dd8985a7a3ebd81802ae 388 Pfam PF07690 Major Facilitator Superfamily 10 310 8.4E-36 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1673 cb0e844a7902dd8985a7a3ebd81802ae 388 SUPERFAMILY SSF103473 3 373 6.02E-50 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_1673 cb0e844a7902dd8985a7a3ebd81802ae 388 Gene3D G3DSA:1.20.1250.20 2 189 6.2E-22 T 31-10-2018 Y89_1799 ced4b293c979f4678ece13eb5b4c459f 105 Pfam PF06127 Protein of unknown function (DUF962) 9 102 6.4E-38 T 31-10-2018 IPR009305 Protein of unknown function DUF962 Y89_4607 feb6eca4df0a05841180eaf64be972d6 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 3.0E-137 T 31-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Y89_5745 7b0ca062a6b8cf9f9fbb219b6bda6e6a 153 Pfam PF03682 Uncharacterised protein family (UPF0158) 1 152 7.8E-57 T 31-10-2018 IPR005361 Uncharacterised protein family UPF0158 Y89_5458 18f9f1b2ba022537dbed185fd2c74e21 567 Gene3D G3DSA:3.30.420.240 339 520 5.8E-6 T 31-10-2018 Y89_5458 18f9f1b2ba022537dbed185fd2c74e21 567 Gene3D G3DSA:3.40.50.300 47 234 1.5E-30 T 31-10-2018 Y89_5458 18f9f1b2ba022537dbed185fd2c74e21 567 PIRSF PIRSF007056 20 556 6.9E-228 T 31-10-2018 IPR012036 Bacteriophage Mu, Gp28 Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 395 463 2.0E-8 T 31-10-2018 IPR003399 Mce/MlaD Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 42 131 6.9E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 280 369 2.5E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 156 216 4.7E-11 T 31-10-2018 IPR003399 Mce/MlaD Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 516 602 3.8E-10 T 31-10-2018 IPR003399 Mce/MlaD Y89_3060 2f3767a6c7ea4f7d6b5035131add9230 767 Pfam PF02470 MlaD protein 631 691 2.8E-7 T 31-10-2018 IPR003399 Mce/MlaD Y89_4163 a441fb16cf0ec1c7bad2dc191d099e24 199 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 8.0E-57 T 31-10-2018 IPR009698 Protein of unknown function DUF1282 Y89_5240 6e66bac66aa256a23a9779c2ae6321f6 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 225 7.5E-15 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Y89_5240 6e66bac66aa256a23a9779c2ae6321f6 329 Gene3D G3DSA:3.40.50.720 1 329 4.3E-117 T 31-10-2018 Y89_5240 6e66bac66aa256a23a9779c2ae6321f6 329 SUPERFAMILY SSF51735 3 326 2.86E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily Y89_5250 70d51b58d47bcc95b17720f4e3257d25 195 Pfam PF03923 Uncharacterized lipoprotein 39 192 7.7E-12 T 31-10-2018 IPR005619 Uncharacterised protein family, YajG Y89_5951 09b02508b4446bef68a4bc20fbbd606d 358 Pfam PF06580 Histidine kinase 163 241 6.1E-23 T 31-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Y89_5085 04114e6988d789000f9cbd2fb4501aad 569 TIGRFAM TIGR02520 pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family 57 567 2.0E-160 T 31-10-2018 IPR013359 Pilus formation type IVB, outer membrane PilN Y89_5085 04114e6988d789000f9cbd2fb4501aad 569 Pfam PF00263 Bacterial type II and III secretion system protein 401 567 9.5E-14 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 Y89_5085 04114e6988d789000f9cbd2fb4501aad 569 Pfam PF07655 Secretin N-terminal domain 213 300 1.2E-12 T 31-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 Y89_4027 2ed90014999ce20ee8b6aa3b61d05dbd 110 Pfam PF05957 Bacterial protein of unknown function (DUF883) 19 109 1.2E-24 T 31-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 Y89_4944 ea6704317e9c17d62d63c13d47b2e99c 265 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 15 262 8.8E-93 T 31-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Y89_4944 ea6704317e9c17d62d63c13d47b2e99c 265 Pfam PF02405 Permease MlaE 49 260 3.7E-77 T 31-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Y89_0274 ad568c2230dc37c60b2b26b901ef17b1 90 Pfam PF11275 Protein of unknown function (DUF3077) 18 78 1.7E-13 T 31-10-2018 IPR021427 Protein of unknown function DUF3077 Y89_3238 79d10ced14483dcd6cbb290ce5cfebef 1195 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 416 481 1.8E-11 T 31-10-2018 IPR013491 Caudovirus, tape measure, N-terminal Y89_4879 fabab032c68464c1bdc77a7841fa0999 309 Pfam PF04338 Protein of unknown function, DUF481 102 309 1.2E-48 T 31-10-2018 IPR007433 Protein of unknown function DUF481 Y89_0625 ca9cf28a3ad058e156b66821b4c607aa 371 Pfam PF10758 Protein of unknown function (DUF2586) 4 364 2.4E-146 T 31-10-2018 IPR019694 Bacteriophage HP1, Orf23 Y89_2324 8d747e35cf44f0e9638eae7131abf65b 181 Pfam PF11000 Protein of unknown function (DUF2840) 32 178 9.8E-61 T 31-10-2018 IPR021263 Protein of unknown function DUF2840 Y89_5938 883823d30442419f30121cb07980e5f0 252 Pfam PF03741 Integral membrane protein TerC family 14 203 5.4E-51 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Y89_2437 5cb33d209e05b05d3d4dc47bf6fdf3e1 352 Pfam PF01594 AI-2E family transporter 14 339 1.2E-52 T 31-10-2018 IPR002549 Transmembrane protein TqsA-like Y89_1131 68c6b451c3e06a836f2d5e3b373f930a 66 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 6.0E-23 T 31-10-2018 IPR012451 Protein of unknown function DUF1656 Y89_1037 d6541582194c0a2ceade3731a3fbed45 253 Pfam PF02698 DUF218 domain 81 243 1.4E-26 T 31-10-2018 IPR003848 Domain of unknown function DUF218 Y89_0925 1caaa87e302e4a29bcb73647bff84733 434 Gene3D G3DSA:2.40.160.180 23 427 3.2E-60 T 31-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily Y89_0925 1caaa87e302e4a29bcb73647bff84733 434 Pfam PF04966 Carbohydrate-selective porin, OprB family 64 427 5.7E-68 T 31-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 Y89_6392 f1d5479686f3821f7c1f0a207fe0c4c6 128 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 13 124 4.6E-40 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_6392 f1d5479686f3821f7c1f0a207fe0c4c6 128 Pfam PF11990 Protein of unknown function (DUF3487) 11 125 1.1E-36 T 31-10-2018 IPR021877 Protein of unknown function DUF3487 Y89_1642 894fdf0f4db95089f4384372173a9224 112 ProDom PD052090 YDCA PRECURSOR SIGNAL ECS2024 8 57 2.0E-20 T 31-10-2018 Y89_4993 6a36245a22f93aacf9f4660fbe66bad9 210 Pfam PF01810 LysE type translocator 12 206 7.7E-37 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_4993 6a36245a22f93aacf9f4660fbe66bad9 210 PIRSF PIRSF006324 2 209 1.1E-55 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Y89_2341 82965d194240056f6ac3880b6ce31583 252 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 12 250 2.5E-66 T 31-10-2018 IPR014147 Type IV conjugative transfer protein TrbJ Y89_2341 82965d194240056f6ac3880b6ce31583 252 SUPERFAMILY SSF101082 36 212 2.88E-6 T 31-10-2018 Y89_2670 e4e3e6599580022b9717e352cd3322a9 428 SUPERFAMILY SSF56954 11 422 8.63E-80 T 31-10-2018 Y89_2670 e4e3e6599580022b9717e352cd3322a9 428 Pfam PF02321 Outer membrane efflux protein 43 213 6.8E-26 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2670 e4e3e6599580022b9717e352cd3322a9 428 Pfam PF02321 Outer membrane efflux protein 246 420 4.6E-27 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Y89_2670 e4e3e6599580022b9717e352cd3322a9 428 Gene3D G3DSA:1.20.1600.10 31 424 3.4E-70 T 31-10-2018 Y89_6393 8766f32a41826b02897eeb21ea0d8ba9 219 Pfam PF11444 Protein of unknown function (DUF2895) 7 204 3.5E-80 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_6393 8766f32a41826b02897eeb21ea0d8ba9 219 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 3 205 6.0E-95 T 31-10-2018 IPR021548 Protein of unknown function DUF2895 Y89_2318 209ffe5d614aae0ae0d9b78173a37e94 115 Pfam PF11171 Protein of unknown function (DUF2958) 4 114 3.8E-43 T 31-10-2018 IPR021341 Protein of unknown function DUF2958 Y89_1947 d99edd25046ccee780237a81fc736dbb 164 Pfam PF14316 Domain of unknown function (DUF4381) 6 162 8.2E-45 T 31-10-2018 IPR025489 Protein of unknown function (DUF4381 Y89_1071 0664011bc649e2a40909a31efdd6cde3 237 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 234 1.5E-66 T 31-10-2018 IPR018648 Protein of unknown function DUF2076 Y89_5926 95b97c4ee6bc4fee9657a5aa81983431 662 Pfam PF01757 Acyltransferase family 8 326 9.7E-30 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Y89_2630 cf824ca01cc5e5cc6d6b1754b1d7d7cc 180 Pfam PF16304 Domain of unknown function (DUF4946) 26 179 6.6E-65 T 31-10-2018 IPR032543 Protein of unknown function DUF4946 Y89_4856 b1890bbc84f5eefd09bb1ac704f70578 190 Pfam PF04011 LemA family 9 185 5.1E-57 T 31-10-2018 IPR007156 LemA Y89_4856 b1890bbc84f5eefd09bb1ac704f70578 190 SUPERFAMILY SSF140478 26 177 3.01E-45 T 31-10-2018 IPR023353 LemA-like domain superfamily Y89_4856 b1890bbc84f5eefd09bb1ac704f70578 190 Gene3D G3DSA:1.20.1440.20 16 185 2.6E-50 T 31-10-2018 IPR023353 LemA-like domain superfamily Y89_2077 1cd20f20ab9d88b61f8b3e1ca9817a4f 1248 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 1 1246 0.0 T 31-10-2018 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 Y89_2077 1cd20f20ab9d88b61f8b3e1ca9817a4f 1248 Pfam PF02514 CobN/Magnesium Chelatase 138 1231 0.0 T 31-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Y89_0059 a5c0269377966aa47a6f5c363d51a44b 553 SUPERFAMILY SSF53182 210 507 6.54E-11 T 31-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 Y89_4703 106b826c00259d8541540d7371a26ae5 391 Gene3D G3DSA:1.20.1250.20 3 385 8.7E-43 T 31-10-2018 Y89_4703 106b826c00259d8541540d7371a26ae5 391 SUPERFAMILY SSF103473 3 383 2.09E-51 T 31-10-2018 IPR036259 MFS transporter superfamily Y89_4703 106b826c00259d8541540d7371a26ae5 391 Pfam PF07690 Major Facilitator Superfamily 8 317 3.0E-39 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Y89_1978 647f0be76057b411ed207e60bbe866f0 126 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 14 123 2.1E-19 T 31-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III Y89_5918 7ab4c2f399ce417a01f55705b2501bf0 374 Pfam PF12698 ABC-2 family transporter protein 28 362 1.5E-29 T 31-10-2018 Y89_1237 659749fbc0a916b06d20276b639f7338 471 Pfam PF03929 PepSY-associated TM region 16 410 1.1E-70 T 31-10-2018 IPR005625 PepSY-associated TM protein Y89_1237 659749fbc0a916b06d20276b639f7338 471 Pfam PF03413 Peptidase propeptide and YPEB domain 299 355 7.0E-4 T 31-10-2018 IPR025711 PepSY domain Y89_5457 bb326d1f71e4173dfb9d0bf82c2f8ab3 492 Pfam PF06074 Protein of unknown function (DUF935) 51 480 3.0E-80 T 31-10-2018 IPR009279 Protein of unknown function DUF935 Y89_2351 49dbe38511d9d5b078c118cd4039f9eb 357 Pfam PF14072 DNA-sulfur modification-associated 11 166 2.9E-16 T 31-10-2018 IPR017642 DNA sulphur modification protein DndB Y89_2351 49dbe38511d9d5b078c118cd4039f9eb 357 TIGRFAM TIGR03187 DGQHR: DGQHR domain 11 290 6.1E-39 T 31-10-2018 IPR017601 DGQHR-containing domain Y89_3703 d712c2272dc973fe4ed746fc72187f29 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 7.5E-11 T 31-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 Y89_3703 d712c2272dc973fe4ed746fc72187f29 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 28 1.5E-8 T 31-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 Y89_1056 5dec418e6eecf9313b0989b71b9ae05e 130 SUPERFAMILY SSF46458 5 130 3.2E-34 T 31-10-2018 IPR009050 Globin-like superfamily Y89_1056 5dec418e6eecf9313b0989b71b9ae05e 130 Gene3D G3DSA:1.10.490.10 1 130 6.4E-38 T 31-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 Y89_4781 842cbaa3b036938ca21b8ea682dfce5c 557 Pfam PF09977 Putative Tad-like Flp pilus-assembly 55 157 2.7E-8 T 31-10-2018 IPR018705 Domain of unknown function DUF2134, membrane Y89_1032 95345d610ae3968f7f6db3a07e3cacf1 50 Pfam PF03889 Domain of unknown function 5 40 2.3E-18 T 31-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 Y89_6032 c48bac96a93b19ede0109e86c4679b48 488 Pfam PF01554 MatE 244 409 2.8E-30 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_6032 c48bac96a93b19ede0109e86c4679b48 488 Pfam PF01554 MatE 18 176 1.8E-21 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_6032 c48bac96a93b19ede0109e86c4679b48 488 PIRSF PIRSF006603 5 455 7.0E-53 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_6032 c48bac96a93b19ede0109e86c4679b48 488 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 423 1.2E-66 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Y89_5470 1a8e28946baab976cf4f57021eae8e68 76 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 14 68 8.2E-25 T 31-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family Y89_3366 bcdf866463d980a5d26ede08572b770f 191 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 3 181 1.3E-30 T 31-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Y89_3366 bcdf866463d980a5d26ede08572b770f 191 Pfam PF04973 Nicotinamide mononucleotide transporter 3 181 9.5E-56 T 31-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Y89_5426 d5f0ed18b65dc7117d7e99e91a26cc3c 309 Pfam PF00561 alpha/beta hydrolase fold 33 135 1.2E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Y89_5426 d5f0ed18b65dc7117d7e99e91a26cc3c 309 SUPERFAMILY SSF53474 27 305 2.78E-49 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_5426 d5f0ed18b65dc7117d7e99e91a26cc3c 309 Gene3D G3DSA:3.40.50.1820 25 309 4.9E-88 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold Y89_2418 9d39158d53036456211213add84edc79 194 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 88 175 5.0E-6 T 31-10-2018 IPR034756 Type II secretion system (T2SS), protein M subtype b Y89_1588 b5c1ff88c2e0021dd5cd6417ed66d951 270 Pfam PF13369 Transglutaminase-like superfamily 37 184 2.4E-36 T 31-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Y89_3564 085d67ee6e1b19f09bdbedd3dbda1db4 179 Gene3D G3DSA:2.40.70.10 24 159 5.1E-44 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_3564 085d67ee6e1b19f09bdbedd3dbda1db4 179 SUPERFAMILY SSF50630 27 165 6.35E-40 T 31-10-2018 IPR021109 Aspartic peptidase domain superfamily Y89_3564 085d67ee6e1b19f09bdbedd3dbda1db4 179 Pfam PF05618 Putative ATP-dependant zinc protease 27 168 2.9E-51 T 31-10-2018 Y89_1057 4522eef0e41926de2de81533b838f9db 69 Pfam PF10981 Protein of unknown function (DUF2788) 14 60 3.5E-22 T 31-10-2018 IPR021249 Protein of unknown function DUF2788 Y89_6187 c5f88857c998251441d7a64baa2aa033 67 Pfam PF06568 Domain of unknown function (DUF1127) 22 57 7.7E-10 T 31-10-2018 IPR009506 Protein of unknown function DUF1127 Y89_1779 98120d9a164655b78d9bc25d2e1ddea7 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.7E-33 T 31-10-2018 IPR007436 Protein of unknown function DUF485 Y89_6199 a79409ac064e621eb21ff1d38fff559e 380 Pfam PF01757 Acyltransferase family 7 341 3.9E-26 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Y89_5446 f37ed27359093490bd3345b7c1d0251e 250 PIRSF PIRSF028589 1 248 1.4E-47 T 31-10-2018 IPR016893 Protein of unknown function UCP028589 Y89_5695 a70d0ba3a60bedd40c8b3953b0745fbb 486 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 472 46.297 T 31-10-2018 IPR003846 Uncharacterised protein family UPF0061 Y89_5695 a70d0ba3a60bedd40c8b3953b0745fbb 486 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 6 455 2.1E-151 T 31-10-2018 IPR003846 Uncharacterised protein family UPF0061 Y89_4567 708a55e91688d88f47d9564d932c513e 271 Pfam PF01925 Sulfite exporter TauE/SafE 6 268 1.3E-37 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_0114 e6c8a07144b29fbc92011bb2f9af572e 523 Pfam PF00916 Sulfate permease family 16 386 5.9E-63 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Y89_1238 1b47d49a892ebdb7cce85b10a9cbede4 131 Pfam PF14248 Domain of unknown function (DUF4345) 7 121 5.3E-16 T 31-10-2018 IPR025597 Protein of unknown function DUF4345 Y89_4442 ba46943f1446c012c8b63a5893e18252 634 Pfam PF02705 K+ potassium transporter 24 556 3.6E-205 T 31-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 Y89_4442 ba46943f1446c012c8b63a5893e18252 634 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 15 634 34.238 T 31-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup Y89_5270 dbf0370b941acdccd432cc0a7ff78896 299 SMART SM00422 11 80 1.8E-22 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5270 dbf0370b941acdccd432cc0a7ff78896 299 Pfam PF13411 MerR HTH family regulatory protein 12 78 8.5E-18 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Y89_5270 dbf0370b941acdccd432cc0a7ff78896 299 Gene3D G3DSA:1.10.1240.10 93 166 3.3E-7 T 31-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Y89_5270 dbf0370b941acdccd432cc0a7ff78896 299 SUPERFAMILY SSF46955 12 109 8.24E-21 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5270 dbf0370b941acdccd432cc0a7ff78896 299 Gene3D G3DSA:1.10.1660.10 7 79 2.1E-24 T 31-10-2018 Y89_4976 270580b789722b01220fc646a97333d6 128 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 117 1.9E-26 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Y89_4976 270580b789722b01220fc646a97333d6 128 Gene3D G3DSA:1.20.1290.10 3 123 1.2E-42 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_4976 270580b789722b01220fc646a97333d6 128 SUPERFAMILY SSF69118 5 119 2.09E-39 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Y89_1777 72b1692138093c6e467f4e807a46aeaf 73 Pfam PF09834 Predicted membrane protein (DUF2061) 1 52 7.7E-22 T 31-10-2018 IPR018638 Domain of unknown function DUF2061, membrane Y89_2288 ff8d0b21a6f315c927d8e971b5fc7644 77 Pfam PF12021 Protein of unknown function (DUF3509) 7 68 1.3E-11 T 31-10-2018 IPR021898 Protein of unknown function DUF3509 Y89_2905 366d6c19128c6256b07a9a3f5c41e764 736 Pfam PF13550 Putative phage tail protein 213 358 2.9E-10 T 31-10-2018 IPR032876 Tip attachment protein J Y89_1187 f0dbdb60d288d96a3e7fab1190ace8d0 296 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 277 2.4E-31 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_5057 d14d59eb76738384fb29f96f4bbef28b 233 Pfam PF10979 Protein of unknown function (DUF2786) 5 44 9.7E-10 T 31-10-2018 IPR024498 Domain of unknown function DUF2786 Y89_5057 d14d59eb76738384fb29f96f4bbef28b 233 PIRSF PIRSF028111 1 231 2.1E-44 T 31-10-2018 IPR016868 Bacteriophage B3, Orf5 Y89_1751 dfc188dcd5f67dd19f606c38b4ce5e04 143 Pfam PF06803 Protein of unknown function (DUF1232) 67 102 1.7E-13 T 31-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 Y89_5086 865d8a77afdd6265114aa84e35bde1d9 441 Pfam PF06864 Pilin accessory protein (PilO) 23 440 5.5E-92 T 31-10-2018 IPR009663 Pilin accessory predicted Y89_4627 f3004b89b202be8ad07daadbb24a65fd 70 Pfam PF14375 Cysteine-rich CWC 10 62 8.4E-14 T 31-10-2018 IPR032720 Cysteine-rich CWC Y89_1877 ac6182524b1bd587f73183bcd908d916 339 Pfam PF00953 Glycosyl transferase family 4 76 227 1.2E-33 T 31-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Y89_1255 b6bdbe294267f7d7c8911b1a06a44819 298 Pfam PF13557 Putative MetA-pathway of phenol degradation 68 294 1.8E-28 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Y89_1910 54b9dc6345f00a3994205900f151ca29 171 Pfam PF02674 Colicin V production protein 2 135 1.9E-33 T 31-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Y89_5493 ea6c9bf23e68b348a02456554e545fd6 258 PIRSF PIRSF029691 1 258 3.7E-116 T 31-10-2018 IPR016934 Uncharacterised conserved protein UCP029691 Y89_6171 eaf54c48c02d2a844a7ea61c34f704da 149 Gene3D G3DSA:3.40.630.30 2 148 2.6E-37 T 31-10-2018 Y89_6171 eaf54c48c02d2a844a7ea61c34f704da 149 SUPERFAMILY SSF55729 5 136 6.81E-30 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase Y89_6171 eaf54c48c02d2a844a7ea61c34f704da 149 Pfam PF00583 Acetyltransferase (GNAT) family 42 135 2.2E-13 T 31-10-2018 IPR000182 GNAT domain Y89_0401 ebbf9239c6157df9529a9cfa710c427c 125 Pfam PF04241 Protein of unknown function (DUF423) 19 105 1.1E-29 T 31-10-2018 IPR006696 Protein of unknown function DUF423 Y89_5238 66d3938ce389346054971e86aadfb844 192 Pfam PF01169 Uncharacterized protein family UPF0016 103 178 8.1E-22 T 31-10-2018 IPR001727 Gdt1 family Y89_5238 66d3938ce389346054971e86aadfb844 192 Pfam PF01169 Uncharacterized protein family UPF0016 9 79 2.3E-19 T 31-10-2018 IPR001727 Gdt1 family Y89_2394 2a0a527696c2ec8817989b3be5885bb2 166 Pfam PF03061 Thioesterase superfamily 23 95 1.8E-17 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Y89_2394 2a0a527696c2ec8817989b3be5885bb2 166 SUPERFAMILY SSF54637 5 156 9.1E-45 T 31-10-2018 IPR029069 HotDog domain superfamily Y89_2394 2a0a527696c2ec8817989b3be5885bb2 166 Gene3D G3DSA:3.10.129.10 2 151 1.0E-56 T 31-10-2018 Y89_4231 b623f9b0f1e58ee6a6cffba1b42da199 190 Pfam PF13689 Domain of unknown function (DUF4154) 48 185 1.6E-32 T 31-10-2018 IPR025293 YfiR-like Y89_6260 a4aa435cbe1ed58a7ee40697075fe2fc 247 Gene3D G3DSA:1.25.40.10 31 172 2.5E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_6260 a4aa435cbe1ed58a7ee40697075fe2fc 247 SUPERFAMILY SSF48452 32 106 1.68E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Y89_2807 402c9ac51b5c2fd62a2edd4d3d060e89 537 SUPERFAMILY SSF48056 244 437 3.11E-7 T 31-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 Y89_1274 97319d34c8c025d500687e9b9f5f807e 174 Gene3D G3DSA:2.160.10.10 1 172 2.4E-63 T 31-10-2018 Y89_1274 97319d34c8c025d500687e9b9f5f807e 174 SUPERFAMILY SSF51161 4 167 9.01E-48 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily Y89_1274 97319d34c8c025d500687e9b9f5f807e 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 120 6.6E-9 T 31-10-2018 IPR001451 Hexapeptide repeat Y89_5845 8b58ffb269bf37ab787fd274cb0d19b0 71 SUPERFAMILY SSF46955 20 69 5.13E-7 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily Y89_5845 8b58ffb269bf37ab787fd274cb0d19b0 71 Pfam PF12728 Helix-turn-helix domain 21 69 3.7E-8 T 31-10-2018 Y89_0843 a5eee9703e5944fbfc707bd00c2b91b0 431 Gene3D G3DSA:2.40.160.10 29 431 1.2E-171 T 31-10-2018 IPR023614 Porin domain superfamily Y89_0843 a5eee9703e5944fbfc707bd00c2b91b0 431 Pfam PF03573 outer membrane porin, OprD family 32 429 4.3E-142 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_4313 1e18c914e6d02e944ca98c9ceb729fce 99 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 4.8E-19 T 31-10-2018 IPR009525 Protein of unknown function DUF1145 Y89_3711 a7d5be39d68bf199a53676badec39e21 268 Pfam PF16234 Domain of unknown function (DUF4892) 20 201 7.5E-98 T 31-10-2018 IPR032608 Protein of unknown function DUF4892 Y89_0150 f9f9a41bbaf99ba39079742df660c095 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 338 3.2E-47 T 31-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Y89_2342 26e461f22e885944c2d5352b72056b50 394 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 38 255 1.3E-49 T 31-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 Y89_2342 26e461f22e885944c2d5352b72056b50 394 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 1 304 6.4E-66 T 31-10-2018 IPR014150 Conjugal transfer, TrbL Y89_2390 2efd4260201f53ae38e151324c09ecd3 93 TIGRFAM TIGR03510 XapX: XapX domain 4 48 3.6E-19 T 31-10-2018 IPR020017 XapX domain Y89_2390 2efd4260201f53ae38e151324c09ecd3 93 Pfam PF07235 Protein of unknown function (DUF1427) 2 83 1.8E-36 T 31-10-2018 IPR009872 Protein of unknown function DUF1427 Y89_4806 8e6819d70f07b4bbb7f832f552a13f74 427 Pfam PF14258 Domain of unknown function (DUF4350) 44 113 3.9E-13 T 31-10-2018 IPR025646 Domain of unknown function DUF4350 Y89_4779 6dbf97043786c4af24e014969fb3ed4d 160 Pfam PF01478 Type IV leader peptidase family 5 109 1.6E-9 T 31-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Y89_4779 6dbf97043786c4af24e014969fb3ed4d 160 Gene3D G3DSA:1.20.120.1220 1 120 1.6E-5 T 31-10-2018 Y89_2655 07cbd2c2336f34459f28b5efee841085 311 Pfam PF01148 Cytidylyltransferase family 43 307 1.0E-69 T 31-10-2018 Y89_3802 f56de7c99a0520cb6f438067a40a8eb0 179 Pfam PF03691 Uncharacterised protein family (UPF0167) 5 178 2.9E-61 T 31-10-2018 IPR005363 Uncharacterised protein family UPF0167 Y89_1345 5df90524b3134292c18618916d9efde6 231 Pfam PF06904 Extensin-like protein C-terminus 60 231 5.3E-61 T 31-10-2018 IPR009683 Extensin-like, C-terminal Y89_2154 3d87d68b520b850cec3b02b4e46681b7 119 Pfam PF06127 Protein of unknown function (DUF962) 11 84 6.2E-7 T 31-10-2018 IPR009305 Protein of unknown function DUF962 Y89_1605 2ef33bb259949c4c2330d7a10c9c058b 95 Pfam PF12021 Protein of unknown function (DUF3509) 6 88 8.5E-28 T 31-10-2018 IPR021898 Protein of unknown function DUF3509 Y89_1438 aa17b6d24d16ce35874cc206d5237e35 416 Pfam PF03573 outer membrane porin, OprD family 25 414 2.0E-146 T 31-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 Y89_1438 aa17b6d24d16ce35874cc206d5237e35 416 Gene3D G3DSA:2.40.160.10 30 416 7.1E-167 T 31-10-2018 IPR023614 Porin domain superfamily Y89_5430 6c466c565e986b2beeed6945eadf6012 164 Pfam PF03692 Putative zinc- or iron-chelating domain 59 159 5.1E-16 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Y89_3409 dda3deae263e830ff22023f3bfdd5dea 408 Pfam PF10783 Protein of unknown function (DUF2599) 302 408 2.4E-27 T 31-10-2018 IPR019719 Protein of unknown function DUF2599 Y89_3505 14a314e4bd6e0f0b3971584e7092d659 259 Pfam PF01925 Sulfite exporter TauE/SafE 15 249 8.5E-41 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_5610 e2af6fc24fd60c84d424875127fe50f9 77 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 22 76 6.8E-21 T 31-10-2018 IPR019201 Protein of unknown function DUF2065 Y89_4514 2fb98bc99dd20bc0a355c02f349d5abd 246 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 9 225 3.4E-36 T 31-10-2018 Y89_4514 2fb98bc99dd20bc0a355c02f349d5abd 246 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 3 243 27.562 T 31-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 Y89_4957 ae2246a03e588b4c6941ed6f892dccd3 300 Pfam PF02535 ZIP Zinc transporter 155 295 1.2E-15 T 31-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Y89_2153 bacbbeca6f4aefa0046290419110b7bc 162 SUPERFAMILY SSF56524 40 161 3.27E-18 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Y89_0182 84ea393946abf940601efaae5c8a43ba 126 Pfam PF09345 Domain of unknown function (DUF1987) 6 122 2.2E-39 T 31-10-2018 IPR018530 Domain of unknown function DUF1987 Y89_5808 6e66549a3c9ccc887c388df69e2109d4 493 SUPERFAMILY SSF110296 145 482 3.66E-10 T 31-10-2018 Y89_2224 a32f8f98ff7d1f7198a5e53e482826ad 87 Pfam PF14357 Domain of unknown function (DUF4404) 7 87 4.0E-27 T 31-10-2018 IPR025516 Protein of unknown function DUF4404 Y89_6317 4efa60ff639c61384194cee50c3a3de2 119 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 108 1.8E-17 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Y89_6317 4efa60ff639c61384194cee50c3a3de2 119 Gene3D G3DSA:3.30.2310.20 1 114 1.2E-22 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Y89_5488 63c7471362658a784d4c618712bcb472 120 Pfam PF04138 GtrA-like protein 5 119 3.3E-23 T 31-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 Y89_6262 088ca2442e44231eb3e4939e98d88768 455 Pfam PF00120 Glutamine synthetase, catalytic domain 118 451 1.8E-105 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_6262 088ca2442e44231eb3e4939e98d88768 455 Gene3D G3DSA:3.30.590.10 120 455 2.7E-99 T 31-10-2018 Y89_6262 088ca2442e44231eb3e4939e98d88768 455 SUPERFAMILY SSF55931 118 453 4.91E-103 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Y89_6262 088ca2442e44231eb3e4939e98d88768 455 SUPERFAMILY SSF54368 9 109 6.54E-8 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_6262 088ca2442e44231eb3e4939e98d88768 455 SMART SM01230 117 373 1.5E-97 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Y89_5892 788a15d619e4b7479ee62fb10d395428 233 Pfam PF01914 MarC family integral membrane protein 6 214 2.4E-49 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y89_5892 788a15d619e4b7479ee62fb10d395428 233 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 214 3.9E-33 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Y89_4650 89b79fe00724d72131c51ce7b390604a 304 Pfam PF12101 Protein of unknown function (DUF3577) 5 120 2.0E-37 T 31-10-2018 IPR021960 Protein of unknown function DUF3577 Y89_4650 89b79fe00724d72131c51ce7b390604a 304 Pfam PF12101 Protein of unknown function (DUF3577) 132 257 4.5E-48 T 31-10-2018 IPR021960 Protein of unknown function DUF3577 Y89_2764 5d6b44577da604801ba2655e3864c943 181 Pfam PF16304 Domain of unknown function (DUF4946) 32 180 1.8E-69 T 31-10-2018 IPR032543 Protein of unknown function DUF4946 Y89_1968 4af6873c4983e76d0efc84d7c731789c 93 Pfam PF11197 Protein of unknown function (DUF2835) 25 91 1.4E-25 T 31-10-2018 IPR021363 Protein of unknown function DUF2835 Y89_6169 d60af3e1d113bf5690a24261399e292d 404 Pfam PF04143 Sulphur transport 54 380 2.9E-80 T 31-10-2018 IPR007272 Sulphur transport domain Y89_1173 4d850dd100758ff740a19cef2b1d7e43 250 Pfam PF01988 VIT family 32 242 1.5E-57 T 31-10-2018 IPR008217 Ccc1 family Y89_0366 95c5f0114ea4f355ac7c5ca879e9bf9e 461 Pfam PF11067 Protein of unknown function (DUF2868) 148 444 4.5E-89 T 31-10-2018 IPR021296 Protein of unknown function DUF2868 Y89_2896 544ab79fb38931c446971a3c4af80d14 250 PIRSF PIRSF028589 1 248 9.1E-48 T 31-10-2018 IPR016893 Protein of unknown function UCP028589 Y89_5301 6681b4301aa2dc8ea84657da9cfa9a68 206 Pfam PF04403 Paraquat-inducible protein A 43 198 5.5E-56 T 31-10-2018 IPR007498 Intermembrane transport protein PqiA-like Y89_4299 73eb7f97c65cd71f1475c578c6df03ab 112 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 102 8.0E-26 T 31-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Y89_1575 ad1fd0cd594759a79383270f16b315c4 129 Pfam PF03788 LrgA family 23 115 1.2E-24 T 31-10-2018 IPR005538 LrgA/CidA family GO:0016021 Y89_0111 118b3aff3d316b58c8b8e8b5006847a7 304 SUPERFAMILY SSF110296 74 285 2.35E-5 T 31-10-2018 Y89_2824 f4ae11b6a5cea2db882d34675be3fa09 131 Pfam PF14107 Domain of unknown function (DUF4280) 6 125 2.5E-27 T 31-10-2018 IPR025460 Protein of unknown function DUF4280 Y89_4474 e530113ea2d480ac2ac97a106acec421 212 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 65 184 4.0E-20 T 31-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Y89_0263 db50f31f88af3049f6adfc9ea13866da 233 Pfam PF06912 Protein of unknown function (DUF1275) 29 217 3.1E-32 T 31-10-2018 IPR010699 Protein of unknown function DUF1275 Y89_1973 e5442117c9c1700bb6b15fab40186e85 114 Pfam PF04320 Protein with unknown function (DUF469) 7 105 3.3E-36 T 31-10-2018 IPR007416 Protein of unknown function DUF469 Y89_5428 57d12964cd130070f6c9c17de2de2677 149 Pfam PF04657 Putative inner membrane exporter, YdcZ 8 144 1.1E-40 T 31-10-2018 IPR006750 Putative inner membrane exporter, YdcZ Y89_4505 34ccf896d23248e045e3eb525b1ca80b 339 Pfam PF10974 Protein of unknown function (DUF2804) 24 338 3.8E-76 T 31-10-2018 IPR021243 Protein of unknown function DUF2804 Y89_1954 897a4d7467c13b4c8f7a681bfa0fc6c0 328 Pfam PF13515 Fusaric acid resistance protein-like 199 317 8.5E-10 T 31-10-2018 Y89_0709 e07c36d19a70e93a125c58f86f2a3f9b 611 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 104 168 1.8E-7 T 31-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y89_0709 e07c36d19a70e93a125c58f86f2a3f9b 611 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 216 289 1.4E-19 T 31-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y89_0709 e07c36d19a70e93a125c58f86f2a3f9b 611 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 377 451 1.6E-24 T 31-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal Y89_1731 f402e87b3205de5bb75049cb672a801b 196 Pfam PF07681 DoxX 23 108 8.4E-22 T 31-10-2018 IPR032808 DoxX family Y89_0354 77e0bd2083c4a787ccb1090b21723f62 155 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 154 6.3E-60 T 31-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane Y89_2416 02159889095d449624d7e5cc6afc9107 359 Pfam PF03934 Type II secretion system (T2SS), protein K 138 275 1.2E-6 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Y89_0584 21e88aeb14493ef8a925616494677746 117 Pfam PF05656 Protein of unknown function (DUF805) 12 113 1.2E-32 T 31-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 Y89_5125 3346803298053fb7cd9f89b9b0ec56a3 501 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 5 490 1.3E-189 T 31-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 Y89_2016 2f741f0db61e33453f2a8109b5aec676 209 Pfam PF10972 Peptidoglycan-binding protein, CsiV 61 173 5.6E-19 T 31-10-2018 IPR021241 Peptidoglycan-binding protein, CsiV Y89_4880 943aeac7cdb8025ac666a5ab8d05cf9e 322 Pfam PF04338 Protein of unknown function, DUF481 120 322 2.2E-31 T 31-10-2018 IPR007433 Protein of unknown function DUF481 Y89_3145 a338625935794ddca1c618d2fbcb66cb 454 Pfam PF00999 Sodium/hydrogen exchanger family 338 442 1.3E-6 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_3145 a338625935794ddca1c618d2fbcb66cb 454 Pfam PF00999 Sodium/hydrogen exchanger family 11 276 2.2E-26 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Y89_4822 51ccafb6b8b97c20e4a9655e7421db84 203 Pfam PF11008 Protein of unknown function (DUF2846) 15 146 1.0E-33 T 31-10-2018 IPR022548 Domain of unknown function DUF2846 Y89_5171 a4041d29f3bd2b2423d85998f8e74521 154 PIRSF PIRSF003174 1 154 8.7E-70 T 31-10-2018 IPR010292 Uncharacterised protein family CreA Y89_5171 a4041d29f3bd2b2423d85998f8e74521 154 Pfam PF05981 CreA protein 23 150 2.6E-59 T 31-10-2018 IPR010292 Uncharacterised protein family CreA Y89_0123 e5f157e0e38dabc0df4c0865d7a8e83c 357 Pfam PF02628 Cytochrome oxidase assembly protein 13 320 1.3E-82 T 31-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 Y89_5349 b7ccbfbfb60333acb3cc61bb9a8e1a26 97 Pfam PF11006 Protein of unknown function (DUF2845) 23 94 5.7E-18 T 31-10-2018 IPR021268 Protein of unknown function DUF2845 Y89_5096 7d18a5bba77101a6108caec745760224 162 Pfam PF12101 Protein of unknown function (DUF3577) 7 136 4.0E-57 T 31-10-2018 IPR021960 Protein of unknown function DUF3577 Y89_2251 9ee15b94b794b02bcef65eadfc64d5de 131 PIRSF PIRSF029543 1 130 2.3E-57 T 31-10-2018 IPR016924 Uncharacterised conserved protein UCP029543 Y89_1200 e34f4e0703988cc0991631b5dd7f6559 165 Pfam PF06271 RDD family 14 151 2.1E-28 T 31-10-2018 IPR010432 RDD Y89_6283 4f5069d8d8f88cf18c60ee2a8df63b18 132 Pfam PF08905 Domain of unknown function (DUF1850) 21 105 1.5E-22 T 31-10-2018 IPR015001 Protein of unknown function DUF1850 Y89_5186 b5043e01717afb68fff9a58f69ffa637 618 Pfam PF13387 Domain of unknown function (DUF4105) 119 291 7.9E-61 T 31-10-2018 IPR025178 Domain of unknown function DUF4105 Y89_1252 a59ea68a39d62c6bb56eda506cfb7e4a 260 Pfam PF01925 Sulfite exporter TauE/SafE 25 252 2.7E-29 T 31-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Y89_3825 f84969c89ca1466fbb756c81df16318b 425 Pfam PF06181 Urate oxidase N-terminal 4 294 2.0E-128 T 31-10-2018 IPR010389 Urate oxidase N-terminal Y89_3482 1ea776d5e7414e770ba0c5447ffe15f2 172 Gene3D G3DSA:2.40.128.650 20 172 5.7E-86 T 31-10-2018 Y89_3637 d69071dbb83e1eb7e40dc19e41672cf6 158 Pfam PF07321 Type III secretion protein YscO 3 151 5.7E-46 T 31-10-2018 IPR009929 Type III secretion sytem,YscO Y89_5431 dab0ce63867cf71c73a428a390aff005 478 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 13 240 4.5E-18 T 31-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 Y89_4447 ea39c970bcfe4104d9491b520cc91fe5 179 Pfam PF13511 Domain of unknown function (DUF4124) 8 56 7.3E-10 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 Y89_3135 9dd31f8ca30d93c49f980170c18de9f9 95 Pfam PF10711 Hypothetical protein (DUF2513) 2 84 2.5E-17 T 31-10-2018 IPR019650 Protein of unknown function DUF2513 Y89_2649 3f6c51e53d669025f4c84155b9be9ff9 1221 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 900 1221 4.8E-59 T 31-10-2018 IPR007452 Translocation and assembly module TamB Y89_3105 5aafceee4d200023f55da18c602167db 69 Pfam PF13396 Phospholipase_D-nuclease N-terminal 21 59 5.9E-10 T 31-10-2018 IPR027379 Cardiolipin synthase N-terminal Y89_0407 207860e2caf7f3dc590ed15c4db8b659 107 Pfam PF11872 Protein of unknown function (DUF3392) 5 106 4.0E-41 T 31-10-2018 IPR021813 Protein of unknown function DUF3392 Y89_5429 0b0ee6b92f483e8d294abe51a98af183 411 Pfam PF08874 Domain of unknown function (DUF1835) 89 201 4.8E-14 T 31-10-2018 IPR014973 Protein of unknown function DUF1835 Y89_5134 b3802c82b6b4523fe44b017543ed37f1 460 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 35 448 3.3E-175 T 31-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 Y89_5329 61335bac7a38688e5aec3bf526e2070b 297 Pfam PF04228 Putative neutral zinc metallopeptidase 1 292 2.1E-136 T 31-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative Y89_4640 0c8a48c4659c47eb7d2d21ff94da0905 261 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 12 224 3.5E-88 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_4640 0c8a48c4659c47eb7d2d21ff94da0905 261 Pfam PF08900 Domain of unknown function (DUF1845) 11 221 1.8E-78 T 31-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Y89_5076 4845ca18b0beca776b5493355ad118df 182 Pfam PF11358 Protein of unknown function (DUF3158) 17 169 2.8E-61 T 31-10-2018 IPR021502 Protein of unknown function DUF3158 Y89_0953 f99db0ba5da20fc05df6a11125274bb2 192 Pfam PF11354 Protein of unknown function (DUF3156) 31 189 4.0E-55 T 31-10-2018 IPR021500 Protein of unknown function DUF3156 Y89_4409 a2ab1d4f2e5a5a7a605549d8244a3113 139 Pfam PF09842 Predicted membrane protein (DUF2069) 24 128 4.1E-31 T 31-10-2018 IPR018643 Protein of unknown function DUF2069, membrane Y89_4804 35fbccb431880e94f1a8ecdacaae3bdd 326 Pfam PF01944 Stage II sporulation protein M 110 290 8.3E-36 T 31-10-2018 IPR002798 Stage II sporulation protein M-like Y89_3897 2c1fc2fc5d678c0f2c9aeccffb71a57e 173 Pfam PF03748 Flagellar basal body-associated protein FliL 75 173 1.9E-23 T 31-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Y89_5485 e80d2870679ddcbef02bbe88ff4c5e42 187 Pfam PF06252 Protein of unknown function (DUF1018) 20 131 1.6E-20 T 31-10-2018 IPR009363 Bacteriophage Mu, Gp16 Y89_6314 db14c400ecfc2e09924ed4240c6fd027 511 Pfam PF07916 TraG-like protein, N-terminal region 10 484 1.8E-86 T 31-10-2018 IPR012931 TraG-like, N-terminal Y89_2539 dbb5608b3a24771f586d468832cddb82 455 Pfam PF07044 Protein of unknown function (DUF1329) 83 425 1.0E-109 T 31-10-2018 IPR010752 Protein of unknown function DUF1329