locus-tag class description CH92_00005 PF00308 Bacterial dnaA protein CH92_00005 PF08299 Bacterial dnaA protein helix-turn-helix CH92_00005 PF11638 DnaA N-terminal domain CH92_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CH92_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CH92_00010 PF02767 DNA polymerase III beta subunit, central domain CH92_00015 PF02463 RecF/RecN/SMC N terminal domain CH92_00020 PF18053 DNA gyrase B subunit insert domain CH92_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_00020 PF01751 Toprim domain CH92_00020 PF00204 DNA gyrase B CH92_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CH92_00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_00025 PF13192 Thioredoxin domain CH92_00040 PF02092 Glycyl-tRNA synthetase beta subunit CH92_00040 PF05746 DALR anticodon binding domain CH92_00045 PF02091 Glycyl-tRNA synthetase alpha subunit CH92_00050 PF03352 Methyladenine glycosylase CH92_00070 PF00005 ABC transporter CH92_00075 PF00528 Binding-protein-dependent transport system inner membrane component CH92_00080 PF00528 Binding-protein-dependent transport system inner membrane component CH92_00085 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_00090 PF00392 Bacterial regulatory proteins, gntR family CH92_00090 PF00155 Aminotransferase class I and II CH92_00095 PF00291 Pyridoxal-phosphate dependent enzyme CH92_00100 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH92_00105 PF00557 Metallopeptidase family M24 CH92_00105 PF01321 Creatinase/Prolidase N-terminal domain CH92_00110 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH92_00115 PF01037 Lrp/AsnC ligand binding domain CH92_00120 PF02592 Putative vitamin uptake transporter CH92_00125 PF00171 Aldehyde dehydrogenase family CH92_00130 PF00202 Aminotransferase class-III CH92_00135 PF02080 TrkA-C domain CH92_00135 PF02254 TrkA-N domain CH92_00140 PF01029 NusB family CH92_00140 PF01189 16S rRNA methyltransferase RsmB/F CH92_00145 PF02911 Formyl transferase, C-terminal domain CH92_00145 PF00551 Formyl transferase CH92_00150 PF01327 Polypeptide deformylase CH92_00155 PF01476 LysM domain CH92_00165 PF01300 Telomere recombination CH92_00170 PF00107 Zinc-binding dehydrogenase CH92_00170 PF08240 Alcohol dehydrogenase GroES-like domain CH92_00175 PF01218 Coproporphyrinogen III oxidase CH92_00180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH92_00180 PF08501 Shikimate dehydrogenase substrate binding domain CH92_00180 PF01488 Shikimate / quinate 5-dehydrogenase CH92_00195 PF00768 D-alanyl-D-alanine carboxypeptidase CH92_00210 PF00550 Phosphopantetheine attachment site CH92_00210 PF14765 Polyketide synthase dehydratase CH92_00210 PF16197 Ketoacyl-synthetase C-terminal extension CH92_00210 PF08240 Alcohol dehydrogenase GroES-like domain CH92_00210 PF08659 KR domain CH92_00210 PF02801 Beta-ketoacyl synthase, C-terminal domain CH92_00210 PF00109 Beta-ketoacyl synthase, N-terminal domain CH92_00210 PF00698 Acyl transferase domain CH92_00225 PF00072 Response regulator receiver domain CH92_00225 PF13188 PAS domain CH92_00225 PF08448 PAS fold CH92_00225 PF00512 His Kinase A (phospho-acceptor) domain CH92_00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_00235 PF07883 Cupin domain CH92_00265 PF07883 Cupin domain CH92_00290 PF00005 ABC transporter CH92_00290 PF00664 ABC transporter transmembrane region CH92_00300 PF03575 Peptidase family S51 CH92_00325 PF02798 Glutathione S-transferase, N-terminal domain CH92_00330 PF00248 Aldo/keto reductase family CH92_00355 PF00290 Tryptophan synthase alpha chain CH92_00360 PF00291 Pyridoxal-phosphate dependent enzyme CH92_00365 PF03466 LysR substrate binding domain CH92_00365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_00370 PF00082 Subtilase family CH92_00370 PF04151 Bacterial pre-peptidase C-terminal domain CH92_00375 PF16363 GDP-mannose 4,6 dehydratase CH92_00385 PF03275 UDP-galactopyranose mutase CH92_00395 PF00005 ABC transporter CH92_00395 PF00664 ABC transporter transmembrane region CH92_00400 PF13619 KTSC domain CH92_00405 PF07311 Dodecin CH92_00415 PF00296 Luciferase-like monooxygenase CH92_00450 PF13419 Haloacid dehalogenase-like hydrolase CH92_00455 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_00460 PF12833 Helix-turn-helix domain CH92_00460 PF02311 AraC-like ligand binding domain CH92_00465 PF13593 SBF-like CPA transporter family (DUF4137) CH92_00470 PF01432 Peptidase family M3 CH92_00485 PF01757 Acyltransferase family CH92_00490 PF04055 Radical SAM superfamily CH92_00495 PF00484 Carbonic anhydrase CH92_00500 PF00916 Sulfate permease family CH92_00500 PF01740 STAS domain CH92_00510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH92_00510 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CH92_00515 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_00520 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CH92_00525 PF00510 Cytochrome c oxidase subunit III CH92_00545 PF02628 Cytochrome oxidase assembly protein CH92_00550 PF01040 UbiA prenyltransferase family CH92_00555 PF02630 SCO1/SenC CH92_00560 PF07715 TonB-dependent Receptor Plug Domain CH92_00560 PF00593 TonB dependent receptor CH92_00565 PF05171 Haemin-degrading HemS.ChuX domain CH92_00575 PF01032 FecCD transport family CH92_00580 PF00005 ABC transporter CH92_00605 PF03180 NLPA lipoprotein CH92_00610 PF00528 Binding-protein-dependent transport system inner membrane component CH92_00615 PF09383 NIL domain CH92_00615 PF00005 ABC transporter CH92_00620 PF18011 C-terminal domain found in long catalases CH92_00620 PF06628 Catalase-related immune-responsive CH92_00620 PF00199 Catalase CH92_00625 PF01863 Protein of unknown function DUF45 CH92_00630 PF00950 ABC 3 transport family CH92_00635 PF00005 ABC transporter CH92_00640 PF01475 Ferric uptake regulator family CH92_00645 PF01297 Zinc-uptake complex component A periplasmic CH92_00660 PF11892 Domain of unknown function (DUF3412) CH92_00660 PF03641 Possible lysine decarboxylase CH92_00660 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH92_00665 PF01636 Phosphotransferase enzyme family CH92_00675 PF01612 3'-5' exonuclease CH92_00675 PF00476 DNA polymerase family A CH92_00675 PF01367 5'-3' exonuclease, C-terminal SAM fold CH92_00675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH92_00710 PF02525 Flavodoxin-like fold CH92_00715 PF02233 NAD(P) transhydrogenase beta subunit CH92_00720 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH92_00725 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH92_00725 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH92_00730 PF00437 Type II/IV secretion system protein CH92_00735 PF00482 Type II secretion system (T2SS), protein F CH92_00740 PF07963 Prokaryotic N-terminal methylation motif CH92_00740 PF08334 Type II secretion system (T2SS), protein G CH92_00745 PF12019 Type II transport protein GspH CH92_00745 PF07963 Prokaryotic N-terminal methylation motif CH92_00750 PF07963 Prokaryotic N-terminal methylation motif CH92_00750 PF02501 Type II secretion system (T2SS), protein I CH92_00755 PF07963 Prokaryotic N-terminal methylation motif CH92_00755 PF11612 Type II secretion system (T2SS), protein J CH92_00760 PF03934 Type II secretion system (T2SS), protein K CH92_00765 PF12693 GspL periplasmic domain CH92_00765 PF05134 Type II secretion system (T2SS), protein L CH92_00780 PF00271 Helicase conserved C-terminal domain CH92_00780 PF00270 DEAD/DEAH box helicase CH92_00780 PF17191 RecG wedge domain CH92_00785 PF03466 LysR substrate binding domain CH92_00785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_00795 PF00107 Zinc-binding dehydrogenase CH92_00795 PF13823 Alcohol dehydrogenase GroES-associated CH92_00795 PF08240 Alcohol dehydrogenase GroES-like domain CH92_00815 PF05175 Methyltransferase small domain CH92_00830 PF01738 Dienelactone hydrolase family CH92_00835 PF10282 Lactonase, 7-bladed beta-propeller CH92_00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_00845 PF13426 PAS domain CH92_00845 PF00072 Response regulator receiver domain CH92_00860 PF03795 YCII-related domain CH92_00865 PF08281 Sigma-70, region 4 CH92_00865 PF04542 Sigma-70 region 2 CH92_00870 PF02954 Bacterial regulatory protein, Fis family CH92_00870 PF00072 Response regulator receiver domain CH92_00870 PF00158 Sigma-54 interaction domain CH92_00880 PF00916 Sulfate permease family CH92_00880 PF01740 STAS domain CH92_00885 PF00582 Universal stress protein family CH92_00910 PF09107 Elongation factor SelB, winged helix CH92_00910 PF00009 Elongation factor Tu GTP binding domain CH92_00910 PF09106 Elongation factor SelB, winged helix CH92_00910 PF03144 Elongation factor Tu domain 2 CH92_00915 PF03841 L-seryl-tRNA selenium transferase CH92_00915 PF12390 Selenocysteine synthase N terminal CH92_00925 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_00930 PF13361 UvrD-like helicase C-terminal domain CH92_00930 PF00580 UvrD/REP helicase N-terminal domain CH92_00940 PF03707 Bacterial signalling protein N terminal repeat CH92_00940 PF00990 Diguanylate cyclase, GGDEF domain CH92_00940 PF00563 EAL domain CH92_00960 PF13840 ACT domain CH92_00960 PF00696 Amino acid kinase family CH92_00965 PF05721 Phytanoyl-CoA dioxygenase (PhyH) CH92_00970 PF06339 Ectoine synthase CH92_00985 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH92_00985 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH92_00990 PF01380 SIS domain CH92_00990 PF01418 Helix-turn-helix domain, rpiR family CH92_00990 PF02685 Glucokinase CH92_01000 PF02615 Malate/L-lactate dehydrogenase CH92_01005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_01015 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_01020 PF00701 Dihydrodipicolinate synthetase family CH92_01025 PF05544 Proline racemase CH92_01030 PF00005 ABC transporter CH92_01035 PF00528 Binding-protein-dependent transport system inner membrane component CH92_01040 PF00528 Binding-protein-dependent transport system inner membrane component CH92_01060 PF04324 BFD-like [2Fe-2S] binding domain CH92_01060 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_01070 PF01266 FAD dependent oxidoreductase CH92_01075 PF05544 Proline racemase CH92_01080 PF07729 FCD domain CH92_01080 PF00392 Bacterial regulatory proteins, gntR family CH92_01085 PF03466 LysR substrate binding domain CH92_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_01090 PF00289 Biotin carboxylase, N-terminal domain CH92_01090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH92_01090 PF02785 Biotin carboxylase C-terminal domain CH92_01095 PF02436 Conserved carboxylase domain CH92_01095 PF00682 HMGL-like CH92_01095 PF00364 Biotin-requiring enzyme CH92_01105 PF00583 Acetyltransferase (GNAT) family CH92_01110 PF04960 Glutaminase CH92_01115 PF00484 Carbonic anhydrase CH92_01135 PF00343 Carbohydrate phosphorylase CH92_01140 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH92_01165 PF00561 alpha/beta hydrolase fold CH92_01170 PF02580 D-Tyr-tRNA(Tyr) deacylase CH92_01175 PF03682 Uncharacterised protein family (UPF0158) CH92_01185 PF00902 Sec-independent protein translocase protein (TatC) CH92_01190 PF02416 mttA/Hcf106 family CH92_01195 PF02416 mttA/Hcf106 family CH92_01200 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH92_01205 PF01502 Phosphoribosyl-AMP cyclohydrolase CH92_01210 PF03109 ABC1 family CH92_01220 PF01209 ubiE/COQ5 methyltransferase family CH92_01235 PF00004 ATPase family associated with various cellular activities (AAA) CH92_01235 PF07724 AAA domain (Cdc48 subfamily) CH92_01240 PF00227 Proteasome subunit CH92_01245 PF00588 SpoU rRNA Methylase family CH92_01255 PF00158 Sigma-54 interaction domain CH92_01255 PF00072 Response regulator receiver domain CH92_01255 PF02954 Bacterial regulatory protein, Fis family CH92_01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_01260 PF00989 PAS fold CH92_01260 PF00512 His Kinase A (phospho-acceptor) domain CH92_01275 PF00120 Glutamine synthetase, catalytic domain CH92_01275 PF03951 Glutamine synthetase, beta-Grasp domain CH92_01280 PF02568 Thiamine biosynthesis protein (ThiI) CH92_01280 PF02926 THUMP domain CH92_01290 PF00196 Bacterial regulatory proteins, luxR family CH92_01290 PF00072 Response regulator receiver domain CH92_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_01295 PF00512 His Kinase A (phospho-acceptor) domain CH92_01295 PF01627 Hpt domain CH92_01295 PF00072 Response regulator receiver domain CH92_01305 PF03466 LysR substrate binding domain CH92_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_01325 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH92_01325 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH92_01330 PF03390 2-hydroxycarboxylate transporter family CH92_01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_01335 PF00989 PAS fold CH92_01335 PF17203 Single cache domain 3 CH92_01335 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH92_01340 PF00072 Response regulator receiver domain CH92_01345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_01345 PF00672 HAMP domain CH92_01345 PF02743 Cache domain CH92_01365 PF00756 Putative esterase CH92_01375 PF07660 Secretin and TonB N terminus short domain CH92_01375 PF07715 TonB-dependent Receptor Plug Domain CH92_01375 PF00593 TonB dependent receptor CH92_01380 PF12833 Helix-turn-helix domain CH92_01385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_01385 PF03466 LysR substrate binding domain CH92_01390 PF03401 Tripartite tricarboxylate transporter family receptor CH92_01400 PF01970 Tripartite tricarboxylate transporter TctA family CH92_01420 PF00360 Phytochrome region CH92_01420 PF00990 Diguanylate cyclase, GGDEF domain CH92_01420 PF00563 EAL domain CH92_01420 PF01590 GAF domain CH92_01435 PF00194 Eukaryotic-type carbonic anhydrase CH92_01440 PF07995 Glucose / Sorbosone dehydrogenase CH92_01445 PF00034 Cytochrome c CH92_01450 PF07308 Protein of unknown function (DUF1456) CH92_01465 PF00158 Sigma-54 interaction domain CH92_01465 PF02954 Bacterial regulatory protein, Fis family CH92_01465 PF00072 Response regulator receiver domain CH92_01470 PF00563 EAL domain CH92_01470 PF00990 Diguanylate cyclase, GGDEF domain CH92_01475 PF13416 Bacterial extracellular solute-binding protein CH92_01520 PF08543 Phosphomethylpyrimidine kinase CH92_01525 PF03636 Glycosyl hydrolase family 65, N-terminal domain CH92_01525 PF02358 Trehalose-phosphatase CH92_01525 PF03632 Glycosyl hydrolase family 65 central catalytic domain CH92_01525 PF03633 Glycosyl hydrolase family 65, C-terminal domain CH92_01540 PF03334 Na+/H+ antiporter subunit CH92_01555 PF00361 Proton-conducting membrane transporter CH92_01560 PF00361 Proton-conducting membrane transporter CH92_01565 PF00361 Proton-conducting membrane transporter CH92_01565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH92_01565 PF13244 Domain of unknown function (DUF4040) CH92_01570 PF00672 HAMP domain CH92_01570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_01570 PF17200 Single Cache domain 2 CH92_01585 PF00106 short chain dehydrogenase CH92_01620 PF00196 Bacterial regulatory proteins, luxR family CH92_01620 PF00072 Response regulator receiver domain CH92_01640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_01640 PF01842 ACT domain CH92_01640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_01645 PF02913 FAD linked oxidases, C-terminal domain CH92_01645 PF01565 FAD binding domain CH92_01650 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH92_01655 PF06977 SdiA-regulated CH92_01660 PF06977 SdiA-regulated CH92_01665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH92_01670 PF00291 Pyridoxal-phosphate dependent enzyme CH92_01670 PF00585 C-terminal regulatory domain of Threonine dehydratase CH92_01690 PF00293 NUDIX domain CH92_01695 PF02896 PEP-utilising enzyme, TIM barrel domain CH92_01695 PF01590 GAF domain CH92_01695 PF05524 PEP-utilising enzyme, N-terminal CH92_01695 PF00391 PEP-utilising enzyme, mobile domain CH92_01705 PF01925 Sulfite exporter TauE/SafE CH92_01710 PF01790 Prolipoprotein diacylglyceryl transferase CH92_01715 PF00303 Thymidylate synthase CH92_01720 PF13614 AAA domain CH92_01730 PF02653 Branched-chain amino acid transport system / permease component CH92_01735 PF00005 ABC transporter CH92_01740 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_01740 PF00005 ABC transporter CH92_01750 PF00072 Response regulator receiver domain CH92_01755 PF08525 Opacity-associated protein A N-terminal motif CH92_01755 PF01551 Peptidase family M23 CH92_01755 PF01476 LysM domain CH92_01765 PF01595 Cyclin M transmembrane N-terminal domain CH92_01765 PF00571 CBS domain CH92_01765 PF03471 Transporter associated domain CH92_01770 PF00512 His Kinase A (phospho-acceptor) domain CH92_01770 PF00989 PAS fold CH92_01770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_01770 PF11808 Phosphate regulon sensor protein PhoR CH92_01775 PF00486 Transcriptional regulatory protein, C terminal CH92_01775 PF00072 Response regulator receiver domain CH92_01780 PF01040 UbiA prenyltransferase family CH92_01785 PF04345 Chorismate lyase CH92_01790 PF00392 Bacterial regulatory proteins, gntR family CH92_01790 PF07729 FCD domain CH92_01795 PF02913 FAD linked oxidases, C-terminal domain CH92_01795 PF01565 FAD binding domain CH92_01800 PF01565 FAD binding domain CH92_01805 PF13183 4Fe-4S dicluster domain CH92_01805 PF02754 Cysteine-rich domain CH92_01810 PF03928 Haem-degrading CH92_01815 PF01274 Malate synthase CH92_01820 PF02652 L-lactate permease CH92_01825 PF00301 Rubredoxin CH92_01830 PF18113 Rubredoxin binding C-terminal domain CH92_01830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_01835 PF00216 Bacterial DNA-binding protein CH92_01845 PF13533 Biotin-lipoyl like CH92_01850 PF00873 AcrB/AcrD/AcrF family CH92_01855 PF00486 Transcriptional regulatory protein, C terminal CH92_01855 PF00072 Response regulator receiver domain CH92_01860 PF00512 His Kinase A (phospho-acceptor) domain CH92_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_01860 PF00672 HAMP domain CH92_01865 PF01738 Dienelactone hydrolase family CH92_01870 PF03466 LysR substrate binding domain CH92_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_01875 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_01875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_01875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_01880 PF02515 CoA-transferase family III CH92_01885 PF04011 LemA family CH92_01900 PF17862 AAA+ lid domain CH92_01900 PF01434 Peptidase family M41 CH92_01900 PF00004 ATPase family associated with various cellular activities (AAA) CH92_01910 PF10609 NUBPL iron-transfer P-loop NTPase CH92_01915 PF00970 Oxidoreductase FAD-binding domain CH92_01915 PF00175 Oxidoreductase NAD-binding domain CH92_01920 PF03601 Conserved hypothetical protein 698 CH92_01935 PF11953 Domain of unknown function (DUF3470) CH92_01935 PF00037 4Fe-4S binding domain CH92_01950 PF00890 FAD binding domain CH92_01950 PF02910 Fumarate reductase flavoprotein C-term CH92_01960 PF00005 ABC transporter CH92_01965 PF00528 Binding-protein-dependent transport system inner membrane component CH92_01980 PF01966 HD domain CH92_01990 PF00691 OmpA family CH92_01990 PF13488 Glycine zipper CH92_01995 PF00672 HAMP domain CH92_01995 PF00211 Adenylate and Guanylate cyclase catalytic domain CH92_01995 PF02743 Cache domain CH92_02000 PF01042 Endoribonuclease L-PSP CH92_02005 PF13291 ACT domain CH92_02005 PF04607 Region found in RelA / SpoT proteins CH92_02005 PF02824 TGS domain CH92_02010 PF01192 RNA polymerase Rpb6 CH92_02015 PF00625 Guanylate kinase CH92_02020 PF03755 YicC-like family, N-terminal region CH92_02020 PF08340 Domain of unknown function (DUF1732) CH92_02025 PF03725 3' exoribonuclease family, domain 2 CH92_02025 PF01138 3' exoribonuclease family, domain 1 CH92_02035 PF03372 Endonuclease/Exonuclease/phosphatase family CH92_02040 PF00156 Phosphoribosyl transferase domain CH92_02050 PF00696 Amino acid kinase family CH92_02055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH92_02055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH92_02055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH92_02055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH92_02060 PF00692 dUTPase CH92_02065 PF02441 Flavoprotein CH92_02065 PF04127 DNA / pantothenate metabolism flavoprotein CH92_02070 PF04002 RadC-like JAB domain CH92_02080 PF03061 Thioesterase superfamily CH92_02085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_02085 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CH92_02085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_02090 PF12729 Four helix bundle sensory module for signal transduction CH92_02090 PF00672 HAMP domain CH92_02090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_02105 PF13091 PLD-like domain CH92_02110 PF01266 FAD dependent oxidoreductase CH92_02115 PF01037 Lrp/AsnC ligand binding domain CH92_02120 PF01266 FAD dependent oxidoreductase CH92_02135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_02145 PF00156 Phosphoribosyl transferase domain CH92_02160 PF00128 Alpha amylase, catalytic domain CH92_02160 PF16657 Maltogenic Amylase, C-terminal domain CH92_02165 PF00128 Alpha amylase, catalytic domain CH92_02170 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_02170 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH92_02180 PF00465 Iron-containing alcohol dehydrogenase CH92_02185 PF00171 Aldehyde dehydrogenase family CH92_02190 PF01614 Bacterial transcriptional regulator CH92_02190 PF09339 IclR helix-turn-helix domain CH92_02195 PF00580 UvrD/REP helicase N-terminal domain CH92_02195 PF13361 UvrD-like helicase C-terminal domain CH92_02200 PF00990 Diguanylate cyclase, GGDEF domain CH92_02200 PF00563 EAL domain CH92_02200 PF03707 Bacterial signalling protein N terminal repeat CH92_02205 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_02210 PF01078 Magnesium chelatase, subunit ChlI CH92_02210 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH92_02215 PF04380 Membrane fusogenic activity CH92_02220 PF00543 Nitrogen regulatory protein P-II CH92_02225 PF00909 Ammonium Transporter Family CH92_02230 PF00909 Ammonium Transporter Family CH92_02235 PF01894 Uncharacterised protein family UPF0047 CH92_02250 PF02899 Phage integrase, N-terminal SAM-like domain CH92_02250 PF00589 Phage integrase family CH92_02260 PF01678 Diaminopimelate epimerase CH92_02265 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH92_02265 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH92_02270 PF13627 Prokaryotic lipoprotein-attachment site CH92_02275 PF01491 Frataxin-like domain CH92_02280 PF14760 Rnk N-terminus CH92_02280 PF01272 Transcription elongation factor, GreA/GreB, C-term CH92_02285 PF01295 Adenylate cyclase, class-I CH92_02285 PF12633 Adenylate cyclase NT domain CH92_02300 PF01544 CorA-like Mg2+ transporter protein CH92_02320 PF14698 Argininosuccinate lyase C-terminal CH92_02320 PF00206 Lyase CH92_02325 PF02743 Cache domain CH92_02325 PF00672 HAMP domain CH92_02325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_02335 PF00072 Response regulator receiver domain CH92_02335 PF04397 LytTr DNA-binding domain CH92_02340 PF03900 Porphobilinogen deaminase, C-terminal domain CH92_02340 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH92_02345 PF02602 Uroporphyrinogen-III synthase HemD CH92_02360 PF02600 Disulfide bond formation protein DsbB CH92_02365 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH92_02380 PF12848 ABC transporter CH92_02380 PF00005 ABC transporter CH92_02390 PF03741 Integral membrane protein TerC family CH92_02395 PF01810 LysE type translocator CH92_02400 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH92_02405 PF03061 Thioesterase superfamily CH92_02415 PF00490 Delta-aminolevulinic acid dehydratase CH92_02420 PF02503 Polyphosphate kinase middle domain CH92_02420 PF13089 Polyphosphate kinase N-terminal domain CH92_02420 PF17941 Polyphosphate kinase C-terminal domain 1 CH92_02420 PF13090 Polyphosphate kinase C-terminal domain 2 CH92_02425 PF02541 Ppx/GppA phosphatase family CH92_02430 PF00085 Thioredoxin CH92_02435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH92_02435 PF07497 Rho termination factor, RNA-binding domain CH92_02435 PF07498 Rho termination factor, N-terminal domain CH92_02440 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH92_02445 PF00175 Oxidoreductase NAD-binding domain CH92_02455 PF05746 DALR anticodon binding domain CH92_02455 PF00750 tRNA synthetases class I (R) CH92_02455 PF03485 Arginyl tRNA synthetase N terminal domain CH92_02460 PF00271 Helicase conserved C-terminal domain CH92_02460 PF17764 3′ DNA-binding domain (3′BD) CH92_02460 PF18074 Primosomal protein N C-terminal domain CH92_02460 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH92_02460 PF00270 DEAD/DEAH box helicase CH92_02465 PF01197 Ribosomal protein L31 CH92_02475 PF03949 Malic enzyme, NAD binding domain CH92_02475 PF00390 Malic enzyme, N-terminal domain CH92_02480 PF17092 Penicillin-binding protein OB-like domain CH92_02480 PF00905 Penicillin binding protein transpeptidase domain CH92_02480 PF00912 Transglycosylase CH92_02505 PF00263 Bacterial type II and III secretion system protein CH92_02505 PF03958 Bacterial type II/III secretion system short domain CH92_02505 PF07660 Secretin and TonB N terminus short domain CH92_02505 PF11741 AMIN domain CH92_02510 PF01202 Shikimate kinase CH92_02515 PF01761 3-dehydroquinate synthase CH92_02525 PF01645 Conserved region in glutamate synthase CH92_02525 PF04898 Glutamate synthase central domain CH92_02525 PF00310 Glutamine amidotransferases class-II CH92_02525 PF01493 GXGXG motif CH92_02530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH92_02530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_02535 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH92_02550 PF00109 Beta-ketoacyl synthase, N-terminal domain CH92_02550 PF02801 Beta-ketoacyl synthase, C-terminal domain CH92_02565 PF00109 Beta-ketoacyl synthase, N-terminal domain CH92_02565 PF02801 Beta-ketoacyl synthase, C-terminal domain CH92_02595 PF00221 Aromatic amino acid lyase CH92_02610 PF00501 AMP-binding enzyme CH92_02610 PF13193 AMP-binding enzyme C-terminal domain CH92_02620 PF00550 Phosphopantetheine attachment site CH92_02625 PF00550 Phosphopantetheine attachment site CH92_02640 PF00085 Thioredoxin CH92_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_02645 PF03466 LysR substrate binding domain CH92_02650 PF07690 Major Facilitator Superfamily CH92_02675 PF08378 Nuclease-related domain CH92_02715 PF04545 Sigma-70, region 4 CH92_02715 PF00140 Sigma-70 factor, region 1.2 CH92_02715 PF03979 Sigma-70 factor, region 1.1 CH92_02715 PF04542 Sigma-70 region 2 CH92_02715 PF04546 Sigma-70, non-essential region CH92_02715 PF04539 Sigma-70 region 3 CH92_02720 PF13662 Toprim domain CH92_02720 PF08278 DNA primase DnaG DnaB-binding CH92_02720 PF01807 CHC2 zinc finger CH92_02720 PF10410 DnaB-helicase binding domain of primase CH92_02720 PF08275 DNA primase catalytic core, N-terminal domain CH92_02725 PF01165 Ribosomal protein S21 CH92_02730 PF00814 Glycoprotease family CH92_02735 PF02660 Glycerol-3-phosphate acyltransferase CH92_02750 PF12627 Probable RNA and SrmB- binding site of polymerase A CH92_02750 PF01966 HD domain CH92_02750 PF01743 Poly A polymerase head domain CH92_02755 PF04293 SpoVR like protein CH92_02760 PF04285 Protein of unknown function (DUF444) CH92_02765 PF08298 PrkA AAA domain CH92_02765 PF06798 PrkA serine protein kinase C-terminal domain CH92_02770 PF00581 Rhodanese-like domain CH92_02775 PF00149 Calcineurin-like phosphoesterase CH92_02780 PF04379 ApaG domain CH92_02785 PF00398 Ribosomal RNA adenine dimethylase CH92_02790 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH92_02795 PF00639 PPIC-type PPIASE domain CH92_02795 PF09312 SurA N-terminal domain CH92_02800 PF03968 OstA-like protein CH92_02800 PF04453 LPS transport system D CH92_02805 PF01636 Phosphotransferase enzyme family CH92_02810 PF00483 Nucleotidyl transferase CH92_02815 PF00226 DnaJ domain CH92_02815 PF05099 Tellurite resistance protein TerB CH92_02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_02825 PF07730 Histidine kinase CH92_02825 PF05231 MASE1 CH92_02830 PF00072 Response regulator receiver domain CH92_02830 PF00196 Bacterial regulatory proteins, luxR family CH92_02835 PF08402 TOBE domain CH92_02835 PF00005 ABC transporter CH92_02845 PF00528 Binding-protein-dependent transport system inner membrane component CH92_02850 PF00528 Binding-protein-dependent transport system inner membrane component CH92_02855 PF00202 Aminotransferase class-III CH92_02860 PF00834 Ribulose-phosphate 3 epimerase family CH92_02865 PF13419 Haloacid dehalogenase-like hydrolase CH92_02870 PF00425 chorismate binding enzyme CH92_02870 PF04715 Anthranilate synthase component I, N terminal region CH92_02875 PF00117 Glutamine amidotransferase class-I CH92_02880 PF00591 Glycosyl transferase family, a/b domain CH92_02880 PF02885 Glycosyl transferase family, helical bundle domain CH92_02885 PF00218 Indole-3-glycerol phosphate synthase CH92_02890 PF00027 Cyclic nucleotide-binding domain CH92_02890 PF13545 Crp-like helix-turn-helix domain CH92_02895 PF02566 OsmC-like protein CH92_02900 PF02675 S-adenosylmethionine decarboxylase CH92_02905 PF03232 Ubiquinone biosynthesis protein COQ7 CH92_02910 PF01230 HIT domain CH92_02915 PF01434 Peptidase family M41 CH92_02915 PF06480 FtsH Extracellular CH92_02915 PF17862 AAA+ lid domain CH92_02915 PF00004 ATPase family associated with various cellular activities (AAA) CH92_02925 PF03060 Nitronate monooxygenase CH92_02935 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH92_02935 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH92_02940 PF01521 Iron-sulphur cluster biosynthesis CH92_02945 PF03702 Anhydro-N-acetylmuramic acid kinase CH92_02950 PF01551 Peptidase family M23 CH92_02950 PF04225 Opacity-associated protein A LysM-like domain CH92_02955 PF00579 tRNA synthetases class I (W and Y) CH92_02955 PF01479 S4 domain CH92_03010 PF16671 Actin cross-linking domain CH92_03010 PF04717 Type VI secretion system, phage-baseplate injector CH92_03025 PF16671 Actin cross-linking domain CH92_03025 PF04717 Type VI secretion system, phage-baseplate injector CH92_03030 PF03793 PASTA domain CH92_03030 PF00069 Protein kinase domain CH92_03085 PF04717 Type VI secretion system, phage-baseplate injector CH92_03085 PF16671 Actin cross-linking domain CH92_03090 PF00158 Sigma-54 interaction domain CH92_03090 PF01590 GAF domain CH92_03095 PF00004 ATPase family associated with various cellular activities (AAA) CH92_03095 PF07724 AAA domain (Cdc48 subfamily) CH92_03095 PF17871 AAA lid domain CH92_03095 PF10431 C-terminal, D2-small domain, of ClpB protein CH92_03165 PF08279 HTH domain CH92_03165 PF03099 Biotin/lipoate A/B protein ligase family CH92_03165 PF02237 Biotin protein ligase C terminal domain CH92_03170 PF03309 Type III pantothenate kinase CH92_03195 PF03143 Elongation factor Tu C-terminal domain CH92_03195 PF03144 Elongation factor Tu domain 2 CH92_03195 PF00009 Elongation factor Tu GTP binding domain CH92_03205 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH92_03210 PF00467 KOW motif CH92_03210 PF02357 Transcription termination factor nusG CH92_03215 PF03946 Ribosomal protein L11, N-terminal domain CH92_03215 PF00298 Ribosomal protein L11, RNA binding domain CH92_03220 PF00687 Ribosomal protein L1p/L10e family CH92_03225 PF00466 Ribosomal protein L10 CH92_03230 PF00542 Ribosomal protein L7/L12 C-terminal domain CH92_03230 PF16320 Ribosomal protein L7/L12 dimerisation domain CH92_03235 PF10385 RNA polymerase beta subunit external 1 domain CH92_03235 PF04560 RNA polymerase Rpb2, domain 7 CH92_03235 PF04565 RNA polymerase Rpb2, domain 3 CH92_03235 PF04561 RNA polymerase Rpb2, domain 2 CH92_03235 PF04563 RNA polymerase beta subunit CH92_03235 PF00562 RNA polymerase Rpb2, domain 6 CH92_03240 PF05000 RNA polymerase Rpb1, domain 4 CH92_03240 PF04983 RNA polymerase Rpb1, domain 3 CH92_03240 PF04997 RNA polymerase Rpb1, domain 1 CH92_03240 PF00623 RNA polymerase Rpb1, domain 2 CH92_03240 PF04998 RNA polymerase Rpb1, domain 5 CH92_03245 PF00164 Ribosomal protein S12/S23 CH92_03250 PF00177 Ribosomal protein S7p/S5e CH92_03255 PF00009 Elongation factor Tu GTP binding domain CH92_03255 PF00679 Elongation factor G C-terminus CH92_03255 PF03144 Elongation factor Tu domain 2 CH92_03255 PF14492 Elongation Factor G, domain II CH92_03255 PF03764 Elongation factor G, domain IV CH92_03260 PF03143 Elongation factor Tu C-terminal domain CH92_03260 PF03144 Elongation factor Tu domain 2 CH92_03260 PF00009 Elongation factor Tu GTP binding domain CH92_03265 PF00338 Ribosomal protein S10p/S20e CH92_03270 PF00297 Ribosomal protein L3 CH92_03275 PF00573 Ribosomal protein L4/L1 family CH92_03280 PF00276 Ribosomal protein L23 CH92_03285 PF03947 Ribosomal Proteins L2, C-terminal domain CH92_03285 PF00181 Ribosomal Proteins L2, RNA binding domain CH92_03290 PF00203 Ribosomal protein S19 CH92_03295 PF00237 Ribosomal protein L22p/L17e CH92_03300 PF00189 Ribosomal protein S3, C-terminal domain CH92_03300 PF07650 KH domain CH92_03305 PF00252 Ribosomal protein L16p/L10e CH92_03310 PF00831 Ribosomal L29 protein CH92_03315 PF00366 Ribosomal protein S17 CH92_03320 PF00238 Ribosomal protein L14p/L23e CH92_03325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH92_03325 PF00467 KOW motif CH92_03330 PF00673 ribosomal L5P family C-terminus CH92_03330 PF00281 Ribosomal protein L5 CH92_03335 PF00253 Ribosomal protein S14p/S29e CH92_03340 PF00410 Ribosomal protein S8 CH92_03345 PF00347 Ribosomal protein L6 CH92_03350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH92_03355 PF00333 Ribosomal protein S5, N-terminal domain CH92_03355 PF03719 Ribosomal protein S5, C-terminal domain CH92_03360 PF00327 Ribosomal protein L30p/L7e CH92_03365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH92_03370 PF00344 SecY translocase CH92_03375 PF00444 Ribosomal protein L36 CH92_03380 PF00416 Ribosomal protein S13/S18 CH92_03385 PF00411 Ribosomal protein S11 CH92_03390 PF01479 S4 domain CH92_03390 PF00163 Ribosomal protein S4/S9 N-terminal domain CH92_03395 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH92_03395 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH92_03395 PF01000 RNA polymerase Rpb3/RpoA insert domain CH92_03400 PF01196 Ribosomal protein L17 CH92_03405 PF06628 Catalase-related immune-responsive CH92_03405 PF00199 Catalase CH92_03410 PF17760 UvrA interaction domain CH92_03410 PF17755 UvrA DNA-binding domain CH92_03415 PF07690 Major Facilitator Superfamily CH92_03420 PF00436 Single-strand binding protein family CH92_03430 PF16363 GDP-mannose 4,6 dehydratase CH92_03435 PF03922 OmpW family CH92_03445 PF01618 MotA/TolQ/ExbB proton channel family CH92_03450 PF01618 MotA/TolQ/ExbB proton channel family CH92_03455 PF02472 Biopolymer transport protein ExbD/TolR CH92_03460 PF03544 Gram-negative bacterial TonB protein C-terminal CH92_03480 PF12704 MacB-like periplasmic core domain CH92_03480 PF02687 FtsX-like permease family CH92_03480 PF00005 ABC transporter CH92_03495 PF04228 Putative neutral zinc metallopeptidase CH92_03505 PF00486 Transcriptional regulatory protein, C terminal CH92_03505 PF00072 Response regulator receiver domain CH92_03525 PF01219 Prokaryotic diacylglycerol kinase CH92_03535 PF05958 tRNA (Uracil-5-)-methyltransferase CH92_03540 PF00860 Permease family CH92_03555 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_03555 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH92_03555 PF01799 [2Fe-2S] binding domain CH92_03560 PF00941 FAD binding domain in molybdopterin dehydrogenase CH92_03560 PF03450 CO dehydrogenase flavoprotein C-terminal domain CH92_03565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CH92_03565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_03580 PF13411 MerR HTH family regulatory protein CH92_03585 PF05175 Methyltransferase small domain CH92_03590 PF00970 Oxidoreductase FAD-binding domain CH92_03590 PF00175 Oxidoreductase NAD-binding domain CH92_03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_03595 PF03466 LysR substrate binding domain CH92_03600 PF12411 Choline sulfatase enzyme C terminal CH92_03600 PF00884 Sulfatase CH92_03610 PF05199 GMC oxidoreductase CH92_03610 PF00732 GMC oxidoreductase CH92_03615 PF00171 Aldehyde dehydrogenase family CH92_03620 PF00440 Bacterial regulatory proteins, tetR family CH92_03620 PF13977 BetI-type transcriptional repressor, C-terminal CH92_03625 PF03573 outer membrane porin, OprD family CH92_03630 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH92_03635 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH92_03640 PF00528 Binding-protein-dependent transport system inner membrane component CH92_03645 PF00005 ABC transporter CH92_03645 PF00571 CBS domain CH92_03655 PF03315 Serine dehydratase beta chain CH92_03655 PF03313 Serine dehydratase alpha chain CH92_03660 PF01965 DJ-1/PfpI family CH92_03660 PF12833 Helix-turn-helix domain CH92_03680 PF01012 Electron transfer flavoprotein domain CH92_03680 PF00766 Electron transfer flavoprotein FAD-binding domain CH92_03685 PF02754 Cysteine-rich domain CH92_03685 PF13183 4Fe-4S dicluster domain CH92_03690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_03700 PF01244 Membrane dipeptidase (Peptidase family M19) CH92_03705 PF01965 DJ-1/PfpI family CH92_03705 PF12833 Helix-turn-helix domain CH92_03715 PF05853 beta-keto acid cleavage enzyme CH92_03720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_03720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_03730 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH92_03730 PF08240 Alcohol dehydrogenase GroES-like domain CH92_03735 PF00551 Formyl transferase CH92_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_03745 PF17806 Sarcosine oxidase A3 domain CH92_03745 PF01571 Aminomethyltransferase folate-binding domain CH92_03745 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH92_03755 PF01266 FAD dependent oxidoreductase CH92_03760 PF00464 Serine hydroxymethyltransferase CH92_03765 PF00970 Oxidoreductase FAD-binding domain CH92_03765 PF00042 Globin CH92_03765 PF00175 Oxidoreductase NAD-binding domain CH92_03775 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CH92_03775 PF00355 Rieske [2Fe-2S] domain CH92_03785 PF05230 MASE2 domain CH92_03785 PF00990 Diguanylate cyclase, GGDEF domain CH92_03790 PF09345 Domain of unknown function (DUF1987) CH92_03805 PF12848 ABC transporter CH92_03805 PF00005 ABC transporter CH92_03810 PF03707 Bacterial signalling protein N terminal repeat CH92_03810 PF00563 EAL domain CH92_03810 PF00990 Diguanylate cyclase, GGDEF domain CH92_03815 PF00464 Serine hydroxymethyltransferase CH92_03820 PF07730 Histidine kinase CH92_03820 PF17200 Single Cache domain 2 CH92_03825 PF00072 Response regulator receiver domain CH92_03825 PF00196 Bacterial regulatory proteins, luxR family CH92_03835 PF07238 PilZ domain CH92_03840 PF18073 Rubredoxin metal binding domain CH92_03855 PF01741 Large-conductance mechanosensitive channel, MscL CH92_03865 PF05362 Lon protease (S16) C-terminal proteolytic domain CH92_03865 PF13654 AAA domain CH92_03875 PF03350 Uncharacterized protein family, UPF0114 CH92_03880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH92_03880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_03890 PF00348 Polyprenyl synthetase CH92_03895 PF00829 Ribosomal prokaryotic L21 protein CH92_03900 PF01016 Ribosomal L27 protein CH92_03905 PF01926 50S ribosome-binding GTPase CH92_03905 PF01018 GTP1/OBG CH92_03910 PF00696 Amino acid kinase family CH92_03910 PF01472 PUA domain CH92_03915 PF05981 CreA protein CH92_03920 PF01649 Ribosomal protein S20 CH92_03925 PF03023 Lipid II flippase MurJ CH92_03930 PF06574 FAD synthetase CH92_03930 PF01687 Riboflavin kinase CH92_03935 PF08264 Anticodon-binding domain of tRNA CH92_03935 PF06827 Zinc finger found in FPG and IleRS CH92_03935 PF00133 tRNA synthetases class I (I, L, M and V) CH92_03940 PF01252 Signal peptidase (SPase) II CH92_03945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_03950 PF02401 LytB protein CH92_03955 PF07963 Prokaryotic N-terminal methylation motif CH92_03955 PF00114 Pilin (bacterial filament) CH92_03960 PF05567 Neisseria PilC beta-propeller domain CH92_03980 PF12019 Type II transport protein GspH CH92_03980 PF07963 Prokaryotic N-terminal methylation motif CH92_03990 PF01266 FAD dependent oxidoreductase CH92_03995 PF01253 Translation initiation factor SUI1 CH92_04000 PF17944 Arginine decarboxylase C-terminal helical extension CH92_04000 PF17810 Arginine decarboxylase helical bundle domain CH92_04000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH92_04005 PF06827 Zinc finger found in FPG and IleRS CH92_04005 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH92_04005 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH92_04020 PF13404 AsnC-type helix-turn-helix domain CH92_04020 PF01037 Lrp/AsnC ligand binding domain CH92_04030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH92_04030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH92_04035 PF00209 Sodium:neurotransmitter symporter family CH92_04040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_04045 PF02798 Glutathione S-transferase, N-terminal domain CH92_04045 PF14497 Glutathione S-transferase, C-terminal domain CH92_04050 PF00209 Sodium:neurotransmitter symporter family CH92_04055 PF02743 Cache domain CH92_04055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_04055 PF00672 HAMP domain CH92_04060 PF01965 DJ-1/PfpI family CH92_04075 PF00155 Aminotransferase class I and II CH92_04080 PF01329 Pterin 4 alpha carbinolamine dehydratase CH92_04085 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CH92_04090 PF00158 Sigma-54 interaction domain CH92_04090 PF18024 Helix-turn-helix domain CH92_04095 PF03705 CheR methyltransferase, all-alpha domain CH92_04095 PF08448 PAS fold CH92_04095 PF01739 CheR methyltransferase, SAM binding domain CH92_04095 PF01339 CheB methylesterase CH92_04100 PF03315 Serine dehydratase beta chain CH92_04100 PF03313 Serine dehydratase alpha chain CH92_04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_04110 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_04115 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_04120 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_04135 PF04343 Protein of unknown function, DUF488 CH92_04150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_04150 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_04150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_04160 PF02416 mttA/Hcf106 family CH92_04175 PF00005 ABC transporter CH92_04175 PF00571 CBS domain CH92_04190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_04195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_04200 PF02954 Bacterial regulatory protein, Fis family CH92_04200 PF00158 Sigma-54 interaction domain CH92_04225 PF10634 Fe2+ transport protein CH92_04230 PF07690 Major Facilitator Superfamily CH92_04245 PF00501 AMP-binding enzyme CH92_04245 PF13193 AMP-binding enzyme C-terminal domain CH92_04250 PF12833 Helix-turn-helix domain CH92_04280 PF01979 Amidohydrolase family CH92_04295 PF07044 Protein of unknown function (DUF1329) CH92_04300 PF00884 Sulfatase CH92_04310 PF03466 LysR substrate binding domain CH92_04310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_04325 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH92_04330 PF01494 FAD binding domain CH92_04335 PF03928 Haem-degrading CH92_04345 PF00175 Oxidoreductase NAD-binding domain CH92_04345 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_04350 PF00355 Rieske [2Fe-2S] domain CH92_04355 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH92_04355 PF08240 Alcohol dehydrogenase GroES-like domain CH92_04360 PF12729 Four helix bundle sensory module for signal transduction CH92_04360 PF00672 HAMP domain CH92_04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_04365 PF07690 Major Facilitator Superfamily CH92_04375 PF00355 Rieske [2Fe-2S] domain CH92_04380 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_04380 PF00175 Oxidoreductase NAD-binding domain CH92_04385 PF05544 Proline racemase CH92_04390 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH92_04395 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_04405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_04410 PF00701 Dihydrodipicolinate synthetase family CH92_04415 PF00171 Aldehyde dehydrogenase family CH92_04420 PF00171 Aldehyde dehydrogenase family CH92_04425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH92_04425 PF00205 Thiamine pyrophosphate enzyme, central domain CH92_04425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH92_04430 PF00083 Sugar (and other) transporter CH92_04435 PF03807 NADP oxidoreductase coenzyme F420-dependent CH92_04435 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH92_04450 PF01042 Endoribonuclease L-PSP CH92_04460 PF01965 DJ-1/PfpI family CH92_04465 PF01266 FAD dependent oxidoreductase CH92_04470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_04470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_04475 PF00171 Aldehyde dehydrogenase family CH92_04480 PF13183 4Fe-4S dicluster domain CH92_04480 PF02913 FAD linked oxidases, C-terminal domain CH92_04480 PF01565 FAD binding domain CH92_04485 PF03466 LysR substrate binding domain CH92_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_04490 PF00144 Beta-lactamase CH92_04500 PF07044 Protein of unknown function (DUF1329) CH92_04505 PF14863 Alkyl sulfatase dimerisation CH92_04505 PF14864 Alkyl sulfatase C-terminal CH92_04505 PF00753 Metallo-beta-lactamase superfamily CH92_04515 PF07690 Major Facilitator Superfamily CH92_04520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_04520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_04520 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_04525 PF13193 AMP-binding enzyme C-terminal domain CH92_04525 PF00501 AMP-binding enzyme CH92_04530 PF01292 Prokaryotic cytochrome b561 CH92_04545 PF01070 FMN-dependent dehydrogenase CH92_04550 PF02652 L-lactate permease CH92_04555 PF00392 Bacterial regulatory proteins, gntR family CH92_04555 PF07729 FCD domain CH92_04560 PF01668 SmpB protein CH92_04565 PF03364 Polyketide cyclase / dehydrase and lipid transport CH92_04570 PF03658 RnfH family Ubiquitin CH92_04575 PF04355 SmpA / OmlA family CH92_04580 PF01475 Ferric uptake regulator family CH92_04585 PF02463 RecF/RecN/SMC N terminal domain CH92_04590 PF01025 GrpE CH92_04595 PF00012 Hsp70 protein CH92_04600 PF01556 DnaJ C terminal domain CH92_04600 PF00684 DnaJ central domain CH92_04600 PF00226 DnaJ domain CH92_04605 PF01113 Dihydrodipicolinate reductase, N-terminus CH92_04605 PF05173 Dihydrodipicolinate reductase, C-terminus CH92_04610 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH92_04610 PF00117 Glutamine amidotransferase class-I CH92_04615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH92_04615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH92_04615 PF02142 MGS-like domain CH92_04620 PF01272 Transcription elongation factor, GreA/GreB, C-term CH92_04620 PF03449 Transcription elongation factor, N-terminal CH92_04630 PF01985 CRS1 / YhbY (CRM) domain CH92_04635 PF01728 FtsJ-like methyltransferase CH92_04640 PF01434 Peptidase family M41 CH92_04640 PF17862 AAA+ lid domain CH92_04640 PF00004 ATPase family associated with various cellular activities (AAA) CH92_04640 PF06480 FtsH Extracellular CH92_04645 PF00809 Pterin binding enzyme CH92_04650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH92_04650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH92_04650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH92_04650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH92_04655 PF00121 Triosephosphate isomerase CH92_04660 PF03840 Preprotein translocase SecG subunit CH92_04675 PF17384 RimP C-terminal SH3 domain CH92_04675 PF02576 RimP N-terminal domain CH92_04680 PF00575 S1 RNA binding domain CH92_04680 PF08529 NusA N-terminal domain CH92_04680 PF13184 NusA-like KH domain CH92_04685 PF08364 Bacterial translation initiation factor IF-2 associated region CH92_04685 PF04760 Translation initiation factor IF-2, N-terminal region CH92_04685 PF11987 Translation-initiation factor 2 CH92_04685 PF00009 Elongation factor Tu GTP binding domain CH92_04690 PF02033 Ribosome-binding factor A CH92_04695 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH92_04695 PF09157 Pseudouridine synthase II TruB, C-terminal CH92_04695 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH92_04700 PF00312 Ribosomal protein S15 CH92_04705 PF00575 S1 RNA binding domain CH92_04705 PF00013 KH domain CH92_04705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH92_04705 PF03725 3' exoribonuclease family, domain 2 CH92_04705 PF01138 3' exoribonuclease family, domain 1 CH92_04710 PF04972 BON domain CH92_04740 PF00342 Phosphoglucose isomerase CH92_04745 PF02261 Aspartate decarboxylase CH92_04750 PF02569 Pantoate-beta-alanine ligase CH92_04755 PF02548 Ketopantoate hydroxymethyltransferase CH92_04760 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH92_04765 PF01743 Poly A polymerase head domain CH92_04765 PF12626 Polymerase A arginine-rich C-terminus CH92_04765 PF12627 Probable RNA and SrmB- binding site of polymerase A CH92_04770 PF00158 Sigma-54 interaction domain CH92_04770 PF00072 Response regulator receiver domain CH92_04770 PF02954 Bacterial regulatory protein, Fis family CH92_04775 PF00989 PAS fold CH92_04775 PF08447 PAS fold CH92_04775 PF00512 His Kinase A (phospho-acceptor) domain CH92_04775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_04785 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH92_04790 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH92_04795 PF00155 Aminotransferase class I and II CH92_04800 PF17746 SfsA N-terminal OB domain CH92_04800 PF03749 Sugar fermentation stimulation protein RE domain CH92_04805 PF07995 Glucose / Sorbosone dehydrogenase CH92_04810 PF02308 MgtC family CH92_04825 PF03641 Possible lysine decarboxylase CH92_04835 PF00106 short chain dehydrogenase CH92_04840 PF01740 STAS domain CH92_04840 PF00916 Sulfate permease family CH92_04850 PF06039 Malate:quinone oxidoreductase (Mqo) CH92_04865 PF07044 Protein of unknown function (DUF1329) CH92_04895 PF01435 Peptidase family M48 CH92_04905 PF01169 Uncharacterized protein family UPF0016 CH92_04910 PF05175 Methyltransferase small domain CH92_04910 PF08468 Methyltransferase small domain N-terminal CH92_04915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_04915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_04920 PF01810 LysE type translocator CH92_04925 PF00501 AMP-binding enzyme CH92_04925 PF13193 AMP-binding enzyme C-terminal domain CH92_04930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_04930 PF13426 PAS domain CH92_04930 PF00072 Response regulator receiver domain CH92_04935 PF00753 Metallo-beta-lactamase superfamily CH92_04940 PF13488 Glycine zipper CH92_04940 PF00691 OmpA family CH92_04945 PF00512 His Kinase A (phospho-acceptor) domain CH92_04945 PF01627 Hpt domain CH92_04945 PF00672 HAMP domain CH92_04945 PF00072 Response regulator receiver domain CH92_04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_04945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_04950 PF00990 Diguanylate cyclase, GGDEF domain CH92_04950 PF00563 EAL domain CH92_04950 PF03707 Bacterial signalling protein N terminal repeat CH92_04955 PF01553 Acyltransferase CH92_04960 PF07085 DRTGG domain CH92_04960 PF01515 Phosphate acetyl/butaryl transferase CH92_04965 PF00871 Acetokinase family CH92_04970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_04975 PF00255 Glutathione peroxidase CH92_04980 PF16925 Tetracyclin repressor-like, C-terminal domain CH92_04980 PF00440 Bacterial regulatory proteins, tetR family CH92_04985 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_04985 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_04990 PF03358 NADPH-dependent FMN reductase CH92_05015 PF02152 Dihydroneopterin aldolase CH92_05030 PF00258 Flavodoxin CH92_05040 PF01553 Acyltransferase CH92_05055 PF13091 PLD-like domain CH92_05060 PF01965 DJ-1/PfpI family CH92_05065 PF09905 DNA-binding protein VF530 CH92_05070 PF05683 Fumarase C-terminus CH92_05070 PF05681 Fumarate hydratase (Fumerase) CH92_05075 PF08448 PAS fold CH92_05075 PF00990 Diguanylate cyclase, GGDEF domain CH92_05080 PF00175 Oxidoreductase NAD-binding domain CH92_05080 PF00970 Oxidoreductase FAD-binding domain CH92_05080 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_05085 PF02887 Pyruvate kinase, alpha/beta domain CH92_05085 PF00224 Pyruvate kinase, barrel domain CH92_05110 PF07726 ATPase family associated with various cellular activities (AAA) CH92_05110 PF17863 AAA lid domain CH92_05140 PF00929 Exonuclease CH92_05140 PF08411 Exonuclease C-terminal CH92_05150 PF01842 ACT domain CH92_05150 PF00551 Formyl transferase CH92_05160 PF05872 Bacterial protein of unknown function (DUF853) CH92_05170 PF00483 Nucleotidyl transferase CH92_05170 PF01050 Mannose-6-phosphate isomerase CH92_05175 PF03883 Peroxide stress protein YaaA CH92_05185 PF13638 PIN domain CH92_05185 PF02562 PhoH-like protein CH92_05190 PF01967 MoaC family CH92_05195 PF02597 ThiS family CH92_05200 PF02391 MoaE protein CH92_05205 PF00270 DEAD/DEAH box helicase CH92_05205 PF00271 Helicase conserved C-terminal domain CH92_05210 PF08448 PAS fold CH92_05210 PF00990 Diguanylate cyclase, GGDEF domain CH92_05215 PF02230 Phospholipase/Carboxylesterase CH92_05220 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_05225 PF00528 Binding-protein-dependent transport system inner membrane component CH92_05230 PF00528 Binding-protein-dependent transport system inner membrane component CH92_05235 PF00005 ABC transporter CH92_05240 PF02769 AIR synthase related protein, C-terminal domain CH92_05240 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH92_05240 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH92_05245 PF01784 NIF3 (NGG1p interacting factor 3) CH92_05250 PF02566 OsmC-like protein CH92_05255 PF01047 MarR family CH92_05260 PF03734 L,D-transpeptidase catalytic domain CH92_05265 PF09297 NADH pyrophosphatase zinc ribbon domain CH92_05265 PF00293 NUDIX domain CH92_05275 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_05285 PF02222 ATP-grasp domain CH92_05285 PF01370 NAD dependent epimerase/dehydratase family CH92_05290 PF00571 CBS domain CH92_05290 PF03471 Transporter associated domain CH92_05290 PF01595 Cyclin M transmembrane N-terminal domain CH92_05295 PF01578 Cytochrome C assembly protein CH92_05300 PF02978 Signal peptide binding domain CH92_05300 PF02881 SRP54-type protein, helical bundle domain CH92_05300 PF00448 SRP54-type protein, GTPase domain CH92_05305 PF00886 Ribosomal protein S16 CH92_05310 PF05239 PRC-barrel domain CH92_05310 PF01782 RimM N-terminal domain CH92_05315 PF01746 tRNA (Guanine-1)-methyltransferase CH92_05320 PF01245 Ribosomal protein L19 CH92_05325 PF02899 Phage integrase, N-terminal SAM-like domain CH92_05325 PF00589 Phage integrase family CH92_05330 PF10411 Disulfide bond isomerase protein N-terminus CH92_05330 PF13098 Thioredoxin-like domain CH92_05335 PF04828 Glutathione-dependent formaldehyde-activating enzyme CH92_05340 PF03447 Homoserine dehydrogenase, NAD binding domain CH92_05340 PF01842 ACT domain CH92_05340 PF00742 Homoserine dehydrogenase CH92_05345 PF14821 Threonine synthase N terminus CH92_05345 PF00291 Pyridoxal-phosphate dependent enzyme CH92_05350 PF00392 Bacterial regulatory proteins, gntR family CH92_05350 PF07729 FCD domain CH92_05360 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_05370 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_05375 PF00378 Enoyl-CoA hydratase/isomerase CH92_05380 PF02515 CoA-transferase family III CH92_05385 PF00266 Aminotransferase class-V CH92_05390 PF02913 FAD linked oxidases, C-terminal domain CH92_05390 PF01565 FAD binding domain CH92_05390 PF13183 4Fe-4S dicluster domain CH92_05395 PF00929 Exonuclease CH92_05400 PF01979 Amidohydrolase family CH92_05410 PF02470 MlaD protein CH92_05415 PF04403 Paraquat-inducible protein A CH92_05420 PF04403 Paraquat-inducible protein A CH92_05430 PF00764 Arginosuccinate synthase CH92_05435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_05445 PF10576 Iron-sulfur binding domain of endonuclease III CH92_05445 PF00633 Helix-hairpin-helix motif CH92_05445 PF00730 HhH-GPD superfamily base excision DNA repair protein CH92_05450 PF02508 Rnf-Nqr subunit, membrane protein CH92_05455 PF04205 FMN-binding domain CH92_05460 PF03116 NQR2, RnfD, RnfE family CH92_05465 PF12838 4Fe-4S dicluster domain CH92_05465 PF10531 SLBB domain CH92_05465 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH92_05465 PF13375 RnfC Barrel sandwich hybrid domain CH92_05470 PF04060 Putative Fe-S cluster CH92_05475 PF02508 Rnf-Nqr subunit, membrane protein CH92_05485 PF00378 Enoyl-CoA hydratase/isomerase CH92_05490 PF13458 Periplasmic binding protein CH92_05495 PF03167 Uracil DNA glycosylase superfamily CH92_05510 PF01571 Aminomethyltransferase folate-binding domain CH92_05515 PF03937 Flavinator of succinate dehydrogenase CH92_05525 PF00890 FAD binding domain CH92_05525 PF02910 Fumarate reductase flavoprotein C-term CH92_05530 PF08281 Sigma-70, region 4 CH92_05530 PF04542 Sigma-70 region 2 CH92_05535 PF03872 Anti sigma-E protein RseA, N-terminal domain CH92_05535 PF03873 Anti sigma-E protein RseA, C-terminal domain CH92_05540 PF17188 MucB/RseB C-terminal domain CH92_05540 PF03888 MucB/RseB N-terminal domain CH92_05550 PF13180 PDZ domain CH92_05555 PF00679 Elongation factor G C-terminus CH92_05555 PF06421 GTP-binding protein LepA C-terminus CH92_05555 PF03144 Elongation factor Tu domain 2 CH92_05555 PF00009 Elongation factor Tu GTP binding domain CH92_05560 PF10502 Signal peptidase, peptidase S26 CH92_05570 PF00035 Double-stranded RNA binding motif CH92_05570 PF14622 Ribonuclease-III-like CH92_05575 PF01926 50S ribosome-binding GTPase CH92_05575 PF07650 KH domain CH92_05580 PF11967 Recombination protein O N terminal CH92_05580 PF02565 Recombination protein O C terminal CH92_05585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH92_05590 PF11146 Protein of unknown function (DUF2905) CH92_05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_05595 PF03466 LysR substrate binding domain CH92_05605 PF08003 Protein of unknown function (DUF1698) CH92_05610 PF13649 Methyltransferase domain CH92_05620 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH92_05620 PF05362 Lon protease (S16) C-terminal proteolytic domain CH92_05620 PF00004 ATPase family associated with various cellular activities (AAA) CH92_05625 PF12833 Helix-turn-helix domain CH92_05630 PF01619 Proline dehydrogenase CH92_05630 PF14850 DNA-binding domain of Proline dehydrogenase CH92_05630 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH92_05630 PF00171 Aldehyde dehydrogenase family CH92_05635 PF00474 Sodium:solute symporter family CH92_05645 PF00474 Sodium:solute symporter family CH92_05690 PF06114 IrrE N-terminal-like domain CH92_05705 PF01479 S4 domain CH92_05705 PF00849 RNA pseudouridylate synthase CH92_05710 PF09334 tRNA synthetases class I (M) CH92_05710 PF01588 Putative tRNA binding domain CH92_05715 PF10609 NUBPL iron-transfer P-loop NTPase CH92_05720 PF00313 'Cold-shock' DNA-binding domain CH92_05725 PF00692 dUTPase CH92_05730 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH92_05730 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH92_05735 PF01810 LysE type translocator CH92_05740 PF03466 LysR substrate binding domain CH92_05740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_05755 PF03797 Autotransporter beta-domain CH92_05755 PF00657 GDSL-like Lipase/Acylhydrolase CH92_05760 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH92_05760 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH92_05775 PF00175 Oxidoreductase NAD-binding domain CH92_05775 PF00042 Globin CH92_05775 PF00970 Oxidoreductase FAD-binding domain CH92_05790 PF00224 Pyruvate kinase, barrel domain CH92_05790 PF02887 Pyruvate kinase, alpha/beta domain CH92_05795 PF13660 Domain of unknown function (DUF4147) CH92_05795 PF05161 MOFRL family CH92_05800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH92_05800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH92_05805 PF01261 Xylose isomerase-like TIM barrel CH92_05810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH92_05810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH92_05810 PF00205 Thiamine pyrophosphate enzyme, central domain CH92_05815 PF03466 LysR substrate binding domain CH92_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_05820 PF00576 HIUase/Transthyretin family CH92_05830 PF00486 Transcriptional regulatory protein, C terminal CH92_05830 PF00072 Response regulator receiver domain CH92_05835 PF00672 HAMP domain CH92_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_05835 PF00512 His Kinase A (phospho-acceptor) domain CH92_05840 PF03372 Endonuclease/Exonuclease/phosphatase family CH92_05845 PF08495 FIST N domain CH92_05845 PF00563 EAL domain CH92_05845 PF00990 Diguanylate cyclase, GGDEF domain CH92_05845 PF10442 FIST C domain CH92_05860 PF02321 Outer membrane efflux protein CH92_05865 PF13533 Biotin-lipoyl like CH92_05880 PF12833 Helix-turn-helix domain CH92_05880 PF06719 AraC-type transcriptional regulator N-terminus CH92_05885 PF18381 YcaO cyclodehydratase C-terminal domain CH92_05885 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH92_05895 PF00072 Response regulator receiver domain CH92_05895 PF08448 PAS fold CH92_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_05895 PF13188 PAS domain CH92_05895 PF00512 His Kinase A (phospho-acceptor) domain CH92_05900 PF06745 KaiC CH92_05925 PF01751 Toprim domain CH92_05925 PF01131 DNA topoisomerase CH92_05930 PF10672 S-adenosylmethionine-dependent methyltransferase CH92_05935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_05935 PF00072 Response regulator receiver domain CH92_05935 PF13426 PAS domain CH92_05950 PF03783 Curli production assembly/transport component CsgG CH92_05970 PF01810 LysE type translocator CH92_05980 PF00248 Aldo/keto reductase family CH92_05985 PF00106 short chain dehydrogenase CH92_06015 PF07995 Glucose / Sorbosone dehydrogenase CH92_06020 PF01011 PQQ enzyme repeat CH92_06025 PF17783 CvfB-like winged helix domain CH92_06025 PF13509 S1 domain CH92_06045 PF13614 AAA domain CH92_06050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH92_06050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH92_06050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH92_06065 PF16363 GDP-mannose 4,6 dehydratase CH92_06070 PF01370 NAD dependent epimerase/dehydratase family CH92_06080 PF00535 Glycosyl transferase family 2 CH92_06090 PF00150 Cellulase (glycosyl hydrolase family 5) CH92_06095 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH92_06115 PF00150 Cellulase (glycosyl hydrolase family 5) CH92_06165 PF03631 Virulence factor BrkB CH92_06170 PF13439 Glycosyltransferase Family 4 CH92_06170 PF00534 Glycosyl transferases group 1 CH92_06190 PF00037 4Fe-4S binding domain CH92_06190 PF11953 Domain of unknown function (DUF3470) CH92_06195 PF05188 MutS domain II CH92_06195 PF05190 MutS family domain IV CH92_06195 PF01624 MutS domain I CH92_06195 PF00488 MutS domain V CH92_06195 PF05192 MutS domain III CH92_06205 PF02464 Competence-damaged protein CH92_06210 PF00154 recA bacterial DNA recombination protein CH92_06215 PF02631 RecX family CH92_06240 PF00892 EamA-like transporter family CH92_06245 PF00072 Response regulator receiver domain CH92_06245 PF00196 Bacterial regulatory proteins, luxR family CH92_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_06250 PF03466 LysR substrate binding domain CH92_06255 PF00970 Oxidoreductase FAD-binding domain CH92_06255 PF00175 Oxidoreductase NAD-binding domain CH92_06260 PF02810 SEC-C motif CH92_06270 PF05736 OprF membrane domain CH92_06270 PF00691 OmpA family CH92_06280 PF06733 DEAD_2 CH92_06280 PF13307 Helicase C-terminal domain CH92_06285 PF00144 Beta-lactamase CH92_06290 PF04972 BON domain CH92_06290 PF00691 OmpA family CH92_06295 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH92_06295 PF01243 Pyridoxamine 5'-phosphate oxidase CH92_06305 PF05433 Glycine zipper 2TM domain CH92_06310 PF13244 Domain of unknown function (DUF4040) CH92_06310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH92_06310 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CH92_06310 PF00361 Proton-conducting membrane transporter CH92_06315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH92_06320 PF00361 Proton-conducting membrane transporter CH92_06330 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CH92_06335 PF03334 Na+/H+ antiporter subunit CH92_06340 PF01909 Nucleotidyltransferase domain CH92_06340 PF08335 GlnD PII-uridylyltransferase CH92_06340 PF01842 ACT domain CH92_06340 PF01966 HD domain CH92_06345 PF00557 Metallopeptidase family M24 CH92_06350 PF00318 Ribosomal protein S2 CH92_06355 PF00889 Elongation factor TS CH92_06360 PF00696 Amino acid kinase family CH92_06365 PF01765 Ribosome recycling factor CH92_06370 PF01255 Putative undecaprenyl diphosphate synthase CH92_06380 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH92_06380 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH92_06380 PF13288 DXP reductoisomerase C-terminal domain CH92_06385 PF17820 PDZ domain CH92_06385 PF13180 PDZ domain CH92_06385 PF02163 Peptidase family M50 CH92_06390 PF07244 Surface antigen variable number repeat CH92_06390 PF01103 Surface antigen CH92_06395 PF03938 Outer membrane protein (OmpH-like) CH92_06400 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH92_06400 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_06405 PF07977 FabA-like domain CH92_06410 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH92_06410 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_06415 PF02684 Lipid-A-disaccharide synthetase CH92_06420 PF01351 Ribonuclease HII CH92_06425 PF14579 Helix-hairpin-helix motif CH92_06425 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH92_06425 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH92_06425 PF02811 PHP domain CH92_06425 PF01336 OB-fold nucleic acid binding domain CH92_06430 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH92_06435 PF01171 PP-loop family CH92_06435 PF09179 TilS substrate binding domain CH92_06435 PF11734 TilS substrate C-terminal domain CH92_06440 PF00117 Glutamine amidotransferase class-I CH92_06440 PF06418 CTP synthase N-terminus CH92_06445 PF00793 DAHP synthetase I family CH92_06450 PF00113 Enolase, C-terminal TIM barrel domain CH92_06450 PF03952 Enolase, N-terminal domain CH92_06455 PF04977 Septum formation initiator CH92_06460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH92_06475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_06475 PF03466 LysR substrate binding domain CH92_06480 PF08240 Alcohol dehydrogenase GroES-like domain CH92_06480 PF00107 Zinc-binding dehydrogenase CH92_06485 PF00756 Putative esterase CH92_06490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_06495 PF01022 Bacterial regulatory protein, arsR family CH92_06500 PF02542 YgbB family CH92_06505 PF01142 tRNA pseudouridine synthase D (TruD) CH92_06510 PF01975 Survival protein SurE CH92_06525 PF01551 Peptidase family M23 CH92_06525 PF01476 LysM domain CH92_06530 PF00140 Sigma-70 factor, region 1.2 CH92_06530 PF04539 Sigma-70 region 3 CH92_06530 PF04545 Sigma-70, region 4 CH92_06530 PF04542 Sigma-70 region 2 CH92_06545 PF00474 Sodium:solute symporter family CH92_06560 PF01725 Ham1 family CH92_06570 PF00582 Universal stress protein family CH92_06575 PF01844 HNH endonuclease CH92_06580 PF01709 Transcriptional regulator CH92_06585 PF00892 EamA-like transporter family CH92_06595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_06595 PF16591 Helical bimodular sensor domain CH92_06595 PF00672 HAMP domain CH92_06600 PF13286 Phosphohydrolase-associated domain CH92_06600 PF01966 HD domain CH92_06605 PF00909 Ammonium Transporter Family CH92_06625 PF00873 AcrB/AcrD/AcrF family CH92_06630 PF00440 Bacterial regulatory proteins, tetR family CH92_06635 PF02798 Glutathione S-transferase, N-terminal domain CH92_06635 PF00043 Glutathione S-transferase, C-terminal domain CH92_06655 PF02567 Phenazine biosynthesis-like protein CH92_06660 PF00155 Aminotransferase class I and II CH92_06660 PF00392 Bacterial regulatory proteins, gntR family CH92_06665 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CH92_06665 PF13746 4Fe-4S dicluster domain CH92_06665 PF12801 4Fe-4S binding domain CH92_06675 PF03788 LrgA family CH92_06680 PF04172 LrgB-like family CH92_06685 PF00561 alpha/beta hydrolase fold CH92_06690 PF03358 NADPH-dependent FMN reductase CH92_06700 PF00271 Helicase conserved C-terminal domain CH92_06700 PF12419 SNF2 Helicase protein CH92_06700 PF00176 SNF2 family N-terminal domain CH92_06705 PF17757 UvrB interaction domain CH92_06705 PF03461 TRCF domain CH92_06705 PF02559 CarD-like/TRCF domain CH92_06705 PF00270 DEAD/DEAH box helicase CH92_06705 PF00271 Helicase conserved C-terminal domain CH92_06710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_06710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH92_06715 PF11973 NQRA C-terminal domain CH92_06715 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH92_06720 PF03116 NQR2, RnfD, RnfE family CH92_06725 PF04205 FMN-binding domain CH92_06730 PF02508 Rnf-Nqr subunit, membrane protein CH92_06735 PF02508 Rnf-Nqr subunit, membrane protein CH92_06740 PF00175 Oxidoreductase NAD-binding domain CH92_06740 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_06740 PF00970 Oxidoreductase FAD-binding domain CH92_06745 PF02424 ApbE family CH92_06755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_06755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH92_06760 PF03009 Glycerophosphoryl diester phosphodiesterase family CH92_06775 PF02687 FtsX-like permease family CH92_06775 PF12704 MacB-like periplasmic core domain CH92_06780 PF00005 ABC transporter CH92_06785 PF02687 FtsX-like permease family CH92_06785 PF12704 MacB-like periplasmic core domain CH92_06795 PF00753 Metallo-beta-lactamase superfamily CH92_06795 PF03772 Competence protein CH92_06800 PF01618 MotA/TolQ/ExbB proton channel family CH92_06810 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH92_06815 PF03966 Trm112p-like protein CH92_06820 PF02348 Cytidylyltransferase CH92_06825 PF01451 Low molecular weight phosphotyrosine protein phosphatase CH92_06830 PF01565 FAD binding domain CH92_06830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH92_06845 PF00575 S1 RNA binding domain CH92_06845 PF12111 Polyribonucleotide phosphorylase C terminal CH92_06845 PF10150 Ribonuclease E/G family CH92_06850 PF00849 RNA pseudouridylate synthase CH92_06850 PF01479 S4 domain CH92_06855 PF13419 Haloacid dehalogenase-like hydrolase CH92_06860 PF06965 Na+/H+ antiporter 1 CH92_06860 PF01343 Peptidase family S49 CH92_06865 PF02545 Maf-like protein CH92_06870 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH92_06875 PF01783 Ribosomal L32p protein family CH92_06880 PF02504 Fatty acid synthesis protein CH92_06885 PF00698 Acyl transferase domain CH92_06895 PF00550 Phosphopantetheine attachment site CH92_06900 PF00109 Beta-ketoacyl synthase, N-terminal domain CH92_06900 PF02801 Beta-ketoacyl synthase, C-terminal domain CH92_06905 PF01063 Amino-transferase class IV CH92_06910 PF02618 YceG-like family CH92_06915 PF02223 Thymidylate kinase CH92_06920 PF09115 DNA polymerase III, delta subunit, C terminal CH92_06930 PF01026 TatD related DNase CH92_06935 PF00324 Amino acid permease CH92_06940 PF00266 Aminotransferase class-V CH92_06945 PF00440 Bacterial regulatory proteins, tetR family CH92_06965 PF13847 Methyltransferase domain CH92_06970 PF07687 Peptidase dimerisation domain CH92_06970 PF01546 Peptidase family M20/M25/M40 CH92_06975 PF00899 ThiF family CH92_06980 PF02657 Fe-S metabolism associated domain CH92_06985 PF00266 Aminotransferase class-V CH92_06990 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CH92_06990 PF14602 Hexapeptide repeat of succinyl-transferase CH92_06995 PF03960 ArsC family CH92_07015 PF00155 Aminotransferase class I and II CH92_07030 PF00551 Formyl transferase CH92_07035 PF02769 AIR synthase related protein, C-terminal domain CH92_07035 PF00586 AIR synthase related protein, N-terminal domain CH92_07045 PF01594 AI-2E family transporter CH92_07050 PF00308 Bacterial dnaA protein CH92_07060 PF03358 NADPH-dependent FMN reductase CH92_07065 PF03960 ArsC family CH92_07070 PF03631 Virulence factor BrkB CH92_07090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH92_07090 PF04073 Aminoacyl-tRNA editing domain CH92_07090 PF03129 Anticodon binding domain CH92_07095 PF03573 outer membrane porin, OprD family CH92_07105 PF04102 SlyX CH92_07110 PF00313 'Cold-shock' DNA-binding domain CH92_07115 PF00210 Ferritin-like domain CH92_07120 PF02938 GAD domain CH92_07120 PF00152 tRNA synthetases class II (D, K and N) CH92_07120 PF01336 OB-fold nucleic acid binding domain CH92_07125 PF01709 Transcriptional regulator CH92_07130 PF02075 Crossover junction endodeoxyribonuclease RuvC CH92_07135 PF01330 RuvA N terminal domain CH92_07135 PF07499 RuvA, C-terminal domain CH92_07140 PF05491 RuvB C-terminal winged helix domain CH92_07140 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH92_07140 PF17864 RuvB AAA lid domain CH92_07145 PF03061 Thioesterase superfamily CH92_07150 PF01618 MotA/TolQ/ExbB proton channel family CH92_07155 PF02472 Biopolymer transport protein ExbD/TolR CH92_07165 PF07676 WD40-like Beta Propeller Repeat CH92_07165 PF04052 TolB amino-terminal domain CH92_07170 PF00691 OmpA family CH92_07175 PF16331 TolA binding protein trimerisation CH92_07175 PF13525 Outer membrane lipoprotein CH92_07185 PF06508 Queuosine biosynthesis protein QueC CH92_07195 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH92_07195 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH92_07200 PF02445 Quinolinate synthetase A protein CH92_07205 PF01435 Peptidase family M48 CH92_07210 PF01206 Sulfurtransferase TusA CH92_07215 PF01594 AI-2E family transporter CH92_07220 PF00578 AhpC/TSA family CH92_07230 PF00701 Dihydrodipicolinate synthetase family CH92_07240 PF01259 SAICAR synthetase CH92_07260 PF05199 GMC oxidoreductase CH92_07260 PF00732 GMC oxidoreductase CH92_07270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_07270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_07275 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CH92_07275 PF12833 Helix-turn-helix domain CH92_07295 PF02333 Phytase CH92_07300 PF01618 MotA/TolQ/ExbB proton channel family CH92_07305 PF02472 Biopolymer transport protein ExbD/TolR CH92_07330 PF05199 GMC oxidoreductase CH92_07330 PF00732 GMC oxidoreductase CH92_07335 PF00034 Cytochrome c CH92_07335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_07345 PF13617 YnbE-like lipoprotein CH92_07360 PF02646 RmuC family CH92_07365 PF00512 His Kinase A (phospho-acceptor) domain CH92_07365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_07385 PF07690 Major Facilitator Superfamily CH92_07390 PF07148 Maltose operon periplasmic protein precursor (MalM) CH92_07395 PF02264 LamB porin CH92_07405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_07405 PF03466 LysR substrate binding domain CH92_07410 PF00775 Dioxygenase CH92_07410 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CH92_07415 PF00775 Dioxygenase CH92_07420 PF03969 AFG1-like ATPase CH92_07425 PF03547 Membrane transport protein CH92_07430 PF00206 Lyase CH92_07430 PF10397 Adenylosuccinate lyase C-terminus CH92_07435 PF02627 Carboxymuconolactone decarboxylase family CH92_07445 PF00128 Alpha amylase, catalytic domain CH92_07450 PF01547 Bacterial extracellular solute-binding protein CH92_07455 PF00528 Binding-protein-dependent transport system inner membrane component CH92_07455 PF14785 Maltose transport system permease protein MalF P2 domain CH92_07460 PF00528 Binding-protein-dependent transport system inner membrane component CH92_07465 PF17874 MalT-like TPR region CH92_07465 PF00196 Bacterial regulatory proteins, luxR family CH92_07470 PF14602 Hexapeptide repeat of succinyl-transferase CH92_07470 PF12464 Maltose acetyltransferase CH92_07480 PF00128 Alpha amylase, catalytic domain CH92_07485 PF00005 ABC transporter CH92_07485 PF17912 MalK OB fold domain CH92_07490 PF00893 Small Multidrug Resistance protein CH92_07495 PF01758 Sodium Bile acid symporter family CH92_07500 PF04381 Putative exonuclease, RdgC CH92_07515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_07515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH92_07530 PF00155 Aminotransferase class I and II CH92_07535 PF17757 UvrB interaction domain CH92_07535 PF12344 Ultra-violet resistance protein B CH92_07535 PF02151 UvrB/uvrC motif CH92_07535 PF04851 Type III restriction enzyme, res subunit CH92_07535 PF00271 Helicase conserved C-terminal domain CH92_07540 PF07690 Major Facilitator Superfamily CH92_07545 PF13533 Biotin-lipoyl like CH92_07550 PF03466 LysR substrate binding domain CH92_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_07555 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH92_07600 PF11798 IMS family HHH motif CH92_07600 PF00817 impB/mucB/samB family CH92_07615 PF01738 Dienelactone hydrolase family CH92_07620 PF07690 Major Facilitator Superfamily CH92_07625 PF17283 SprT-like zinc ribbon domain CH92_07625 PF10263 SprT-like family CH92_07635 PF04893 Yip1 domain CH92_07645 PF01171 PP-loop family CH92_07650 PF00793 DAHP synthetase I family CH92_07655 PF03352 Methyladenine glycosylase CH92_07660 PF02146 Sir2 family CH92_07665 PF00877 NlpC/P60 family CH92_07670 PF00877 NlpC/P60 family CH92_07680 PF03600 Citrate transporter CH92_07695 PF00593 TonB dependent receptor CH92_07695 PF07715 TonB-dependent Receptor Plug Domain CH92_07705 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH92_07705 PF12557 Cob(I)alamin adenosyltransferase N terminal CH92_07710 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH92_07710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH92_07715 PF00881 Nitroreductase family CH92_07720 PF17113 Regulatory signalling modulator protein AmpE CH92_07720 PF03186 CobD/Cbib protein CH92_07725 PF00155 Aminotransferase class I and II CH92_07730 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH92_07730 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH92_07735 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH92_07740 PF02277 Phosphoribosyltransferase CH92_07745 PF00300 Histidine phosphatase superfamily (branch 1) CH92_07750 PF02654 Cobalamin-5-phosphate synthase CH92_07755 PF00005 ABC transporter CH92_07755 PF03459 TOBE domain CH92_07760 PF00528 Binding-protein-dependent transport system inner membrane component CH92_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_07770 PF03459 TOBE domain CH92_07775 PF00255 Glutathione peroxidase CH92_07780 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH92_07785 PF00581 Rhodanese-like domain CH92_07790 PF01612 3'-5' exonuclease CH92_07790 PF00570 HRDC domain CH92_07795 PF05166 YcgL domain CH92_07800 PF03692 Putative zinc- or iron-chelating domain CH92_07810 PF01212 Beta-eliminating lyase CH92_07815 PF01411 tRNA synthetases class II (A) CH92_07815 PF02272 DHHA1 domain CH92_07815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH92_07820 PF13840 ACT domain CH92_07820 PF00696 Amino acid kinase family CH92_07820 PF01842 ACT domain CH92_07825 PF02599 Global regulator protein family CH92_07850 PF00571 CBS domain CH92_07850 PF01769 Divalent cation transporter CH92_07850 PF03448 MgtE intracellular N domain CH92_07855 PF04277 Oxaloacetate decarboxylase, gamma chain CH92_07860 PF00682 HMGL-like CH92_07860 PF02436 Conserved carboxylase domain CH92_07860 PF00364 Biotin-requiring enzyme CH92_07865 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CH92_07890 PF07238 PilZ domain CH92_07890 PF07317 Flagellar regulator YcgR CH92_07910 PF01584 CheW-like domain CH92_07910 PF00072 Response regulator receiver domain CH92_07915 PF03705 CheR methyltransferase, all-alpha domain CH92_07915 PF01739 CheR methyltransferase, SAM binding domain CH92_07920 PF00460 Flagella basal body rod protein CH92_07925 PF00460 Flagella basal body rod protein CH92_07925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH92_07930 PF03963 Flagellar hook capping protein - N-terminal region CH92_07930 PF13860 FlgD Ig-like domain CH92_07930 PF13861 FlgD Tudor-like domain CH92_07935 PF07559 Flagellar basal body protein FlaE CH92_07935 PF00460 Flagella basal body rod protein CH92_07935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH92_07940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH92_07940 PF00460 Flagella basal body rod protein CH92_07945 PF00460 Flagella basal body rod protein CH92_07945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH92_07950 PF02107 Flagellar L-ring protein CH92_07955 PF02119 Flagellar P-ring protein CH92_07960 PF10135 Rod binding protein CH92_07960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH92_07965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH92_07965 PF00460 Flagella basal body rod protein CH92_07970 PF00700 Bacterial flagellin C-terminal helical region CH92_07970 PF00460 Flagella basal body rod protein CH92_07970 PF00669 Bacterial flagellin N-terminal helical region CH92_08000 PF05231 MASE1 CH92_08000 PF00563 EAL domain CH92_08005 PF11818 C-terminal domain of tail specific protease (DUF3340) CH92_08005 PF00595 PDZ domain CH92_08005 PF17804 Tail specific protease N-terminal domain CH92_08005 PF03572 Peptidase family S41 CH92_08010 PF02127 Aminopeptidase I zinc metalloprotease (M18) CH92_08015 PF00849 RNA pseudouridylate synthase CH92_08020 PF03776 Septum formation topological specificity factor MinE CH92_08025 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH92_08030 PF03775 Septum formation inhibitor MinC, C-terminal domain CH92_08030 PF05209 Septum formation inhibitor MinC, N-terminal domain CH92_08035 PF03279 Bacterial lipid A biosynthesis acyltransferase CH92_08040 PF02678 Pirin CH92_08040 PF05726 Pirin C-terminal cupin domain CH92_08045 PF04333 MlaA lipoprotein CH92_08060 PF04341 Protein of unknown function, DUF485 CH92_08065 PF00474 Sodium:solute symporter family CH92_08075 PF00665 Integrase core domain CH92_08075 PF13333 Integrase core domain CH92_08075 PF13276 HTH-like domain CH92_08080 PF00106 short chain dehydrogenase CH92_08080 PF00561 alpha/beta hydrolase fold CH92_08095 PF06794 Uncharacterised protein family (UPF0270) CH92_08100 PF01627 Hpt domain CH92_08100 PF00072 Response regulator receiver domain CH92_08100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_08100 PF00512 His Kinase A (phospho-acceptor) domain CH92_08100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_08100 PF00672 HAMP domain CH92_08105 PF05343 M42 glutamyl aminopeptidase CH92_08115 PF13537 Glutamine amidotransferase domain CH92_08115 PF00733 Asparagine synthase CH92_08120 PF03466 LysR substrate binding domain CH92_08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_08130 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH92_08130 PF01266 FAD dependent oxidoreductase CH92_08135 PF03976 Polyphosphate kinase 2 (PPK2) CH92_08140 PF00108 Thiolase, N-terminal domain CH92_08140 PF02803 Thiolase, C-terminal domain CH92_08145 PF00206 Lyase CH92_08145 PF10415 Fumarase C C-terminus CH92_08155 PF01722 BolA-like protein CH92_08170 PF00664 ABC transporter transmembrane region CH92_08170 PF00005 ABC transporter CH92_08175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_08175 PF16591 Helical bimodular sensor domain CH92_08175 PF00672 HAMP domain CH92_08190 PF00472 RF-1 domain CH92_08200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_08200 PF03466 LysR substrate binding domain CH92_08210 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_08210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_08210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_08215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_08220 PF03972 MmgE/PrpD family CH92_08225 PF02515 CoA-transferase family III CH92_08230 PF03328 HpcH/HpaI aldolase/citrate lyase family CH92_08235 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_08245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_08245 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_08245 PF09317 Domain of unknown function (DUF1974) CH92_08245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_08250 PF00005 ABC transporter CH92_08255 PF01061 ABC-2 type transporter CH92_08260 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH92_08260 PF14489 QueF-like protein CH92_08270 PF04333 MlaA lipoprotein CH92_08280 PF00072 Response regulator receiver domain CH92_08290 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH92_08295 PF01207 Dihydrouridine synthase (Dus) CH92_08300 PF01970 Tripartite tricarboxylate transporter TctA family CH92_08310 PF03401 Tripartite tricarboxylate transporter family receptor CH92_08315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH92_08315 PF00205 Thiamine pyrophosphate enzyme, central domain CH92_08315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH92_08320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_08320 PF03466 LysR substrate binding domain CH92_08325 PF00561 alpha/beta hydrolase fold CH92_08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_08330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH92_08335 PF01336 OB-fold nucleic acid binding domain CH92_08335 PF02811 PHP domain CH92_08335 PF14579 Helix-hairpin-helix motif CH92_08335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH92_08335 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH92_08355 PF00578 AhpC/TSA family CH92_08355 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH92_08360 PF01008 Initiation factor 2 subunit family CH92_08365 PF03989 DNA gyrase C-terminal domain, beta-propeller CH92_08365 PF00521 DNA gyrase/topoisomerase IV, subunit A CH92_08370 PF00266 Aminotransferase class-V CH92_08375 PF01842 ACT domain CH92_08375 PF00800 Prephenate dehydratase CH92_08375 PF01817 Chorismate mutase type II CH92_08380 PF00155 Aminotransferase class I and II CH92_08385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH92_08390 PF02224 Cytidylate kinase CH92_08395 PF00575 S1 RNA binding domain CH92_08405 PF00155 Aminotransferase class I and II CH92_08410 PF14497 Glutathione S-transferase, C-terminal domain CH92_08410 PF02798 Glutathione S-transferase, N-terminal domain CH92_08415 PF01227 GTP cyclohydrolase I CH92_08420 PF01713 Smr domain CH92_08435 PF05175 Methyltransferase small domain CH92_08450 PF01264 Chorismate synthase CH92_08455 PF12832 MFS_1 like family CH92_08460 PF00596 Class II Aldolase and Adducin N-terminal domain CH92_08465 PF03079 ARD/ARD' family CH92_08490 PF06029 AlkA N-terminal domain CH92_08490 PF00730 HhH-GPD superfamily base excision DNA repair protein CH92_08495 PF17284 Spermidine synthase tetramerisation domain CH92_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_08505 PF03466 LysR substrate binding domain CH92_08515 PF01554 MatE CH92_08520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_08520 PF11890 Domain of unknown function (DUF3410) CH92_08520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_08525 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH92_08525 PF12169 DNA polymerase III subunits gamma and tau domain III CH92_08525 PF12170 DNA polymerase III tau subunit V interacting with alpha CH92_08530 PF02575 YbaB/EbfC DNA-binding family CH92_08535 PF13662 Toprim domain CH92_08535 PF02132 RecR protein CH92_08545 PF00005 ABC transporter CH92_08550 PF00528 Binding-protein-dependent transport system inner membrane component CH92_08560 PF02630 SCO1/SenC CH92_08565 PF00156 Phosphoribosyl transferase domain CH92_08570 PF00027 Cyclic nucleotide-binding domain CH92_08570 PF00325 Bacterial regulatory proteins, crp family CH92_08575 PF04055 Radical SAM superfamily CH92_08575 PF06969 HemN C-terminal domain CH92_08580 PF02540 NAD synthase CH92_08595 PF00403 Heavy-metal-associated domain CH92_08605 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CH92_08605 PF12801 4Fe-4S binding domain CH92_08605 PF13746 4Fe-4S dicluster domain CH92_08610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_08610 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CH92_08625 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_08630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_08630 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CH92_08640 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_08650 PF08447 PAS fold CH92_08650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_08655 PF00694 Aconitase C-terminal domain CH92_08655 PF00330 Aconitase family (aconitate hydratase) CH92_08660 PF18125 RlmM ferredoxin-like domain CH92_08660 PF01728 FtsJ-like methyltransferase CH92_08665 PF01206 Sulfurtransferase TusA CH92_08675 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_08695 PF00027 Cyclic nucleotide-binding domain CH92_08695 PF00520 Ion transport protein CH92_08700 PF04055 Radical SAM superfamily CH92_08700 PF06463 Molybdenum Cofactor Synthesis C CH92_08705 PF02463 RecF/RecN/SMC N terminal domain CH92_08710 PF04354 ZipA, C-terminal FtsZ-binding domain CH92_08715 PF12826 Helix-hairpin-helix motif CH92_08715 PF01653 NAD-dependent DNA ligase adenylation domain CH92_08715 PF03120 NAD-dependent DNA ligase OB-fold domain CH92_08715 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH92_08715 PF00533 BRCA1 C Terminus (BRCT) domain CH92_08730 PF00700 Bacterial flagellin C-terminal helical region CH92_08730 PF00669 Bacterial flagellin N-terminal helical region CH92_08740 PF07196 Flagellin hook IN motif CH92_08740 PF07195 Flagellar hook-associated protein 2 C-terminus CH92_08740 PF02465 Flagellar hook-associated protein 2 N-terminus CH92_08745 PF02561 Flagellar protein FliS CH92_08755 PF06865 Pyrimidine/purine nucleoside phosphorylase CH92_08765 PF00285 Citrate synthase, C-terminal domain CH92_08770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH92_08775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH92_08780 PF02910 Fumarate reductase flavoprotein C-term CH92_08780 PF00890 FAD binding domain CH92_08785 PF13085 2Fe-2S iron-sulfur cluster binding domain CH92_08790 PF16870 2-oxoglutarate dehydrogenase C-terminal CH92_08790 PF02779 Transketolase, pyrimidine binding domain CH92_08790 PF00676 Dehydrogenase E1 component CH92_08790 PF16078 2-oxoglutarate dehydrogenase N-terminus CH92_08795 PF00364 Biotin-requiring enzyme CH92_08795 PF02817 e3 binding domain CH92_08795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH92_08800 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_08800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH92_08805 PF08442 ATP-grasp domain CH92_08805 PF00549 CoA-ligase CH92_08810 PF00549 CoA-ligase CH92_08810 PF02629 CoA binding domain CH92_08815 PF05525 Branched-chain amino acid transport protein CH92_08840 PF00183 Hsp90 protein CH92_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_08850 PF12729 Four helix bundle sensory module for signal transduction CH92_08850 PF00672 HAMP domain CH92_08850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_08855 PF00375 Sodium:dicarboxylate symporter family CH92_08860 PF02801 Beta-ketoacyl synthase, C-terminal domain CH92_08860 PF00109 Beta-ketoacyl synthase, N-terminal domain CH92_08865 PF07977 FabA-like domain CH92_08870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH92_08870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH92_08885 PF03061 Thioesterase superfamily CH92_08895 PF00561 alpha/beta hydrolase fold CH92_08905 PF01594 AI-2E family transporter CH92_08910 PF01734 Patatin-like phospholipase CH92_08915 PF00586 AIR synthase related protein, N-terminal domain CH92_08915 PF02769 AIR synthase related protein, C-terminal domain CH92_08930 PF01613 Flavin reductase like domain CH92_08935 PF17863 AAA lid domain CH92_08935 PF07726 ATPase family associated with various cellular activities (AAA) CH92_08945 PF01841 Transglutaminase-like superfamily CH92_08945 PF13559 Domain of unknown function (DUF4129) CH92_08945 PF11992 Domain of unknown function (DUF3488) CH92_08955 PF12729 Four helix bundle sensory module for signal transduction CH92_08955 PF00672 HAMP domain CH92_08955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_08960 PF01026 TatD related DNase CH92_08965 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_08965 PF01464 Transglycosylase SLT domain CH92_08970 PF03280 Proteobacterial lipase chaperone protein CH92_08975 PF00561 alpha/beta hydrolase fold CH92_08985 PF01272 Transcription elongation factor, GreA/GreB, C-term CH92_08985 PF03449 Transcription elongation factor, N-terminal CH92_08995 PF00005 ABC transporter CH92_09000 PF13472 GDSL-like Lipase/Acylhydrolase family CH92_09010 PF17969 L,D-transpeptidase C-terminal domain CH92_09010 PF03734 L,D-transpeptidase catalytic domain CH92_09015 PF11839 Alanine-zipper, major outer membrane lipoprotein CH92_09025 PF00793 DAHP synthetase I family CH92_09030 PF02558 Ketopantoate reductase PanE/ApbA CH92_09030 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH92_09035 PF03466 LysR substrate binding domain CH92_09035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_09040 PF01507 Phosphoadenosine phosphosulfate reductase family CH92_09050 PF04715 Anthranilate synthase component I, N terminal region CH92_09050 PF00425 chorismate binding enzyme CH92_09070 PF00392 Bacterial regulatory proteins, gntR family CH92_09070 PF07729 FCD domain CH92_09080 PF00285 Citrate synthase, C-terminal domain CH92_09085 PF00330 Aconitase family (aconitate hydratase) CH92_09085 PF00694 Aconitase C-terminal domain CH92_09090 PF04303 PrpF protein CH92_09095 PF03618 Kinase/pyrophosphorylase CH92_09100 PF00391 PEP-utilising enzyme, mobile domain CH92_09100 PF02896 PEP-utilising enzyme, TIM barrel domain CH92_09100 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH92_09105 PF03737 Aldolase/RraA CH92_09110 PF01544 CorA-like Mg2+ transporter protein CH92_09120 PF05552 Conserved TM helix CH92_09130 PF00691 OmpA family CH92_09130 PF05736 OprF membrane domain CH92_09135 PF00463 Isocitrate lyase family CH92_09150 PF13673 Acetyltransferase (GNAT) domain CH92_09155 PF08007 Cupin superfamily protein CH92_09160 PF08328 Adenylosuccinate lyase C-terminal CH92_09160 PF00206 Lyase CH92_09165 PF04356 Protein of unknown function (DUF489) CH92_09175 PF00293 NUDIX domain CH92_09180 PF03971 Monomeric isocitrate dehydrogenase CH92_09185 PF00180 Isocitrate/isopropylmalate dehydrogenase CH92_09190 PF00313 'Cold-shock' DNA-binding domain CH92_09195 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH92_09200 PF02861 Clp amino terminal domain, pathogenicity island component CH92_09200 PF17871 AAA lid domain CH92_09200 PF00004 ATPase family associated with various cellular activities (AAA) CH92_09200 PF10431 C-terminal, D2-small domain, of ClpB protein CH92_09200 PF07724 AAA domain (Cdc48 subfamily) CH92_09205 PF01176 Translation initiation factor 1A / IF-1 CH92_09210 PF04376 Arginine-tRNA-protein transferase, N terminus CH92_09210 PF04377 Arginine-tRNA-protein transferase, C terminus CH92_09215 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH92_09220 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_09225 PF01580 FtsK/SpoIIIE family CH92_09225 PF09397 Ftsk gamma domain CH92_09225 PF17854 FtsK alpha domain CH92_09225 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH92_09230 PF03548 Outer membrane lipoprotein carrier protein LolA CH92_09235 PF16193 AAA C-terminal domain CH92_09235 PF12002 MgsA AAA+ ATPase C terminal CH92_09235 PF00004 ATPase family associated with various cellular activities (AAA) CH92_09240 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH92_09245 PF02403 Seryl-tRNA synthetase N-terminal domain CH92_09245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH92_09250 PF14824 Sirohaem biosynthesis protein central CH92_09250 PF10414 Sirohaem synthase dimerisation region CH92_09250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH92_09255 PF13409 Glutathione S-transferase, N-terminal domain CH92_09260 PF00591 Glycosyl transferase family, a/b domain CH92_09260 PF02885 Glycosyl transferase family, helical bundle domain CH92_09265 PF04358 DsrC like protein CH92_09270 PF04077 DsrH like protein CH92_09275 PF02635 DsrE/DsrF-like family CH92_09280 PF02635 DsrE/DsrF-like family CH92_09285 PF01027 Inhibitor of apoptosis-promoting Bax1 CH92_09295 PF00892 EamA-like transporter family CH92_09300 PF07690 Major Facilitator Superfamily CH92_09320 PF13247 4Fe-4S dicluster domain CH92_09320 PF00037 4Fe-4S binding domain CH92_09355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH92_09355 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CH92_09360 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_09365 PF00510 Cytochrome c oxidase subunit III CH92_09385 PF00355 Rieske [2Fe-2S] domain CH92_09390 PF04399 Glutaredoxin 2, C terminal domain CH92_09390 PF13417 Glutathione S-transferase, N-terminal domain CH92_09395 PF07759 Protein of unknown function (DUF1615) CH92_09410 PF01568 Molydopterin dinucleotide binding domain CH92_09410 PF00384 Molybdopterin oxidoreductase CH92_09410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_09410 PF12838 4Fe-4S dicluster domain CH92_09410 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_09420 PF01810 LysE type translocator CH92_09430 PF08281 Sigma-70, region 4 CH92_09430 PF04542 Sigma-70 region 2 CH92_09440 PF05114 Protein of unknown function (DUF692) CH92_09455 PF13419 Haloacid dehalogenase-like hydrolase CH92_09480 PF02515 CoA-transferase family III CH92_09485 PF00285 Citrate synthase, C-terminal domain CH92_09505 PF01979 Amidohydrolase family CH92_09515 PF01979 Amidohydrolase family CH92_09530 PF00005 ABC transporter CH92_09535 PF00528 Binding-protein-dependent transport system inner membrane component CH92_09545 PF00392 Bacterial regulatory proteins, gntR family CH92_09545 PF07729 FCD domain CH92_09550 PF01425 Amidase CH92_09555 PF01177 Asp/Glu/Hydantoin racemase CH92_09575 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_09580 PF04403 Paraquat-inducible protein A CH92_09585 PF04403 Paraquat-inducible protein A CH92_09590 PF02470 MlaD protein CH92_09605 PF13533 Biotin-lipoyl like CH92_09615 PF11769 Protein of unknown function (DUF3313) CH92_09625 PF00892 EamA-like transporter family CH92_09630 PF01590 GAF domain CH92_09630 PF02954 Bacterial regulatory protein, Fis family CH92_09630 PF00158 Sigma-54 interaction domain CH92_09635 PF00171 Aldehyde dehydrogenase family CH92_09640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH92_09640 PF13360 PQQ-like domain CH92_09645 PF07715 TonB-dependent Receptor Plug Domain CH92_09645 PF00593 TonB dependent receptor CH92_09660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_09660 PF08447 PAS fold CH92_09685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH92_09685 PF02753 Pili assembly chaperone PapD, C-terminal domain CH92_09710 PF01584 CheW-like domain CH92_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_09710 PF01627 Hpt domain CH92_09710 PF02895 Signal transducing histidine kinase, homodimeric domain CH92_09715 PF02203 Tar ligand binding domain homologue CH92_09715 PF00672 HAMP domain CH92_09715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_09720 PF01584 CheW-like domain CH92_09725 PF03705 CheR methyltransferase, all-alpha domain CH92_09725 PF01739 CheR methyltransferase, SAM binding domain CH92_09730 PF01339 CheB methylesterase CH92_09730 PF00072 Response regulator receiver domain CH92_09735 PF00196 Bacterial regulatory proteins, luxR family CH92_09735 PF00072 Response regulator receiver domain CH92_09740 PF13180 PDZ domain CH92_09750 PF06906 Protein of unknown function (DUF1272) CH92_09755 PF00512 His Kinase A (phospho-acceptor) domain CH92_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_09760 PF01266 FAD dependent oxidoreductase CH92_09765 PF00072 Response regulator receiver domain CH92_09765 PF13426 PAS domain CH92_09765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_09770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_09790 PF00108 Thiolase, N-terminal domain CH92_09790 PF02803 Thiolase, C-terminal domain CH92_09795 PF00072 Response regulator receiver domain CH92_09795 PF01584 CheW-like domain CH92_09805 PF00136 DNA polymerase family B CH92_09805 PF03104 DNA polymerase family B, exonuclease domain CH92_09825 PF08448 PAS fold CH92_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_09825 PF13188 PAS domain CH92_09825 PF00512 His Kinase A (phospho-acceptor) domain CH92_09825 PF00072 Response regulator receiver domain CH92_09830 PF00072 Response regulator receiver domain CH92_09830 PF01627 Hpt domain CH92_09830 PF00512 His Kinase A (phospho-acceptor) domain CH92_09830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_09830 PF00672 HAMP domain CH92_09830 PF17149 Periplasmic sensor domain found in signal transduction proteins CH92_09840 PF13581 Histidine kinase-like ATPase domain CH92_09845 PF01740 STAS domain CH92_09850 PF01740 STAS domain CH92_09850 PF08678 Rsbr N terminal CH92_09855 PF03707 Bacterial signalling protein N terminal repeat CH92_09855 PF00990 Diguanylate cyclase, GGDEF domain CH92_09855 PF00563 EAL domain CH92_09860 PF08239 Bacterial SH3 domain CH92_09875 PF03793 PASTA domain CH92_09875 PF00069 Protein kinase domain CH92_09880 PF01226 Formate/nitrite transporter CH92_09890 PF13806 Rieske-like [2Fe-2S] domain CH92_09890 PF04324 BFD-like [2Fe-2S] binding domain CH92_09890 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH92_09890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH92_09890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH92_09890 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_09895 PF00248 Aldo/keto reductase family CH92_09905 PF16884 N-terminal domain of oxidoreductase CH92_09905 PF00107 Zinc-binding dehydrogenase CH92_09945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_09950 PF01266 FAD dependent oxidoreductase CH92_09960 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH92_09975 PF02678 Pirin CH92_09975 PF17954 Quercetinase C-terminal cupin domain CH92_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_09980 PF03466 LysR substrate binding domain CH92_09990 PF07690 Major Facilitator Superfamily CH92_10005 PF07690 Major Facilitator Superfamily CH92_10010 PF02311 AraC-like ligand binding domain CH92_10010 PF12833 Helix-turn-helix domain CH92_10020 PF06719 AraC-type transcriptional regulator N-terminus CH92_10020 PF12833 Helix-turn-helix domain CH92_10035 PF03435 Saccharopine dehydrogenase NADP binding domain CH92_10040 PF00440 Bacterial regulatory proteins, tetR family CH92_10050 PF07690 Major Facilitator Superfamily CH92_10060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_10060 PF00672 HAMP domain CH92_10065 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CH92_10065 PF00753 Metallo-beta-lactamase superfamily CH92_10065 PF10996 Beta-Casp domain CH92_10090 PF00291 Pyridoxal-phosphate dependent enzyme CH92_10105 PF00682 HMGL-like CH92_10110 PF00368 Hydroxymethylglutaryl-coenzyme A reductase CH92_10115 PF00155 Aminotransferase class I and II CH92_10120 PF00180 Isocitrate/isopropylmalate dehydrogenase CH92_10120 PF03737 Aldolase/RraA CH92_10125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_10140 PF03737 Aldolase/RraA CH92_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10145 PF03466 LysR substrate binding domain CH92_10150 PF00171 Aldehyde dehydrogenase family CH92_10165 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_10165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_10170 PF04954 Siderophore-interacting protein CH92_10170 PF08021 Siderophore-interacting FAD-binding domain CH92_10185 PF00857 Isochorismatase family CH92_10190 PF00561 alpha/beta hydrolase fold CH92_10195 PF01494 FAD binding domain CH92_10205 PF14525 AraC-binding-like domain CH92_10205 PF12833 Helix-turn-helix domain CH92_10210 PF02525 Flavodoxin-like fold CH92_10220 PF00155 Aminotransferase class I and II CH92_10220 PF00392 Bacterial regulatory proteins, gntR family CH92_10225 PF02627 Carboxymuconolactone decarboxylase family CH92_10230 PF02798 Glutathione S-transferase, N-terminal domain CH92_10230 PF00043 Glutathione S-transferase, C-terminal domain CH92_10255 PF04209 homogentisate 1,2-dioxygenase CH92_10280 PF03062 MBOAT, membrane-bound O-acyltransferase family CH92_10290 PF17200 Single Cache domain 2 CH92_10290 PF00672 HAMP domain CH92_10290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_10295 PF02667 Short chain fatty acid transporter CH92_10300 PF02803 Thiolase, C-terminal domain CH92_10300 PF00108 Thiolase, N-terminal domain CH92_10305 PF01144 Coenzyme A transferase CH92_10310 PF01144 Coenzyme A transferase CH92_10315 PF03466 LysR substrate binding domain CH92_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10325 PF00072 Response regulator receiver domain CH92_10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_10325 PF13426 PAS domain CH92_10330 PF01614 Bacterial transcriptional regulator CH92_10330 PF09339 IclR helix-turn-helix domain CH92_10335 PF01144 Coenzyme A transferase CH92_10340 PF01144 Coenzyme A transferase CH92_10345 PF02803 Thiolase, C-terminal domain CH92_10345 PF00108 Thiolase, N-terminal domain CH92_10350 PF12146 Serine aminopeptidase, S33 CH92_10360 PF07519 Tannase and feruloyl esterase CH92_10365 PF00999 Sodium/hydrogen exchanger family CH92_10390 PF03466 LysR substrate binding domain CH92_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10405 PF03466 LysR substrate binding domain CH92_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10410 PF01042 Endoribonuclease L-PSP CH92_10415 PF00356 Bacterial regulatory proteins, lacI family CH92_10420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH92_10420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH92_10430 PF03825 Nucleoside H+ symporter CH92_10435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH92_10435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH92_10435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH92_10435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH92_10445 PF00557 Metallopeptidase family M24 CH92_10460 PF00561 alpha/beta hydrolase fold CH92_10470 PF00561 alpha/beta hydrolase fold CH92_10475 PF03466 LysR substrate binding domain CH92_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10485 PF13426 PAS domain CH92_10485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_10485 PF13493 Domain of unknown function (DUF4118) CH92_10485 PF00989 PAS fold CH92_10485 PF08447 PAS fold CH92_10485 PF00512 His Kinase A (phospho-acceptor) domain CH92_10490 PF00072 Response regulator receiver domain CH92_10490 PF00486 Transcriptional regulatory protein, C terminal CH92_10495 PF00196 Bacterial regulatory proteins, luxR family CH92_10495 PF00072 Response regulator receiver domain CH92_10500 PF03466 LysR substrate binding domain CH92_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10505 PF00561 alpha/beta hydrolase fold CH92_10510 PF05977 Transmembrane secretion effector CH92_10515 PF00857 Isochorismatase family CH92_10525 PF01965 DJ-1/PfpI family CH92_10530 PF01979 Amidohydrolase family CH92_10530 PF13382 Adenine deaminase C-terminal domain CH92_10550 PF00857 Isochorismatase family CH92_10565 PF00970 Oxidoreductase FAD-binding domain CH92_10565 PF00175 Oxidoreductase NAD-binding domain CH92_10565 PF00042 Globin CH92_10570 PF02798 Glutathione S-transferase, N-terminal domain CH92_10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10575 PF03466 LysR substrate binding domain CH92_10580 PF03466 LysR substrate binding domain CH92_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10590 PF00106 short chain dehydrogenase CH92_10600 PF02954 Bacterial regulatory protein, Fis family CH92_10600 PF00158 Sigma-54 interaction domain CH92_10600 PF13185 GAF domain CH92_10605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_10615 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_10625 PF13411 MerR HTH family regulatory protein CH92_10630 PF01144 Coenzyme A transferase CH92_10635 PF01144 Coenzyme A transferase CH92_10640 PF00682 HMGL-like CH92_10645 PF12729 Four helix bundle sensory module for signal transduction CH92_10645 PF00672 HAMP domain CH92_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_10650 PF02785 Biotin carboxylase C-terminal domain CH92_10650 PF00289 Biotin carboxylase, N-terminal domain CH92_10650 PF00364 Biotin-requiring enzyme CH92_10650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH92_10655 PF00378 Enoyl-CoA hydratase/isomerase CH92_10660 PF01039 Carboxyl transferase domain CH92_10665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_10665 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_10665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_10670 PF13193 AMP-binding enzyme C-terminal domain CH92_10670 PF00501 AMP-binding enzyme CH92_10680 PF03573 outer membrane porin, OprD family CH92_10685 PF00005 ABC transporter CH92_10685 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_10690 PF00005 ABC transporter CH92_10700 PF02653 Branched-chain amino acid transport system / permease component CH92_10705 PF02653 Branched-chain amino acid transport system / permease component CH92_10705 PF11862 Domain of unknown function (DUF3382) CH92_10710 PF00378 Enoyl-CoA hydratase/isomerase CH92_10720 PF12833 Helix-turn-helix domain CH92_10720 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CH92_10725 PF00106 short chain dehydrogenase CH92_10730 PF02803 Thiolase, C-terminal domain CH92_10730 PF00108 Thiolase, N-terminal domain CH92_10735 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_10735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_10735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_10740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_10740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_10750 PF02515 CoA-transferase family III CH92_10755 PF00501 AMP-binding enzyme CH92_10755 PF13193 AMP-binding enzyme C-terminal domain CH92_10760 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_10760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_10760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_10765 PF00378 Enoyl-CoA hydratase/isomerase CH92_10770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH92_10770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH92_10775 PF00171 Aldehyde dehydrogenase family CH92_10780 PF07536 HWE histidine kinase CH92_10780 PF08447 PAS fold CH92_10780 PF13426 PAS domain CH92_10795 PF00106 short chain dehydrogenase CH92_10800 PF00216 Bacterial DNA-binding protein CH92_10815 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH92_10815 PF00171 Aldehyde dehydrogenase family CH92_10815 PF01619 Proline dehydrogenase CH92_10815 PF14850 DNA-binding domain of Proline dehydrogenase CH92_10825 PF00150 Cellulase (glycosyl hydrolase family 5) CH92_10840 PF03851 UV-endonuclease UvdE CH92_10845 PF12462 DNA helicase IV / RNA helicase N terminal CH92_10845 PF13361 UvrD-like helicase C-terminal domain CH92_10845 PF00580 UvrD/REP helicase N-terminal domain CH92_10850 PF00043 Glutathione S-transferase, C-terminal domain CH92_10850 PF13417 Glutathione S-transferase, N-terminal domain CH92_10855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_10855 PF03466 LysR substrate binding domain CH92_10860 PF02525 Flavodoxin-like fold CH92_10865 PF00893 Small Multidrug Resistance protein CH92_10870 PF00392 Bacterial regulatory proteins, gntR family CH92_10870 PF07729 FCD domain CH92_10880 PF00528 Binding-protein-dependent transport system inner membrane component CH92_10885 PF00528 Binding-protein-dependent transport system inner membrane component CH92_10890 PF00005 ABC transporter CH92_10895 PF02146 Sir2 family CH92_10900 PF03441 FAD binding domain of DNA photolyase CH92_10900 PF00875 DNA photolyase CH92_10905 PF08349 Protein of unknown function (DUF1722) CH92_10910 PF08338 Domain of unknown function (DUF1731) CH92_10910 PF01370 NAD dependent epimerase/dehydratase family CH92_10915 PF00762 Ferrochelatase CH92_10920 PF03707 Bacterial signalling protein N terminal repeat CH92_10920 PF00990 Diguanylate cyclase, GGDEF domain CH92_10920 PF00563 EAL domain CH92_10925 PF01740 STAS domain CH92_10925 PF13426 PAS domain CH92_10930 PF13411 MerR HTH family regulatory protein CH92_10935 PF05193 Peptidase M16 inactive domain CH92_10935 PF00675 Insulinase (Peptidase family M16) CH92_10940 PF00990 Diguanylate cyclase, GGDEF domain CH92_10960 PF04239 Protein of unknown function (DUF421) CH92_10975 PF12706 Beta-lactamase superfamily domain CH92_10980 PF03070 TENA/THI-4/PQQC family CH92_10985 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CH92_10990 PF13186 Iron-sulfur cluster-binding domain CH92_10990 PF04055 Radical SAM superfamily CH92_11005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_11005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH92_11010 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH92_11015 PF03358 NADPH-dependent FMN reductase CH92_11020 PF01022 Bacterial regulatory protein, arsR family CH92_11025 PF01758 Sodium Bile acid symporter family CH92_11030 PF00072 Response regulator receiver domain CH92_11030 PF00196 Bacterial regulatory proteins, luxR family CH92_11035 PF08459 UvrC Helix-hairpin-helix N-terminal CH92_11035 PF02151 UvrB/uvrC motif CH92_11035 PF01541 GIY-YIG catalytic domain CH92_11040 PF01066 CDP-alcohol phosphatidyltransferase CH92_11090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_11100 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_11105 PF08450 SMP-30/Gluconolactonase/LRE-like region CH92_11110 PF01370 NAD dependent epimerase/dehydratase family CH92_11115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH92_11115 PF13378 Enolase C-terminal domain-like CH92_11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_11120 PF03466 LysR substrate binding domain CH92_11125 PF13378 Enolase C-terminal domain-like CH92_11125 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH92_11130 PF01970 Tripartite tricarboxylate transporter TctA family CH92_11140 PF03401 Tripartite tricarboxylate transporter family receptor CH92_11145 PF13378 Enolase C-terminal domain-like CH92_11145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH92_11150 PF00701 Dihydrodipicolinate synthetase family CH92_11155 PF00171 Aldehyde dehydrogenase family CH92_11160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH92_11160 PF13378 Enolase C-terminal domain-like CH92_11165 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH92_11165 PF08666 SAF domain CH92_11170 PF01565 FAD binding domain CH92_11170 PF02913 FAD linked oxidases, C-terminal domain CH92_11175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_11175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_11185 PF01565 FAD binding domain CH92_11185 PF08031 Berberine and berberine like CH92_11190 PF03573 outer membrane porin, OprD family CH92_11195 PF13307 Helicase C-terminal domain CH92_11200 PF08774 VRR-NUC domain CH92_11200 PF18081 Fanconi anemia-associated nuclease SAP domain CH92_11205 PF06969 HemN C-terminal domain CH92_11205 PF04055 Radical SAM superfamily CH92_11210 PF00672 HAMP domain CH92_11210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_11215 PF00483 Nucleotidyl transferase CH92_11220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_11225 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_11225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH92_11230 PF04314 Copper chaperone PCu(A)C CH92_11235 PF02656 Domain of unknown function (DUF202) CH92_11240 PF02656 Domain of unknown function (DUF202) CH92_11245 PF01212 Beta-eliminating lyase CH92_11250 PF00248 Aldo/keto reductase family CH92_11265 PF04632 Fusaric acid resistance protein family CH92_11270 PF07869 Protein of unknown function (DUF1656) CH92_11275 PF13533 Biotin-lipoyl like CH92_11280 PF02321 Outer membrane efflux protein CH92_11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_11285 PF03466 LysR substrate binding domain CH92_11295 PF04679 ATP dependent DNA ligase C terminal region CH92_11295 PF01068 ATP dependent DNA ligase domain CH92_11295 PF13298 DNA polymerase Ligase (LigD) CH92_11310 PF05974 Domain of unknown function (DUF892) CH92_11315 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH92_11315 PF12795 Mechanosensitive ion channel porin domain CH92_11315 PF00924 Mechanosensitive ion channel CH92_11325 PF08323 Starch synthase catalytic domain CH92_11325 PF00534 Glycosyl transferases group 1 CH92_11330 PF00128 Alpha amylase, catalytic domain CH92_11330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH92_11330 PF11941 Domain of unknown function (DUF3459) CH92_11335 PF02446 4-alpha-glucanotransferase CH92_11340 PF00128 Alpha amylase, catalytic domain CH92_11350 PF00128 Alpha amylase, catalytic domain CH92_11350 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH92_11355 PF01551 Peptidase family M23 CH92_11355 PF08460 Bacterial SH3 domain CH92_11365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH92_11370 PF03466 LysR substrate binding domain CH92_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_11375 PF13823 Alcohol dehydrogenase GroES-associated CH92_11375 PF08240 Alcohol dehydrogenase GroES-like domain CH92_11375 PF00107 Zinc-binding dehydrogenase CH92_11385 PF03372 Endonuclease/Exonuclease/phosphatase family CH92_11390 PF13091 PLD-like domain CH92_11395 PF03706 Lysylphosphatidylglycerol synthase TM region CH92_11400 PF02806 Alpha amylase, C-terminal all-beta domain CH92_11400 PF00128 Alpha amylase, catalytic domain CH92_11400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH92_11405 PF00128 Alpha amylase, catalytic domain CH92_11405 PF16657 Maltogenic Amylase, C-terminal domain CH92_11410 PF11896 Domain of unknown function (DUF3416) CH92_11410 PF00128 Alpha amylase, catalytic domain CH92_11420 PF04216 Protein involved in formate dehydrogenase formation CH92_11425 PF01292 Prokaryotic cytochrome b561 CH92_11430 PF12800 4Fe-4S binding domain CH92_11430 PF13247 4Fe-4S dicluster domain CH92_11430 PF09163 Formate dehydrogenase N, transmembrane CH92_11435 PF00384 Molybdopterin oxidoreductase CH92_11435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_11435 PF01568 Molydopterin dinucleotide binding domain CH92_11440 PF01568 Molydopterin dinucleotide binding domain CH92_11440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_11440 PF00384 Molybdopterin oxidoreductase CH92_11445 PF13298 DNA polymerase Ligase (LigD) CH92_11445 PF04679 ATP dependent DNA ligase C terminal region CH92_11445 PF01068 ATP dependent DNA ligase domain CH92_11450 PF02735 Ku70/Ku80 beta-barrel domain CH92_11460 PF00107 Zinc-binding dehydrogenase CH92_11460 PF08240 Alcohol dehydrogenase GroES-like domain CH92_11465 PF03466 LysR substrate binding domain CH92_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_11470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH92_11475 PF00873 AcrB/AcrD/AcrF family CH92_11480 PF02321 Outer membrane efflux protein CH92_11485 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_11490 PF02321 Outer membrane efflux protein CH92_11495 PF00873 AcrB/AcrD/AcrF family CH92_11505 PF00873 AcrB/AcrD/AcrF family CH92_11510 PF13533 Biotin-lipoyl like CH92_11515 PF03023 Lipid II flippase MurJ CH92_11520 PF09722 Protein of unknown function (DUF2384) CH92_11530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_11530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CH92_11535 PF03450 CO dehydrogenase flavoprotein C-terminal domain CH92_11535 PF00941 FAD binding domain in molybdopterin dehydrogenase CH92_11540 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_11540 PF01799 [2Fe-2S] binding domain CH92_11545 PF13193 AMP-binding enzyme C-terminal domain CH92_11545 PF00501 AMP-binding enzyme CH92_11550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_11550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_11550 PF00378 Enoyl-CoA hydratase/isomerase CH92_11565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_11570 PF16868 NMT1-like family CH92_11585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_11595 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_11600 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH92_11605 PF00171 Aldehyde dehydrogenase family CH92_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_11610 PF03466 LysR substrate binding domain CH92_11615 PF02441 Flavoprotein CH92_11640 PF00593 TonB dependent receptor CH92_11640 PF07715 TonB-dependent Receptor Plug Domain CH92_11650 PF13185 GAF domain CH92_11650 PF00990 Diguanylate cyclase, GGDEF domain CH92_11655 PF05860 haemagglutination activity domain CH92_11665 PF07715 TonB-dependent Receptor Plug Domain CH92_11665 PF00593 TonB dependent receptor CH92_11670 PF09308 LuxQ, periplasmic CH92_11670 PF00072 Response regulator receiver domain CH92_11670 PF00512 His Kinase A (phospho-acceptor) domain CH92_11670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_11675 PF00072 Response regulator receiver domain CH92_11690 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH92_11700 PF12833 Helix-turn-helix domain CH92_11710 PF13188 PAS domain CH92_11710 PF08448 PAS fold CH92_11710 PF00512 His Kinase A (phospho-acceptor) domain CH92_11710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_11710 PF00072 Response regulator receiver domain CH92_11735 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH92_11735 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH92_11750 PF00528 Binding-protein-dependent transport system inner membrane component CH92_11755 PF00528 Binding-protein-dependent transport system inner membrane component CH92_11760 PF00005 ABC transporter CH92_11760 PF08402 TOBE domain CH92_11765 PF00005 ABC transporter CH92_11765 PF17912 MalK OB fold domain CH92_11770 PF01590 GAF domain CH92_11770 PF00158 Sigma-54 interaction domain CH92_11770 PF02954 Bacterial regulatory protein, Fis family CH92_11775 PF01406 tRNA synthetases class I (C) catalytic domain CH92_11775 PF09190 DALR domain CH92_11780 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH92_11780 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH92_11785 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH92_11790 PF12850 Calcineurin-like phosphoesterase superfamily domain CH92_11795 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CH92_11815 PF06434 Aconitate hydratase 2 N-terminus CH92_11815 PF00330 Aconitase family (aconitate hydratase) CH92_11815 PF11791 Aconitate B N-terminal domain CH92_11820 PF12848 ABC transporter CH92_11820 PF00005 ABC transporter CH92_11825 PF02525 Flavodoxin-like fold CH92_11835 PF00313 'Cold-shock' DNA-binding domain CH92_11840 PF02673 Bacitracin resistance protein BacA CH92_11845 PF00672 HAMP domain CH92_11845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_11845 PF17200 Single Cache domain 2 CH92_11865 PF04239 Protein of unknown function (DUF421) CH92_11880 PF00990 Diguanylate cyclase, GGDEF domain CH92_11880 PF05230 MASE2 domain CH92_11885 PF00072 Response regulator receiver domain CH92_11885 PF00486 Transcriptional regulatory protein, C terminal CH92_11890 PF01106 NifU-like domain CH92_11890 PF01521 Iron-sulphur cluster biosynthesis CH92_11895 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH92_11895 PF00809 Pterin binding enzyme CH92_11895 PF02310 B12 binding domain CH92_11895 PF02607 B12 binding domain CH92_11895 PF02574 Homocysteine S-methyltransferase CH92_11910 PF00892 EamA-like transporter family CH92_11925 PF07690 Major Facilitator Superfamily CH92_11930 PF04055 Radical SAM superfamily CH92_11935 PF00069 Protein kinase domain CH92_11935 PF03793 PASTA domain CH92_11950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH92_11950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH92_11965 PF08240 Alcohol dehydrogenase GroES-like domain CH92_11965 PF00107 Zinc-binding dehydrogenase CH92_11970 PF01343 Peptidase family S49 CH92_11970 PF08496 Peptidase family S49 N-terminal CH92_12010 PF01925 Sulfite exporter TauE/SafE CH92_12015 PF00293 NUDIX domain CH92_12015 PF09297 NADH pyrophosphatase zinc ribbon domain CH92_12015 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CH92_12025 PF00378 Enoyl-CoA hydratase/isomerase CH92_12030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH92_12030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH92_12030 PF01276 Orn/Lys/Arg decarboxylase, major domain CH92_12035 PF00929 Exonuclease CH92_12040 PF00075 RNase H CH92_12050 PF00753 Metallo-beta-lactamase superfamily CH92_12050 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH92_12055 PF01476 LysM domain CH92_12055 PF01464 Transglycosylase SLT domain CH92_12065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH92_12070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH92_12075 PF00528 Binding-protein-dependent transport system inner membrane component CH92_12080 PF12911 N-terminal TM domain of oligopeptide transport permease C CH92_12080 PF00528 Binding-protein-dependent transport system inner membrane component CH92_12085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH92_12085 PF00005 ABC transporter CH92_12095 PF09312 SurA N-terminal domain CH92_12095 PF00639 PPIC-type PPIASE domain CH92_12100 PF00216 Bacterial DNA-binding protein CH92_12105 PF05362 Lon protease (S16) C-terminal proteolytic domain CH92_12105 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH92_12105 PF00004 ATPase family associated with various cellular activities (AAA) CH92_12110 PF10431 C-terminal, D2-small domain, of ClpB protein CH92_12110 PF06689 ClpX C4-type zinc finger CH92_12110 PF07724 AAA domain (Cdc48 subfamily) CH92_12115 PF00574 Clp protease CH92_12120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH92_12120 PF05698 Bacterial trigger factor protein (TF) C-terminus CH92_12120 PF05697 Bacterial trigger factor protein (TF) CH92_12125 PF07681 DoxX CH92_12135 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_12145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_12155 PF08534 Redoxin CH92_12160 PF01235 Sodium:alanine symporter family CH92_12165 PF04357 TamB, inner membrane protein subunit of TAM complex CH92_12170 PF01103 Surface antigen CH92_12170 PF17243 POTRA domain TamA domain 1 CH92_12170 PF07244 Surface antigen variable number repeat CH92_12180 PF03372 Endonuclease/Exonuclease/phosphatase family CH92_12185 PF12849 PBP superfamily domain CH92_12190 PF00294 pfkB family carbohydrate kinase CH92_12205 PF00528 Binding-protein-dependent transport system inner membrane component CH92_12210 PF00528 Binding-protein-dependent transport system inner membrane component CH92_12215 PF17912 MalK OB fold domain CH92_12215 PF00005 ABC transporter CH92_12220 PF01232 Mannitol dehydrogenase Rossmann domain CH92_12220 PF08125 Mannitol dehydrogenase C-terminal domain CH92_12225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH92_12225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH92_12230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_12230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_12230 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_12235 PF03466 LysR substrate binding domain CH92_12235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_12240 PF00356 Bacterial regulatory proteins, lacI family CH92_12245 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_12250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_12265 PF03969 AFG1-like ATPase CH92_12280 PF03553 Na+/H+ antiporter family CH92_12280 PF13726 Na+-H+ antiporter family CH92_12285 PF01242 6-pyruvoyl tetrahydropterin synthase CH92_12325 PF01979 Amidohydrolase family CH92_12335 PF13419 Haloacid dehalogenase-like hydrolase CH92_12340 PF00106 short chain dehydrogenase CH92_12345 PF00072 Response regulator receiver domain CH92_12345 PF00990 Diguanylate cyclase, GGDEF domain CH92_12355 PF13333 Integrase core domain CH92_12355 PF00665 Integrase core domain CH92_12355 PF13276 HTH-like domain CH92_12360 PF01479 S4 domain CH92_12360 PF00849 RNA pseudouridylate synthase CH92_12365 PF01081 KDPG and KHG aldolase CH92_12370 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH92_12375 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH92_12375 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH92_12380 PF01380 SIS domain CH92_12380 PF01418 Helix-turn-helix domain, rpiR family CH92_12390 PF02264 LamB porin CH92_12395 PF03459 TOBE domain CH92_12395 PF17912 MalK OB fold domain CH92_12395 PF00005 ABC transporter CH92_12410 PF01547 Bacterial extracellular solute-binding protein CH92_12420 PF00512 His Kinase A (phospho-acceptor) domain CH92_12420 PF00672 HAMP domain CH92_12420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_12425 PF00486 Transcriptional regulatory protein, C terminal CH92_12425 PF00072 Response regulator receiver domain CH92_12430 PF02685 Glucokinase CH92_12435 PF00920 Dehydratase family CH92_12440 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_12440 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH92_12445 PF02142 MGS-like domain CH92_12450 PF04079 Segregation and condensation complex subunit ScpB CH92_12455 PF02616 Segregation and condensation protein ScpA CH92_12460 PF00579 tRNA synthetases class I (W and Y) CH92_12465 PF01300 Telomere recombination CH92_12470 PF02811 PHP domain CH92_12475 PF04279 Intracellular septation protein A CH92_12480 PF03795 YCII-related domain CH92_12490 PF00486 Transcriptional regulatory protein, C terminal CH92_12490 PF00072 Response regulator receiver domain CH92_12500 PF16750 Sensor domain of 2-component histidine kinase CH92_12500 PF00512 His Kinase A (phospho-acceptor) domain CH92_12500 PF00672 HAMP domain CH92_12500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_12505 PF00881 Nitroreductase family CH92_12510 PF02386 Cation transport protein CH92_12515 PF14437 MafB19-like deaminase CH92_12520 PF05661 Protein of unknown function (DUF808) CH92_12530 PF00211 Adenylate and Guanylate cyclase catalytic domain CH92_12535 PF12852 Cupin CH92_12535 PF12833 Helix-turn-helix domain CH92_12545 PF00920 Dehydratase family CH92_12550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_12555 PF03466 LysR substrate binding domain CH92_12560 PF00171 Aldehyde dehydrogenase family CH92_12570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_12570 PF03466 LysR substrate binding domain CH92_12580 PF01734 Patatin-like phospholipase CH92_12590 PF01047 MarR family CH92_12595 PF00570 HRDC domain CH92_12595 PF00270 DEAD/DEAH box helicase CH92_12595 PF16124 RecQ zinc-binding CH92_12595 PF09382 RQC domain CH92_12595 PF00271 Helicase conserved C-terminal domain CH92_12605 PF04304 Protein of unknown function (DUF454) CH92_12620 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH92_12635 PF00291 Pyridoxal-phosphate dependent enzyme CH92_12665 PF13230 Glutamine amidotransferases class-II CH92_12675 PF00582 Universal stress protein family CH92_12690 PF01464 Transglycosylase SLT domain CH92_12690 PF14718 Soluble lytic murein transglycosylase L domain CH92_12695 PF03476 MOSC N-terminal beta barrel domain CH92_12695 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_12695 PF03473 MOSC domain CH92_12705 PF00781 Diacylglycerol kinase catalytic domain CH92_12710 PF02397 Bacterial sugar transferase CH92_12715 PF01451 Low molecular weight phosphotyrosine protein phosphatase CH92_12720 PF13614 AAA domain CH92_12720 PF13807 G-rich domain on putative tyrosine kinase CH92_12720 PF02706 Chain length determinant protein CH92_12745 PF16363 GDP-mannose 4,6 dehydratase CH92_12755 PF16363 GDP-mannose 4,6 dehydratase CH92_12760 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CH92_12760 PF02563 Polysaccharide biosynthesis/export protein CH92_12760 PF10531 SLBB domain CH92_12770 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_12780 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_12785 PF01494 FAD binding domain CH92_12790 PF12833 Helix-turn-helix domain CH92_12790 PF02311 AraC-like ligand binding domain CH92_12825 PF04002 RadC-like JAB domain CH92_12835 PF13438 Domain of unknown function (DUF4113) CH92_12835 PF00817 impB/mucB/samB family CH92_12835 PF11799 impB/mucB/samB family C-terminal domain CH92_12860 PF00270 DEAD/DEAH box helicase CH92_12860 PF08494 DEAD/H associated CH92_12860 PF00271 Helicase conserved C-terminal domain CH92_12885 PF00069 Protein kinase domain CH92_12900 PF00216 Bacterial DNA-binding protein CH92_12905 PF01588 Putative tRNA binding domain CH92_12905 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH92_12905 PF03147 Ferredoxin-fold anticodon binding domain CH92_12905 PF03484 tRNA synthetase B5 domain CH92_12905 PF03483 B3/4 domain CH92_12910 PF01409 tRNA synthetases class II core domain (F) CH92_12910 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH92_12915 PF00453 Ribosomal protein L20 CH92_12920 PF01632 Ribosomal protein L35 CH92_12925 PF05198 Translation initiation factor IF-3, N-terminal domain CH92_12925 PF00707 Translation initiation factor IF-3, C-terminal domain CH92_12930 PF03129 Anticodon binding domain CH92_12930 PF02824 TGS domain CH92_12930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH92_12930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH92_12940 PF01266 FAD dependent oxidoreductase CH92_12965 PF03453 MoeA N-terminal region (domain I and II) CH92_12965 PF00994 Probable molybdopterin binding domain CH92_12965 PF03454 MoeA C-terminal region (domain IV) CH92_12970 PF00994 Probable molybdopterin binding domain CH92_12975 PF12804 MobA-like NTP transferase domain CH92_12995 PF03573 outer membrane porin, OprD family CH92_13015 PF01966 HD domain CH92_13025 PF04320 Protein with unknown function (DUF469) CH92_13030 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH92_13035 PF10672 S-adenosylmethionine-dependent methyltransferase CH92_13035 PF02926 THUMP domain CH92_13035 PF01170 Putative RNA methylase family UPF0020 CH92_13040 PF04957 Ribosome modulation factor CH92_13045 PF01180 Dihydroorotate dehydrogenase CH92_13060 PF05088 Bacterial NAD-glutamate dehydrogenase CH92_13065 PF17863 AAA lid domain CH92_13065 PF07726 ATPase family associated with various cellular activities (AAA) CH92_13070 PF01882 Protein of unknown function DUF58 CH92_13100 PF03861 ANTAR domain CH92_13100 PF08376 Nitrate and nitrite sensing CH92_13105 PF00005 ABC transporter CH92_13110 PF00528 Binding-protein-dependent transport system inner membrane component CH92_13115 PF00005 ABC transporter CH92_13120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_13120 PF13426 PAS domain CH92_13120 PF08447 PAS fold CH92_13135 PF07690 Major Facilitator Superfamily CH92_13140 PF03793 PASTA domain CH92_13140 PF00069 Protein kinase domain CH92_13150 PF04324 BFD-like [2Fe-2S] binding domain CH92_13150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH92_13150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH92_13150 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_13150 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH92_13155 PF00355 Rieske [2Fe-2S] domain CH92_13160 PF00384 Molybdopterin oxidoreductase CH92_13160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_13160 PF01568 Molydopterin dinucleotide binding domain CH92_13160 PF04324 BFD-like [2Fe-2S] binding domain CH92_13165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH92_13170 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH92_13175 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH92_13180 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH92_13180 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH92_13190 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH92_13190 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH92_13195 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_13195 PF00384 Molybdopterin oxidoreductase CH92_13195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_13200 PF00146 NADH dehydrogenase CH92_13205 PF12838 4Fe-4S dicluster domain CH92_13210 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH92_13215 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH92_13220 PF00361 Proton-conducting membrane transporter CH92_13220 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH92_13225 PF00361 Proton-conducting membrane transporter CH92_13230 PF00361 Proton-conducting membrane transporter CH92_13240 PF14870 Photosynthesis system II assembly factor YCF48 CH92_13245 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH92_13245 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH92_13245 PF01433 Peptidase family M1 domain CH92_13260 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH92_13260 PF01694 Rhomboid family CH92_13265 PF00149 Calcineurin-like phosphoesterase CH92_13270 PF01513 ATP-NAD kinase CH92_13305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_13305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_13315 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CH92_13315 PF12833 Helix-turn-helix domain CH92_13330 PF02322 Cytochrome bd terminal oxidase subunit II CH92_13335 PF01654 Cytochrome bd terminal oxidase subunit I CH92_13345 PF11356 Type II secretion system protein C CH92_13350 PF03958 Bacterial type II/III secretion system short domain CH92_13350 PF00263 Bacterial type II and III secretion system protein CH92_13355 PF01053 Cys/Met metabolism PLP-dependent enzyme CH92_13360 PF00156 Phosphoribosyl transferase domain CH92_13365 PF02674 Colicin V production protein CH92_13370 PF05036 Sporulation related domain CH92_13375 PF02875 Mur ligase family, glutamate ligase domain CH92_13375 PF08245 Mur ligase middle domain CH92_13380 PF17848 Acetyl-coA carboxylase zinc finger domain CH92_13380 PF01039 Carboxyl transferase domain CH92_13385 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH92_13390 PF01416 tRNA pseudouridine synthase CH92_13400 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH92_13400 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH92_13405 PF00180 Isocitrate/isopropylmalate dehydrogenase CH92_13415 PF00694 Aconitase C-terminal domain CH92_13420 PF00330 Aconitase family (aconitate hydratase) CH92_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_13435 PF00990 Diguanylate cyclase, GGDEF domain CH92_13435 PF03707 Bacterial signalling protein N terminal repeat CH92_13435 PF00563 EAL domain CH92_13440 PF00011 Hsp20/alpha crystallin family CH92_13450 PF01207 Dihydrouridine synthase (Dus) CH92_13480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH92_13490 PF00535 Glycosyl transferase family 2 CH92_13495 PF02706 Chain length determinant protein CH92_13495 PF13807 G-rich domain on putative tyrosine kinase CH92_13495 PF13614 AAA domain CH92_13510 PF13439 Glycosyltransferase Family 4 CH92_13510 PF00534 Glycosyl transferases group 1 CH92_13525 PF00534 Glycosyl transferases group 1 CH92_13525 PF13439 Glycosyltransferase Family 4 CH92_13530 PF13439 Glycosyltransferase Family 4 CH92_13530 PF00534 Glycosyl transferases group 1 CH92_13550 PF01757 Acyltransferase family CH92_13555 PF00072 Response regulator receiver domain CH92_13555 PF00486 Transcriptional regulatory protein, C terminal CH92_13560 PF06745 KaiC CH92_13565 PF00072 Response regulator receiver domain CH92_13565 PF00990 Diguanylate cyclase, GGDEF domain CH92_13570 PF00919 Uncharacterized protein family UPF0004 CH92_13570 PF18693 TRAM domain CH92_13570 PF04055 Radical SAM superfamily CH92_13580 PF08362 YcdC-like protein, C-terminal region CH92_13580 PF00440 Bacterial regulatory proteins, tetR family CH92_13590 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CH92_13590 PF03171 2OG-Fe(II) oxygenase superfamily CH92_13605 PF00005 ABC transporter CH92_13610 PF00528 Binding-protein-dependent transport system inner membrane component CH92_13620 PF00106 short chain dehydrogenase CH92_13645 PF00106 short chain dehydrogenase CH92_13655 PF01699 Sodium/calcium exchanger protein CH92_13660 PF02608 ABC transporter substrate-binding protein PnrA-like CH92_13665 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CH92_13665 PF03171 2OG-Fe(II) oxygenase superfamily CH92_13670 PF05199 GMC oxidoreductase CH92_13670 PF00732 GMC oxidoreductase CH92_13675 PF00171 Aldehyde dehydrogenase family CH92_13680 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_13685 PF18389 TrmO C-terminal domain CH92_13685 PF01980 tRNA-methyltransferase O CH92_13690 PF01804 Penicillin amidase CH92_13700 PF01043 SecA preprotein cross-linking domain CH92_13700 PF07516 SecA Wing and Scaffold domain CH92_13700 PF07517 SecA DEAD-like domain CH92_13700 PF02810 SEC-C motif CH92_13710 PF01048 Phosphorylase superfamily CH92_13715 PF00933 Glycosyl hydrolase family 3 N terminal domain CH92_13725 PF00440 Bacterial regulatory proteins, tetR family CH92_13730 PF00717 Peptidase S24-like CH92_13730 PF01726 LexA DNA binding domain CH92_13735 PF03846 Cell division inhibitor SulA CH92_13745 PF00892 EamA-like transporter family CH92_13755 PF01396 Topoisomerase DNA binding C4 zinc finger CH92_13755 PF01751 Toprim domain CH92_13755 PF01131 DNA topoisomerase CH92_13755 PF08272 Topoisomerase I zinc-ribbon-like CH92_13765 PF00108 Thiolase, N-terminal domain CH92_13765 PF02803 Thiolase, C-terminal domain CH92_13770 PF00378 Enoyl-CoA hydratase/isomerase CH92_13770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_13770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_13775 PF00326 Prolyl oligopeptidase family CH92_13775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH92_13785 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH92_13795 PF00202 Aminotransferase class-III CH92_13805 PF11871 Domain of unknown function (DUF3391) CH92_13805 PF01966 HD domain CH92_13820 PF00581 Rhodanese-like domain CH92_13825 PF00924 Mechanosensitive ion channel CH92_13830 PF13193 AMP-binding enzyme C-terminal domain CH92_13830 PF00501 AMP-binding enzyme CH92_13830 PF16177 Acetyl-coenzyme A synthetase N-terminus CH92_13835 PF10011 Predicted membrane protein (DUF2254) CH92_13840 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_13845 PF03466 LysR substrate binding domain CH92_13845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_13850 PF02515 CoA-transferase family III CH92_13855 PF00682 HMGL-like CH92_13860 PF08780 Nucleotidyltransferase substrate binding protein like CH92_13870 PF02719 Polysaccharide biosynthesis protein CH92_13875 PF00953 Glycosyl transferase family 4 CH92_13880 PF01370 NAD dependent epimerase/dehydratase family CH92_13890 PF13439 Glycosyltransferase Family 4 CH92_13900 PF04101 Glycosyltransferase family 28 C-terminal domain CH92_13900 PF03033 Glycosyltransferase family 28 N-terminal domain CH92_13910 PF01757 Acyltransferase family CH92_13915 PF00535 Glycosyl transferase family 2 CH92_13920 PF00535 Glycosyl transferase family 2 CH92_13925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH92_13925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH92_13925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH92_13930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH92_13930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH92_13930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH92_13935 PF02350 UDP-N-acetylglucosamine 2-epimerase CH92_13940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CH92_13940 PF00753 Metallo-beta-lactamase superfamily CH92_13940 PF10996 Beta-Casp domain CH92_13945 PF00216 Bacterial DNA-binding protein CH92_13950 PF00271 Helicase conserved C-terminal domain CH92_13950 PF03880 DbpA RNA binding domain CH92_13950 PF00270 DEAD/DEAH box helicase CH92_13960 PF01474 Class-II DAHP synthetase family CH92_13965 PF00939 Sodium:sulfate symporter transmembrane region CH92_13970 PF01132 Elongation factor P (EF-P) OB domain CH92_13970 PF09285 Elongation factor P, C-terminal CH92_13970 PF08207 Elongation factor P (EF-P) KOW-like domain CH92_13985 PF01593 Flavin containing amine oxidoreductase CH92_13990 PF02535 ZIP Zinc transporter CH92_14010 PF00043 Glutathione S-transferase, C-terminal domain CH92_14010 PF13417 Glutathione S-transferase, N-terminal domain CH92_14020 PF00255 Glutathione peroxidase CH92_14025 PF01641 SelR domain CH92_14030 PF00155 Aminotransferase class I and II CH92_14040 PF01435 Peptidase family M48 CH92_14045 PF05724 Thiopurine S-methyltransferase (TPMT) CH92_14050 PF02954 Bacterial regulatory protein, Fis family CH92_14050 PF00158 Sigma-54 interaction domain CH92_14050 PF00072 Response regulator receiver domain CH92_14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14055 PF00512 His Kinase A (phospho-acceptor) domain CH92_14055 PF00989 PAS fold CH92_14060 PF00158 Sigma-54 interaction domain CH92_14060 PF02954 Bacterial regulatory protein, Fis family CH92_14060 PF00072 Response regulator receiver domain CH92_14075 PF03918 Cytochrome C biogenesis protein CH92_14080 PF08534 Redoxin CH92_14085 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH92_14085 PF01578 Cytochrome C assembly protein CH92_14090 PF03100 CcmE CH92_14095 PF04995 Heme exporter protein D (CcmD) CH92_14100 PF01578 Cytochrome C assembly protein CH92_14110 PF03379 CcmB protein CH92_14115 PF00005 ABC transporter CH92_14125 PF01312 FlhB HrpN YscU SpaS Family CH92_14140 PF01584 CheW-like domain CH92_14150 PF13614 AAA domain CH92_14155 PF00691 OmpA family CH92_14155 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH92_14160 PF01618 MotA/TolQ/ExbB proton channel family CH92_14165 PF01339 CheB methylesterase CH92_14165 PF00072 Response regulator receiver domain CH92_14170 PF07194 P2 response regulator binding domain CH92_14170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14170 PF01584 CheW-like domain CH92_14170 PF02895 Signal transducing histidine kinase, homodimeric domain CH92_14170 PF01627 Hpt domain CH92_14175 PF04344 Chemotaxis phosphatase, CheZ CH92_14180 PF00072 Response regulator receiver domain CH92_14185 PF04545 Sigma-70, region 4 CH92_14185 PF04542 Sigma-70 region 2 CH92_14185 PF04539 Sigma-70 region 3 CH92_14190 PF10609 NUBPL iron-transfer P-loop NTPase CH92_14200 PF00448 SRP54-type protein, GTPase domain CH92_14205 PF00771 FHIPEP family CH92_14210 PF00080 Copper/zinc superoxide dismutase (SODC) CH92_14215 PF01312 FlhB HrpN YscU SpaS Family CH92_14220 PF01311 Bacterial export proteins, family 1 CH92_14225 PF01313 Bacterial export proteins, family 3 CH92_14230 PF00813 FliP family CH92_14235 PF04347 Flagellar biosynthesis protein, FliO CH92_14240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH92_14245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH92_14245 PF02154 Flagellar motor switch protein FliM CH92_14250 PF03748 Flagellar basal body-associated protein FliL CH92_14265 PF00072 Response regulator receiver domain CH92_14265 PF00486 Transcriptional regulatory protein, C terminal CH92_14270 PF13466 STAS domain CH92_14280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH92_14280 PF18269 T3SS EscN ATPase C-terminal domain CH92_14290 PF14841 FliG middle domain CH92_14290 PF14842 FliG N-terminal domain CH92_14290 PF01706 FliG C-terminal domain CH92_14295 PF01514 Secretory protein of YscJ/FliF family CH92_14295 PF08345 Flagellar M-ring protein C-terminal CH92_14300 PF02049 Flagellar hook-basal body complex protein FliE CH92_14305 PF03594 Benzoate membrane transport protein CH92_14315 PF16884 N-terminal domain of oxidoreductase CH92_14315 PF00107 Zinc-binding dehydrogenase CH92_14320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH92_14330 PF00563 EAL domain CH92_14330 PF00990 Diguanylate cyclase, GGDEF domain CH92_14330 PF13188 PAS domain CH92_14330 PF03707 Bacterial signalling protein N terminal repeat CH92_14340 PF00155 Aminotransferase class I and II CH92_14340 PF00392 Bacterial regulatory proteins, gntR family CH92_14360 PF00766 Electron transfer flavoprotein FAD-binding domain CH92_14360 PF01012 Electron transfer flavoprotein domain CH92_14365 PF01012 Electron transfer flavoprotein domain CH92_14375 PF00313 'Cold-shock' DNA-binding domain CH92_14395 PF01553 Acyltransferase CH92_14415 PF03006 Haemolysin-III related CH92_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14430 PF00512 His Kinase A (phospho-acceptor) domain CH92_14430 PF00672 HAMP domain CH92_14435 PF00072 Response regulator receiver domain CH92_14435 PF00486 Transcriptional regulatory protein, C terminal CH92_14440 PF00403 Heavy-metal-associated domain CH92_14450 PF00394 Multicopper oxidase CH92_14450 PF07731 Multicopper oxidase CH92_14450 PF07732 Multicopper oxidase CH92_14460 PF05275 Copper resistance protein B precursor (CopB) CH92_14470 PF00535 Glycosyl transferase family 2 CH92_14475 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH92_14480 PF14310 Fibronectin type III-like domain CH92_14480 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH92_14480 PF00933 Glycosyl hydrolase family 3 N terminal domain CH92_14500 PF04679 ATP dependent DNA ligase C terminal region CH92_14500 PF01068 ATP dependent DNA ligase domain CH92_14500 PF04675 DNA ligase N terminus CH92_14505 PF00270 DEAD/DEAH box helicase CH92_14505 PF08494 DEAD/H associated CH92_14505 PF00271 Helicase conserved C-terminal domain CH92_14520 PF00156 Phosphoribosyl transferase domain CH92_14520 PF05139 Erythromycin esterase CH92_14525 PF01738 Dienelactone hydrolase family CH92_14525 PF00156 Phosphoribosyl transferase domain CH92_14540 PF03819 MazG nucleotide pyrophosphohydrolase domain CH92_14545 PF13291 ACT domain CH92_14545 PF04607 Region found in RelA / SpoT proteins CH92_14545 PF02824 TGS domain CH92_14550 PF05958 tRNA (Uracil-5-)-methyltransferase CH92_14555 PF00291 Pyridoxal-phosphate dependent enzyme CH92_14565 PF00672 HAMP domain CH92_14565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_14565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14565 PF00512 His Kinase A (phospho-acceptor) domain CH92_14565 PF01627 Hpt domain CH92_14565 PF00072 Response regulator receiver domain CH92_14570 PF03458 UPF0126 domain CH92_14585 PF00512 His Kinase A (phospho-acceptor) domain CH92_14585 PF00672 HAMP domain CH92_14585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14590 PF00072 Response regulator receiver domain CH92_14590 PF00486 Transcriptional regulatory protein, C terminal CH92_14595 PF02867 Ribonucleotide reductase, barrel domain CH92_14595 PF03477 ATP cone domain CH92_14595 PF00317 Ribonucleotide reductase, all-alpha domain CH92_14600 PF00268 Ribonucleotide reductase, small chain CH92_14640 PF00440 Bacterial regulatory proteins, tetR family CH92_14650 PF00892 EamA-like transporter family CH92_14655 PF03466 LysR substrate binding domain CH92_14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_14660 PF02525 Flavodoxin-like fold CH92_14680 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_14685 PF00141 Peroxidase CH92_14690 PF13649 Methyltransferase domain CH92_14715 PF01638 HxlR-like helix-turn-helix CH92_14730 PF00990 Diguanylate cyclase, GGDEF domain CH92_14730 PF03707 Bacterial signalling protein N terminal repeat CH92_14730 PF00563 EAL domain CH92_14730 PF13188 PAS domain CH92_14750 PF16591 Helical bimodular sensor domain CH92_14750 PF00672 HAMP domain CH92_14750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_14760 PF04346 Ethanolamine utilisation protein, EutH CH92_14765 PF00072 Response regulator receiver domain CH92_14765 PF00196 Bacterial regulatory proteins, luxR family CH92_14775 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_14815 PF00486 Transcriptional regulatory protein, C terminal CH92_14815 PF00072 Response regulator receiver domain CH92_14820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_14820 PF16750 Sensor domain of 2-component histidine kinase CH92_14820 PF00512 His Kinase A (phospho-acceptor) domain CH92_14820 PF00672 HAMP domain CH92_14825 PF07715 TonB-dependent Receptor Plug Domain CH92_14825 PF00593 TonB dependent receptor CH92_14845 PF06165 Glycosyltransferase family 36 CH92_14845 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH92_14845 PF10091 Putative glucoamylase CH92_14855 PF07715 TonB-dependent Receptor Plug Domain CH92_14855 PF00593 TonB dependent receptor CH92_14860 PF01136 Peptidase family U32 CH92_14860 PF12392 Collagenase CH92_14880 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_14885 PF07715 TonB-dependent Receptor Plug Domain CH92_14890 PF03330 Lytic transglycolase CH92_14895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_14895 PF13426 PAS domain CH92_14895 PF08447 PAS fold CH92_14905 PF07690 Major Facilitator Superfamily CH92_14930 PF01047 MarR family CH92_14935 PF02321 Outer membrane efflux protein CH92_14940 PF00529 HlyD membrane-fusion protein of T1SS CH92_14940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH92_14945 PF07690 Major Facilitator Superfamily CH92_14950 PF00270 DEAD/DEAH box helicase CH92_14950 PF00271 Helicase conserved C-terminal domain CH92_14950 PF17191 RecG wedge domain CH92_14970 PF01645 Conserved region in glutamate synthase CH92_14975 PF00230 Major intrinsic protein CH92_14980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH92_14980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH92_14985 PF08220 DeoR-like helix-turn-helix domain CH92_14985 PF00455 DeoR C terminal sensor domain CH92_14990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH92_14990 PF01266 FAD dependent oxidoreductase CH92_14995 PF02690 Na+/Pi-cotransporter CH92_15005 PF12849 PBP superfamily domain CH92_15010 PF03976 Polyphosphate kinase 2 (PPK2) CH92_15015 PF05698 Bacterial trigger factor protein (TF) C-terminus CH92_15040 PF00924 Mechanosensitive ion channel CH92_15050 PF00459 Inositol monophosphatase family CH92_15070 PF04445 Putative SAM-dependent methyltransferase CH92_15080 PF01904 Protein of unknown function DUF72 CH92_15090 PF00814 Glycoprotease family CH92_15100 PF05191 Adenylate kinase, active site lid CH92_15105 PF00311 Phosphoenolpyruvate carboxylase CH92_15120 PF00691 OmpA family CH92_15120 PF01389 OmpA-like transmembrane domain CH92_15130 PF13193 AMP-binding enzyme C-terminal domain CH92_15130 PF00501 AMP-binding enzyme CH92_15135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_15140 PF00596 Class II Aldolase and Adducin N-terminal domain CH92_15145 PF13193 AMP-binding enzyme C-terminal domain CH92_15145 PF00501 AMP-binding enzyme CH92_15150 PF01975 Survival protein SurE CH92_15165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_15165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_15165 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_15175 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_15185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_15195 PF00152 tRNA synthetases class II (D, K and N) CH92_15195 PF01336 OB-fold nucleic acid binding domain CH92_15200 PF03462 PCRF domain CH92_15200 PF00472 RF-1 domain CH92_15210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_15215 PF01568 Molydopterin dinucleotide binding domain CH92_15215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_15215 PF00384 Molybdopterin oxidoreductase CH92_15220 PF01368 DHH family CH92_15220 PF17768 RecJ OB domain CH92_15220 PF02272 DHHA1 domain CH92_15230 PF03746 LamB/YcsF family CH92_15235 PF02682 Carboxyltransferase domain, subdomain C and D CH92_15240 PF02626 Carboxyltransferase domain, subdomain A and B CH92_15245 PF01566 Natural resistance-associated macrophage protein CH92_15250 PF07152 YaeQ protein CH92_15255 PF04324 BFD-like [2Fe-2S] binding domain CH92_15260 PF00210 Ferritin-like domain CH92_15265 PF00462 Glutaredoxin CH92_15270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH92_15270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH92_15275 PF00005 ABC transporter CH92_15275 PF08402 TOBE domain CH92_15280 PF14437 MafB19-like deaminase CH92_15285 PF07731 Multicopper oxidase CH92_15285 PF00394 Multicopper oxidase CH92_15285 PF07732 Multicopper oxidase CH92_15295 PF02540 NAD synthase CH92_15295 PF00958 GMP synthase C terminal domain CH92_15295 PF00117 Glutamine amidotransferase class-I CH92_15300 PF00571 CBS domain CH92_15300 PF00478 IMP dehydrogenase / GMP reductase domain CH92_15310 PF02601 Exonuclease VII, large subunit CH92_15310 PF13742 OB-fold nucleic acid binding domain CH92_15315 PF01551 Peptidase family M23 CH92_15315 PF10145 Phage-related minor tail protein CH92_15315 PF01464 Transglycosylase SLT domain CH92_15325 PF00924 Mechanosensitive ion channel CH92_15330 PF08502 LeuA allosteric (dimerisation) domain CH92_15330 PF00682 HMGL-like CH92_15335 PF08240 Alcohol dehydrogenase GroES-like domain CH92_15335 PF00107 Zinc-binding dehydrogenase CH92_15340 PF00892 EamA-like transporter family CH92_15345 PF04231 Endonuclease I CH92_15350 PF09997 Predicted membrane protein (DUF2238) CH92_15360 PF00795 Carbon-nitrogen hydrolase CH92_15365 PF00155 Aminotransferase class I and II CH92_15370 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH92_15370 PF01926 50S ribosome-binding GTPase CH92_15375 PF13360 PQQ-like domain CH92_15380 PF09976 Tetratricopeptide repeat-like domain CH92_15385 PF13393 Histidyl-tRNA synthetase CH92_15385 PF03129 Anticodon binding domain CH92_15390 PF04551 GcpE protein CH92_15405 PF04055 Radical SAM superfamily CH92_15410 PF00334 Nucleoside diphosphate kinase CH92_15415 PF04384 Iron-sulphur cluster assembly CH92_15420 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_15425 PF00012 Hsp70 protein CH92_15430 PF00226 DnaJ domain CH92_15430 PF07743 HSCB C-terminal oligomerisation domain CH92_15435 PF01521 Iron-sulphur cluster biosynthesis CH92_15440 PF01592 NifU-like N terminal domain CH92_15445 PF00266 Aminotransferase class-V CH92_15450 PF02082 Transcriptional regulator CH92_15455 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_15460 PF00588 SpoU rRNA Methylase family CH92_15465 PF00459 Inositol monophosphatase family CH92_15470 PF05433 Glycine zipper 2TM domain CH92_15475 PF07549 SecD/SecF GG Motif CH92_15475 PF02355 Protein export membrane protein CH92_15480 PF13721 SecD export protein N-terminal TM region CH92_15480 PF07549 SecD/SecF GG Motif CH92_15480 PF02355 Protein export membrane protein CH92_15485 PF02699 Preprotein translocase subunit CH92_15490 PF01702 Queuine tRNA-ribosyltransferase CH92_15495 PF02547 Queuosine biosynthesis protein CH92_15505 PF00313 'Cold-shock' DNA-binding domain CH92_15515 PF03739 Lipopolysaccharide export system permease LptF/LptG CH92_15520 PF03739 Lipopolysaccharide export system permease LptF/LptG CH92_15525 PF02789 Cytosol aminopeptidase family, N-terminal domain CH92_15525 PF00883 Cytosol aminopeptidase family, catalytic domain CH92_15530 PF04364 DNA polymerase III chi subunit, HolC CH92_15540 PF10458 Valyl tRNA synthetase tRNA binding arm CH92_15540 PF08264 Anticodon-binding domain of tRNA CH92_15540 PF00133 tRNA synthetases class I (I, L, M and V) CH92_15545 PF03600 Citrate transporter CH92_15555 PF06779 Uncharacterised MFS-type transporter YbfB CH92_15560 PF05971 RNA methyltransferase CH92_15585 PF04245 37-kD nucleoid-associated bacterial protein CH92_15590 PF02673 Bacitracin resistance protein BacA CH92_15600 PF01541 GIY-YIG catalytic domain CH92_15605 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_15605 PF01464 Transglycosylase SLT domain CH92_15610 PF04073 Aminoacyl-tRNA editing domain CH92_15615 PF08267 Cobalamin-independent synthase, N-terminal domain CH92_15615 PF01717 Cobalamin-independent synthase, Catalytic domain CH92_15625 PF03466 LysR substrate binding domain CH92_15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_15635 PF00267 Gram-negative porin CH92_15640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH92_15640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH92_15650 PF12843 Putative quorum-sensing-regulated virulence factor CH92_15655 PF00023 Ankyrin repeat CH92_15655 PF12796 Ankyrin repeats (3 copies) CH92_15665 PF07690 Major Facilitator Superfamily CH92_15675 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH92_15685 PF00072 Response regulator receiver domain CH92_15690 PF07568 Histidine kinase CH92_15690 PF13581 Histidine kinase-like ATPase domain CH92_15690 PF13426 PAS domain CH92_15695 PF03600 Citrate transporter CH92_15695 PF02080 TrkA-C domain CH92_15700 PF00561 alpha/beta hydrolase fold CH92_15725 PF04286 Protein of unknown function (DUF445) CH92_15735 PF07687 Peptidase dimerisation domain CH92_15735 PF01546 Peptidase family M20/M25/M40 CH92_15740 PF02447 GntP family permease CH92_15745 PF02798 Glutathione S-transferase, N-terminal domain CH92_15755 PF04542 Sigma-70 region 2 CH92_15755 PF04545 Sigma-70, region 4 CH92_15775 PF01965 DJ-1/PfpI family CH92_15780 PF00857 Isochorismatase family CH92_15790 PF01925 Sulfite exporter TauE/SafE CH92_15795 PF00753 Metallo-beta-lactamase superfamily CH92_15800 PF03466 LysR substrate binding domain CH92_15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_15805 PF03358 NADPH-dependent FMN reductase CH92_15815 PF00440 Bacterial regulatory proteins, tetR family CH92_15820 PF00106 short chain dehydrogenase CH92_15825 PF01323 DSBA-like thioredoxin domain CH92_15830 PF01738 Dienelactone hydrolase family CH92_15835 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH92_15835 PF00271 Helicase conserved C-terminal domain CH92_15835 PF04408 Helicase associated domain (HA2) CH92_15835 PF11898 Domain of unknown function (DUF3418) CH92_15835 PF00270 DEAD/DEAH box helicase CH92_15840 PF00672 HAMP domain CH92_15840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_15845 PF00501 AMP-binding enzyme CH92_15845 PF13193 AMP-binding enzyme C-terminal domain CH92_15850 PF00501 AMP-binding enzyme CH92_15850 PF13193 AMP-binding enzyme C-terminal domain CH92_15855 PF01575 MaoC like domain CH92_15860 PF00672 HAMP domain CH92_15860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_15885 PF18339 RapA N-terminal Tudor like domain 1 CH92_15885 PF12137 RNA polymerase recycling family C-terminal CH92_15885 PF00271 Helicase conserved C-terminal domain CH92_15885 PF18337 RapA N-terminal Tudor like domain CH92_15885 PF00176 SNF2 family N-terminal domain CH92_15890 PF00270 DEAD/DEAH box helicase CH92_15890 PF00271 Helicase conserved C-terminal domain CH92_15890 PF08494 DEAD/H associated CH92_15900 PF00106 short chain dehydrogenase CH92_15905 PF03781 Sulfatase-modifying factor enzyme 1 CH92_15905 PF12867 DinB superfamily CH92_15915 PF00082 Subtilase family CH92_15915 PF01483 Proprotein convertase P-domain CH92_15920 PF00150 Cellulase (glycosyl hydrolase family 5) CH92_15935 PF00271 Helicase conserved C-terminal domain CH92_15935 PF00270 DEAD/DEAH box helicase CH92_15950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH92_15965 PF00012 Hsp70 protein CH92_15970 PF07690 Major Facilitator Superfamily CH92_15975 PF01261 Xylose isomerase-like TIM barrel CH92_15980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH92_15980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH92_15990 PF01447 Thermolysin metallopeptidase, catalytic domain CH92_15990 PF02868 Thermolysin metallopeptidase, alpha-helical domain CH92_15990 PF16485 Protealysin propeptide CH92_16005 PF00005 ABC transporter CH92_16010 PF00528 Binding-protein-dependent transport system inner membrane component CH92_16015 PF00528 Binding-protein-dependent transport system inner membrane component CH92_16025 PF13458 Periplasmic binding protein CH92_16030 PF02653 Branched-chain amino acid transport system / permease component CH92_16035 PF02653 Branched-chain amino acid transport system / permease component CH92_16035 PF11862 Domain of unknown function (DUF3382) CH92_16040 PF00005 ABC transporter CH92_16040 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_16045 PF00005 ABC transporter CH92_16050 PF01979 Amidohydrolase family CH92_16055 PF00111 2Fe-2S iron-sulfur cluster binding domain CH92_16055 PF01799 [2Fe-2S] binding domain CH92_16060 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_16060 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CH92_16075 PF01979 Amidohydrolase family CH92_16080 PF01297 Zinc-uptake complex component A periplasmic CH92_16085 PF00950 ABC 3 transport family CH92_16090 PF00005 ABC transporter CH92_16095 PF07729 FCD domain CH92_16095 PF00392 Bacterial regulatory proteins, gntR family CH92_16100 PF00860 Permease family CH92_16110 PF00576 HIUase/Transthyretin family CH92_16115 PF01522 Polysaccharide deacetylase CH92_16120 PF09349 OHCU decarboxylase CH92_16120 PF01014 Uricase CH92_16125 PF03561 Allantoicase repeat CH92_16130 PF04115 Ureidoglycolate lyase CH92_16140 PF00860 Permease family CH92_16145 PF02254 TrkA-N domain CH92_16145 PF00999 Sodium/hydrogen exchanger family CH92_16150 PF00860 Permease family CH92_16160 PF02743 Cache domain CH92_16160 PF00672 HAMP domain CH92_16160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_16165 PF00990 Diguanylate cyclase, GGDEF domain CH92_16165 PF17158 Membrane-associated sensor, integral membrane domain CH92_16175 PF00440 Bacterial regulatory proteins, tetR family CH92_16175 PF08362 YcdC-like protein, C-terminal region CH92_16180 PF03707 Bacterial signalling protein N terminal repeat CH92_16180 PF00563 EAL domain CH92_16180 PF00990 Diguanylate cyclase, GGDEF domain CH92_16200 PF04011 LemA family CH92_16225 PF00672 HAMP domain CH92_16225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_16230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH92_16235 PF00873 AcrB/AcrD/AcrF family CH92_16245 PF00118 TCP-1/cpn60 chaperonin family CH92_16250 PF00166 Chaperonin 10 Kd subunit CH92_16260 PF04186 FxsA cytoplasmic membrane protein CH92_16280 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH92_16285 PF07690 Major Facilitator Superfamily CH92_16290 PF00924 Mechanosensitive ion channel CH92_16290 PF05552 Conserved TM helix CH92_16295 PF04461 Protein of unknown function (DUF520) CH92_16305 PF02558 Ketopantoate reductase PanE/ApbA CH92_16305 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH92_16310 PF00989 PAS fold CH92_16310 PF08447 PAS fold CH92_16310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_16310 PF00512 His Kinase A (phospho-acceptor) domain CH92_16315 PF01923 Cobalamin adenosyltransferase CH92_16335 PF13192 Thioredoxin domain CH92_16335 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_16340 PF00578 AhpC/TSA family CH92_16340 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH92_16345 PF00293 NUDIX domain CH92_16350 PF01960 ArgJ family CH92_16355 PF07516 SecA Wing and Scaffold domain CH92_16355 PF02810 SEC-C motif CH92_16355 PF01043 SecA preprotein cross-linking domain CH92_16355 PF07517 SecA DEAD-like domain CH92_16380 PF00196 Bacterial regulatory proteins, luxR family CH92_16385 PF07044 Protein of unknown function (DUF1329) CH92_16405 PF00860 Permease family CH92_16415 PF09411 Lipid A 3-O-deacylase (PagL) CH92_16420 PF01177 Asp/Glu/Hydantoin racemase CH92_16425 PF00899 ThiF family CH92_16430 PF17827 PrmC N-terminal domain CH92_16430 PF05175 Methyltransferase small domain CH92_16435 PF00472 RF-1 domain CH92_16435 PF03462 PCRF domain CH92_16440 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH92_16440 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH92_16440 PF01488 Shikimate / quinate 5-dehydrogenase CH92_16450 PF03550 Outer membrane lipoprotein LolB CH92_16455 PF08544 GHMP kinases C terminal CH92_16455 PF00288 GHMP kinases N terminal domain CH92_16470 PF14572 Phosphoribosyl synthetase-associated domain CH92_16470 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH92_16475 PF14693 Ribosomal protein TL5, C-terminal domain CH92_16475 PF01386 Ribosomal L25p family CH92_16480 PF01195 Peptidyl-tRNA hydrolase CH92_16485 PF01926 50S ribosome-binding GTPase CH92_16485 PF06071 Protein of unknown function (DUF933) CH92_16490 PF02245 Methylpurine-DNA glycosylase (MPG) CH92_16495 PF00149 Calcineurin-like phosphoesterase CH92_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_16505 PF03466 LysR substrate binding domain CH92_16510 PF07690 Major Facilitator Superfamily CH92_16515 PF00248 Aldo/keto reductase family CH92_16550 PF03573 outer membrane porin, OprD family CH92_16555 PF14698 Argininosuccinate lyase C-terminal CH92_16555 PF00206 Lyase CH92_16560 PF00375 Sodium:dicarboxylate symporter family CH92_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_16565 PF03466 LysR substrate binding domain CH92_16580 PF00484 Carbonic anhydrase CH92_16585 PF00982 Glycosyltransferase family 20 CH92_16590 PF02358 Trehalose-phosphatase CH92_16600 PF00583 Acetyltransferase (GNAT) family CH92_16610 PF00682 HMGL-like CH92_16610 PF08502 LeuA allosteric (dimerisation) domain CH92_16660 PF01794 Ferric reductase like transmembrane component CH92_16665 PF00174 Oxidoreductase molybdopterin binding domain CH92_16670 PF01066 CDP-alcohol phosphatidyltransferase CH92_16675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH92_16675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH92_16680 PF10369 Small subunit of acetolactate synthase CH92_16685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH92_16685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH92_16685 PF00205 Thiamine pyrophosphate enzyme, central domain CH92_16695 PF04287 tRNA pseudouridine synthase C CH92_16705 PF00912 Transglycosylase CH92_16705 PF00905 Penicillin binding protein transpeptidase domain CH92_16705 PF14814 Bifunctional transglycosylase second domain CH92_16715 PF08241 Methyltransferase domain CH92_16755 PF02683 Cytochrome C biogenesis protein transmembrane region CH92_16755 PF11412 Disulphide bond corrector protein DsbC CH92_16760 PF01220 Dehydroquinase class II CH92_16765 PF00364 Biotin-requiring enzyme CH92_16770 PF00289 Biotin carboxylase, N-terminal domain CH92_16770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH92_16770 PF02785 Biotin carboxylase C-terminal domain CH92_16785 PF01207 Dihydrouridine synthase (Dus) CH92_16790 PF02954 Bacterial regulatory protein, Fis family CH92_16795 PF02142 MGS-like domain CH92_16795 PF01808 AICARFT/IMPCHase bienzyme CH92_16800 PF02843 Phosphoribosylglycinamide synthetase, C domain CH92_16800 PF02844 Phosphoribosylglycinamide synthetase, N domain CH92_16800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH92_16805 PF01627 Hpt domain CH92_16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_16805 PF00672 HAMP domain CH92_16805 PF00072 Response regulator receiver domain CH92_16805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_16805 PF00512 His Kinase A (phospho-acceptor) domain CH92_16810 PF00067 Cytochrome P450 CH92_16825 PF03547 Membrane transport protein CH92_16830 PF04321 RmlD substrate binding domain CH92_16850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH92_16855 PF00091 Tubulin/FtsZ family, GTPase domain CH92_16855 PF12327 FtsZ family, C-terminal domain CH92_16860 PF02491 SHS2 domain inserted in FTSA CH92_16865 PF08478 POTRA domain, FtsQ-type CH92_16865 PF03799 Cell division protein FtsQ CH92_16870 PF01820 D-ala D-ala ligase N-terminus CH92_16870 PF07478 D-ala D-ala ligase C-terminus CH92_16875 PF01225 Mur ligase family, catalytic domain CH92_16875 PF08245 Mur ligase middle domain CH92_16875 PF02875 Mur ligase family, glutamate ligase domain CH92_16880 PF04101 Glycosyltransferase family 28 C-terminal domain CH92_16880 PF03033 Glycosyltransferase family 28 N-terminal domain CH92_16885 PF01098 Cell cycle protein CH92_16890 PF08245 Mur ligase middle domain CH92_16890 PF02875 Mur ligase family, glutamate ligase domain CH92_16895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH92_16895 PF00953 Glycosyl transferase family 4 CH92_16900 PF02875 Mur ligase family, glutamate ligase domain CH92_16900 PF01225 Mur ligase family, catalytic domain CH92_16900 PF08245 Mur ligase middle domain CH92_16905 PF01225 Mur ligase family, catalytic domain CH92_16905 PF08245 Mur ligase middle domain CH92_16905 PF02875 Mur ligase family, glutamate ligase domain CH92_16910 PF00905 Penicillin binding protein transpeptidase domain CH92_16910 PF03717 Penicillin-binding Protein dimerisation domain CH92_16915 PF04999 Cell division protein FtsL CH92_16920 PF01795 MraW methylase family CH92_16925 PF02381 MraZ protein, putative antitoxin-like CH92_16930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH92_16935 PF04348 LppC putative lipoprotein CH92_16940 PF02021 Uncharacterised protein family UPF0102 CH92_16945 PF13580 SIS domain CH92_16950 PF04972 BON domain CH92_16955 PF04386 Stringent starvation protein B CH92_16960 PF02798 Glutathione S-transferase, N-terminal domain CH92_16960 PF00043 Glutathione S-transferase, C-terminal domain CH92_16965 PF02167 Cytochrome C1 family CH92_16970 PF00032 Cytochrome b(C-terminal)/b6/petD CH92_16970 PF00033 Cytochrome b/b6/petB CH92_16975 PF00355 Rieske [2Fe-2S] domain CH92_16975 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CH92_16980 PF00380 Ribosomal protein S9/S16 CH92_16985 PF00572 Ribosomal protein L13 CH92_16990 PF00248 Aldo/keto reductase family CH92_17000 PF03884 DNA gyrase inhibitor YacG CH92_17005 PF01121 Dephospho-CoA kinase CH92_17010 PF01478 Type IV leader peptidase family CH92_17010 PF06750 Bacterial Peptidase A24 N-terminal domain CH92_17015 PF00482 Type II secretion system (T2SS), protein F CH92_17020 PF00437 Type II/IV secretion system protein CH92_17020 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH92_17025 PF07963 Prokaryotic N-terminal methylation motif CH92_17025 PF00114 Pilin (bacterial filament) CH92_17040 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ CH92_17045 PF00009 Elongation factor Tu GTP binding domain CH92_17050 PF01507 Phosphoadenosine phosphosulfate reductase family CH92_17055 PF01784 NIF3 (NGG1p interacting factor 3) CH92_17060 PF13180 PDZ domain CH92_17065 PF00155 Aminotransferase class I and II CH92_17070 PF00815 Histidinol dehydrogenase CH92_17075 PF01634 ATP phosphoribosyltransferase CH92_17080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH92_17090 PF06146 Phosphate-starvation-inducible E CH92_17100 PF05494 MlaC protein CH92_17105 PF02470 MlaD protein CH92_17110 PF02405 Permease MlaE CH92_17115 PF00005 ABC transporter CH92_17120 PF00571 CBS domain CH92_17120 PF01380 SIS domain CH92_17135 PF03968 OstA-like protein CH92_17140 PF00005 ABC transporter CH92_17140 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_17145 PF04552 Sigma-54, DNA binding domain CH92_17145 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH92_17145 PF04963 Sigma-54 factor, core binding domain CH92_17150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH92_17155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH92_17160 PF03668 P-loop ATPase protein family CH92_17165 PF00381 PTS HPr component phosphorylation site CH92_17170 PF01523 Putative modulator of DNA gyrase CH92_17175 PF04751 Protein of unknown function (DUF615) CH92_17180 PF01523 Putative modulator of DNA gyrase CH92_17185 PF00795 Carbon-nitrogen hydrolase CH92_17195 PF10150 Ribonuclease E/G family CH92_17195 PF00575 S1 RNA binding domain CH92_17200 PF02545 Maf-like protein CH92_17210 PF04085 rod shape-determining protein MreC CH92_17220 PF02686 Glu-tRNAGln amidotransferase C subunit CH92_17225 PF01425 Amidase CH92_17230 PF02637 GatB domain CH92_17230 PF02934 GatB/GatE catalytic domain CH92_17235 PF03330 Lytic transglycolase CH92_17240 PF01699 Sodium/calcium exchanger protein CH92_17245 PF01699 Sodium/calcium exchanger protein CH92_17260 PF08525 Opacity-associated protein A N-terminal motif CH92_17260 PF01551 Peptidase family M23 CH92_17260 PF01476 LysM domain CH92_17275 PF00072 Response regulator receiver domain CH92_17275 PF02954 Bacterial regulatory protein, Fis family CH92_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_17280 PF00512 His Kinase A (phospho-acceptor) domain CH92_17305 PF00667 FAD binding domain CH92_17305 PF00175 Oxidoreductase NAD-binding domain CH92_17305 PF00258 Flavodoxin CH92_17310 PF00593 TonB dependent receptor CH92_17310 PF07715 TonB-dependent Receptor Plug Domain CH92_17315 PF18331 PKHD-type hydroxylase C-terminal domain CH92_17315 PF13640 2OG-Fe(II) oxygenase superfamily CH92_17325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH92_17325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH92_17330 PF16658 Class II release factor RF3, C-terminal domain CH92_17330 PF03144 Elongation factor Tu domain 2 CH92_17330 PF00009 Elongation factor Tu GTP binding domain CH92_17335 PF00849 RNA pseudouridylate synthase CH92_17345 PF00205 Thiamine pyrophosphate enzyme, central domain CH92_17345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH92_17345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH92_17365 PF03413 Peptidase propeptide and YPEB domain CH92_17370 PF00486 Transcriptional regulatory protein, C terminal CH92_17370 PF00072 Response regulator receiver domain CH92_17375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_17375 PF08918 PhoQ Sensor CH92_17400 PF00149 Calcineurin-like phosphoesterase CH92_17400 PF12320 Type 5 capsule protein repressor C-terminal domain CH92_17410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH92_17410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH92_17425 PF02560 Cyanate lyase C-terminal domain CH92_17435 PF00199 Catalase CH92_17435 PF06628 Catalase-related immune-responsive CH92_17450 PF03061 Thioesterase superfamily CH92_17455 PF08274 PhnA Zinc-Ribbon CH92_17455 PF03831 PhnA domain CH92_17460 PF01011 PQQ enzyme repeat CH92_17465 PF02378 Phosphotransferase system, EIIC CH92_17465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH92_17470 PF00294 pfkB family carbohydrate kinase CH92_17475 PF02896 PEP-utilising enzyme, TIM barrel domain CH92_17475 PF00381 PTS HPr component phosphorylation site CH92_17475 PF00391 PEP-utilising enzyme, mobile domain CH92_17475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH92_17475 PF05524 PEP-utilising enzyme, N-terminal CH92_17480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH92_17480 PF00356 Bacterial regulatory proteins, lacI family CH92_17520 PF01554 MatE CH92_17550 PF07995 Glucose / Sorbosone dehydrogenase CH92_17555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH92_17560 PF00589 Phage integrase family CH92_17560 PF13495 Phage integrase, N-terminal SAM-like domain CH92_17630 PF01595 Cyclin M transmembrane N-terminal domain CH92_17630 PF00571 CBS domain CH92_17660 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH92_17665 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH92_17665 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH92_17675 PF03860 Domain of Unknown Function (DUF326) CH92_17680 PF01205 Uncharacterized protein family UPF0029 CH92_17680 PF09186 Domain of unknown function (DUF1949) CH92_17685 PF00962 Adenosine/AMP deaminase CH92_17690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_17690 PF03466 LysR substrate binding domain CH92_17695 PF08240 Alcohol dehydrogenase GroES-like domain CH92_17695 PF00107 Zinc-binding dehydrogenase CH92_17700 PF07690 Major Facilitator Superfamily CH92_17705 PF08361 MAATS-type transcriptional repressor, C-terminal region CH92_17705 PF00440 Bacterial regulatory proteins, tetR family CH92_17715 PF00403 Heavy-metal-associated domain CH92_17720 PF00376 MerR family regulatory protein CH92_17720 PF09278 MerR, DNA binding CH92_17730 PF00210 Ferritin-like domain CH92_17735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH92_17740 PF00873 AcrB/AcrD/AcrF family CH92_17745 PF02321 Outer membrane efflux protein CH92_17755 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH92_17755 PF02805 Metal binding domain of Ada CH92_17755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH92_17755 PF12833 Helix-turn-helix domain CH92_17765 PF01026 TatD related DNase CH92_17780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_17780 PF02743 Cache domain CH92_17780 PF00672 HAMP domain CH92_17790 PF01510 N-acetylmuramoyl-L-alanine amidase CH92_17795 PF04493 Endonuclease V CH92_17800 PF12833 Helix-turn-helix domain CH92_17800 PF01965 DJ-1/PfpI family CH92_17805 PF03969 AFG1-like ATPase CH92_17810 PF00579 tRNA synthetases class I (W and Y) CH92_17825 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH92_17825 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH92_17840 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_17860 PF10431 C-terminal, D2-small domain, of ClpB protein CH92_17860 PF00004 ATPase family associated with various cellular activities (AAA) CH92_17860 PF02861 Clp amino terminal domain, pathogenicity island component CH92_17860 PF17871 AAA lid domain CH92_17860 PF07724 AAA domain (Cdc48 subfamily) CH92_17870 PF01479 S4 domain CH92_17870 PF00849 RNA pseudouridylate synthase CH92_17875 PF13525 Outer membrane lipoprotein CH92_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_17885 PF00512 His Kinase A (phospho-acceptor) domain CH92_17890 PF00158 Sigma-54 interaction domain CH92_17890 PF02954 Bacterial regulatory protein, Fis family CH92_17890 PF00072 Response regulator receiver domain CH92_17900 PF00072 Response regulator receiver domain CH92_17900 PF00990 Diguanylate cyclase, GGDEF domain CH92_17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_17910 PF04055 Radical SAM superfamily CH92_17910 PF11842 Domain of unknown function (DUF3362) CH92_17910 PF08497 Radical SAM N-terminal CH92_17925 PF02796 Helix-turn-helix domain of resolvase CH92_17925 PF00239 Resolvase, N terminal domain CH92_17940 PF00842 Alanine racemase, C-terminal domain CH92_17940 PF01168 Alanine racemase, N-terminal domain CH92_17955 PF00772 DnaB-like helicase N terminal domain CH92_17955 PF03796 DnaB-like helicase C terminal domain CH92_17960 PF03948 Ribosomal protein L9, C-terminal domain CH92_17960 PF01281 Ribosomal protein L9, N-terminal domain CH92_17970 PF01084 Ribosomal protein S18 CH92_17975 PF01250 Ribosomal protein S6 CH92_17980 PF13188 PAS domain CH92_17980 PF08448 PAS fold CH92_17980 PF00512 His Kinase A (phospho-acceptor) domain CH92_17980 PF00072 Response regulator receiver domain CH92_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_17985 PF00588 SpoU rRNA Methylase family CH92_17985 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH92_17990 PF08206 Ribonuclease B OB domain CH92_17990 PF08461 Ribonuclease R winged-helix domain CH92_17990 PF17876 Cold shock domain CH92_17990 PF00773 RNB domain CH92_17990 PF00575 S1 RNA binding domain CH92_18005 PF00709 Adenylosuccinate synthetase CH92_18010 PF13393 Histidyl-tRNA synthetase CH92_18015 PF01145 SPFH domain / Band 7 family CH92_18020 PF01145 SPFH domain / Band 7 family CH92_18020 PF12221 Bacterial membrane protein N terminal CH92_18025 PF01926 50S ribosome-binding GTPase CH92_18025 PF13167 GTP-binding GTPase N-terminal CH92_18025 PF16360 GTP-binding GTPase Middle Region CH92_18030 PF17209 Hfq protein CH92_18040 PF08676 MutL C terminal dimerisation domain CH92_18040 PF01119 DNA mismatch repair protein, C-terminal domain CH92_18045 PF11741 AMIN domain CH92_18045 PF01520 N-acetylmuramoyl-L-alanine amidase CH92_18050 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH92_18055 PF03853 YjeF-related protein N-terminus CH92_18055 PF01256 Carbohydrate kinase CH92_18060 PF08331 Domain of unknown function (DUF1730) CH92_18070 PF02441 Flavoprotein CH92_18075 PF01225 Mur ligase family, catalytic domain CH92_18075 PF08245 Mur ligase middle domain CH92_18075 PF02875 Mur ligase family, glutamate ligase domain CH92_18080 PF00171 Aldehyde dehydrogenase family CH92_18085 PF13520 Amino acid permease CH92_18090 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CH92_18095 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CH92_18110 PF06167 Glucose-regulated metallo-peptidase M90 CH92_18115 PF00719 Inorganic pyrophosphatase CH92_18120 PF07519 Tannase and feruloyl esterase CH92_18125 PF07690 Major Facilitator Superfamily CH92_18130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH92_18130 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit CH92_18135 PF00753 Metallo-beta-lactamase superfamily CH92_18140 PF03466 LysR substrate binding domain CH92_18140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_18145 PF02585 GlcNAc-PI de-N-acetylase CH92_18150 PF03737 Aldolase/RraA CH92_18155 PF04303 PrpF protein CH92_18170 PF01497 Periplasmic binding protein CH92_18180 PF01032 FecCD transport family CH92_18185 PF00005 ABC transporter CH92_18190 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_18200 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_18205 PF03573 outer membrane porin, OprD family CH92_18210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_18210 PF13426 PAS domain CH92_18210 PF00072 Response regulator receiver domain CH92_18215 PF05067 Manganese containing catalase CH92_18225 PF08443 RimK-like ATP-grasp domain CH92_18225 PF18030 RimK PreATP-grasp domain CH92_18235 PF00106 short chain dehydrogenase CH92_18240 PF01545 Cation efflux family CH92_18245 PF13411 MerR HTH family regulatory protein CH92_18250 PF01925 Sulfite exporter TauE/SafE CH92_18255 PF02609 Exonuclease VII small subunit CH92_18260 PF00348 Polyprenyl synthetase CH92_18265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH92_18265 PF02779 Transketolase, pyrimidine binding domain CH92_18265 PF02780 Transketolase, C-terminal domain CH92_18275 PF00593 TonB dependent receptor CH92_18275 PF07715 TonB-dependent Receptor Plug Domain CH92_18280 PF01497 Periplasmic binding protein CH92_18290 PF00925 GTP cyclohydrolase II CH92_18305 PF00586 AIR synthase related protein, N-terminal domain CH92_18305 PF02769 AIR synthase related protein, C-terminal domain CH92_18310 PF01029 NusB family CH92_18315 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH92_18320 PF00925 GTP cyclohydrolase II CH92_18320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH92_18325 PF00677 Lumazine binding domain CH92_18335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH92_18335 PF01872 RibD C-terminal domain CH92_18340 PF03477 ATP cone domain CH92_18360 PF00085 Thioredoxin CH92_18380 PF00850 Histone deacetylase domain CH92_18385 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH92_18385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH92_18400 PF00270 DEAD/DEAH box helicase CH92_18400 PF00271 Helicase conserved C-terminal domain CH92_18435 PF00270 DEAD/DEAH box helicase CH92_18435 PF04408 Helicase associated domain (HA2) CH92_18435 PF00271 Helicase conserved C-terminal domain CH92_18435 PF08482 ATP-dependent helicase C-terminal CH92_18450 PF01545 Cation efflux family CH92_18450 PF16916 Dimerisation domain of Zinc Transporter CH92_18455 PF13404 AsnC-type helix-turn-helix domain CH92_18455 PF01037 Lrp/AsnC ligand binding domain CH92_18465 PF00849 RNA pseudouridylate synthase CH92_18480 PF02653 Branched-chain amino acid transport system / permease component CH92_18485 PF02653 Branched-chain amino acid transport system / permease component CH92_18490 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_18490 PF00005 ABC transporter CH92_18495 PF00005 ABC transporter CH92_18510 PF00005 ABC transporter CH92_18515 PF00005 ABC transporter CH92_18515 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH92_18520 PF11862 Domain of unknown function (DUF3382) CH92_18520 PF02653 Branched-chain amino acid transport system / permease component CH92_18525 PF02653 Branched-chain amino acid transport system / permease component CH92_18530 PF01774 UreD urease accessory protein CH92_18535 PF00547 Urease, gamma subunit CH92_18545 PF00699 Urease beta subunit CH92_18550 PF01979 Amidohydrolase family CH92_18550 PF00449 Urease alpha-subunit, N-terminal domain CH92_18555 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH92_18560 PF00512 His Kinase A (phospho-acceptor) domain CH92_18560 PF08446 PAS fold CH92_18560 PF00360 Phytochrome region CH92_18560 PF01590 GAF domain CH92_18560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_18570 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH92_18580 PF07690 Major Facilitator Superfamily CH92_18600 PF05194 UreE urease accessory protein, C-terminal domain CH92_18600 PF02814 UreE urease accessory protein, N-terminal domain CH92_18605 PF01730 UreF CH92_18610 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH92_18615 PF04955 HupE / UreJ protein CH92_18620 PF01048 Phosphorylase superfamily CH92_18620 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH92_18630 PF00585 C-terminal regulatory domain of Threonine dehydratase CH92_18630 PF00291 Pyridoxal-phosphate dependent enzyme CH92_18635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_18635 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_18635 PF18158 Adaptive response protein AidB N-terminal domain CH92_18640 PF01627 Hpt domain CH92_18640 PF00672 HAMP domain CH92_18640 PF00072 Response regulator receiver domain CH92_18640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_18640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_18640 PF00512 His Kinase A (phospho-acceptor) domain CH92_18650 PF08543 Phosphomethylpyrimidine kinase CH92_18655 PF02581 Thiamine monophosphate synthase CH92_18660 PF00202 Aminotransferase class-III CH92_18680 PF04055 Radical SAM superfamily CH92_18680 PF00919 Uncharacterized protein family UPF0004 CH92_18680 PF01938 TRAM domain CH92_18685 PF02562 PhoH-like protein CH92_18690 PF02130 Uncharacterized protein family UPF0054 CH92_18695 PF00571 CBS domain CH92_18695 PF03471 Transporter associated domain CH92_18700 PF00795 Carbon-nitrogen hydrolase CH92_18715 PF00133 tRNA synthetases class I (I, L, M and V) CH92_18715 PF09334 tRNA synthetases class I (M) CH92_18715 PF13603 Leucyl-tRNA synthetase, Domain 2 CH92_18715 PF08264 Anticodon-binding domain of tRNA CH92_18735 PF13406 Transglycosylase SLT domain CH92_18750 PF04055 Radical SAM superfamily CH92_18755 PF03099 Biotin/lipoate A/B protein ligase family CH92_18760 PF04359 Protein of unknown function (DUF493) CH92_18765 PF07943 Penicillin-binding protein 5, C-terminal domain CH92_18765 PF00768 D-alanyl-D-alanine carboxypeptidase CH92_18770 PF03330 Lytic transglycolase CH92_18770 PF05036 Sporulation related domain CH92_18775 PF13406 Transglycosylase SLT domain CH92_18780 PF01098 Cell cycle protein CH92_18785 PF00905 Penicillin binding protein transpeptidase domain CH92_18785 PF03717 Penicillin-binding Protein dimerisation domain CH92_18790 PF02590 Predicted SPOUT methyltransferase CH92_18800 PF01467 Cytidylyltransferase-like CH92_18805 PF00171 Aldehyde dehydrogenase family CH92_18810 PF09335 SNARE associated Golgi protein CH92_18820 PF04172 LrgB-like family CH92_18825 PF03788 LrgA family CH92_18840 PF13460 NAD(P)H-binding CH92_18845 PF00929 Exonuclease CH92_18855 PF03193 RsgA GTPase CH92_18860 PF00691 OmpA family CH92_18860 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH92_18865 PF01618 MotA/TolQ/ExbB proton channel family CH92_18875 PF00581 Rhodanese-like domain CH92_18880 PF02666 Phosphatidylserine decarboxylase CH92_18910 PF00521 DNA gyrase/topoisomerase IV, subunit A CH92_18910 PF03989 DNA gyrase C-terminal domain, beta-propeller CH92_18925 PF00204 DNA gyrase B CH92_18925 PF00986 DNA gyrase B subunit, carboxyl terminus CH92_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_18925 PF01751 Toprim domain CH92_18930 PF05728 Uncharacterised protein family (UPF0227) CH92_18935 PF00149 Calcineurin-like phosphoesterase CH92_18945 PF00293 NUDIX domain CH92_18960 PF13667 ThiC-associated domain CH92_18960 PF01964 Radical SAM ThiC family CH92_18965 PF02321 Outer membrane efflux protein CH92_18970 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH92_18975 PF00893 Small Multidrug Resistance protein CH92_18980 PF01266 FAD dependent oxidoreductase CH92_18985 PF00248 Aldo/keto reductase family CH92_18995 PF00294 pfkB family carbohydrate kinase CH92_18995 PF01467 Cytidylyltransferase-like CH92_19010 PF00005 ABC transporter CH92_19010 PF00664 ABC transporter transmembrane region CH92_19035 PF02348 Cytidylyltransferase CH92_19040 PF00682 HMGL-like CH92_19040 PF07836 DmpG-like communication domain CH92_19055 PF00534 Glycosyl transferases group 1 CH92_19055 PF13439 Glycosyltransferase Family 4 CH92_19060 PF16861 Carbamoyltransferase C-terminus CH92_19060 PF02543 Carbamoyltransferase N-terminus CH92_19080 PF13439 Glycosyltransferase Family 4 CH92_19080 PF00534 Glycosyl transferases group 1 CH92_19085 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH92_19090 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH92_19095 PF01063 Amino-transferase class IV CH92_19100 PF08335 GlnD PII-uridylyltransferase CH92_19100 PF03710 Glutamate-ammonia ligase adenylyltransferase CH92_19105 PF17831 Pyruvate dehydrogenase E1 component middle domain CH92_19105 PF00456 Transketolase, thiamine diphosphate binding domain CH92_19110 PF00364 Biotin-requiring enzyme CH92_19110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH92_19110 PF02817 e3 binding domain CH92_19120 PF00990 Diguanylate cyclase, GGDEF domain CH92_19120 PF03707 Bacterial signalling protein N terminal repeat CH92_19120 PF00563 EAL domain CH92_19125 PF01625 Peptide methionine sulfoxide reductase CH92_19130 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_19130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_19130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_19130 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_19135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_19135 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_19135 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_19135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_19140 PF00990 Diguanylate cyclase, GGDEF domain CH92_19145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_19145 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_19145 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_19145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_19160 PF08241 Methyltransferase domain CH92_19165 PF12697 Alpha/beta hydrolase family CH92_19165 PF08241 Methyltransferase domain CH92_19170 PF00155 Aminotransferase class I and II CH92_19175 PF06968 Biotin and Thiamin Synthesis associated domain CH92_19175 PF04055 Radical SAM superfamily CH92_19180 PF00156 Phosphoribosyl transferase domain CH92_19185 PF01636 Phosphotransferase enzyme family CH92_19190 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH92_19195 PF03060 Nitronate monooxygenase CH92_19200 PF04116 Fatty acid hydroxylase superfamily CH92_19210 PF01593 Flavin containing amine oxidoreductase CH92_19220 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CH92_19230 PF00348 Polyprenyl synthetase CH92_19235 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_19235 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_19235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_19235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_19240 PF02080 TrkA-C domain CH92_19240 PF00999 Sodium/hydrogen exchanger family CH92_19240 PF03471 Transporter associated domain CH92_19245 PF00924 Mechanosensitive ion channel CH92_19245 PF12795 Mechanosensitive ion channel porin domain CH92_19245 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH92_19250 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH92_19255 PF05638 Type VI secretion system effector, Hcp CH92_19260 PF04717 Type VI secretion system, phage-baseplate injector CH92_19260 PF16671 Actin cross-linking domain CH92_19330 PF00392 Bacterial regulatory proteins, gntR family CH92_19330 PF07702 UTRA domain CH92_19355 PF08402 TOBE domain CH92_19355 PF00005 ABC transporter CH92_19365 PF00990 Diguanylate cyclase, GGDEF domain CH92_19365 PF00072 Response regulator receiver domain CH92_19370 PF01339 CheB methylesterase CH92_19375 PF01739 CheR methyltransferase, SAM binding domain CH92_19375 PF03705 CheR methyltransferase, all-alpha domain CH92_19380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH92_19380 PF00072 Response regulator receiver domain CH92_19380 PF01627 Hpt domain CH92_19380 PF00672 HAMP domain CH92_19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_19380 PF00512 His Kinase A (phospho-acceptor) domain CH92_19395 PF00753 Metallo-beta-lactamase superfamily CH92_19405 PF16200 C-terminal region of band_7 CH92_19405 PF01145 SPFH domain / Band 7 family CH92_19415 PF01204 Trehalase CH92_19425 PF00892 EamA-like transporter family CH92_19430 PF02824 TGS domain CH92_19430 PF13291 ACT domain CH92_19430 PF04607 Region found in RelA / SpoT proteins CH92_19435 PF01274 Malate synthase CH92_19440 PF00672 HAMP domain CH92_19440 PF02743 Cache domain CH92_19440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_19460 PF00929 Exonuclease CH92_19460 PF02811 PHP domain CH92_19460 PF14579 Helix-hairpin-helix motif CH92_19460 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH92_19460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH92_19460 PF11490 DNA polymerase III polC-type N-terminus II CH92_19465 PF08281 Sigma-70, region 4 CH92_19465 PF04542 Sigma-70 region 2 CH92_19470 PF04773 FecR protein CH92_19470 PF16220 Domain of unknown function (DUF4880) CH92_19495 PF00474 Sodium:solute symporter family CH92_19510 PF00271 Helicase conserved C-terminal domain CH92_19510 PF00270 DEAD/DEAH box helicase CH92_19510 PF03880 DbpA RNA binding domain CH92_19520 PF12805 FUSC-like inner membrane protein yccS CH92_19555 PF00072 Response regulator receiver domain CH92_19555 PF00158 Sigma-54 interaction domain CH92_19560 PF01116 Fructose-bisphosphate aldolase class-II CH92_19575 PF00162 Phosphoglycerate kinase CH92_19580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_19580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH92_19585 PF00456 Transketolase, thiamine diphosphate binding domain CH92_19585 PF02780 Transketolase, C-terminal domain CH92_19585 PF02779 Transketolase, pyrimidine binding domain CH92_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_19590 PF03466 LysR substrate binding domain CH92_19605 PF13649 Methyltransferase domain CH92_19610 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH92_19610 PF02772 S-adenosylmethionine synthetase, central domain CH92_19610 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH92_19620 PF01061 ABC-2 type transporter CH92_19625 PF00005 ABC transporter CH92_19630 PF03120 NAD-dependent DNA ligase OB-fold domain CH92_19630 PF01653 NAD-dependent DNA ligase adenylation domain CH92_19650 PF00999 Sodium/hydrogen exchanger family CH92_19655 PF05221 S-adenosyl-L-homocysteine hydrolase CH92_19655 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CH92_19660 PF02219 Methylenetetrahydrofolate reductase CH92_19670 PF02321 Outer membrane efflux protein CH92_19675 PF00873 AcrB/AcrD/AcrF family CH92_19680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH92_19680 PF00529 HlyD membrane-fusion protein of T1SS CH92_19685 PF04264 YceI-like domain CH92_19690 PF01292 Prokaryotic cytochrome b561 CH92_19695 PF00202 Aminotransferase class-III CH92_19700 PF04452 RNA methyltransferase CH92_19710 PF01339 CheB methylesterase CH92_19715 PF02895 Signal transducing histidine kinase, homodimeric domain CH92_19715 PF01584 CheW-like domain CH92_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_19715 PF01627 Hpt domain CH92_19715 PF07194 P2 response regulator binding domain CH92_19720 PF03705 CheR methyltransferase, all-alpha domain CH92_19720 PF01739 CheR methyltransferase, SAM binding domain CH92_19725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH92_19725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_19730 PF01584 CheW-like domain CH92_19735 PF00072 Response regulator receiver domain CH92_19740 PF00072 Response regulator receiver domain CH92_19745 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH92_19745 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH92_19755 PF02622 Uncharacterized ACR, COG1678 CH92_19760 PF03652 Holliday junction resolvase CH92_19765 PF00156 Phosphoribosyl transferase domain CH92_19770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH92_19770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH92_19775 PF01979 Amidohydrolase family CH92_19795 PF00437 Type II/IV secretion system protein CH92_19800 PF00437 Type II/IV secretion system protein CH92_19805 PF01168 Alanine racemase, N-terminal domain CH92_19810 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH92_19810 PF03807 NADP oxidoreductase coenzyme F420-dependent CH92_19815 PF02325 YGGT family CH92_19820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH92_19820 PF01926 50S ribosome-binding GTPase CH92_19825 PF00561 alpha/beta hydrolase fold CH92_19830 PF07021 Methionine biosynthesis protein MetW CH92_19830 PF00561 alpha/beta hydrolase fold CH92_19840 PF01725 Ham1 family CH92_19845 PF04055 Radical SAM superfamily CH92_19845 PF06969 HemN C-terminal domain CH92_19855 PF07044 Protein of unknown function (DUF1329) CH92_19860 PF02390 Putative methyltransferase CH92_19865 PF05690 Thiazole biosynthesis protein ThiG CH92_19870 PF05690 Thiazole biosynthesis protein ThiG CH92_19870 PF02597 ThiS family CH92_19875 PF04241 Protein of unknown function (DUF423) CH92_19880 PF00912 Transglycosylase CH92_19885 PF00512 His Kinase A (phospho-acceptor) domain CH92_19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_19885 PF00072 Response regulator receiver domain CH92_19885 PF13426 PAS domain CH92_19885 PF08448 PAS fold CH92_19890 PF04545 Sigma-70, region 4 CH92_19890 PF00140 Sigma-70 factor, region 1.2 CH92_19890 PF04542 Sigma-70 region 2 CH92_19895 PF18075 FtsX extracellular domain CH92_19900 PF00005 ABC transporter CH92_19905 PF02881 SRP54-type protein, helical bundle domain CH92_19905 PF00448 SRP54-type protein, GTPase domain CH92_19910 PF00675 Insulinase (Peptidase family M16) CH92_19910 PF05193 Peptidase M16 inactive domain CH92_19915 PF05193 Peptidase M16 inactive domain CH92_19930 PF01467 Cytidylyltransferase-like CH92_19935 PF00037 4Fe-4S binding domain CH92_19945 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH92_19945 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH92_19945 PF06827 Zinc finger found in FPG and IleRS CH92_19955 PF01965 DJ-1/PfpI family CH92_19960 PF10672 S-adenosylmethionine-dependent methyltransferase CH92_19960 PF17785 PUA-like domain CH92_19970 PF12833 Helix-turn-helix domain CH92_19970 PF12852 Cupin CH92_19975 PF08479 POTRA domain, ShlB-type CH92_19975 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH92_19980 PF05860 haemagglutination activity domain CH92_19990 PF00920 Dehydratase family CH92_20000 PF00860 Permease family CH92_20010 PF00860 Permease family CH92_20015 PF01266 FAD dependent oxidoreductase CH92_20030 PF00186 Dihydrofolate reductase CH92_20035 PF03009 Glycerophosphoryl diester phosphodiesterase family CH92_20040 PF02515 CoA-transferase family III CH92_20045 PF03401 Tripartite tricarboxylate transporter family receptor CH92_20055 PF01970 Tripartite tricarboxylate transporter TctA family CH92_20080 PF03466 LysR substrate binding domain CH92_20080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_20085 PF01895 PhoU domain CH92_20090 PF00005 ABC transporter CH92_20095 PF00528 Binding-protein-dependent transport system inner membrane component CH92_20100 PF00528 Binding-protein-dependent transport system inner membrane component CH92_20105 PF12849 PBP superfamily domain CH92_20110 PF03061 Thioesterase superfamily CH92_20115 PF01590 GAF domain CH92_20115 PF00563 EAL domain CH92_20115 PF00360 Phytochrome region CH92_20115 PF00990 Diguanylate cyclase, GGDEF domain CH92_20135 PF13538 UvrD-like helicase C-terminal domain CH92_20150 PF02690 Na+/Pi-cotransporter CH92_20160 PF16868 NMT1-like family CH92_20165 PF00990 Diguanylate cyclase, GGDEF domain CH92_20165 PF00072 Response regulator receiver domain CH92_20170 PF00512 His Kinase A (phospho-acceptor) domain CH92_20170 PF08521 Two-component sensor kinase N-terminal CH92_20170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20175 PF00486 Transcriptional regulatory protein, C terminal CH92_20175 PF00072 Response regulator receiver domain CH92_20180 PF03573 outer membrane porin, OprD family CH92_20195 PF01970 Tripartite tricarboxylate transporter TctA family CH92_20205 PF07670 Nucleoside recognition CH92_20225 PF02954 Bacterial regulatory protein, Fis family CH92_20225 PF00072 Response regulator receiver domain CH92_20225 PF00158 Sigma-54 interaction domain CH92_20230 PF08448 PAS fold CH92_20230 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB CH92_20230 PF00512 His Kinase A (phospho-acceptor) domain CH92_20230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20230 PF00672 HAMP domain CH92_20240 PF01510 N-acetylmuramoyl-L-alanine amidase CH92_20245 PF00072 Response regulator receiver domain CH92_20245 PF00990 Diguanylate cyclase, GGDEF domain CH92_20255 PF01323 DSBA-like thioredoxin domain CH92_20260 PF00034 Cytochrome c CH92_20265 PF01926 50S ribosome-binding GTPase CH92_20270 PF02347 Glycine cleavage system P-protein CH92_20275 PF01597 Glycine cleavage H-protein CH92_20280 PF01571 Aminomethyltransferase folate-binding domain CH92_20280 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH92_20285 PF00528 Binding-protein-dependent transport system inner membrane component CH92_20300 PF01494 FAD binding domain CH92_20305 PF01494 FAD binding domain CH92_20310 PF00557 Metallopeptidase family M24 CH92_20310 PF05195 Aminopeptidase P, N-terminal domain CH92_20315 PF03695 Uncharacterised protein family (UPF0149) CH92_20325 PF05164 Cell division protein ZapA CH92_20330 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH92_20350 PF08240 Alcohol dehydrogenase GroES-like domain CH92_20350 PF00107 Zinc-binding dehydrogenase CH92_20355 PF02556 Preprotein translocase subunit SecB CH92_20360 PF00462 Glutaredoxin CH92_20370 PF01676 Metalloenzyme superfamily CH92_20370 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH92_20375 PF01551 Peptidase family M23 CH92_20380 PF13180 PDZ domain CH92_20380 PF03572 Peptidase family S41 CH92_20385 PF04748 Divergent polysaccharide deacetylase CH92_20400 PF00977 Histidine biosynthesis protein CH92_20405 PF00977 Histidine biosynthesis protein CH92_20415 PF00117 Glutamine amidotransferase class-I CH92_20420 PF00475 Imidazoleglycerol-phosphate dehydratase CH92_20435 PF14815 NUDIX domain CH92_20435 PF00730 HhH-GPD superfamily base excision DNA repair protein CH92_20435 PF10576 Iron-sulfur binding domain of endonuclease III CH92_20435 PF00633 Helix-hairpin-helix motif CH92_20440 PF04362 Bacterial Fe(2+) trafficking CH92_20450 PF02384 N-6 DNA Methylase CH92_20450 PF12161 HsdM N-terminal domain CH92_20455 PF01420 Type I restriction modification DNA specificity domain CH92_20465 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CH92_20465 PF08463 EcoEI R protein C-terminal CH92_20465 PF00271 Helicase conserved C-terminal domain CH92_20465 PF04851 Type III restriction enzyme, res subunit CH92_20475 PF02028 BCCT, betaine/carnitine/choline family transporter CH92_20480 PF00005 ABC transporter CH92_20485 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH92_20490 PF00528 Binding-protein-dependent transport system inner membrane component CH92_20495 PF00528 Binding-protein-dependent transport system inner membrane component CH92_20500 PF01263 Aldose 1-epimerase CH92_20525 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH92_20525 PF02222 ATP-grasp domain CH92_20530 PF00731 AIR carboxylase CH92_20535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_20535 PF03466 LysR substrate binding domain CH92_20545 PF10415 Fumarase C C-terminus CH92_20545 PF00206 Lyase CH92_20560 PF01235 Sodium:alanine symporter family CH92_20565 PF00710 Asparaginase, N-terminal CH92_20565 PF17763 Glutaminase/Asparaginase C-terminal domain CH92_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20570 PF00512 His Kinase A (phospho-acceptor) domain CH92_20575 PF00459 Inositol monophosphatase family CH92_20580 PF00293 NUDIX domain CH92_20585 PF13419 Haloacid dehalogenase-like hydrolase CH92_20590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20590 PF00512 His Kinase A (phospho-acceptor) domain CH92_20590 PF00072 Response regulator receiver domain CH92_20590 PF08448 PAS fold CH92_20590 PF13188 PAS domain CH92_20595 PF02634 FdhD/NarQ family CH92_20605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_20605 PF01568 Molydopterin dinucleotide binding domain CH92_20605 PF00384 Molybdopterin oxidoreductase CH92_20605 PF12838 4Fe-4S dicluster domain CH92_20605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH92_20610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH92_20610 PF00037 4Fe-4S binding domain CH92_20610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH92_20620 PF12728 Helix-turn-helix domain CH92_20620 PF12727 PBP superfamily domain CH92_20635 PF03061 Thioesterase superfamily CH92_20640 PF00465 Iron-containing alcohol dehydrogenase CH92_20645 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_20645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_20645 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_20645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_20650 PF00378 Enoyl-CoA hydratase/isomerase CH92_20650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_20650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_20655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_20655 PF03466 LysR substrate binding domain CH92_20660 PF00313 'Cold-shock' DNA-binding domain CH92_20665 PF00989 PAS fold CH92_20665 PF00512 His Kinase A (phospho-acceptor) domain CH92_20665 PF18698 Histidine kinase sensor domain CH92_20665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20665 PF00672 HAMP domain CH92_20680 PF01134 Glucose inhibited division protein A CH92_20680 PF13932 GidA associated domain CH92_20690 PF00248 Aldo/keto reductase family CH92_20700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_20700 PF00672 HAMP domain CH92_20705 PF00570 HRDC domain CH92_20705 PF00271 Helicase conserved C-terminal domain CH92_20705 PF09382 RQC domain CH92_20705 PF16124 RecQ zinc-binding CH92_20705 PF00270 DEAD/DEAH box helicase CH92_20720 PF00881 Nitroreductase family CH92_20730 PF01293 Phosphoenolpyruvate carboxykinase CH92_20735 PF01430 Hsp33 protein CH92_20740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH92_20740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH92_20740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH92_20745 PF01370 NAD dependent epimerase/dehydratase family CH92_20750 PF02397 Bacterial sugar transferase CH92_20780 PF00535 Glycosyl transferase family 2 CH92_20790 PF01522 Polysaccharide deacetylase CH92_20820 PF01479 S4 domain CH92_20825 PF08443 RimK-like ATP-grasp domain CH92_20825 PF18030 RimK PreATP-grasp domain CH92_20830 PF18030 RimK PreATP-grasp domain CH92_20830 PF08443 RimK-like ATP-grasp domain CH92_20835 PF00672 HAMP domain CH92_20835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20835 PF00512 His Kinase A (phospho-acceptor) domain CH92_20840 PF00072 Response regulator receiver domain CH92_20840 PF00486 Transcriptional regulatory protein, C terminal CH92_20845 PF00575 S1 RNA binding domain CH92_20845 PF17674 HHH domain CH92_20845 PF09371 Tex-like protein N-terminal domain CH92_20845 PF16921 Tex protein YqgF-like domain CH92_20855 PF04262 Glutamate-cysteine ligase CH92_20865 PF00583 Acetyltransferase (GNAT) family CH92_20865 PF00696 Amino acid kinase family CH92_20870 PF01546 Peptidase family M20/M25/M40 CH92_20870 PF07687 Peptidase dimerisation domain CH92_20875 PF01384 Phosphate transporter family CH92_20880 PF01865 Protein of unknown function DUF47 CH92_20890 PF00437 Type II/IV secretion system protein CH92_20905 PF13188 PAS domain CH92_20905 PF08448 PAS fold CH92_20905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_20905 PF00072 Response regulator receiver domain CH92_20905 PF00512 His Kinase A (phospho-acceptor) domain CH92_20915 PF02566 OsmC-like protein CH92_20920 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_20930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_20955 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CH92_20975 PF09335 SNARE associated Golgi protein CH92_20995 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH92_21015 PF02405 Permease MlaE CH92_21020 PF00005 ABC transporter CH92_21025 PF03886 ABC-type transport auxiliary lipoprotein component CH92_21025 PF02470 MlaD protein CH92_21040 PF16363 GDP-mannose 4,6 dehydratase CH92_21045 PF00483 Nucleotidyl transferase CH92_21050 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CH92_21055 PF04321 RmlD substrate binding domain CH92_21060 PF02743 Cache domain CH92_21060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_21060 PF00512 His Kinase A (phospho-acceptor) domain CH92_21065 PF00072 Response regulator receiver domain CH92_21065 PF02954 Bacterial regulatory protein, Fis family CH92_21065 PF00158 Sigma-54 interaction domain CH92_21070 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_21075 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CH92_21080 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_21105 PF00528 Binding-protein-dependent transport system inner membrane component CH92_21110 PF00528 Binding-protein-dependent transport system inner membrane component CH92_21115 PF00005 ABC transporter CH92_21115 PF08402 TOBE domain CH92_21120 PF13416 Bacterial extracellular solute-binding protein CH92_21125 PF13416 Bacterial extracellular solute-binding protein CH92_21130 PF00202 Aminotransferase class-III CH92_21135 PF00120 Glutamine synthetase, catalytic domain CH92_21140 PF07722 Peptidase C26 CH92_21145 PF00120 Glutamine synthetase, catalytic domain CH92_21165 PF00795 Carbon-nitrogen hydrolase CH92_21170 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH92_21175 PF00990 Diguanylate cyclase, GGDEF domain CH92_21175 PF07694 5TMR of 5TMR-LYT CH92_21185 PF00072 Response regulator receiver domain CH92_21185 PF00486 Transcriptional regulatory protein, C terminal CH92_21190 PF00672 HAMP domain CH92_21190 PF00512 His Kinase A (phospho-acceptor) domain CH92_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_21190 PF00989 PAS fold CH92_21190 PF18698 Histidine kinase sensor domain CH92_21195 PF00072 Response regulator receiver domain CH92_21200 PF00072 Response regulator receiver domain CH92_21200 PF00990 Diguanylate cyclase, GGDEF domain CH92_21205 PF00989 PAS fold CH92_21205 PF16736 Single Cache-like CH92_21205 PF00512 His Kinase A (phospho-acceptor) domain CH92_21205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_21210 PF00072 Response regulator receiver domain CH92_21210 PF00486 Transcriptional regulatory protein, C terminal CH92_21225 PF00535 Glycosyl transferase family 2 CH92_21230 PF00171 Aldehyde dehydrogenase family CH92_21235 PF00202 Aminotransferase class-III CH92_21240 PF00471 Ribosomal protein L33 CH92_21245 PF00830 Ribosomal L28 family CH92_21250 PF09339 IclR helix-turn-helix domain CH92_21265 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_21265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_21265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_21270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_21270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_21270 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_21275 PF00378 Enoyl-CoA hydratase/isomerase CH92_21275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH92_21275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH92_21280 PF00171 Aldehyde dehydrogenase family CH92_21295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_21295 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_21295 PF12806 Acetyl-CoA dehydrogenase C-terminal like CH92_21295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_21300 PF17932 Tetracyclin repressor-like, C-terminal domain CH92_21300 PF00440 Bacterial regulatory proteins, tetR family CH92_21305 PF03328 HpcH/HpaI aldolase/citrate lyase family CH92_21315 PF00392 Bacterial regulatory proteins, gntR family CH92_21315 PF07702 UTRA domain CH92_21320 PF02515 CoA-transferase family III CH92_21325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH92_21325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH92_21325 PF02770 Acyl-CoA dehydrogenase, middle domain CH92_21335 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_21360 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH92_21365 PF17853 GGDEF-like domain CH92_21365 PF13556 PucR C-terminal helix-turn-helix domain CH92_21365 PF05651 Putative sugar diacid recognition CH92_21370 PF07969 Amidohydrolase family CH92_21390 PF02608 ABC transporter substrate-binding protein PnrA-like CH92_21405 PF00857 Isochorismatase family CH92_21410 PF00440 Bacterial regulatory proteins, tetR family CH92_21410 PF08362 YcdC-like protein, C-terminal region CH92_21415 PF00296 Luciferase-like monooxygenase CH92_21420 PF00857 Isochorismatase family CH92_21425 PF01042 Endoribonuclease L-PSP CH92_21430 PF00561 alpha/beta hydrolase fold CH92_21435 PF00881 Nitroreductase family CH92_21440 PF01613 Flavin reductase like domain CH92_21445 PF08000 Bacterial PH domain CH92_21460 PF01070 FMN-dependent dehydrogenase CH92_21465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH92_21465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH92_21475 PF01970 Tripartite tricarboxylate transporter TctA family CH92_21490 PF13378 Enolase C-terminal domain-like CH92_21490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH92_21495 PF00356 Bacterial regulatory proteins, lacI family CH92_21500 PF00920 Dehydratase family CH92_21505 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH92_21510 PF00144 Beta-lactamase CH92_21520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH92_21520 PF03466 LysR substrate binding domain CH92_21525 PF03480 Bacterial extracellular solute-binding protein, family 7 CH92_21535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH92_21540 PF00698 Acyl transferase domain CH92_21545 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CH92_21555 PF01039 Carboxyl transferase domain CH92_21560 PF06857 Malonate decarboxylase delta subunit (MdcD) CH92_21565 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH92_21570 PF16957 Malonate decarboxylase, alpha subunit, transporter CH92_21575 PF09335 SNARE associated Golgi protein CH92_21590 PF16868 NMT1-like family CH92_21610 PF07715 TonB-dependent Receptor Plug Domain CH92_21610 PF00593 TonB dependent receptor CH92_21615 PF16220 Domain of unknown function (DUF4880) CH92_21615 PF04773 FecR protein CH92_21620 PF08281 Sigma-70, region 4 CH92_21620 PF04542 Sigma-70 region 2 CH92_21625 PF12276 Protein of unknown function (DUF3617) CH92_21635 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH92_21635 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH92_21650 PF08446 PAS fold CH92_21650 PF00512 His Kinase A (phospho-acceptor) domain CH92_21650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_21650 PF01590 GAF domain CH92_21650 PF00360 Phytochrome region CH92_21655 PF00072 Response regulator receiver domain CH92_21660 PF13426 PAS domain CH92_21660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH92_21660 PF00072 Response regulator receiver domain CH92_21690 PF00009 Elongation factor Tu GTP binding domain CH92_21700 PF00593 TonB dependent receptor CH92_21700 PF07715 TonB-dependent Receptor Plug Domain CH92_21710 PF04542 Sigma-70 region 2 CH92_21710 PF08281 Sigma-70, region 4 CH92_21745 PF13936 Helix-turn-helix domain CH92_21745 PF00665 Integrase core domain CH92_21755 PF03793 PASTA domain CH92_21755 PF00069 Protein kinase domain CH92_21780 PF04851 Type III restriction enzyme, res subunit CH92_21780 PF00271 Helicase conserved C-terminal domain CH92_21800 PF15978 Tn7-like transposition protein D CH92_21800 PF06527 TniQ CH92_21805 PF11426 Tn7 transposition regulator TnsC CH92_21805 PF13401 AAA domain CH92_21810 PF00665 Integrase core domain CH92_21815 PF08721 TnsA endonuclease C terminal CH92_21815 PF08722 TnsA endonuclease N terminal CH92_21820 PF01380 SIS domain CH92_21825 PF00455 DeoR C terminal sensor domain CH92_21825 PF08220 DeoR-like helix-turn-helix domain CH92_21830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH92_21830 PF00672 HAMP domain CH92_21835 PF12804 MobA-like NTP transferase domain CH92_21835 PF14602 Hexapeptide repeat of succinyl-transferase CH92_21835 PF00132 Bacterial transferase hexapeptide (six repeats) CH92_21840 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH92_21840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH92_21845 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH92_21845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH92_21850 PF00231 ATP synthase CH92_21855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH92_21855 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH92_21855 PF00306 ATP synthase alpha/beta chain, C terminal domain CH92_21860 PF00213 ATP synthase delta (OSCP) subunit CH92_21865 PF00430 ATP synthase B/B' CF(0) CH92_21870 PF00137 ATP synthase subunit C CH92_21875 PF00119 ATP synthase A chain CH92_21880 PF03899 ATP synthase I chain CH92_21885 PF17762 HTH domain found in ParB protein CH92_21885 PF02195 ParB-like nuclease domain CH92_21890 PF13614 AAA domain CH92_21895 PF02527 rRNA small subunit methyltransferase G CH92_21900 PF01134 Glucose inhibited division protein A CH92_21900 PF13932 GidA associated domain CH92_21905 PF12631 MnmE helical domain CH92_21905 PF10396 GTP-binding protein TrmE N-terminus CH92_21905 PF01926 50S ribosome-binding GTPase CH92_21910 PF02096 60Kd inner membrane protein CH92_21910 PF14849 YidC periplasmic domain CH92_21915 PF01809 Putative membrane protein insertion efficiency factor CH92_21920 PF00825 Ribonuclease P CH92_21925 PF00468 Ribosomal protein L34