CH92_00005 SM00382 ATPases associated with a variety of cellular activities CH92_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CH92_00010 SM00480 DNA polymerase III beta subunit CH92_00020 SM00387 Histidine kinase-like ATPases CH92_00020 SM00433 TopoisomeraseII CH92_00030 SM00563 Phosphate acyltransferases CH92_00070 SM00382 ATPases associated with a variety of cellular activities CH92_00085 SM00062 Bacterial periplasmic substrate-binding proteins CH92_00090 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_00115 SM00344 helix_turn_helix ASNC type CH92_00170 SM00829 Enoylreductase CH92_00210 SM00829 Enoylreductase CH92_00225 SM00091 PAS domain CH92_00225 SM00387 Histidine kinase-like ATPases CH92_00225 SM00388 His Kinase A (phosphoacceptor) domain CH92_00225 SM00448 cheY-homologous receiver domain CH92_00245 SM00869 Autotransporter beta-domain CH92_00270 SM00342 helix_turn_helix, arabinose operon control protein CH92_00290 SM00382 ATPases associated with a variety of cellular activities CH92_00345 SM00530 Helix-turn-helix XRE-family like proteins CH92_00395 SM00382 ATPases associated with a variety of cellular activities CH92_00460 SM00342 helix_turn_helix, arabinose operon control protein CH92_00490 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_00495 SM00947 Carbonic anhydrase CH92_00580 SM00382 ATPases associated with a variety of cellular activities CH92_00615 SM00382 ATPases associated with a variety of cellular activities CH92_00615 SM00930 CH92_00615 CH92_00620 SM01060 CH92_00620 CH92_00635 SM00382 ATPases associated with a variety of cellular activities CH92_00675 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH92_00675 SM00474 3'-5' exonuclease CH92_00675 SM00475 5'-3' exonuclease CH92_00675 SM00482 DNA polymerase A domain CH92_00725 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH92_00725 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH92_00730 SM00382 ATPases associated with a variety of cellular activities CH92_00780 SM00487 DEAD-like helicases superfamily CH92_00780 SM00490 helicase superfamily c-terminal domain CH92_00820 SM01236 CH92_00820 CH92_00845 SM00091 PAS domain CH92_00845 SM00387 Histidine kinase-like ATPases CH92_00845 SM00448 cheY-homologous receiver domain CH92_00870 SM00382 ATPases associated with a variety of cellular activities CH92_00870 SM00448 cheY-homologous receiver domain CH92_00920 SM00978 CH92_00920 CH92_00940 SM00052 Putative diguanylate phosphodiesterase CH92_00940 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_00940 SM00091 PAS domain CH92_00940 SM00267 diguanylate cyclase CH92_01020 SM01130 CH92_01020 CH92_01030 SM00382 ATPases associated with a variety of cellular activities CH92_01050 SM00062 Bacterial periplasmic substrate-binding proteins CH92_01055 SM00342 helix_turn_helix, arabinose operon control protein CH92_01080 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_01080 SM00895 CH92_01080 CH92_01090 SM00878 Biotin carboxylase C-terminal domain CH92_01115 SM00947 Carbonic anhydrase CH92_01235 SM00382 ATPases associated with a variety of cellular activities CH92_01235 SM01086 C-terminal, D2-small domain, of ClpB protein CH92_01255 SM00382 ATPases associated with a variety of cellular activities CH92_01255 SM00448 cheY-homologous receiver domain CH92_01260 SM00091 PAS domain CH92_01260 SM00387 Histidine kinase-like ATPases CH92_01260 SM00388 His Kinase A (phosphoacceptor) domain CH92_01275 SM01230 CH92_01275 CH92_01280 SM00981 CH92_01280 CH92_01290 SM00421 helix_turn_helix, Lux Regulon CH92_01290 SM00448 cheY-homologous receiver domain CH92_01295 SM00387 Histidine kinase-like ATPases CH92_01295 SM00388 His Kinase A (phosphoacceptor) domain CH92_01295 SM00448 cheY-homologous receiver domain CH92_01335 SM00091 PAS domain CH92_01335 SM00387 Histidine kinase-like ATPases CH92_01340 SM00448 cheY-homologous receiver domain CH92_01345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_01345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_01380 SM00342 helix_turn_helix, arabinose operon control protein CH92_01420 SM00267 diguanylate cyclase CH92_01435 SM01057 Eukaryotic-type carbonic anhydrase CH92_01465 SM00382 ATPases associated with a variety of cellular activities CH92_01465 SM00448 cheY-homologous receiver domain CH92_01470 SM00052 Putative diguanylate phosphodiesterase CH92_01470 SM00267 diguanylate cyclase CH92_01505 SM00563 Phosphate acyltransferases CH92_01570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_01620 SM00421 helix_turn_helix, Lux Regulon CH92_01695 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_01735 SM00382 ATPases associated with a variety of cellular activities CH92_01740 SM00382 ATPases associated with a variety of cellular activities CH92_01750 SM00448 cheY-homologous receiver domain CH92_01765 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_01765 SM01091 Transporter associated domain CH92_01770 SM00091 PAS domain CH92_01770 SM00387 Histidine kinase-like ATPases CH92_01770 SM00388 His Kinase A (phosphoacceptor) domain CH92_01775 SM00448 cheY-homologous receiver domain CH92_01775 SM00862 Transcriptional regulatory protein, C terminal CH92_01790 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_01790 SM00895 CH92_01790 CH92_01835 SM00411 bacterial (prokaryotic) histone like domain CH92_01855 SM00448 cheY-homologous receiver domain CH92_01855 SM00862 Transcriptional regulatory protein, C terminal CH92_01860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_01860 SM00387 Histidine kinase-like ATPases CH92_01860 SM00388 His Kinase A (phosphoacceptor) domain CH92_01900 SM00382 ATPases associated with a variety of cellular activities CH92_01905 SM00062 Bacterial periplasmic substrate-binding proteins CH92_01940 SM00567 E-Z type HEAT repeats CH92_01955 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_01955 SM00866 CH92_01955 CH92_01960 SM00382 ATPases associated with a variety of cellular activities CH92_01980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_01980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_01995 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CH92_01995 SM01080 CH92_01995 CH92_02005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_02005 SM00954 Region found in RelA / SpoT proteins CH92_02010 SM01409 CH92_02010 CH92_02015 SM00072 Guanylate kinase homologues. CH92_02090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_02105 SM00155 Phospholipase D. Active site motifs. CH92_02115 SM00344 helix_turn_helix ASNC type CH92_02130 SM00530 Helix-turn-helix XRE-family like proteins CH92_02140 SM00835 Cupin CH92_02160 SM00642 Alpha-amylase domain CH92_02165 SM00642 Alpha-amylase domain CH92_02170 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_02190 SM00346 helix_turn_helix isocitrate lyase regulation CH92_02200 SM00052 Putative diguanylate phosphodiesterase CH92_02200 SM00267 diguanylate cyclase CH92_02210 SM00382 ATPases associated with a variety of cellular activities CH92_02220 SM00938 Nitrogen regulatory protein P-II CH92_02275 SM01219 CH92_02275 CH92_02325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_02325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_02335 SM00448 cheY-homologous receiver domain CH92_02335 SM00850 LytTr DNA-binding domain CH92_02380 SM00382 ATPases associated with a variety of cellular activities CH92_02415 SM01004 Delta-aminolevulinic acid dehydratase CH92_02435 SM00357 Cold shock protein domain CH92_02435 SM00382 ATPases associated with a variety of cellular activities CH92_02435 SM00959 Rho termination factor, N-terminal domain CH92_02455 SM00836 DALR anticodon binding domain CH92_02455 SM01016 Arginyl tRNA synthetase N terminal dom CH92_02460 SM00487 DEAD-like helicases superfamily CH92_02460 SM00490 helicase superfamily c-terminal domain CH92_02470 SM00318 Staphylococcal nuclease homologues CH92_02475 SM00919 Malic enzyme, NAD binding domain CH92_02475 SM01274 CH92_02475 CH92_02485 SM00842 Cell division protein FtsA CH92_02505 SM00965 Secretin and TonB N terminus short domain CH92_02550 SM00825 Beta-ketoacyl synthase CH92_02555 SM00822 CH92_02555 CH92_02565 SM00825 Beta-ketoacyl synthase CH92_02630 SM00563 Phosphate acyltransferases CH92_02705 SM00530 Helix-turn-helix XRE-family like proteins CH92_02720 SM00400 zinc finger CH92_02720 SM00493 CH92_02720 CH92_02720 SM00766 DNA primase DnaG DnaB-binding CH92_02735 SM01207 CH92_02735 CH92_02740 SM00905 Dihydroneopterin aldolase CH92_02765 SM00763 PrkA AAA domain CH92_02770 SM00450 Rhodanese Homology Domain CH92_02785 SM00650 Ribosomal RNA adenine dimethylases CH92_02815 SM00271 DnaJ molecular chaperone homology domain CH92_02825 SM00062 Bacterial periplasmic substrate-binding proteins CH92_02825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_02825 SM00091 PAS domain CH92_02825 SM00387 Histidine kinase-like ATPases CH92_02830 SM00421 helix_turn_helix, Lux Regulon CH92_02830 SM00448 cheY-homologous receiver domain CH92_02835 SM00382 ATPases associated with a variety of cellular activities CH92_02890 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_02890 SM00419 helix_turn_helix, cAMP Regulatory protein CH92_02915 SM00382 ATPases associated with a variety of cellular activities CH92_02935 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH92_03030 SM00220 Serine/Threonine protein kinases, catalytic domain CH92_03035 SM00331 Sigma factor PP2C-like phosphatases CH92_03035 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CH92_03090 SM00382 ATPases associated with a variety of cellular activities CH92_03095 SM00382 ATPases associated with a variety of cellular activities CH92_03095 SM01086 C-terminal, D2-small domain, of ClpB protein CH92_03210 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH92_03210 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH92_03215 SM00649 Ribosomal protein L11/L12 CH92_03240 SM00663 RNA polymerase I subunit A N-terminus CH92_03255 SM00838 Elongation factor G C-terminus CH92_03255 SM00889 Elongation factor G, domain IV CH92_03265 SM01403 CH92_03265 CH92_03285 SM01382 CH92_03285 CH92_03285 SM01383 CH92_03285 CH92_03300 SM00322 K homology RNA-binding domain CH92_03320 SM01374 CH92_03320 CH92_03325 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH92_03390 SM00363 S4 RNA-binding domain CH92_03390 SM01390 CH92_03390 CH92_03395 SM00662 RNA polymerases D CH92_03405 SM01060 CH92_03405 CH92_03430 SM00822 CH92_03430 CH92_03480 SM00382 ATPases associated with a variety of cellular activities CH92_03505 SM00448 cheY-homologous receiver domain CH92_03505 SM00862 Transcriptional regulatory protein, C terminal CH92_03560 SM01092 CO dehydrogenase flavoprotein C-terminal domain CH92_03565 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_03580 SM00422 helix_turn_helix, mercury resistance CH92_03645 SM00382 ATPases associated with a variety of cellular activities CH92_03660 SM00342 helix_turn_helix, arabinose operon control protein CH92_03670 SM00893 Electron transfer flavoprotein domain CH92_03680 SM00893 Electron transfer flavoprotein domain CH92_03695 SM00989 CH92_03695 CH92_03705 SM00342 helix_turn_helix, arabinose operon control protein CH92_03785 SM00267 diguanylate cyclase CH92_03800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_03800 SM00331 Sigma factor PP2C-like phosphatases CH92_03805 SM00382 ATPases associated with a variety of cellular activities CH92_03810 SM00052 Putative diguanylate phosphodiesterase CH92_03810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_03810 SM00091 PAS domain CH92_03810 SM00267 diguanylate cyclase CH92_03820 SM00387 Histidine kinase-like ATPases CH92_03820 SM01049 CH92_03820 CH92_03825 SM00421 helix_turn_helix, Lux Regulon CH92_03825 SM00448 cheY-homologous receiver domain CH92_03840 SM00382 ATPases associated with a variety of cellular activities CH92_03910 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH92_03930 SM00904 Riboflavin kinase CH92_04005 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH92_04005 SM01232 CH92_04005 CH92_04015 SM00072 Guanylate kinase homologues. CH92_04020 SM00344 helix_turn_helix ASNC type CH92_04030 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH92_04055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_04055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_04065 SM00052 Putative diguanylate phosphodiesterase CH92_04070 SM00822 CH92_04070 CH92_04090 SM00091 PAS domain CH92_04090 SM00382 ATPases associated with a variety of cellular activities CH92_04095 SM00091 PAS domain CH92_04095 SM00138 Methyltransferase, chemotaxis proteins CH92_04095 SM00387 Histidine kinase-like ATPases CH92_04095 SM00388 His Kinase A (phosphoacceptor) domain CH92_04095 SM00448 cheY-homologous receiver domain CH92_04125 SM00479 CH92_04125 CH92_04130 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_04130 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_04175 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_04180 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_04200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_04200 SM00382 ATPases associated with a variety of cellular activities CH92_04250 SM00342 helix_turn_helix, arabinose operon control protein CH92_04255 SM00028 Tetratricopeptide repeats CH92_04340 SM01049 CH92_04340 CH92_04360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_04360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_04360 SM01358 CH92_04360 CH92_04410 SM01130 CH92_04410 CH92_04460 SM00342 helix_turn_helix, arabinose operon control protein CH92_04505 SM00849 Metallo-beta-lactamase superfamily CH92_04555 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_04555 SM00895 CH92_04555 CH92_04600 SM00271 DnaJ molecular chaperone homology domain CH92_04610 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH92_04615 SM00851 MGS-like domain CH92_04615 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH92_04630 SM01103 CH92_04630 CH92_04640 SM00382 ATPases associated with a variety of cellular activities CH92_04680 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_04700 SM01387 CH92_04700 CH92_04705 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_04705 SM00322 K homology RNA-binding domain CH92_04710 SM00749 bacterial OsmY and nodulation domain CH92_04770 SM00382 ATPases associated with a variety of cellular activities CH92_04770 SM00448 cheY-homologous receiver domain CH92_04775 SM00091 PAS domain CH92_04775 SM00387 Histidine kinase-like ATPases CH92_04775 SM00388 His Kinase A (phosphoacceptor) domain CH92_04835 SM00822 CH92_04835 CH92_04930 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_04930 SM00091 PAS domain CH92_04930 SM00387 Histidine kinase-like ATPases CH92_04930 SM00388 His Kinase A (phosphoacceptor) domain CH92_04930 SM00448 cheY-homologous receiver domain CH92_04935 SM00849 Metallo-beta-lactamase superfamily CH92_04945 SM00091 PAS domain CH92_04945 SM00387 Histidine kinase-like ATPases CH92_04945 SM00388 His Kinase A (phosphoacceptor) domain CH92_04945 SM00448 cheY-homologous receiver domain CH92_04945 SM01079 CH92_04945 CH92_04950 SM00052 Putative diguanylate phosphodiesterase CH92_04950 SM00091 PAS domain CH92_04950 SM00267 diguanylate cyclase CH92_04950 SM00448 cheY-homologous receiver domain CH92_04955 SM00563 Phosphate acyltransferases CH92_05015 SM00905 Dihydroneopterin aldolase CH92_05040 SM00563 Phosphate acyltransferases CH92_05075 SM00267 diguanylate cyclase CH92_05110 SM00382 ATPases associated with a variety of cellular activities CH92_05140 SM00479 CH92_05140 CH92_05185 SM00670 Large family of predicted nucleotide-binding domains CH92_05205 SM00487 DEAD-like helicases superfamily CH92_05205 SM00490 helicase superfamily c-terminal domain CH92_05210 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_05210 SM00267 diguanylate cyclase CH92_05220 SM00062 Bacterial periplasmic substrate-binding proteins CH92_05235 SM00382 ATPases associated with a variety of cellular activities CH92_05240 SM01211 CH92_05240 CH92_05255 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_05290 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_05290 SM01091 Transporter associated domain CH92_05300 SM00382 ATPases associated with a variety of cellular activities CH92_05300 SM00962 SRP54-type protein, GTPase domain CH92_05300 SM00963 SRP54-type protein, helical bundle domain CH92_05350 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_05350 SM00895 CH92_05350 CH92_05395 SM00479 CH92_05395 CH92_05445 SM00478 endonuclease III CH92_05445 SM00525 CH92_05445 CH92_05455 SM00900 CH92_05455 CH92_05495 SM00986 Uracil DNA glycosylase superfamily CH92_05495 SM00987 UreE urease accessory protein, C-terminal domain CH92_05550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_05570 SM00358 Double-stranded RNA binding motif CH92_05570 SM00535 Ribonuclease III family CH92_05620 SM00382 ATPases associated with a variety of cellular activities CH92_05620 SM00464 Found in ATP-dependent protease La (LON) CH92_05625 SM00342 helix_turn_helix, arabinose operon control protein CH92_05705 SM00363 S4 RNA-binding domain CH92_05720 SM00357 Cold shock protein domain CH92_05755 SM00869 Autotransporter beta-domain CH92_05820 SM00095 Transthyretin CH92_05830 SM00448 cheY-homologous receiver domain CH92_05830 SM00862 Transcriptional regulatory protein, C terminal CH92_05835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_05835 SM00387 Histidine kinase-like ATPases CH92_05835 SM00388 His Kinase A (phosphoacceptor) domain CH92_05845 SM00052 Putative diguanylate phosphodiesterase CH92_05845 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_05880 SM00342 helix_turn_helix, arabinose operon control protein CH92_05895 SM00387 Histidine kinase-like ATPases CH92_05895 SM00388 His Kinase A (phosphoacceptor) domain CH92_05895 SM00448 cheY-homologous receiver domain CH92_05900 SM00382 ATPases associated with a variety of cellular activities CH92_05925 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH92_05925 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH92_05925 SM00493 CH92_05925 CH92_05935 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_05935 SM00091 PAS domain CH92_05935 SM00387 Histidine kinase-like ATPases CH92_05935 SM00388 His Kinase A (phosphoacceptor) domain CH92_05935 SM00448 cheY-homologous receiver domain CH92_05965 SM00421 helix_turn_helix, Lux Regulon CH92_05985 SM00822 CH92_05985 CH92_06005 SM00363 S4 RNA-binding domain CH92_06020 SM00564 beta-propeller repeat CH92_06030 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH92_06050 SM00984 UDP binding domain CH92_06195 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH92_06195 SM00534 ATPase domain of DNA mismatch repair MUTS family CH92_06210 SM00382 ATPases associated with a variety of cellular activities CH92_06235 SM01144 CH92_06235 CH92_06245 SM00421 helix_turn_helix, Lux Regulon CH92_06245 SM00448 cheY-homologous receiver domain CH92_06280 SM00491 CH92_06280 CH92_06340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_06385 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_06395 SM00935 Outer membrane protein (OmpH-like) CH92_06425 SM00481 DNA polymerase alpha chain like domain CH92_06435 SM00977 TilS substrate C-terminal domain CH92_06450 SM01192 CH92_06450 CH92_06450 SM01193 CH92_06450 CH92_06480 SM00829 Enoylreductase CH92_06495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH92_06525 SM00257 Lysin motif CH92_06575 SM00507 HNH nucleases CH92_06595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_06595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_06595 SM01358 CH92_06595 CH92_06600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_06660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_06700 SM00487 DEAD-like helicases superfamily CH92_06700 SM00490 helicase superfamily c-terminal domain CH92_06705 SM00487 DEAD-like helicases superfamily CH92_06705 SM00490 helicase superfamily c-terminal domain CH92_06705 SM00982 CH92_06705 CH92_06705 SM01058 CarD-like/TRCF domain CH92_06710 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_06725 SM00900 CH92_06725 CH92_06780 SM00382 ATPases associated with a variety of cellular activities CH92_06795 SM00849 Metallo-beta-lactamase superfamily CH92_06825 SM00226 Low molecular weight phosphatase family CH92_06845 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_06850 SM00363 S4 RNA-binding domain CH92_06885 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH92_06890 SM00822 CH92_06890 CH92_06900 SM00825 Beta-ketoacyl synthase CH92_07110 SM00357 Cold shock protein domain CH92_07135 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH92_07140 SM00382 ATPases associated with a variety of cellular activities CH92_07230 SM01130 CH92_07230 CH92_07275 SM00342 helix_turn_helix, arabinose operon control protein CH92_07280 SM00267 diguanylate cyclase CH92_07355 SM00671 Sel1-like repeats. CH92_07365 SM00387 Histidine kinase-like ATPases CH92_07365 SM00388 His Kinase A (phosphoacceptor) domain CH92_07365 SM00448 cheY-homologous receiver domain CH92_07385 SM00563 Phosphate acyltransferases CH92_07430 SM00998 Adenylosuccinate lyase C-terminus CH92_07445 SM00642 Alpha-amylase domain CH92_07465 SM00028 Tetratricopeptide repeats CH92_07465 SM00421 helix_turn_helix, Lux Regulon CH92_07470 SM01266 CH92_07470 CH92_07480 SM00642 Alpha-amylase domain CH92_07485 SM00382 ATPases associated with a variety of cellular activities CH92_07535 SM00487 DEAD-like helicases superfamily CH92_07535 SM00490 helicase superfamily c-terminal domain CH92_07625 SM00731 SprT homologues. CH92_07640 SM00271 DnaJ molecular chaperone homology domain CH92_07745 SM00855 Phosphoglycerate mutase family CH92_07755 SM00382 ATPases associated with a variety of cellular activities CH92_07785 SM00450 Rhodanese Homology Domain CH92_07790 SM00341 Helicase and RNase D C-terminal CH92_07790 SM00474 3'-5' exonuclease CH92_07815 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH92_07850 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_07850 SM00924 MgtE intracellular N domain CH92_07905 SM00858 CH92_07905 CH92_07910 SM00260 Two component signalling adaptor domain CH92_07910 SM00448 cheY-homologous receiver domain CH92_07915 SM00138 Methyltransferase, chemotaxis proteins CH92_07960 SM00047 Lysozyme subfamily 2 CH92_07985 SM00530 Helix-turn-helix XRE-family like proteins CH92_07995 SM00671 Sel1-like repeats. CH92_08000 SM00052 Putative diguanylate phosphodiesterase CH92_08000 SM00267 diguanylate cyclase CH92_08005 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_08005 SM00245 tail specific protease CH92_08100 SM00387 Histidine kinase-like ATPases CH92_08100 SM00388 His Kinase A (phosphoacceptor) domain CH92_08100 SM00448 cheY-homologous receiver domain CH92_08160 SM00450 Rhodanese Homology Domain CH92_08170 SM00382 ATPases associated with a variety of cellular activities CH92_08175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_08175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_08175 SM01358 CH92_08175 CH92_08250 SM00382 ATPases associated with a variety of cellular activities CH92_08280 SM00331 Sigma factor PP2C-like phosphatases CH92_08280 SM00448 cheY-homologous receiver domain CH92_08335 SM00481 DNA polymerase alpha chain like domain CH92_08365 SM00434 DNA Topoisomerase IV CH92_08375 SM00830 Chorismate mutase type II CH92_08395 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_08400 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_08420 SM00463 Small MutS-related domain CH92_08460 SM01007 Class II Aldolase and Adducin N-terminal domain CH92_08490 SM00478 endonuclease III CH92_08490 SM01009 AlkA N-terminal domain CH92_08525 SM00382 ATPases associated with a variety of cellular activities CH92_08535 SM00493 CH92_08535 CH92_08540 SM00062 Bacterial periplasmic substrate-binding proteins CH92_08545 SM00382 ATPases associated with a variety of cellular activities CH92_08570 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_08570 SM00419 helix_turn_helix, cAMP Regulatory protein CH92_08575 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_08650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_08700 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_08705 SM00968 SMC proteins Flexible Hinge Domain CH92_08710 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH92_08715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH92_08715 SM00292 breast cancer carboxy-terminal domain CH92_08715 SM00532 Ligase N family CH92_08790 SM00861 Transketolase, pyrimidine binding domain CH92_08810 SM00881 CoA binding domain CH92_08840 SM00387 Histidine kinase-like ATPases CH92_08850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_08850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_08860 SM00825 Beta-ketoacyl synthase CH92_08880 SM00855 Phosphoglycerate mutase family CH92_08920 SM00450 Rhodanese Homology Domain CH92_08930 SM00903 Flavin reductase like domain CH92_08945 SM00460 Transglutaminase/protease-like homologues CH92_08955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_08955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_08995 SM00382 ATPases associated with a variety of cellular activities CH92_09070 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_09070 SM00895 CH92_09070 CH92_09155 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH92_09185 SM01329 CH92_09185 CH92_09190 SM00357 Cold shock protein domain CH92_09200 SM00382 ATPases associated with a variety of cellular activities CH92_09200 SM01086 C-terminal, D2-small domain, of ClpB protein CH92_09205 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_09225 SM00843 CH92_09225 CH92_09235 SM00382 ATPases associated with a variety of cellular activities CH92_09410 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_09410 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_09465 SM00346 helix_turn_helix isocitrate lyase regulation CH92_09530 SM00382 ATPases associated with a variety of cellular activities CH92_09545 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_09545 SM00895 CH92_09545 CH92_09630 SM00382 ATPases associated with a variety of cellular activities CH92_09640 SM00564 beta-propeller repeat CH92_09650 SM00342 helix_turn_helix, arabinose operon control protein CH92_09660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_09670 SM00972 Spore Coat Protein U domain CH92_09675 SM00972 Spore Coat Protein U domain CH92_09680 SM00972 Spore Coat Protein U domain CH92_09695 SM00972 Spore Coat Protein U domain CH92_09700 SM00448 cheY-homologous receiver domain CH92_09710 SM00073 Histidine Phosphotransfer domain CH92_09710 SM00260 Two component signalling adaptor domain CH92_09710 SM00387 Histidine kinase-like ATPases CH92_09710 SM01231 CH92_09710 CH92_09715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_09715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_09720 SM00260 Two component signalling adaptor domain CH92_09725 SM00138 Methyltransferase, chemotaxis proteins CH92_09730 SM00448 cheY-homologous receiver domain CH92_09735 SM00421 helix_turn_helix, Lux Regulon CH92_09735 SM00448 cheY-homologous receiver domain CH92_09740 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_09755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_09755 SM00387 Histidine kinase-like ATPases CH92_09755 SM00388 His Kinase A (phosphoacceptor) domain CH92_09755 SM00448 cheY-homologous receiver domain CH92_09765 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_09765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_09765 SM00091 PAS domain CH92_09765 SM00387 Histidine kinase-like ATPases CH92_09765 SM00388 His Kinase A (phosphoacceptor) domain CH92_09765 SM00448 cheY-homologous receiver domain CH92_09795 SM00260 Two component signalling adaptor domain CH92_09795 SM00448 cheY-homologous receiver domain CH92_09805 SM00486 DNA polymerase type-B family CH92_09825 SM00387 Histidine kinase-like ATPases CH92_09825 SM00388 His Kinase A (phosphoacceptor) domain CH92_09825 SM00448 cheY-homologous receiver domain CH92_09830 SM00387 Histidine kinase-like ATPases CH92_09830 SM00388 His Kinase A (phosphoacceptor) domain CH92_09835 SM00331 Sigma factor PP2C-like phosphatases CH92_09855 SM00052 Putative diguanylate phosphodiesterase CH92_09855 SM00267 diguanylate cyclase CH92_09860 SM00287 Bacterial SH3 domain homologues CH92_09875 SM00331 Sigma factor PP2C-like phosphatases CH92_09875 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CH92_09905 SM00829 Enoylreductase CH92_09920 SM00858 CH92_09920 CH92_09965 SM00342 helix_turn_helix, arabinose operon control protein CH92_10010 SM00342 helix_turn_helix, arabinose operon control protein CH92_10020 SM00342 helix_turn_helix, arabinose operon control protein CH92_10025 SM00822 CH92_10025 CH92_10045 SM00822 CH92_10045 CH92_10060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_10060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_10065 SM00849 Metallo-beta-lactamase superfamily CH92_10065 SM01027 Beta-Casp domain CH92_10075 SM00382 ATPases associated with a variety of cellular activities CH92_10085 SM00062 Bacterial periplasmic substrate-binding proteins CH92_10085 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH92_10115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_10175 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_10200 SM00342 helix_turn_helix, arabinose operon control protein CH92_10205 SM00342 helix_turn_helix, arabinose operon control protein CH92_10220 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_10250 SM00346 helix_turn_helix isocitrate lyase regulation CH92_10290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_10290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_10290 SM01049 CH92_10290 CH92_10305 SM00882 Coenzyme A transferase CH92_10310 SM00882 Coenzyme A transferase CH92_10325 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_10325 SM00091 PAS domain CH92_10325 SM00387 Histidine kinase-like ATPases CH92_10325 SM00388 His Kinase A (phosphoacceptor) domain CH92_10325 SM00448 cheY-homologous receiver domain CH92_10330 SM00346 helix_turn_helix isocitrate lyase regulation CH92_10335 SM00882 Coenzyme A transferase CH92_10340 SM00882 Coenzyme A transferase CH92_10395 SM00342 helix_turn_helix, arabinose operon control protein CH92_10415 SM00354 helix_turn _helix lactose operon repressor CH92_10480 SM00342 helix_turn_helix, arabinose operon control protein CH92_10485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_10485 SM00219 Tyrosine kinase, catalytic domain CH92_10485 SM00387 Histidine kinase-like ATPases CH92_10485 SM00388 His Kinase A (phosphoacceptor) domain CH92_10490 SM00448 cheY-homologous receiver domain CH92_10495 SM00421 helix_turn_helix, Lux Regulon CH92_10495 SM00448 cheY-homologous receiver domain CH92_10495 SM00862 Transcriptional regulatory protein, C terminal CH92_10520 SM00342 helix_turn_helix, arabinose operon control protein CH92_10525 SM00342 helix_turn_helix, arabinose operon control protein CH92_10600 SM00382 ATPases associated with a variety of cellular activities CH92_10625 SM00422 helix_turn_helix, mercury resistance CH92_10630 SM00882 Coenzyme A transferase CH92_10635 SM00882 Coenzyme A transferase CH92_10645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_10645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_10650 SM00878 Biotin carboxylase C-terminal domain CH92_10685 SM00382 ATPases associated with a variety of cellular activities CH92_10690 SM00382 ATPases associated with a variety of cellular activities CH92_10720 SM00342 helix_turn_helix, arabinose operon control protein CH92_10725 SM00822 CH92_10725 CH92_10780 SM00091 PAS domain CH92_10780 SM00911 HWE histidine kinase CH92_10785 SM00448 cheY-homologous receiver domain CH92_10795 SM00822 CH92_10795 CH92_10800 SM00411 bacterial (prokaryotic) histone like domain CH92_10870 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_10870 SM00895 CH92_10870 CH92_10875 SM00062 Bacterial periplasmic substrate-binding proteins CH92_10890 SM00382 ATPases associated with a variety of cellular activities CH92_10920 SM00052 Putative diguanylate phosphodiesterase CH92_10920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_10920 SM00091 PAS domain CH92_10920 SM00267 diguanylate cyclase CH92_10925 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_10930 SM00422 helix_turn_helix, mercury resistance CH92_10940 SM00267 diguanylate cyclase CH92_10965 SM00474 3'-5' exonuclease CH92_10990 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_11005 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_11020 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH92_11030 SM00421 helix_turn_helix, Lux Regulon CH92_11030 SM00448 cheY-homologous receiver domain CH92_11035 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH92_11035 SM00465 GIY-YIG type nucleases (URI domain) CH92_11080 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_11080 SM00895 CH92_11080 CH92_11115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH92_11125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH92_11145 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH92_11150 SM01130 CH92_11150 CH92_11160 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH92_11165 SM00858 CH92_11165 CH92_11195 SM00488 CH92_11195 CH92_11195 SM00491 CH92_11195 CH92_11200 SM00990 CH92_11200 CH92_11205 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_11210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_11210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_11260 SM00342 helix_turn_helix, arabinose operon control protein CH92_11330 SM00642 Alpha-amylase domain CH92_11340 SM00642 Alpha-amylase domain CH92_11350 SM00642 Alpha-amylase domain CH92_11375 SM00829 Enoylreductase CH92_11390 SM00155 Phospholipase D. Active site motifs. CH92_11400 SM00642 Alpha-amylase domain CH92_11405 SM00642 Alpha-amylase domain CH92_11410 SM00642 Alpha-amylase domain CH92_11440 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_11450 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CH92_11460 SM00829 Enoylreductase CH92_11525 SM00953 CH92_11525 CH92_11530 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_11535 SM01092 CO dehydrogenase flavoprotein C-terminal domain CH92_11580 SM00822 CH92_11580 CH92_11630 SM00342 helix_turn_helix, arabinose operon control protein CH92_11650 SM00267 diguanylate cyclase CH92_11655 SM00912 haemagglutination activity domain CH92_11670 SM00387 Histidine kinase-like ATPases CH92_11670 SM00388 His Kinase A (phosphoacceptor) domain CH92_11670 SM00448 cheY-homologous receiver domain CH92_11675 SM00342 helix_turn_helix, arabinose operon control protein CH92_11675 SM00448 cheY-homologous receiver domain CH92_11695 SM00822 CH92_11695 CH92_11700 SM00342 helix_turn_helix, arabinose operon control protein CH92_11710 SM00387 Histidine kinase-like ATPases CH92_11710 SM00388 His Kinase A (phosphoacceptor) domain CH92_11710 SM00448 cheY-homologous receiver domain CH92_11760 SM00382 ATPases associated with a variety of cellular activities CH92_11765 SM00382 ATPases associated with a variety of cellular activities CH92_11770 SM00382 ATPases associated with a variety of cellular activities CH92_11775 SM00840 CH92_11775 CH92_11820 SM00382 ATPases associated with a variety of cellular activities CH92_11835 SM00357 Cold shock protein domain CH92_11845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_11845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_11845 SM01049 CH92_11845 CH92_11880 SM00091 PAS domain CH92_11880 SM00267 diguanylate cyclase CH92_11885 SM00448 cheY-homologous receiver domain CH92_11895 SM01018 B12 binding domain CH92_11915 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_11935 SM00364 Leucine-rich repeats, bacterial type CH92_11935 SM00369 Leucine-rich repeats, typical (most populated) subfamily CH92_11965 SM00829 Enoylreductase CH92_11975 SM00855 Phosphoglycerate mutase family CH92_12035 SM00479 CH92_12035 CH92_12050 SM00849 Metallo-beta-lactamase superfamily CH92_12055 SM00257 Lysin motif CH92_12085 SM00382 ATPases associated with a variety of cellular activities CH92_12100 SM00411 bacterial (prokaryotic) histone like domain CH92_12105 SM00382 ATPases associated with a variety of cellular activities CH92_12105 SM00464 Found in ATP-dependent protease La (LON) CH92_12110 SM00382 ATPases associated with a variety of cellular activities CH92_12110 SM00994 ClpX C4-type zinc finger CH92_12110 SM01086 C-terminal, D2-small domain, of ClpB protein CH92_12195 SM00342 helix_turn_helix, arabinose operon control protein CH92_12215 SM00382 ATPases associated with a variety of cellular activities CH92_12240 SM00354 helix_turn _helix lactose operon repressor CH92_12345 SM00267 diguanylate cyclase CH92_12360 SM00363 S4 RNA-binding domain CH92_12395 SM00382 ATPases associated with a variety of cellular activities CH92_12420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_12420 SM00387 Histidine kinase-like ATPases CH92_12420 SM00388 His Kinase A (phosphoacceptor) domain CH92_12425 SM00448 cheY-homologous receiver domain CH92_12425 SM00862 Transcriptional regulatory protein, C terminal CH92_12440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_12445 SM00851 MGS-like domain CH92_12470 SM00481 DNA polymerase alpha chain like domain CH92_12490 SM00448 cheY-homologous receiver domain CH92_12490 SM00862 Transcriptional regulatory protein, C terminal CH92_12500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_12500 SM00387 Histidine kinase-like ATPases CH92_12500 SM00388 His Kinase A (phosphoacceptor) domain CH92_12530 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CH92_12535 SM00342 helix_turn_helix, arabinose operon control protein CH92_12590 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_12595 SM00341 Helicase and RNase D C-terminal CH92_12595 SM00487 DEAD-like helicases superfamily CH92_12595 SM00490 helicase superfamily c-terminal domain CH92_12595 SM00956 CH92_12595 CH92_12610 SM01144 CH92_12610 CH92_12645 SM00382 ATPases associated with a variety of cellular activities CH92_12685 SM00382 ATPases associated with a variety of cellular activities CH92_12700 SM00260 Two component signalling adaptor domain CH92_12700 SM00448 cheY-homologous receiver domain CH92_12705 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH92_12715 SM00226 Low molecular weight phosphatase family CH92_12790 SM00342 helix_turn_helix, arabinose operon control protein CH92_12845 SM00382 ATPases associated with a variety of cellular activities CH92_12860 SM00487 DEAD-like helicases superfamily CH92_12860 SM00490 helicase superfamily c-terminal domain CH92_12885 SM00220 Serine/Threonine protein kinases, catalytic domain CH92_12895 SM00422 helix_turn_helix, mercury resistance CH92_12900 SM00411 bacterial (prokaryotic) histone like domain CH92_12905 SM00873 B3/4 domain CH92_12905 SM00874 tRNA synthetase B5 domain CH92_12905 SM00896 Ferredoxin-fold anticodon binding domain CH92_12930 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH92_12965 SM00852 Probable molybdopterin binding domain CH92_12970 SM00852 Probable molybdopterin binding domain CH92_13015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_13035 SM00981 CH92_13035 CH92_13080 SM00327 von Willebrand factor (vWF) type A domain CH92_13085 SM00028 Tetratricopeptide repeats CH92_13100 SM00448 cheY-homologous receiver domain CH92_13100 SM01012 CH92_13100 CH92_13115 SM00382 ATPases associated with a variety of cellular activities CH92_13120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_13140 SM00220 Serine/Threonine protein kinases, catalytic domain CH92_13140 SM00331 Sigma factor PP2C-like phosphatases CH92_13140 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CH92_13160 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_13190 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH92_13195 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_13195 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_13285 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_13285 SM00450 Rhodanese Homology Domain CH92_13315 SM00342 helix_turn_helix, arabinose operon control protein CH92_13400 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH92_13405 SM01329 CH92_13405 CH92_13435 SM00052 Putative diguanylate phosphodiesterase CH92_13435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_13435 SM00091 PAS domain CH92_13435 SM00267 diguanylate cyclase CH92_13445 SM00822 CH92_13445 CH92_13505 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH92_13555 SM00448 cheY-homologous receiver domain CH92_13560 SM00382 ATPases associated with a variety of cellular activities CH92_13565 SM00267 diguanylate cyclase CH92_13570 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_13605 SM00382 ATPases associated with a variety of cellular activities CH92_13620 SM00822 CH92_13620 CH92_13630 SM00382 ATPases associated with a variety of cellular activities CH92_13705 SM00769 Water Stress and Hypersensitive response CH92_13755 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH92_13755 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH92_13755 SM00493 CH92_13755 CH92_13805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH92_13820 SM00450 Rhodanese Homology Domain CH92_13880 SM00822 CH92_13880 CH92_13925 SM00984 UDP binding domain CH92_13930 SM00984 UDP binding domain CH92_13940 SM00849 Metallo-beta-lactamase superfamily CH92_13940 SM01027 Beta-Casp domain CH92_13945 SM00411 bacterial (prokaryotic) histone like domain CH92_13950 SM00487 DEAD-like helicases superfamily CH92_13950 SM00490 helicase superfamily c-terminal domain CH92_13970 SM00841 Elongation factor P, C-terminal CH92_13970 SM01185 CH92_13970 CH92_14050 SM00382 ATPases associated with a variety of cellular activities CH92_14050 SM00448 cheY-homologous receiver domain CH92_14055 SM00091 PAS domain CH92_14055 SM00387 Histidine kinase-like ATPases CH92_14055 SM00388 His Kinase A (phosphoacceptor) domain CH92_14060 SM00382 ATPases associated with a variety of cellular activities CH92_14070 SM00028 Tetratricopeptide repeats CH92_14115 SM00382 ATPases associated with a variety of cellular activities CH92_14130 SM00450 Rhodanese Homology Domain CH92_14140 SM00260 Two component signalling adaptor domain CH92_14145 SM00260 Two component signalling adaptor domain CH92_14165 SM00448 cheY-homologous receiver domain CH92_14170 SM00073 Histidine Phosphotransfer domain CH92_14170 SM00260 Two component signalling adaptor domain CH92_14170 SM00387 Histidine kinase-like ATPases CH92_14170 SM01231 CH92_14170 CH92_14180 SM00448 cheY-homologous receiver domain CH92_14200 SM00382 ATPases associated with a variety of cellular activities CH92_14200 SM00962 SRP54-type protein, GTPase domain CH92_14260 SM00073 Histidine Phosphotransfer domain CH92_14265 SM00331 Sigma factor PP2C-like phosphatases CH92_14265 SM00448 cheY-homologous receiver domain CH92_14280 SM00382 ATPases associated with a variety of cellular activities CH92_14315 SM00829 Enoylreductase CH92_14320 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH92_14330 SM00052 Putative diguanylate phosphodiesterase CH92_14330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_14330 SM00091 PAS domain CH92_14330 SM00267 diguanylate cyclase CH92_14340 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_14360 SM00893 Electron transfer flavoprotein domain CH92_14365 SM00893 Electron transfer flavoprotein domain CH92_14375 SM00357 Cold shock protein domain CH92_14395 SM00563 Phosphate acyltransferases CH92_14430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_14430 SM00387 Histidine kinase-like ATPases CH92_14430 SM00388 His Kinase A (phosphoacceptor) domain CH92_14435 SM00448 cheY-homologous receiver domain CH92_14435 SM00862 Transcriptional regulatory protein, C terminal CH92_14480 SM01217 CH92_14480 CH92_14505 SM00487 DEAD-like helicases superfamily CH92_14505 SM00490 helicase superfamily c-terminal domain CH92_14545 SM00954 Region found in RelA / SpoT proteins CH92_14565 SM00073 Histidine Phosphotransfer domain CH92_14565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_14565 SM00387 Histidine kinase-like ATPases CH92_14565 SM00388 His Kinase A (phosphoacceptor) domain CH92_14565 SM00448 cheY-homologous receiver domain CH92_14585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_14585 SM00387 Histidine kinase-like ATPases CH92_14585 SM00388 His Kinase A (phosphoacceptor) domain CH92_14590 SM00448 cheY-homologous receiver domain CH92_14590 SM00862 Transcriptional regulatory protein, C terminal CH92_14730 SM00267 diguanylate cyclase CH92_14735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_14735 SM00866 CH92_14735 CH92_14750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_14750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_14750 SM01358 CH92_14750 CH92_14755 SM00822 CH92_14755 CH92_14765 SM00421 helix_turn_helix, Lux Regulon CH92_14815 SM00448 cheY-homologous receiver domain CH92_14815 SM00862 Transcriptional regulatory protein, C terminal CH92_14820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_14820 SM00387 Histidine kinase-like ATPases CH92_14820 SM00388 His Kinase A (phosphoacceptor) domain CH92_14845 SM01068 Putative carbohydrate binding domain CH92_14870 SM00248 ankyrin repeats CH92_14880 SM00062 Bacterial periplasmic substrate-binding proteins CH92_14895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_14895 SM00091 PAS domain CH92_14895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_14930 SM00347 helix_turn_helix multiple antibiotic resistance protein CH92_14950 SM00487 DEAD-like helicases superfamily CH92_14950 SM00490 helicase superfamily c-terminal domain CH92_14985 SM00420 helix_turn_helix, Deoxyribose operon repressor CH92_14985 SM01134 CH92_14985 CH92_15140 SM01007 Class II Aldolase and Adducin N-terminal domain CH92_15160 SM00822 CH92_15160 CH92_15190 SM01154 CH92_15190 CH92_15200 SM00937 CH92_15200 CH92_15215 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_15235 SM00796 Allophanate hydrolase subunit 1 CH92_15240 SM00797 Allophanate hydrolase subunit 2 CH92_15250 SM01322 CH92_15250 CH92_15275 SM00382 ATPases associated with a variety of cellular activities CH92_15300 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_15300 SM01240 CH92_15300 CH92_15330 SM00917 LeuA allosteric (dimerisation) domain CH92_15335 SM00829 Enoylreductase CH92_15375 SM00564 beta-propeller repeat CH92_15395 SM00530 Helix-turn-helix XRE-family like proteins CH92_15400 SM00028 Tetratricopeptide repeats CH92_15410 SM00562 CH92_15410 CH92_15430 SM00271 DnaJ molecular chaperone homology domain CH92_15485 SM01323 CH92_15485 CH92_15505 SM00357 Cold shock protein domain CH92_15605 SM00062 Bacterial periplasmic substrate-binding proteins CH92_15655 SM00248 ankyrin repeats CH92_15660 SM00062 Bacterial periplasmic substrate-binding proteins CH92_15685 SM00448 cheY-homologous receiver domain CH92_15690 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_15690 SM00091 PAS domain CH92_15775 SM00342 helix_turn_helix, arabinose operon control protein CH92_15835 SM00382 ATPases associated with a variety of cellular activities CH92_15835 SM00487 DEAD-like helicases superfamily CH92_15835 SM00490 helicase superfamily c-terminal domain CH92_15835 SM00847 Helicase associated domain (HA2) Add an annotation CH92_15840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_15840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_15860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_15860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_15885 SM00487 DEAD-like helicases superfamily CH92_15885 SM00490 helicase superfamily c-terminal domain CH92_15890 SM00487 DEAD-like helicases superfamily CH92_15890 SM00490 helicase superfamily c-terminal domain CH92_15935 SM00487 DEAD-like helicases superfamily CH92_15935 SM00490 helicase superfamily c-terminal domain CH92_15960 SM00880 CH92_15960 CH92_16005 SM00382 ATPases associated with a variety of cellular activities CH92_16040 SM00382 ATPases associated with a variety of cellular activities CH92_16045 SM00382 ATPases associated with a variety of cellular activities CH92_16055 SM01092 CO dehydrogenase flavoprotein C-terminal domain CH92_16060 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CH92_16090 SM00382 ATPases associated with a variety of cellular activities CH92_16095 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_16095 SM00895 CH92_16095 CH92_16160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_16160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_16165 SM00267 diguanylate cyclase CH92_16180 SM00052 Putative diguanylate phosphodiesterase CH92_16180 SM00267 diguanylate cyclase CH92_16225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_16225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_16250 SM00883 Chaperonin 10 Kd subunit CH92_16270 SM00822 CH92_16270 CH92_16300 SM00267 diguanylate cyclase CH92_16300 SM00448 cheY-homologous receiver domain CH92_16310 SM00091 PAS domain CH92_16310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_16310 SM00387 Histidine kinase-like ATPases CH92_16310 SM00388 His Kinase A (phosphoacceptor) domain CH92_16355 SM00957 SecA DEAD-like domain CH92_16355 SM00958 SecA preprotein cross-linking domain CH92_16380 SM00421 helix_turn_helix, Lux Regulon CH92_16435 SM00937 CH92_16435 CH92_16445 SM00028 Tetratricopeptide repeats CH92_16470 SM01400 CH92_16470 CH92_16535 SM00974 CH92_16535 CH92_16580 SM00947 Carbonic anhydrase CH92_16610 SM00917 LeuA allosteric (dimerisation) domain CH92_16725 SM00100 Cyclic nucleotide-monophosphate binding domain CH92_16770 SM00878 Biotin carboxylase C-terminal domain CH92_16795 SM00798 AICARFT/IMPCHase bienzyme CH92_16795 SM00851 MGS-like domain CH92_16800 SM01209 CH92_16800 CH92_16800 SM01210 CH92_16800 CH92_16805 SM00387 Histidine kinase-like ATPases CH92_16805 SM00388 His Kinase A (phosphoacceptor) domain CH92_16805 SM00448 cheY-homologous receiver domain CH92_16855 SM00864 Tubulin/FtsZ family, GTPase domain CH92_16855 SM00865 Tubulin/FtsZ family, C-terminal domain CH92_16860 SM00842 Cell division protein FtsA CH92_16950 SM00749 bacterial OsmY and nodulation domain CH92_17060 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_17115 SM00382 ATPases associated with a variety of cellular activities CH92_17120 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_17140 SM00382 ATPases associated with a variety of cellular activities CH92_17195 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_17230 SM00845 GatB domain CH92_17275 SM00448 cheY-homologous receiver domain CH92_17280 SM00387 Histidine kinase-like ATPases CH92_17280 SM00388 His Kinase A (phosphoacceptor) domain CH92_17315 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CH92_17320 SM00671 Sel1-like repeats. CH92_17370 SM00448 cheY-homologous receiver domain CH92_17370 SM00862 Transcriptional regulatory protein, C terminal CH92_17375 SM00387 Histidine kinase-like ATPases CH92_17425 SM01116 CH92_17425 CH92_17430 SM00248 ankyrin repeats CH92_17435 SM01060 CH92_17435 CH92_17460 SM00564 beta-propeller repeat CH92_17480 SM00354 helix_turn _helix lactose operon repressor CH92_17540 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_17540 SM00895 CH92_17540 CH92_17665 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH92_17695 SM00829 Enoylreductase CH92_17720 SM00422 helix_turn_helix, mercury resistance CH92_17750 SM00090 RIO-like kinase CH92_17755 SM00342 helix_turn_helix, arabinose operon control protein CH92_17780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_17780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_17790 SM00644 CH92_17790 CH92_17800 SM00342 helix_turn_helix, arabinose operon control protein CH92_17860 SM00382 ATPases associated with a variety of cellular activities CH92_17860 SM01086 C-terminal, D2-small domain, of ClpB protein CH92_17885 SM00387 Histidine kinase-like ATPases CH92_17885 SM00388 His Kinase A (phosphoacceptor) domain CH92_17890 SM00382 ATPases associated with a variety of cellular activities CH92_17890 SM00448 cheY-homologous receiver domain CH92_17900 SM00267 diguanylate cyclase CH92_17900 SM00448 cheY-homologous receiver domain CH92_17905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_17910 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_17925 SM00857 Resolvase, N terminal domain CH92_17940 SM01005 Alanine racemase, C-terminal domain CH92_17980 SM00091 PAS domain CH92_17980 SM00387 Histidine kinase-like ATPases CH92_17980 SM00448 cheY-homologous receiver domain CH92_17985 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH92_17990 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_17990 SM00357 Cold shock protein domain CH92_17990 SM00955 CH92_17990 CH92_18005 SM00788 Adenylosuccinate synthetase CH92_18015 SM00244 prohibitin homologues CH92_18020 SM00244 prohibitin homologues CH92_18040 SM00853 MutL C terminal dimerisation domain CH92_18040 SM01340 CH92_18040 CH92_18045 SM00257 Lysin motif CH92_18045 SM00646 CH92_18045 CH92_18135 SM00849 Metallo-beta-lactamase superfamily CH92_18185 SM00382 ATPases associated with a variety of cellular activities CH92_18210 SM00091 PAS domain CH92_18210 SM00387 Histidine kinase-like ATPases CH92_18210 SM00388 His Kinase A (phosphoacceptor) domain CH92_18210 SM00448 cheY-homologous receiver domain CH92_18245 SM00422 helix_turn_helix, mercury resistance CH92_18265 SM00861 Transketolase, pyrimidine binding domain CH92_18400 SM00487 DEAD-like helicases superfamily CH92_18400 SM00490 helicase superfamily c-terminal domain CH92_18425 SM00822 CH92_18425 CH92_18430 SM00062 Bacterial periplasmic substrate-binding proteins CH92_18435 SM00487 DEAD-like helicases superfamily CH92_18435 SM00490 helicase superfamily c-terminal domain CH92_18435 SM00847 Helicase associated domain (HA2) Add an annotation CH92_18455 SM00344 helix_turn_helix ASNC type CH92_18480 SM00567 E-Z type HEAT repeats CH92_18495 SM00382 ATPases associated with a variety of cellular activities CH92_18510 SM00382 ATPases associated with a variety of cellular activities CH92_18515 SM00382 ATPases associated with a variety of cellular activities CH92_18560 SM00387 Histidine kinase-like ATPases CH92_18560 SM00388 His Kinase A (phosphoacceptor) domain CH92_18600 SM00988 UreE urease accessory protein, N-terminal domain CH92_18640 SM00387 Histidine kinase-like ATPases CH92_18640 SM00388 His Kinase A (phosphoacceptor) domain CH92_18670 SM00671 Sel1-like repeats. CH92_18680 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_18695 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_18695 SM01091 Transporter associated domain CH92_18750 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_18765 SM00936 Penicillin-binding protein 5, C-terminal domain CH92_18810 SM00014 Acid phosphatase homologues CH92_18815 SM00464 Found in ATP-dependent protease La (LON) CH92_18835 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. CH92_18840 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH92_18845 SM00479 CH92_18845 CH92_18875 SM00450 Rhodanese Homology Domain CH92_18890 SM00052 Putative diguanylate phosphodiesterase CH92_18890 SM00091 PAS domain CH92_18890 SM00267 diguanylate cyclase CH92_18910 SM00434 DNA Topoisomerase IV CH92_18925 SM00387 Histidine kinase-like ATPases CH92_18925 SM00433 TopoisomeraseII CH92_19010 SM00382 ATPases associated with a variety of cellular activities CH92_19120 SM00052 Putative diguanylate phosphodiesterase CH92_19120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_19120 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_19120 SM00091 PAS domain CH92_19120 SM00267 diguanylate cyclase CH92_19140 SM00267 diguanylate cyclase CH92_19175 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_19175 SM00876 Biotin and Thiamin Synthesis associated domain CH92_19240 SM01091 Transporter associated domain CH92_19330 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_19330 SM00866 CH92_19330 CH92_19355 SM00382 ATPases associated with a variety of cellular activities CH92_19365 SM00387 Histidine kinase-like ATPases CH92_19365 SM00388 His Kinase A (phosphoacceptor) domain CH92_19365 SM00448 cheY-homologous receiver domain CH92_19375 SM00138 Methyltransferase, chemotaxis proteins CH92_19380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_19380 SM00387 Histidine kinase-like ATPases CH92_19380 SM00388 His Kinase A (phosphoacceptor) domain CH92_19380 SM00448 cheY-homologous receiver domain CH92_19395 SM00849 Metallo-beta-lactamase superfamily CH92_19405 SM00244 prohibitin homologues CH92_19410 SM00769 Water Stress and Hypersensitive response CH92_19420 SM00822 CH92_19420 CH92_19440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_19440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_19455 SM00116 Domain in cystathionine beta-synthase and other proteins. CH92_19460 SM00479 CH92_19460 CH92_19475 SM00965 Secretin and TonB N terminus short domain CH92_19510 SM00487 DEAD-like helicases superfamily CH92_19510 SM00490 helicase superfamily c-terminal domain CH92_19555 SM00448 cheY-homologous receiver domain CH92_19580 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH92_19585 SM00861 Transketolase, pyrimidine binding domain CH92_19605 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH92_19625 SM00382 ATPases associated with a variety of cellular activities CH92_19630 SM00532 Ligase N family CH92_19655 SM00996 S-adenosyl-L-homocysteine hydrolase CH92_19655 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CH92_19685 SM00867 YceI-like domain CH92_19705 SM00260 Two component signalling adaptor domain CH92_19715 SM00073 Histidine Phosphotransfer domain CH92_19715 SM00260 Two component signalling adaptor domain CH92_19715 SM00387 Histidine kinase-like ATPases CH92_19715 SM00448 cheY-homologous receiver domain CH92_19715 SM01231 CH92_19715 CH92_19720 SM00138 Methyltransferase, chemotaxis proteins CH92_19725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_19730 SM00260 Two component signalling adaptor domain CH92_19735 SM00448 cheY-homologous receiver domain CH92_19740 SM00448 cheY-homologous receiver domain CH92_19760 SM00732 Likely ribonuclease with RNase H fold. CH92_19790 SM00986 Uracil DNA glycosylase superfamily CH92_19790 SM00987 UreE urease accessory protein, C-terminal domain CH92_19795 SM00382 ATPases associated with a variety of cellular activities CH92_19800 SM00382 ATPases associated with a variety of cellular activities CH92_19845 SM00729 Elongator protein 3, MiaB family, Radical SAM CH92_19885 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_19885 SM00091 PAS domain CH92_19885 SM00387 Histidine kinase-like ATPases CH92_19885 SM00388 His Kinase A (phosphoacceptor) domain CH92_19885 SM00448 cheY-homologous receiver domain CH92_19885 SM01079 CH92_19885 CH92_19900 SM00382 ATPases associated with a variety of cellular activities CH92_19905 SM00382 ATPases associated with a variety of cellular activities CH92_19905 SM00962 SRP54-type protein, GTPase domain CH92_19905 SM00963 SRP54-type protein, helical bundle domain CH92_19945 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH92_19945 SM01232 CH92_19945 CH92_19970 SM00342 helix_turn_helix, arabinose operon control protein CH92_19970 SM00871 Bacterial transcription activator, effector binding domain CH92_19980 SM00912 haemagglutination activity domain CH92_20090 SM00382 ATPases associated with a variety of cellular activities CH92_20115 SM00267 diguanylate cyclase CH92_20165 SM00267 diguanylate cyclase CH92_20170 SM00387 Histidine kinase-like ATPases CH92_20170 SM00388 His Kinase A (phosphoacceptor) domain CH92_20175 SM00448 cheY-homologous receiver domain CH92_20175 SM00862 Transcriptional regulatory protein, C terminal CH92_20225 SM00382 ATPases associated with a variety of cellular activities CH92_20225 SM00448 cheY-homologous receiver domain CH92_20230 SM00091 PAS domain CH92_20230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_20230 SM00387 Histidine kinase-like ATPases CH92_20230 SM00388 His Kinase A (phosphoacceptor) domain CH92_20240 SM00644 CH92_20240 CH92_20245 SM00267 diguanylate cyclase CH92_20310 SM01011 Aminopeptidase P, N-terminal domain CH92_20350 SM00829 Enoylreductase CH92_20365 SM00450 Rhodanese Homology Domain CH92_20380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH92_20380 SM00245 tail specific protease CH92_20390 SM00062 Bacterial periplasmic substrate-binding proteins CH92_20395 SM00062 Bacterial periplasmic substrate-binding proteins CH92_20435 SM00478 endonuclease III CH92_20465 SM00487 DEAD-like helicases superfamily CH92_20470 SM00062 Bacterial periplasmic substrate-binding proteins CH92_20480 SM00382 ATPases associated with a variety of cellular activities CH92_20485 SM00062 Bacterial periplasmic substrate-binding proteins CH92_20510 SM00986 Uracil DNA glycosylase superfamily CH92_20510 SM00987 UreE urease accessory protein, C-terminal domain CH92_20530 SM01001 AIR carboxylase CH92_20550 SM00062 Bacterial periplasmic substrate-binding proteins CH92_20555 SM00530 Helix-turn-helix XRE-family like proteins CH92_20565 SM00870 CH92_20565 CH92_20570 SM00387 Histidine kinase-like ATPases CH92_20570 SM00388 His Kinase A (phosphoacceptor) domain CH92_20570 SM00448 cheY-homologous receiver domain CH92_20590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_20590 SM00091 PAS domain CH92_20590 SM00387 Histidine kinase-like ATPases CH92_20590 SM00388 His Kinase A (phosphoacceptor) domain CH92_20590 SM00448 cheY-homologous receiver domain CH92_20605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH92_20605 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH92_20610 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH92_20660 SM00357 Cold shock protein domain CH92_20665 SM00387 Histidine kinase-like ATPases CH92_20665 SM00388 His Kinase A (phosphoacceptor) domain CH92_20700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_20700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_20705 SM00487 DEAD-like helicases superfamily CH92_20705 SM00490 helicase superfamily c-terminal domain CH92_20740 SM00984 UDP binding domain CH92_20820 SM00363 S4 RNA-binding domain CH92_20835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_20835 SM00387 Histidine kinase-like ATPases CH92_20835 SM00388 His Kinase A (phosphoacceptor) domain CH92_20840 SM00448 cheY-homologous receiver domain CH92_20840 SM00862 Transcriptional regulatory protein, C terminal CH92_20845 SM00316 Ribosomal protein S1-like RNA-binding domain CH92_20845 SM00732 Likely ribonuclease with RNase H fold. CH92_20885 SM01118 CH92_20885 CH92_20890 SM00382 ATPases associated with a variety of cellular activities CH92_20905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_20905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_20905 SM00091 PAS domain CH92_20905 SM00387 Histidine kinase-like ATPases CH92_20905 SM00388 His Kinase A (phosphoacceptor) domain CH92_20905 SM00448 cheY-homologous receiver domain CH92_21020 SM00382 ATPases associated with a variety of cellular activities CH92_21060 SM00387 Histidine kinase-like ATPases CH92_21060 SM00388 His Kinase A (phosphoacceptor) domain CH92_21065 SM00382 ATPases associated with a variety of cellular activities CH92_21065 SM00448 cheY-homologous receiver domain CH92_21085 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CH92_21115 SM00382 ATPases associated with a variety of cellular activities CH92_21135 SM01230 CH92_21135 CH92_21145 SM01230 CH92_21145 CH92_21175 SM00267 diguanylate cyclase CH92_21185 SM00448 cheY-homologous receiver domain CH92_21190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_21190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_21190 SM00091 PAS domain CH92_21190 SM00387 Histidine kinase-like ATPases CH92_21190 SM00388 His Kinase A (phosphoacceptor) domain CH92_21195 SM00448 cheY-homologous receiver domain CH92_21200 SM00267 diguanylate cyclase CH92_21200 SM00448 cheY-homologous receiver domain CH92_21205 SM00387 Histidine kinase-like ATPases CH92_21205 SM00388 His Kinase A (phosphoacceptor) domain CH92_21205 SM00448 cheY-homologous receiver domain CH92_21210 SM00448 cheY-homologous receiver domain CH92_21215 SM00028 Tetratricopeptide repeats CH92_21250 SM00346 helix_turn_helix isocitrate lyase regulation CH92_21315 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH92_21315 SM00866 CH92_21315 CH92_21385 SM00382 ATPases associated with a variety of cellular activities CH92_21440 SM00903 Flavin reductase like domain CH92_21470 SM01130 CH92_21470 CH92_21490 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH92_21495 SM00354 helix_turn _helix lactose operon repressor CH92_21540 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH92_21610 SM00965 Secretin and TonB N terminus short domain CH92_21645 SM00860 SMI1 / KNR4 family CH92_21650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH92_21650 SM00387 Histidine kinase-like ATPases CH92_21650 SM00388 His Kinase A (phosphoacceptor) domain CH92_21655 SM00448 cheY-homologous receiver domain CH92_21660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH92_21660 SM00091 PAS domain CH92_21660 SM00387 Histidine kinase-like ATPases CH92_21660 SM00388 His Kinase A (phosphoacceptor) domain CH92_21660 SM00448 cheY-homologous receiver domain CH92_21700 SM00965 Secretin and TonB N terminus short domain CH92_21755 SM00220 Serine/Threonine protein kinases, catalytic domain CH92_21780 SM00487 DEAD-like helicases superfamily CH92_21780 SM00490 helicase superfamily c-terminal domain CH92_21825 SM00420 helix_turn_helix, Deoxyribose operon repressor CH92_21825 SM01134 CH92_21825 CH92_21830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH92_21830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH92_21845 SM00382 ATPases associated with a variety of cellular activities CH92_21885 SM00470 ParB-like nuclease domain CH92_21900 SM01228 CH92_21900 CH92_21915 SM01234 CH92_21915