locus-tag class description CFM90_00045 PF03143 Elongation factor Tu C-terminal domain CFM90_00045 PF03144 Elongation factor Tu domain 2 CFM90_00045 PF00009 Elongation factor Tu GTP binding domain CFM90_00060 PF00467 KOW motif CFM90_00060 PF02357 Transcription termination factor nusG CFM90_00065 PF03946 Ribosomal protein L11, N-terminal domain CFM90_00065 PF00298 Ribosomal protein L11, RNA binding domain CFM90_00070 PF00687 Ribosomal protein L1p/L10e family CFM90_00075 PF00466 Ribosomal protein L10 CFM90_00080 PF00542 Ribosomal protein L7/L12 C-terminal domain CFM90_00080 PF16320 Ribosomal protein L7/L12 dimerisation domain CFM90_00085 PF04563 RNA polymerase beta subunit CFM90_00085 PF04560 RNA polymerase Rpb2, domain 7 CFM90_00085 PF10385 RNA polymerase beta subunit external 1 domain CFM90_00085 PF00562 RNA polymerase Rpb2, domain 6 CFM90_00085 PF04561 RNA polymerase Rpb2, domain 2 CFM90_00085 PF04565 RNA polymerase Rpb2, domain 3 CFM90_00090 PF04998 RNA polymerase Rpb1, domain 5 CFM90_00090 PF04983 RNA polymerase Rpb1, domain 3 CFM90_00090 PF00623 RNA polymerase Rpb1, domain 2 CFM90_00090 PF04997 RNA polymerase Rpb1, domain 1 CFM90_00090 PF05000 RNA polymerase Rpb1, domain 4 CFM90_00095 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CFM90_00100 PF06672 Protein of unknown function (DUF1175) CFM90_00105 PF01835 MG2 domain CFM90_00105 PF07703 Alpha-2-macroglobulin bait region domain CFM90_00105 PF00207 Alpha-2-macroglobulin family CFM90_00110 PF08486 Stage II sporulation protein CFM90_00110 PF10062 Predicted secreted protein (DUF2300) CFM90_00115 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CFM90_00120 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CFM90_00130 PF00270 DEAD/DEAH box helicase CFM90_00130 PF09382 RQC domain CFM90_00130 PF16124 RecQ zinc-binding CFM90_00130 PF00570 HRDC domain CFM90_00130 PF00271 Helicase conserved C-terminal domain CFM90_00135 PF00164 Ribosomal protein S12/S23 CFM90_00140 PF00177 Ribosomal protein S7p/S5e CFM90_00145 PF00009 Elongation factor Tu GTP binding domain CFM90_00145 PF03144 Elongation factor Tu domain 2 CFM90_00145 PF00679 Elongation factor G C-terminus CFM90_00145 PF03764 Elongation factor G, domain IV CFM90_00145 PF14492 Elongation Factor G, domain II CFM90_00150 PF00009 Elongation factor Tu GTP binding domain CFM90_00150 PF03144 Elongation factor Tu domain 2 CFM90_00150 PF03143 Elongation factor Tu C-terminal domain CFM90_00155 PF00338 Ribosomal protein S10p/S20e CFM90_00160 PF00297 Ribosomal protein L3 CFM90_00165 PF00573 Ribosomal protein L4/L1 family CFM90_00170 PF00276 Ribosomal protein L23 CFM90_00175 PF03947 Ribosomal Proteins L2, C-terminal domain CFM90_00175 PF00181 Ribosomal Proteins L2, RNA binding domain CFM90_00180 PF00203 Ribosomal protein S19 CFM90_00185 PF00237 Ribosomal protein L22p/L17e CFM90_00190 PF00189 Ribosomal protein S3, C-terminal domain CFM90_00190 PF07650 KH domain CFM90_00195 PF00252 Ribosomal protein L16p/L10e CFM90_00200 PF00831 Ribosomal L29 protein CFM90_00205 PF00366 Ribosomal protein S17 CFM90_00210 PF00238 Ribosomal protein L14p/L23e CFM90_00215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CFM90_00220 PF00673 ribosomal L5P family C-terminus CFM90_00220 PF00281 Ribosomal protein L5 CFM90_00225 PF00253 Ribosomal protein S14p/S29e CFM90_00230 PF00410 Ribosomal protein S8 CFM90_00235 PF00347 Ribosomal protein L6 CFM90_00240 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CFM90_00245 PF00333 Ribosomal protein S5, N-terminal domain CFM90_00245 PF03719 Ribosomal protein S5, C-terminal domain CFM90_00250 PF00327 Ribosomal protein L30p/L7e CFM90_00255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CFM90_00260 PF00344 SecY translocase CFM90_00265 PF01176 Translation initiation factor 1A / IF-1 CFM90_00270 PF00444 Ribosomal protein L36 CFM90_00275 PF00416 Ribosomal protein S13/S18 CFM90_00280 PF00411 Ribosomal protein S11 CFM90_00285 PF01479 S4 domain CFM90_00285 PF00163 Ribosomal protein S4/S9 N-terminal domain CFM90_00290 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CFM90_00290 PF01000 RNA polymerase Rpb3/RpoA insert domain CFM90_00290 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CFM90_00295 PF01196 Ribosomal protein L17 CFM90_00305 PF11412 Disulphide bond corrector protein DsbC CFM90_00305 PF02683 Cytochrome C biogenesis protein transmembrane region CFM90_00310 PF00490 Delta-aminolevulinic acid dehydratase CFM90_00315 PF01926 50S ribosome-binding GTPase CFM90_00320 PF00034 Cytochrome c CFM90_00325 PF05140 ResB-like family CFM90_00330 PF01578 Cytochrome C assembly protein CFM90_00340 PF08281 Sigma-70, region 4 CFM90_00340 PF04542 Sigma-70 region 2 CFM90_00350 PF00174 Oxidoreductase molybdopterin binding domain CFM90_00355 PF01794 Ferric reductase like transmembrane component CFM90_00360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFM90_00360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFM90_00370 PF01491 Frataxin-like domain CFM90_00375 PF01609 Transposase DDE domain CFM90_00375 PF13006 Insertion element 4 transposase N-terminal CFM90_00380 PF00905 Penicillin binding protein transpeptidase domain CFM90_00380 PF00912 Transglycosylase CFM90_00380 PF17092 Penicillin-binding protein OB-like domain CFM90_00405 PF11741 AMIN domain CFM90_00405 PF07660 Secretin and TonB N terminus short domain CFM90_00405 PF00263 Bacterial type II and III secretion system protein CFM90_00405 PF03958 Bacterial type II/III secretion system short domain CFM90_00410 PF01202 Shikimate kinase CFM90_00415 PF01761 3-dehydroquinate synthase CFM90_00420 PF13286 Phosphohydrolase-associated domain CFM90_00420 PF01966 HD domain CFM90_00425 PF03922 OmpW family CFM90_00435 PF00310 Glutamine amidotransferases class-II CFM90_00435 PF04898 Glutamate synthase central domain CFM90_00435 PF01645 Conserved region in glutamate synthase CFM90_00435 PF01493 GXGXG motif CFM90_00440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_00440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFM90_00445 PF03401 Tripartite tricarboxylate transporter family receptor CFM90_00450 PF00005 ABC transporter CFM90_00455 PF02405 Permease MlaE CFM90_00460 PF02470 MlaD protein CFM90_00465 PF04333 MlaA lipoprotein CFM90_00480 PF00005 ABC transporter CFM90_00485 PF01061 ABC-2 type transporter CFM90_00495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFM90_00500 PF01634 ATP phosphoribosyltransferase CFM90_00505 PF00815 Histidinol dehydrogenase CFM90_00510 PF00155 Aminotransferase class I and II CFM90_00515 PF00475 Imidazoleglycerol-phosphate dehydratase CFM90_00520 PF01914 MarC family integral membrane protein CFM90_00525 PF00117 Glutamine amidotransferase class-I CFM90_00530 PF00977 Histidine biosynthesis protein CFM90_00535 PF00977 Histidine biosynthesis protein CFM90_00540 PF01502 Phosphoribosyl-AMP cyclohydrolase CFM90_00545 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CFM90_00555 PF02416 mttA/Hcf106 family CFM90_00560 PF02416 mttA/Hcf106 family CFM90_00565 PF00902 Sec-independent protein translocase protein (TatC) CFM90_00570 PF01609 Transposase DDE domain CFM90_00570 PF13006 Insertion element 4 transposase N-terminal CFM90_00575 PF17912 MalK OB fold domain CFM90_00575 PF03459 TOBE domain CFM90_00575 PF00005 ABC transporter CFM90_00580 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_00590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_00590 PF00512 His Kinase A (phospho-acceptor) domain CFM90_00595 PF00486 Transcriptional regulatory protein, C terminal CFM90_00595 PF00072 Response regulator receiver domain CFM90_00605 PF13609 Gram-negative porin CFM90_00610 PF13180 PDZ domain CFM90_00610 PF17820 PDZ domain CFM90_00615 PF01784 NIF3 (NGG1p interacting factor 3) CFM90_00620 PF01741 Large-conductance mechanosensitive channel, MscL CFM90_00625 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CFM90_00625 PF00355 Rieske [2Fe-2S] domain CFM90_00630 PF00032 Cytochrome b(C-terminal)/b6/petD CFM90_00630 PF00033 Cytochrome b/b6/petB CFM90_00635 PF02167 Cytochrome C1 family CFM90_00640 PF02798 Glutathione S-transferase, N-terminal domain CFM90_00640 PF00043 Glutathione S-transferase, C-terminal domain CFM90_00645 PF04386 Stringent starvation protein B CFM90_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_00660 PF00072 Response regulator receiver domain CFM90_00680 PF04773 FecR protein CFM90_00680 PF16220 Domain of unknown function (DUF4880) CFM90_00690 PF06481 COX Aromatic Rich Motif CFM90_00690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFM90_00695 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_00700 PF00510 Cytochrome c oxidase subunit III CFM90_00705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CFM90_00710 PF12848 ABC transporter CFM90_00710 PF00005 ABC transporter CFM90_00730 PF00535 Glycosyl transferase family 2 CFM90_00735 PF04349 Periplasmic glucan biosynthesis protein, MdoG CFM90_00745 PF02441 Flavoprotein CFM90_00750 PF00462 Glutaredoxin CFM90_00755 PF17827 PrmC N-terminal domain CFM90_00755 PF05175 Methyltransferase small domain CFM90_00765 PF03462 PCRF domain CFM90_00765 PF00472 RF-1 domain CFM90_00770 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CFM90_00770 PF01488 Shikimate / quinate 5-dehydrogenase CFM90_00770 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CFM90_00780 PF06071 Protein of unknown function (DUF933) CFM90_00780 PF01926 50S ribosome-binding GTPase CFM90_00790 PF01464 Transglycosylase SLT domain CFM90_00810 PF01494 FAD binding domain CFM90_00815 PF10411 Disulfide bond isomerase protein N-terminus CFM90_00815 PF13098 Thioredoxin-like domain CFM90_00820 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_00820 PF00107 Zinc-binding dehydrogenase CFM90_00830 PF12805 FUSC-like inner membrane protein yccS CFM90_00845 PF03167 Uracil DNA glycosylase superfamily CFM90_00855 PF00218 Indole-3-glycerol phosphate synthase CFM90_00860 PF00591 Glycosyl transferase family, a/b domain CFM90_00860 PF02885 Glycosyl transferase family, helical bundle domain CFM90_00870 PF00117 Glutamine amidotransferase class-I CFM90_00875 PF00425 chorismate binding enzyme CFM90_00875 PF04715 Anthranilate synthase component I, N terminal region CFM90_00880 PF13419 Haloacid dehalogenase-like hydrolase CFM90_00890 PF04379 ApaG domain CFM90_00910 PF03061 Thioesterase superfamily CFM90_00915 PF00378 Enoyl-CoA hydratase/isomerase CFM90_00920 PF00378 Enoyl-CoA hydratase/isomerase CFM90_00950 PF07687 Peptidase dimerisation domain CFM90_00950 PF01546 Peptidase family M20/M25/M40 CFM90_00955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_00960 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_00965 PF12911 N-terminal TM domain of oligopeptide transport permease C CFM90_00965 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_00970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_00970 PF00005 ABC transporter CFM90_00975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_00975 PF00005 ABC transporter CFM90_00985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CFM90_00990 PF00294 pfkB family carbohydrate kinase CFM90_00995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFM90_00995 PF00381 PTS HPr component phosphorylation site CFM90_00995 PF02896 PEP-utilising enzyme, TIM barrel domain CFM90_00995 PF00391 PEP-utilising enzyme, mobile domain CFM90_00995 PF05524 PEP-utilising enzyme, N-terminal CFM90_01000 PF00356 Bacterial regulatory proteins, lacI family CFM90_01005 PF00384 Molybdopterin oxidoreductase CFM90_01005 PF01568 Molydopterin dinucleotide binding domain CFM90_01005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFM90_01015 PF13193 AMP-binding enzyme C-terminal domain CFM90_01015 PF00501 AMP-binding enzyme CFM90_01020 PF00083 Sugar (and other) transporter CFM90_01020 PF07690 Major Facilitator Superfamily CFM90_01025 PF13609 Gram-negative porin CFM90_01030 PF03232 Ubiquinone biosynthesis protein COQ7 CFM90_01035 PF02381 MraZ protein, putative antitoxin-like CFM90_01040 PF01795 MraW methylase family CFM90_01050 PF03717 Penicillin-binding Protein dimerisation domain CFM90_01050 PF00905 Penicillin binding protein transpeptidase domain CFM90_01055 PF02875 Mur ligase family, glutamate ligase domain CFM90_01055 PF08245 Mur ligase middle domain CFM90_01060 PF08245 Mur ligase middle domain CFM90_01060 PF02875 Mur ligase family, glutamate ligase domain CFM90_01060 PF01225 Mur ligase family, catalytic domain CFM90_01065 PF00953 Glycosyl transferase family 4 CFM90_01065 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CFM90_01070 PF02875 Mur ligase family, glutamate ligase domain CFM90_01070 PF08245 Mur ligase middle domain CFM90_01075 PF01098 Cell cycle protein CFM90_01080 PF04101 Glycosyltransferase family 28 C-terminal domain CFM90_01080 PF03033 Glycosyltransferase family 28 N-terminal domain CFM90_01085 PF02875 Mur ligase family, glutamate ligase domain CFM90_01085 PF01225 Mur ligase family, catalytic domain CFM90_01085 PF08245 Mur ligase middle domain CFM90_01090 PF01820 D-ala D-ala ligase N-terminus CFM90_01090 PF07478 D-ala D-ala ligase C-terminus CFM90_01095 PF03799 Cell division protein FtsQ CFM90_01095 PF08478 POTRA domain, FtsQ-type CFM90_01100 PF02491 SHS2 domain inserted in FTSA CFM90_01105 PF00091 Tubulin/FtsZ family, GTPase domain CFM90_01105 PF12327 FtsZ family, C-terminal domain CFM90_01110 PF08534 Redoxin CFM90_01115 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CFM90_01125 PF01476 LysM domain CFM90_01125 PF01551 Peptidase family M23 CFM90_01125 PF08525 Opacity-associated protein A N-terminal motif CFM90_01130 PF02810 SEC-C motif CFM90_01130 PF07516 SecA Wing and Scaffold domain CFM90_01130 PF01043 SecA preprotein cross-linking domain CFM90_01130 PF07517 SecA DEAD-like domain CFM90_01135 PF01960 ArgJ family CFM90_01145 PF00293 NUDIX domain CFM90_01150 PF03884 DNA gyrase inhibitor YacG CFM90_01155 PF07072 Cell division protein CFM90_01160 PF01121 Dephospho-CoA kinase CFM90_01165 PF01478 Type IV leader peptidase family CFM90_01165 PF06750 Bacterial Peptidase A24 N-terminal domain CFM90_01170 PF00482 Type II secretion system (T2SS), protein F CFM90_01175 PF00437 Type II/IV secretion system protein CFM90_01175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CFM90_01180 PF00571 CBS domain CFM90_01180 PF03471 Transporter associated domain CFM90_01180 PF01595 Cyclin M transmembrane N-terminal domain CFM90_01190 PF00348 Polyprenyl synthetase CFM90_01195 PF00829 Ribosomal prokaryotic L21 protein CFM90_01200 PF01016 Ribosomal L27 protein CFM90_01205 PF01018 GTP1/OBG CFM90_01205 PF01926 50S ribosome-binding GTPase CFM90_01210 PF01472 PUA domain CFM90_01210 PF00696 Amino acid kinase family CFM90_01220 PF00293 NUDIX domain CFM90_01225 PF03129 Anticodon binding domain CFM90_01225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFM90_01225 PF04073 Aminoacyl-tRNA editing domain CFM90_01230 PF01464 Transglycosylase SLT domain CFM90_01240 PF01914 MarC family integral membrane protein CFM90_01250 PF00448 SRP54-type protein, GTPase domain CFM90_01250 PF02881 SRP54-type protein, helical bundle domain CFM90_01250 PF02978 Signal peptide binding domain CFM90_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_01265 PF00512 His Kinase A (phospho-acceptor) domain CFM90_01270 PF00072 Response regulator receiver domain CFM90_01270 PF02954 Bacterial regulatory protein, Fis family CFM90_01270 PF00158 Sigma-54 interaction domain CFM90_01275 PF01510 N-acetylmuramoyl-L-alanine amidase CFM90_01280 PF03477 ATP cone domain CFM90_01280 PF00317 Ribonucleotide reductase, all-alpha domain CFM90_01280 PF02867 Ribonucleotide reductase, barrel domain CFM90_01285 PF00268 Ribonucleotide reductase, small chain CFM90_01295 PF00892 EamA-like transporter family CFM90_01300 PF01037 Lrp/AsnC ligand binding domain CFM90_01310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_01310 PF02203 Tar ligand binding domain homologue CFM90_01310 PF00672 HAMP domain CFM90_01355 PF00294 pfkB family carbohydrate kinase CFM90_01360 PF08534 Redoxin CFM90_01375 PF02785 Biotin carboxylase C-terminal domain CFM90_01375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFM90_01375 PF00289 Biotin carboxylase, N-terminal domain CFM90_01380 PF00364 Biotin-requiring enzyme CFM90_01385 PF01220 Dehydroquinase class II CFM90_01390 PF00085 Thioredoxin CFM90_01400 PF01225 Mur ligase family, catalytic domain CFM90_01400 PF02875 Mur ligase family, glutamate ligase domain CFM90_01400 PF08245 Mur ligase middle domain CFM90_01405 PF05728 Uncharacterised protein family (UPF0227) CFM90_01410 PF04345 Chorismate lyase CFM90_01415 PF00773 RNB domain CFM90_01425 PF08501 Shikimate dehydrogenase substrate binding domain CFM90_01425 PF01488 Shikimate / quinate 5-dehydrogenase CFM90_01425 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CFM90_01430 PF00912 Transglycosylase CFM90_01440 PF01544 CorA-like Mg2+ transporter protein CFM90_01445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFM90_01455 PF00994 Probable molybdopterin binding domain CFM90_01455 PF18146 Damage-inducible protein CinA KH domain CFM90_01455 PF02464 Competence-damaged protein CFM90_01460 PF04608 Phosphatidylglycerophosphatase A CFM90_01465 PF00586 AIR synthase related protein, N-terminal domain CFM90_01465 PF02769 AIR synthase related protein, C-terminal domain CFM90_01470 PF03949 Malic enzyme, NAD binding domain CFM90_01470 PF01515 Phosphate acetyl/butaryl transferase CFM90_01470 PF00390 Malic enzyme, N-terminal domain CFM90_01490 PF04452 RNA methyltransferase CFM90_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_01500 PF03466 LysR substrate binding domain CFM90_01505 PF13609 Gram-negative porin CFM90_01515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CFM90_01520 PF00005 ABC transporter CFM90_01530 PF01609 Transposase DDE domain CFM90_01530 PF05598 Transposase domain (DUF772) CFM90_01540 PF08450 SMP-30/Gluconolactonase/LRE-like region CFM90_01555 PF01081 KDPG and KHG aldolase CFM90_01560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFM90_01560 PF13378 Enolase C-terminal domain-like CFM90_01565 PF02780 Transketolase, C-terminal domain CFM90_01565 PF02779 Transketolase, pyrimidine binding domain CFM90_01565 PF00456 Transketolase, thiamine diphosphate binding domain CFM90_01570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFM90_01570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFM90_01575 PF03466 LysR substrate binding domain CFM90_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_01580 PF01475 Ferric uptake regulator family CFM90_01585 PF04355 SmpA / OmlA family CFM90_01590 PF01113 Dihydrodipicolinate reductase, N-terminus CFM90_01590 PF05173 Dihydrodipicolinate reductase, C-terminus CFM90_01595 PF09334 tRNA synthetases class I (M) CFM90_01595 PF13603 Leucyl-tRNA synthetase, Domain 2 CFM90_01595 PF00133 tRNA synthetases class I (I, L, M and V) CFM90_01595 PF08264 Anticodon-binding domain of tRNA CFM90_01605 PF06144 DNA polymerase III, delta subunit CFM90_01605 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CFM90_01610 PF00171 Aldehyde dehydrogenase family CFM90_01620 PF01170 Putative RNA methylase family UPF0020 CFM90_01620 PF02926 THUMP domain CFM90_01625 PF00158 Sigma-54 interaction domain CFM90_01625 PF00072 Response regulator receiver domain CFM90_01625 PF02954 Bacterial regulatory protein, Fis family CFM90_01630 PF00512 His Kinase A (phospho-acceptor) domain CFM90_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_01630 PF00989 PAS fold CFM90_01635 PF00512 His Kinase A (phospho-acceptor) domain CFM90_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_01645 PF00072 Response regulator receiver domain CFM90_01650 PF02233 NAD(P) transhydrogenase beta subunit CFM90_01655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CFM90_01660 PF02261 Aspartate decarboxylase CFM90_01665 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CFM90_01665 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CFM90_01670 PF07715 TonB-dependent Receptor Plug Domain CFM90_01670 PF00593 TonB dependent receptor CFM90_01685 PF13533 Biotin-lipoyl like CFM90_01695 PF00293 NUDIX domain CFM90_01705 PF01645 Conserved region in glutamate synthase CFM90_01710 PF13417 Glutathione S-transferase, N-terminal domain CFM90_01710 PF00043 Glutathione S-transferase, C-terminal domain CFM90_01715 PF00206 Lyase CFM90_01715 PF08328 Adenylosuccinate lyase C-terminal CFM90_01720 PF01292 Prokaryotic cytochrome b561 CFM90_01725 PF04264 YceI-like domain CFM90_01730 PF04264 YceI-like domain CFM90_01735 PF07549 SecD/SecF GG Motif CFM90_01735 PF02355 Protein export membrane protein CFM90_01740 PF02355 Protein export membrane protein CFM90_01740 PF13721 SecD export protein N-terminal TM region CFM90_01740 PF07549 SecD/SecF GG Motif CFM90_01745 PF02699 Preprotein translocase subunit CFM90_01750 PF01702 Queuine tRNA-ribosyltransferase CFM90_01755 PF02547 Queuosine biosynthesis protein CFM90_01760 PF00271 Helicase conserved C-terminal domain CFM90_01760 PF00270 DEAD/DEAH box helicase CFM90_01760 PF17191 RecG wedge domain CFM90_01780 PF14031 Putative serine dehydratase domain CFM90_01780 PF01168 Alanine racemase, N-terminal domain CFM90_01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_01785 PF03466 LysR substrate binding domain CFM90_01790 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_01795 PF01546 Peptidase family M20/M25/M40 CFM90_01795 PF07687 Peptidase dimerisation domain CFM90_01800 PF01037 Lrp/AsnC ligand binding domain CFM90_01805 PF07687 Peptidase dimerisation domain CFM90_01805 PF01546 Peptidase family M20/M25/M40 CFM90_01810 PF04101 Glycosyltransferase family 28 C-terminal domain CFM90_01825 PF01609 Transposase DDE domain CFM90_01825 PF05598 Transposase domain (DUF772) CFM90_01860 PF00313 'Cold-shock' DNA-binding domain CFM90_01865 PF13006 Insertion element 4 transposase N-terminal CFM90_01865 PF01609 Transposase DDE domain CFM90_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_01940 PF03466 LysR substrate binding domain CFM90_01955 PF00210 Ferritin-like domain CFM90_01960 PF01040 UbiA prenyltransferase family CFM90_01970 PF14748 Pyrroline-5-carboxylate reductase dimerisation CFM90_01970 PF03807 NADP oxidoreductase coenzyme F420-dependent CFM90_01975 PF01168 Alanine racemase, N-terminal domain CFM90_01980 PF00437 Type II/IV secretion system protein CFM90_01985 PF00437 Type II/IV secretion system protein CFM90_02020 PF00255 Glutathione peroxidase CFM90_02030 PF07883 Cupin domain CFM90_02040 PF04172 LrgB-like family CFM90_02045 PF03788 LrgA family CFM90_02050 PF02754 Cysteine-rich domain CFM90_02050 PF13183 4Fe-4S dicluster domain CFM90_02055 PF01565 FAD binding domain CFM90_02060 PF02913 FAD linked oxidases, C-terminal domain CFM90_02060 PF01565 FAD binding domain CFM90_02065 PF03466 LysR substrate binding domain CFM90_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02070 PF01565 FAD binding domain CFM90_02070 PF02913 FAD linked oxidases, C-terminal domain CFM90_02075 PF01923 Cobalamin adenosyltransferase CFM90_02080 PF00924 Mechanosensitive ion channel CFM90_02080 PF05552 Conserved TM helix CFM90_02090 PF00793 DAHP synthetase I family CFM90_02095 PF01523 Putative modulator of DNA gyrase CFM90_02100 PF00795 Carbon-nitrogen hydrolase CFM90_02110 PF08335 GlnD PII-uridylyltransferase CFM90_02110 PF03710 Glutamate-ammonia ligase adenylyltransferase CFM90_02120 PF00082 Subtilase family CFM90_02120 PF01483 Proprotein convertase P-domain CFM90_02125 PF04151 Bacterial pre-peptidase C-terminal domain CFM90_02125 PF00082 Subtilase family CFM90_02135 PF02463 RecF/RecN/SMC N terminal domain CFM90_02140 PF01513 ATP-NAD kinase CFM90_02145 PF01628 HrcA protein C terminal domain CFM90_02150 PF07702 UTRA domain CFM90_02150 PF00392 Bacterial regulatory proteins, gntR family CFM90_02155 PF01175 Urocanase Rossmann-like domain CFM90_02155 PF17392 Urocanase C-terminal domain CFM90_02155 PF17391 Urocanase N-terminal domain CFM90_02160 PF00221 Aromatic amino acid lyase CFM90_02165 PF00491 Arginase family CFM90_02170 PF01979 Amidohydrolase family CFM90_02175 PF00762 Ferrochelatase CFM90_02180 PF01479 S4 domain CFM90_02195 PF01025 GrpE CFM90_02205 PF01272 Transcription elongation factor, GreA/GreB, C-term CFM90_02205 PF14760 Rnk N-terminus CFM90_02210 PF00012 Hsp70 protein CFM90_02215 PF00684 DnaJ central domain CFM90_02215 PF01556 DnaJ C terminal domain CFM90_02215 PF00226 DnaJ domain CFM90_02220 PF04715 Anthranilate synthase component I, N terminal region CFM90_02220 PF00117 Glutamine amidotransferase class-I CFM90_02220 PF00425 chorismate binding enzyme CFM90_02225 PF00005 ABC transporter CFM90_02230 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_02235 PF02548 Ketopantoate hydroxymethyltransferase CFM90_02245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CFM90_02250 PF01743 Poly A polymerase head domain CFM90_02250 PF12627 Probable RNA and SrmB- binding site of polymerase A CFM90_02250 PF12626 Polymerase A arginine-rich C-terminus CFM90_02260 PF00308 Bacterial dnaA protein CFM90_02265 PF01594 AI-2E family transporter CFM90_02270 PF00586 AIR synthase related protein, N-terminal domain CFM90_02270 PF02769 AIR synthase related protein, C-terminal domain CFM90_02285 PF02805 Metal binding domain of Ada CFM90_02285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFM90_02285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFM90_02285 PF12833 Helix-turn-helix domain CFM90_02295 PF13532 2OG-Fe(II) oxygenase superfamily CFM90_02300 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CFM90_02305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFM90_02305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFM90_02305 PF02805 Metal binding domain of Ada CFM90_02305 PF12833 Helix-turn-helix domain CFM90_02310 PF00583 Acetyltransferase (GNAT) family CFM90_02320 PF08676 MutL C terminal dimerisation domain CFM90_02320 PF01119 DNA mismatch repair protein, C-terminal domain CFM90_02325 PF02470 MlaD protein CFM90_02340 PF09335 SNARE associated Golgi protein CFM90_02345 PF13369 Transglutaminase-like superfamily CFM90_02350 PF03023 Lipid II flippase MurJ CFM90_02355 PF01649 Ribosomal protein S20 CFM90_02365 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFM90_02365 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFM90_02375 PF00764 Arginosuccinate synthase CFM90_02380 PF06865 Pyrimidine/purine nucleoside phosphorylase CFM90_02390 PF01565 FAD binding domain CFM90_02390 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CFM90_02395 PF04461 Protein of unknown function (DUF520) CFM90_02400 PF01156 Inosine-uridine preferring nucleoside hydrolase CFM90_02405 PF01804 Penicillin amidase CFM90_02410 PF02660 Glycerol-3-phosphate acyltransferase CFM90_02415 PF04073 Aminoacyl-tRNA editing domain CFM90_02420 PF00589 Phage integrase family CFM90_02420 PF02899 Phage integrase, N-terminal SAM-like domain CFM90_02425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFM90_02425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFM90_02435 PF08331 Domain of unknown function (DUF1730) CFM90_02440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CFM90_02445 PF01520 N-acetylmuramoyl-L-alanine amidase CFM90_02445 PF11741 AMIN domain CFM90_02450 PF13593 SBF-like CPA transporter family (DUF4137) CFM90_02455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02455 PF03466 LysR substrate binding domain CFM90_02460 PF00171 Aldehyde dehydrogenase family CFM90_02465 PF03466 LysR substrate binding domain CFM90_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02470 PF00106 short chain dehydrogenase CFM90_02475 PF05191 Adenylate kinase, active site lid CFM90_02480 PF02348 Cytidylyltransferase CFM90_02485 PF03966 Trm112p-like protein CFM90_02490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CFM90_02500 PF01618 MotA/TolQ/ExbB proton channel family CFM90_02505 PF13742 OB-fold nucleic acid binding domain CFM90_02505 PF02601 Exonuclease VII, large subunit CFM90_02510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CFM90_02510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CFM90_02520 PF02163 Peptidase family M50 CFM90_02520 PF00571 CBS domain CFM90_02530 PF05962 HutD CFM90_02535 PF00216 Bacterial DNA-binding protein CFM90_02560 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_02565 PF11871 Domain of unknown function (DUF3391) CFM90_02565 PF01966 HD domain CFM90_02580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_02585 PF07687 Peptidase dimerisation domain CFM90_02585 PF01546 Peptidase family M20/M25/M40 CFM90_02610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFM90_02610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFM90_02615 PF06029 AlkA N-terminal domain CFM90_02615 PF12833 Helix-turn-helix domain CFM90_02615 PF00730 HhH-GPD superfamily base excision DNA repair protein CFM90_02615 PF02805 Metal binding domain of Ada CFM90_02625 PF04228 Putative neutral zinc metallopeptidase CFM90_02640 PF07681 DoxX CFM90_02645 PF07690 Major Facilitator Superfamily CFM90_02650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02650 PF03466 LysR substrate binding domain CFM90_02655 PF03466 LysR substrate binding domain CFM90_02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02660 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CFM90_02665 PF12706 Beta-lactamase superfamily domain CFM90_02675 PF03150 Di-haem cytochrome c peroxidase CFM90_02690 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_02710 PF00313 'Cold-shock' DNA-binding domain CFM90_02715 PF02617 ATP-dependent Clp protease adaptor protein ClpS CFM90_02720 PF17871 AAA lid domain CFM90_02720 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_02720 PF10431 C-terminal, D2-small domain, of ClpB protein CFM90_02720 PF02861 Clp amino terminal domain, pathogenicity island component CFM90_02720 PF07724 AAA domain (Cdc48 subfamily) CFM90_02725 PF00692 dUTPase CFM90_02730 PF00296 Luciferase-like monooxygenase CFM90_02735 PF04127 DNA / pantothenate metabolism flavoprotein CFM90_02735 PF02441 Flavoprotein CFM90_02745 PF01252 Signal peptidase (SPase) II CFM90_02750 PF08264 Anticodon-binding domain of tRNA CFM90_02750 PF06827 Zinc finger found in FPG and IleRS CFM90_02750 PF00133 tRNA synthetases class I (I, L, M and V) CFM90_02755 PF01687 Riboflavin kinase CFM90_02755 PF06574 FAD synthetase CFM90_02760 PF00512 His Kinase A (phospho-acceptor) domain CFM90_02760 PF09308 LuxQ, periplasmic CFM90_02760 PF00072 Response regulator receiver domain CFM90_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_02765 PF00072 Response regulator receiver domain CFM90_02765 PF00196 Bacterial regulatory proteins, luxR family CFM90_02770 PF00551 Formyl transferase CFM90_02775 PF01029 NusB family CFM90_02775 PF01189 16S rRNA methyltransferase RsmB/F CFM90_02780 PF13091 PLD-like domain CFM90_02785 PF12794 Mechanosensitive ion channel inner membrane domain 1 CFM90_02785 PF12795 Mechanosensitive ion channel porin domain CFM90_02785 PF00924 Mechanosensitive ion channel CFM90_02795 PF02445 Quinolinate synthetase A protein CFM90_02800 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CFM90_02800 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CFM90_02805 PF00890 FAD binding domain CFM90_02805 PF02910 Fumarate reductase flavoprotein C-term CFM90_02810 PF00471 Ribosomal protein L33 CFM90_02815 PF00830 Ribosomal L28 family CFM90_02820 PF04002 RadC-like JAB domain CFM90_02825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFM90_02830 PF02401 LytB protein CFM90_02835 PF13458 Periplasmic binding protein CFM90_02840 PF02653 Branched-chain amino acid transport system / permease component CFM90_02845 PF11862 Domain of unknown function (DUF3382) CFM90_02845 PF02653 Branched-chain amino acid transport system / permease component CFM90_02850 PF00005 ABC transporter CFM90_02850 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_02855 PF00005 ABC transporter CFM90_02865 PF00202 Aminotransferase class-III CFM90_02870 PF00970 Oxidoreductase FAD-binding domain CFM90_02870 PF00175 Oxidoreductase NAD-binding domain CFM90_02870 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_02880 PF07694 5TMR of 5TMR-LYT CFM90_02880 PF00990 Diguanylate cyclase, GGDEF domain CFM90_02900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFM90_02900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFM90_02910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02910 PF03466 LysR substrate binding domain CFM90_02920 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFM90_02920 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFM90_02930 PF01507 Phosphoadenosine phosphosulfate reductase family CFM90_02935 PF01507 Phosphoadenosine phosphosulfate reductase family CFM90_02940 PF00009 Elongation factor Tu GTP binding domain CFM90_02945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_02970 PF02789 Cytosol aminopeptidase family, N-terminal domain CFM90_02970 PF00883 Cytosol aminopeptidase family, catalytic domain CFM90_02975 PF04364 DNA polymerase III chi subunit, HolC CFM90_02985 PF00920 Dehydratase family CFM90_02990 PF03466 LysR substrate binding domain CFM90_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_02995 PF01790 Prolipoprotein diacylglyceryl transferase CFM90_03030 PF00593 TonB dependent receptor CFM90_03030 PF07715 TonB-dependent Receptor Plug Domain CFM90_03035 PF01032 FecCD transport family CFM90_03040 PF00005 ABC transporter CFM90_03045 PF02277 Phosphoribosyltransferase CFM90_03050 PF02654 Cobalamin-5-phosphate synthase CFM90_03060 PF01497 Periplasmic binding protein CFM90_03065 PF00155 Aminotransferase class I and II CFM90_03070 PF03186 CobD/Cbib protein CFM90_03070 PF17113 Regulatory signalling modulator protein AmpE CFM90_03075 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CFM90_03080 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CFM90_03080 PF07685 CobB/CobQ-like glutamine amidotransferase domain CFM90_03095 PF02569 Pantoate-beta-alanine ligase CFM90_03100 PF02616 Segregation and condensation protein ScpA CFM90_03115 PF04357 TamB, inner membrane protein subunit of TAM complex CFM90_03125 PF09334 tRNA synthetases class I (M) CFM90_03125 PF01588 Putative tRNA binding domain CFM90_03130 PF00691 OmpA family CFM90_03130 PF05736 OprF membrane domain CFM90_03135 PF10609 NUBPL iron-transfer P-loop NTPase CFM90_03165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFM90_03165 PF00384 Molybdopterin oxidoreductase CFM90_03165 PF01568 Molydopterin dinucleotide binding domain CFM90_03170 PF13247 4Fe-4S dicluster domain CFM90_03190 PF00080 Copper/zinc superoxide dismutase (SODC) CFM90_03195 PF02634 FdhD/NarQ family CFM90_03200 PF00692 dUTPase CFM90_03205 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CFM90_03205 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CFM90_03205 PF01276 Orn/Lys/Arg decarboxylase, major domain CFM90_03215 PF14698 Argininosuccinate lyase C-terminal CFM90_03215 PF00206 Lyase CFM90_03240 PF00311 Phosphoenolpyruvate carboxylase CFM90_03245 PF03900 Porphobilinogen deaminase, C-terminal domain CFM90_03245 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CFM90_03250 PF02602 Uroporphyrinogen-III synthase HemD CFM90_03270 PF07690 Major Facilitator Superfamily CFM90_03280 PF00171 Aldehyde dehydrogenase family CFM90_03285 PF00719 Inorganic pyrophosphatase CFM90_03300 PF02540 NAD synthase CFM90_03300 PF00795 Carbon-nitrogen hydrolase CFM90_03305 PF13847 Methyltransferase domain CFM90_03310 PF00543 Nitrogen regulatory protein P-II CFM90_03315 PF03458 UPF0126 domain CFM90_03325 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_03330 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CFM90_03330 PF17854 FtsK alpha domain CFM90_03330 PF09397 Ftsk gamma domain CFM90_03330 PF01580 FtsK/SpoIIIE family CFM90_03335 PF03548 Outer membrane lipoprotein carrier protein LolA CFM90_03345 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_03345 PF12002 MgsA AAA+ ATPase C terminal CFM90_03345 PF16193 AAA C-terminal domain CFM90_03350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFM90_03350 PF02403 Seryl-tRNA synthetase N-terminal domain CFM90_03360 PF02796 Helix-turn-helix domain of resolvase CFM90_03360 PF00239 Resolvase, N terminal domain CFM90_03385 PF00665 Integrase core domain CFM90_03390 PF01695 IstB-like ATP binding protein CFM90_03420 PF17200 Single Cache domain 2 CFM90_03420 PF07730 Histidine kinase CFM90_03425 PF07963 Prokaryotic N-terminal methylation motif CFM90_03425 PF08334 Type II secretion system (T2SS), protein G CFM90_03430 PF00482 Type II secretion system (T2SS), protein F CFM90_03435 PF00437 Type II/IV secretion system protein CFM90_03460 PF00263 Bacterial type II and III secretion system protein CFM90_03460 PF03958 Bacterial type II/III secretion system short domain CFM90_03470 PF07963 Prokaryotic N-terminal methylation motif CFM90_03470 PF08334 Type II secretion system (T2SS), protein G CFM90_03485 PF07732 Multicopper oxidase CFM90_03485 PF00394 Multicopper oxidase CFM90_03520 PF01464 Transglycosylase SLT domain CFM90_03540 PF00578 AhpC/TSA family CFM90_03550 PF06903 VirK protein CFM90_03590 PF00571 CBS domain CFM90_03590 PF03471 Transporter associated domain CFM90_03590 PF01595 Cyclin M transmembrane N-terminal domain CFM90_03645 PF01266 FAD dependent oxidoreductase CFM90_03650 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_03655 PF00005 ABC transporter CFM90_03660 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_03665 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_03670 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_03680 PF09339 IclR helix-turn-helix domain CFM90_03680 PF01614 Bacterial transcriptional regulator CFM90_03685 PF01144 Coenzyme A transferase CFM90_03690 PF01144 Coenzyme A transferase CFM90_03695 PF00108 Thiolase, N-terminal domain CFM90_03695 PF02803 Thiolase, C-terminal domain CFM90_03700 PF00206 Lyase CFM90_03700 PF10397 Adenylosuccinate lyase C-terminus CFM90_03705 PF12146 Serine aminopeptidase, S33 CFM90_03710 PF02627 Carboxymuconolactone decarboxylase family CFM90_03725 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_03725 PF00005 ABC transporter CFM90_03730 PF00005 ABC transporter CFM90_03735 PF13458 Periplasmic binding protein CFM90_03740 PF03466 LysR substrate binding domain CFM90_03740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_03745 PF01494 FAD binding domain CFM90_03750 PF03537 Glycoside-hydrolase family GH114 CFM90_03760 PF01176 Translation initiation factor 1A / IF-1 CFM90_03770 PF00483 Nucleotidyl transferase CFM90_03775 PF10458 Valyl tRNA synthetase tRNA binding arm CFM90_03775 PF00133 tRNA synthetases class I (I, L, M and V) CFM90_03775 PF08264 Anticodon-binding domain of tRNA CFM90_03780 PF00580 UvrD/REP helicase N-terminal domain CFM90_03780 PF13361 UvrD-like helicase C-terminal domain CFM90_03790 PF01636 Phosphotransferase enzyme family CFM90_03800 PF03641 Possible lysine decarboxylase CFM90_03805 PF01367 5'-3' exonuclease, C-terminal SAM fold CFM90_03805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFM90_03805 PF01612 3'-5' exonuclease CFM90_03805 PF00476 DNA polymerase family A CFM90_03810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_03815 PF01738 Dienelactone hydrolase family CFM90_03830 PF00581 Rhodanese-like domain CFM90_03845 PF02609 Exonuclease VII small subunit CFM90_03850 PF00348 Polyprenyl synthetase CFM90_03855 PF02779 Transketolase, pyrimidine binding domain CFM90_03855 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CFM90_03855 PF02780 Transketolase, C-terminal domain CFM90_03860 PF02649 Type I GTP cyclohydrolase folE2 CFM90_03865 PF00814 Glycoprotease family CFM90_03875 PF09424 Yqey-like protein CFM90_03880 PF10410 DnaB-helicase binding domain of primase CFM90_03880 PF08278 DNA primase DnaG DnaB-binding CFM90_03880 PF08275 DNA primase catalytic core, N-terminal domain CFM90_03880 PF01807 CHC2 zinc finger CFM90_03885 PF00140 Sigma-70 factor, region 1.2 CFM90_03885 PF04545 Sigma-70, region 4 CFM90_03885 PF04539 Sigma-70 region 3 CFM90_03885 PF04546 Sigma-70, non-essential region CFM90_03885 PF03979 Sigma-70 factor, region 1.1 CFM90_03885 PF04542 Sigma-70 region 2 CFM90_03895 PF00753 Metallo-beta-lactamase superfamily CFM90_03905 PF01613 Flavin reductase like domain CFM90_03905 PF00258 Flavodoxin CFM90_03910 PF00270 DEAD/DEAH box helicase CFM90_03910 PF00271 Helicase conserved C-terminal domain CFM90_03915 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFM90_03920 PF03466 LysR substrate binding domain CFM90_03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_03925 PF17954 Quercetinase C-terminal cupin domain CFM90_03925 PF02678 Pirin CFM90_03930 PF03358 NADPH-dependent FMN reductase CFM90_03940 PF01336 OB-fold nucleic acid binding domain CFM90_03940 PF02811 PHP domain CFM90_03940 PF14579 Helix-hairpin-helix motif CFM90_03940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFM90_03940 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFM90_03955 PF00535 Glycosyl transferase family 2 CFM90_03965 PF00005 ABC transporter CFM90_03965 PF00664 ABC transporter transmembrane region CFM90_03980 PF00575 S1 RNA binding domain CFM90_03980 PF10150 Ribonuclease E/G family CFM90_03985 PF02545 Maf-like protein CFM90_04000 PF01467 Cytidylyltransferase-like CFM90_04005 PF01218 Coproporphyrinogen III oxidase CFM90_04010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFM90_04010 PF02844 Phosphoribosylglycinamide synthetase, N domain CFM90_04010 PF02843 Phosphoribosylglycinamide synthetase, C domain CFM90_04015 PF01709 Transcriptional regulator CFM90_04020 PF05872 Bacterial protein of unknown function (DUF853) CFM90_04030 PF00892 EamA-like transporter family CFM90_04040 PF02142 MGS-like domain CFM90_04045 PF00107 Zinc-binding dehydrogenase CFM90_04045 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_04080 PF02608 ABC transporter substrate-binding protein PnrA-like CFM90_04095 PF00005 ABC transporter CFM90_04100 PF07690 Major Facilitator Superfamily CFM90_04105 PF02682 Carboxyltransferase domain, subdomain C and D CFM90_04110 PF02626 Carboxyltransferase domain, subdomain A and B CFM90_04115 PF03746 LamB/YcsF family CFM90_04130 PF03480 Bacterial extracellular solute-binding protein, family 7 CFM90_04135 PF01470 Pyroglutamyl peptidase CFM90_04150 PF12706 Beta-lactamase superfamily domain CFM90_04160 PF06463 Molybdenum Cofactor Synthesis C CFM90_04160 PF04055 Radical SAM superfamily CFM90_04165 PF00037 4Fe-4S binding domain CFM90_04165 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_04170 PF11953 Domain of unknown function (DUF3470) CFM90_04170 PF00037 4Fe-4S binding domain CFM90_04175 PF00384 Molybdopterin oxidoreductase CFM90_04175 PF01568 Molydopterin dinucleotide binding domain CFM90_04175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFM90_04195 PF06969 HemN C-terminal domain CFM90_04195 PF04055 Radical SAM superfamily CFM90_04200 PF01725 Ham1 family CFM90_04205 PF03725 3' exoribonuclease family, domain 2 CFM90_04205 PF01138 3' exoribonuclease family, domain 1 CFM90_04215 PF00069 Protein kinase domain CFM90_04215 PF08239 Bacterial SH3 domain CFM90_04220 PF08340 Domain of unknown function (DUF1732) CFM90_04220 PF03755 YicC-like family, N-terminal region CFM90_04225 PF00625 Guanylate kinase CFM90_04230 PF01192 RNA polymerase Rpb6 CFM90_04235 PF13291 ACT domain CFM90_04235 PF02824 TGS domain CFM90_04235 PF04607 Region found in RelA / SpoT proteins CFM90_04245 PF01272 Transcription elongation factor, GreA/GreB, C-term CFM90_04245 PF03449 Transcription elongation factor, N-terminal CFM90_04265 PF04972 BON domain CFM90_04265 PF01476 LysM domain CFM90_04275 PF00294 pfkB family carbohydrate kinase CFM90_04280 PF08013 Tagatose 6 phosphate kinase CFM90_04290 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_04295 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_04300 PF13419 Haloacid dehalogenase-like hydrolase CFM90_04305 PF17912 MalK OB fold domain CFM90_04305 PF00005 ABC transporter CFM90_04320 PF01638 HxlR-like helix-turn-helix CFM90_04325 PF00342 Phosphoglucose isomerase CFM90_04325 PF00342 Phosphoglucose isomerase CFM90_04330 PF13609 Gram-negative porin CFM90_04355 PF08125 Mannitol dehydrogenase C-terminal domain CFM90_04355 PF01232 Mannitol dehydrogenase Rossmann domain CFM90_04360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFM90_04360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFM90_04365 PF00325 Bacterial regulatory proteins, crp family CFM90_04365 PF04198 Putative sugar-binding domain CFM90_04375 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CFM90_04380 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CFM90_04380 PF11940 Domain of unknown function (DUF3458) Ig-like fold CFM90_04380 PF01433 Peptidase family M1 domain CFM90_04390 PF01515 Phosphate acetyl/butaryl transferase CFM90_04390 PF03949 Malic enzyme, NAD binding domain CFM90_04390 PF00390 Malic enzyme, N-terminal domain CFM90_04400 PF01014 Uricase CFM90_04400 PF09349 OHCU decarboxylase CFM90_04410 PF01979 Amidohydrolase family CFM90_04415 PF00860 Permease family CFM90_04425 PF00576 HIUase/Transthyretin family CFM90_04440 PF01266 FAD dependent oxidoreductase CFM90_04445 PF00083 Sugar (and other) transporter CFM90_04450 PF00701 Dihydrodipicolinate synthetase family CFM90_04455 PF00171 Aldehyde dehydrogenase family CFM90_04460 PF00892 EamA-like transporter family CFM90_04465 PF13609 Gram-negative porin CFM90_04475 PF00005 ABC transporter CFM90_04480 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_04485 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_04495 PF00392 Bacterial regulatory proteins, gntR family CFM90_04495 PF07729 FCD domain CFM90_04510 PF01169 Uncharacterized protein family UPF0016 CFM90_04515 PF01979 Amidohydrolase family CFM90_04520 PF00962 Adenosine/AMP deaminase CFM90_04530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFM90_04530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFM90_04535 PF01799 [2Fe-2S] binding domain CFM90_04535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFM90_04535 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_04535 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFM90_04540 PF03466 LysR substrate binding domain CFM90_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_04545 PF12849 PBP superfamily domain CFM90_04575 PF03641 Possible lysine decarboxylase CFM90_04580 PF00440 Bacterial regulatory proteins, tetR family CFM90_04580 PF08359 YsiA-like protein, C-terminal region CFM90_04585 PF01219 Prokaryotic diacylglycerol kinase CFM90_04590 PF13439 Glycosyltransferase Family 4 CFM90_04590 PF00534 Glycosyl transferases group 1 CFM90_04625 PF00205 Thiamine pyrophosphate enzyme, central domain CFM90_04625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFM90_04625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFM90_04630 PF10369 Small subunit of acetolactate synthase CFM90_04635 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CFM90_04635 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CFM90_04640 PF02666 Phosphatidylserine decarboxylase CFM90_04645 PF01066 CDP-alcohol phosphatidyltransferase CFM90_04650 PF00682 HMGL-like CFM90_04650 PF08502 LeuA allosteric (dimerisation) domain CFM90_04660 PF13458 Periplasmic binding protein CFM90_04665 PF00312 Ribosomal protein S15 CFM90_04670 PF03725 3' exoribonuclease family, domain 2 CFM90_04670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CFM90_04670 PF01138 3' exoribonuclease family, domain 1 CFM90_04670 PF00575 S1 RNA binding domain CFM90_04670 PF00013 KH domain CFM90_04685 PF00121 Triosephosphate isomerase CFM90_04690 PF03840 Preprotein translocase SecG subunit CFM90_04700 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CFM90_04705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CFM90_04710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CFM90_04715 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CFM90_04725 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFM90_04725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFM90_04725 PF10531 SLBB domain CFM90_04730 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CFM90_04730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFM90_04730 PF00384 Molybdopterin oxidoreductase CFM90_04735 PF00146 NADH dehydrogenase CFM90_04740 PF12838 4Fe-4S dicluster domain CFM90_04745 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CFM90_04750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFM90_04755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFM90_04755 PF00361 Proton-conducting membrane transporter CFM90_04760 PF00361 Proton-conducting membrane transporter CFM90_04760 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CFM90_04765 PF00361 Proton-conducting membrane transporter CFM90_04785 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_04785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_04785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_04790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_04790 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_04790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_04795 PF00171 Aldehyde dehydrogenase family CFM90_04795 PF01575 MaoC like domain CFM90_04810 PF02653 Branched-chain amino acid transport system / permease component CFM90_04815 PF02653 Branched-chain amino acid transport system / permease component CFM90_04820 PF00005 ABC transporter CFM90_04820 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_04825 PF00005 ABC transporter CFM90_04830 PF01774 UreD urease accessory protein CFM90_04835 PF00547 Urease, gamma subunit CFM90_04840 PF04955 HupE / UreJ protein CFM90_04845 PF00699 Urease beta subunit CFM90_04850 PF00449 Urease alpha-subunit, N-terminal domain CFM90_04850 PF01979 Amidohydrolase family CFM90_04855 PF05194 UreE urease accessory protein, C-terminal domain CFM90_04855 PF02814 UreE urease accessory protein, N-terminal domain CFM90_04860 PF01730 UreF CFM90_04865 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFM90_04890 PF00043 Glutathione S-transferase, C-terminal domain CFM90_04890 PF02798 Glutathione S-transferase, N-terminal domain CFM90_04895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_04895 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_04895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_04905 PF03466 LysR substrate binding domain CFM90_04905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_04925 PF00378 Enoyl-CoA hydratase/isomerase CFM90_04930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFM90_04930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFM90_04930 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CFM90_04935 PF13417 Glutathione S-transferase, N-terminal domain CFM90_04935 PF14497 Glutathione S-transferase, C-terminal domain CFM90_04940 PF00155 Aminotransferase class I and II CFM90_04950 PF03883 Peroxide stress protein YaaA CFM90_04955 PF00246 Zinc carboxypeptidase CFM90_04955 PF18027 Cytosolic carboxypeptidase N-terminal domain CFM90_04965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_04980 PF00694 Aconitase C-terminal domain CFM90_04980 PF00330 Aconitase family (aconitate hydratase) CFM90_04985 PF03972 MmgE/PrpD family CFM90_05005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFM90_05005 PF00056 lactate/malate dehydrogenase, NAD binding domain CFM90_05010 PF00155 Aminotransferase class I and II CFM90_05010 PF00392 Bacterial regulatory proteins, gntR family CFM90_05020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CFM90_05025 PF02910 Fumarate reductase flavoprotein C-term CFM90_05025 PF00890 FAD binding domain CFM90_05030 PF13085 2Fe-2S iron-sulfur cluster binding domain CFM90_05035 PF03937 Flavinator of succinate dehydrogenase CFM90_05040 PF00285 Citrate synthase, C-terminal domain CFM90_05045 PF00330 Aconitase family (aconitate hydratase) CFM90_05050 PF00694 Aconitase C-terminal domain CFM90_05055 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_05060 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFM90_05060 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFM90_05070 PF01416 tRNA pseudouridine synthase CFM90_05075 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CFM90_05080 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_05085 PF01555 DNA methylase CFM90_05090 PF00290 Tryptophan synthase alpha chain CFM90_05095 PF01039 Carboxyl transferase domain CFM90_05095 PF17848 Acetyl-coA carboxylase zinc finger domain CFM90_05100 PF02875 Mur ligase family, glutamate ligase domain CFM90_05100 PF08245 Mur ligase middle domain CFM90_05115 PF00156 Phosphoribosyl transferase domain CFM90_05120 PF01061 ABC-2 type transporter CFM90_05125 PF00005 ABC transporter CFM90_05150 PF13006 Insertion element 4 transposase N-terminal CFM90_05150 PF01609 Transposase DDE domain CFM90_05165 PF03928 Haem-degrading CFM90_05175 PF02472 Biopolymer transport protein ExbD/TolR CFM90_05180 PF01618 MotA/TolQ/ExbB proton channel family CFM90_05190 PF17862 AAA+ lid domain CFM90_05190 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_05190 PF01434 Peptidase family M41 CFM90_05210 PF00375 Sodium:dicarboxylate symporter family CFM90_05215 PF01177 Asp/Glu/Hydantoin racemase CFM90_05225 PF03350 Uncharacterized protein family, UPF0114 CFM90_05230 PF00892 EamA-like transporter family CFM90_05235 PF13193 AMP-binding enzyme C-terminal domain CFM90_05235 PF00501 AMP-binding enzyme CFM90_05235 PF16177 Acetyl-coenzyme A synthetase N-terminus CFM90_05240 PF00474 Sodium:solute symporter family CFM90_05250 PF05598 Transposase domain (DUF772) CFM90_05250 PF01609 Transposase DDE domain CFM90_05260 PF00196 Bacterial regulatory proteins, luxR family CFM90_05260 PF03472 Autoinducer binding domain CFM90_05265 PF02203 Tar ligand binding domain homologue CFM90_05265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_05265 PF00672 HAMP domain CFM90_05270 PF00072 Response regulator receiver domain CFM90_05270 PF00990 Diguanylate cyclase, GGDEF domain CFM90_05285 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_05285 PF01799 [2Fe-2S] binding domain CFM90_05290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFM90_05305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_05310 PF00005 ABC transporter CFM90_05310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_05315 PF00005 ABC transporter CFM90_05315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_05320 PF12911 N-terminal TM domain of oligopeptide transport permease C CFM90_05320 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_05325 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_05330 PF13454 FAD-NAD(P)-binding CFM90_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_05335 PF03466 LysR substrate binding domain CFM90_05370 PF00551 Formyl transferase CFM90_05375 PF00929 Exonuclease CFM90_05385 PF01548 Transposase CFM90_05385 PF02371 Transposase IS116/IS110/IS902 family CFM90_05420 PF00248 Aldo/keto reductase family CFM90_05425 PF00264 Common central domain of tyrosinase CFM90_05440 PF00582 Universal stress protein family CFM90_05445 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_05475 PF00075 RNase H CFM90_05480 PF08241 Methyltransferase domain CFM90_05485 PF00753 Metallo-beta-lactamase superfamily CFM90_05485 PF16123 Hydroxyacylglutathione hydrolase C-terminus CFM90_05490 PF01464 Transglycosylase SLT domain CFM90_05490 PF01476 LysM domain CFM90_05495 PF13193 AMP-binding enzyme C-terminal domain CFM90_05495 PF00501 AMP-binding enzyme CFM90_05495 PF16177 Acetyl-coenzyme A synthetase N-terminus CFM90_05500 PF00117 Glutamine amidotransferase class-I CFM90_05500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CFM90_05505 PF01810 LysE type translocator CFM90_05510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFM90_05510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFM90_05510 PF02142 MGS-like domain CFM90_05515 PF03449 Transcription elongation factor, N-terminal CFM90_05515 PF01272 Transcription elongation factor, GreA/GreB, C-term CFM90_05525 PF01985 CRS1 / YhbY (CRM) domain CFM90_05530 PF01728 FtsJ-like methyltransferase CFM90_05535 PF01434 Peptidase family M41 CFM90_05535 PF17862 AAA+ lid domain CFM90_05535 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_05535 PF06480 FtsH Extracellular CFM90_05540 PF00809 Pterin binding enzyme CFM90_05545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFM90_05545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFM90_05545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFM90_05545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFM90_05550 PF12849 PBP superfamily domain CFM90_05555 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_05560 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_05565 PF00005 ABC transporter CFM90_05570 PF01895 PhoU domain CFM90_05575 PF00072 Response regulator receiver domain CFM90_05575 PF00486 Transcriptional regulatory protein, C terminal CFM90_05580 PF00512 His Kinase A (phospho-acceptor) domain CFM90_05580 PF11808 Phosphate regulon sensor protein PhoR CFM90_05580 PF00989 PAS fold CFM90_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_05585 PF13089 Polyphosphate kinase N-terminal domain CFM90_05585 PF02503 Polyphosphate kinase middle domain CFM90_05585 PF13090 Polyphosphate kinase C-terminal domain 2 CFM90_05585 PF17941 Polyphosphate kinase C-terminal domain 1 CFM90_05590 PF02541 Ppx/GppA phosphatase family CFM90_05615 PF01925 Sulfite exporter TauE/SafE CFM90_05630 PF00753 Metallo-beta-lactamase superfamily CFM90_05635 PF13188 PAS domain CFM90_05635 PF03707 Bacterial signalling protein N terminal repeat CFM90_05635 PF00990 Diguanylate cyclase, GGDEF domain CFM90_05635 PF00563 EAL domain CFM90_05645 PF00202 Aminotransferase class-III CFM90_05650 PF00202 Aminotransferase class-III CFM90_05695 PF01037 Lrp/AsnC ligand binding domain CFM90_05710 PF00106 short chain dehydrogenase CFM90_05715 PF13411 MerR HTH family regulatory protein CFM90_05720 PF07690 Major Facilitator Superfamily CFM90_05725 PF07690 Major Facilitator Superfamily CFM90_05730 PF01047 MarR family CFM90_05795 PF01565 FAD binding domain CFM90_05795 PF02913 FAD linked oxidases, C-terminal domain CFM90_05805 PF03358 NADPH-dependent FMN reductase CFM90_05810 PF03631 Virulence factor BrkB CFM90_05825 PF01053 Cys/Met metabolism PLP-dependent enzyme CFM90_05835 PF07690 Major Facilitator Superfamily CFM90_05840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFM90_05840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CFM90_05845 PF01264 Chorismate synthase CFM90_05860 PF00072 Response regulator receiver domain CFM90_05860 PF00196 Bacterial regulatory proteins, luxR family CFM90_05865 PF01144 Coenzyme A transferase CFM90_05870 PF01144 Coenzyme A transferase CFM90_05875 PF00106 short chain dehydrogenase CFM90_05885 PF01042 Endoribonuclease L-PSP CFM90_05890 PF02824 TGS domain CFM90_05890 PF04607 Region found in RelA / SpoT proteins CFM90_05890 PF13291 ACT domain CFM90_05900 PF03129 Anticodon binding domain CFM90_05900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFM90_05900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFM90_05900 PF02824 TGS domain CFM90_05905 PF00707 Translation initiation factor IF-3, C-terminal domain CFM90_05905 PF05198 Translation initiation factor IF-3, N-terminal domain CFM90_05910 PF01632 Ribosomal protein L35 CFM90_05915 PF00453 Ribosomal protein L20 CFM90_05920 PF01409 tRNA synthetases class II core domain (F) CFM90_05920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CFM90_05925 PF03484 tRNA synthetase B5 domain CFM90_05925 PF03147 Ferredoxin-fold anticodon binding domain CFM90_05925 PF01588 Putative tRNA binding domain CFM90_05925 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CFM90_05925 PF03483 B3/4 domain CFM90_05930 PF00216 Bacterial DNA-binding protein CFM90_05960 PF11799 impB/mucB/samB family C-terminal domain CFM90_05960 PF00817 impB/mucB/samB family CFM90_05965 PF13520 Amino acid permease CFM90_05980 PF03328 HpcH/HpaI aldolase/citrate lyase family CFM90_05985 PF01047 MarR family CFM90_05995 PF07969 Amidohydrolase family CFM90_06000 PF01432 Peptidase family M3 CFM90_06005 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFM90_06005 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFM90_06010 PF00072 Response regulator receiver domain CFM90_06010 PF00196 Bacterial regulatory proteins, luxR family CFM90_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_06015 PF00512 His Kinase A (phospho-acceptor) domain CFM90_06015 PF00989 PAS fold CFM90_06025 PF17831 Pyruvate dehydrogenase E1 component middle domain CFM90_06025 PF00456 Transketolase, thiamine diphosphate binding domain CFM90_06030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFM90_06030 PF00364 Biotin-requiring enzyme CFM90_06030 PF02817 e3 binding domain CFM90_06040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_06040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFM90_06050 PF09361 Phasin protein CFM90_06055 PF00850 Histone deacetylase domain CFM90_06075 PF00768 D-alanyl-D-alanine carboxypeptidase CFM90_06080 PF01614 Bacterial transcriptional regulator CFM90_06080 PF09339 IclR helix-turn-helix domain CFM90_06085 PF02754 Cysteine-rich domain CFM90_06090 PF02589 LUD domain CFM90_06090 PF13183 4Fe-4S dicluster domain CFM90_06090 PF11870 Domain of unknown function (DUF3390) CFM90_06105 PF04377 Arginine-tRNA-protein transferase, C terminus CFM90_06105 PF04376 Arginine-tRNA-protein transferase, N terminus CFM90_06110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CFM90_06130 PF01180 Dihydroorotate dehydrogenase CFM90_06140 PF02705 K+ potassium transporter CFM90_06150 PF16921 Tex protein YqgF-like domain CFM90_06150 PF00575 S1 RNA binding domain CFM90_06150 PF09371 Tex-like protein N-terminal domain CFM90_06150 PF17674 HHH domain CFM90_06165 PF04851 Type III restriction enzyme, res subunit CFM90_06165 PF13307 Helicase C-terminal domain CFM90_06170 PF13525 Outer membrane lipoprotein CFM90_06175 PF00849 RNA pseudouridylate synthase CFM90_06175 PF01479 S4 domain CFM90_06190 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CFM90_06195 PF00108 Thiolase, N-terminal domain CFM90_06195 PF02803 Thiolase, C-terminal domain CFM90_06200 PF00106 short chain dehydrogenase CFM90_06205 PF05233 PHB accumulation regulatory domain CFM90_06205 PF07879 PHB/PHA accumulation regulator DNA-binding domain CFM90_06210 PF01207 Dihydrouridine synthase (Dus) CFM90_06215 PF00919 Uncharacterized protein family UPF0004 CFM90_06215 PF18693 TRAM domain CFM90_06215 PF04055 Radical SAM superfamily CFM90_06220 PF02803 Thiolase, C-terminal domain CFM90_06220 PF00108 Thiolase, N-terminal domain CFM90_06230 PF01053 Cys/Met metabolism PLP-dependent enzyme CFM90_06240 PF01546 Peptidase family M20/M25/M40 CFM90_06240 PF07687 Peptidase dimerisation domain CFM90_06245 PF00270 DEAD/DEAH box helicase CFM90_06245 PF00271 Helicase conserved C-terminal domain CFM90_06245 PF17757 UvrB interaction domain CFM90_06245 PF03461 TRCF domain CFM90_06245 PF02559 CarD-like/TRCF domain CFM90_06250 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CFM90_06255 PF02542 YgbB family CFM90_06260 PF02627 Carboxymuconolactone decarboxylase family CFM90_06265 PF00578 AhpC/TSA family CFM90_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_06270 PF00512 His Kinase A (phospho-acceptor) domain CFM90_06270 PF00672 HAMP domain CFM90_06275 PF00072 Response regulator receiver domain CFM90_06275 PF00486 Transcriptional regulatory protein, C terminal CFM90_06300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_06305 PF00873 AcrB/AcrD/AcrF family CFM90_06320 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CFM90_06320 PF01266 FAD dependent oxidoreductase CFM90_06325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFM90_06325 PF05697 Bacterial trigger factor protein (TF) CFM90_06325 PF05698 Bacterial trigger factor protein (TF) C-terminus CFM90_06330 PF00574 Clp protease CFM90_06335 PF06689 ClpX C4-type zinc finger CFM90_06335 PF10431 C-terminal, D2-small domain, of ClpB protein CFM90_06335 PF07724 AAA domain (Cdc48 subfamily) CFM90_06340 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_06340 PF05362 Lon protease (S16) C-terminal proteolytic domain CFM90_06340 PF02190 ATP-dependent protease La (LON) substrate-binding domain CFM90_06345 PF00216 Bacterial DNA-binding protein CFM90_06365 PF13006 Insertion element 4 transposase N-terminal CFM90_06365 PF01609 Transposase DDE domain CFM90_06370 PF10502 Signal peptidase, peptidase S26 CFM90_06375 PF13472 GDSL-like Lipase/Acylhydrolase family CFM90_06380 PF00005 ABC transporter CFM90_06385 PF00342 Phosphoglucose isomerase CFM90_06390 PF01256 Carbohydrate kinase CFM90_06400 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CFM90_06400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CFM90_06400 PF02769 AIR synthase related protein, C-terminal domain CFM90_06420 PF04055 Radical SAM superfamily CFM90_06420 PF13186 Iron-sulfur cluster-binding domain CFM90_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_06440 PF03466 LysR substrate binding domain CFM90_06450 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_06455 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_06465 PF00005 ABC transporter CFM90_06465 PF08402 TOBE domain CFM90_06470 PF00512 His Kinase A (phospho-acceptor) domain CFM90_06470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_06470 PF08521 Two-component sensor kinase N-terminal CFM90_06475 PF00072 Response regulator receiver domain CFM90_06475 PF00486 Transcriptional regulatory protein, C terminal CFM90_06480 PF13609 Gram-negative porin CFM90_06485 PF00005 ABC transporter CFM90_06510 PF00005 ABC transporter CFM90_06520 PF01722 BolA-like protein CFM90_06525 PF04279 Intracellular septation protein A CFM90_06530 PF01641 SelR domain CFM90_06535 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CFM90_06540 PF00501 AMP-binding enzyme CFM90_06540 PF13193 AMP-binding enzyme C-terminal domain CFM90_06545 PF13458 Periplasmic binding protein CFM90_06550 PF02653 Branched-chain amino acid transport system / permease component CFM90_06560 PF00005 ABC transporter CFM90_06560 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_06565 PF00005 ABC transporter CFM90_06575 PF00295 Glycosyl hydrolases family 28 CFM90_06580 PF00324 Amino acid permease CFM90_06585 PF00324 Amino acid permease CFM90_06590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFM90_06590 PF00378 Enoyl-CoA hydratase/isomerase CFM90_06590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFM90_06595 PF00857 Isochorismatase family CFM90_06600 PF00108 Thiolase, N-terminal domain CFM90_06600 PF02803 Thiolase, C-terminal domain CFM90_06605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_06605 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_06605 PF12806 Acetyl-CoA dehydrogenase C-terminal like CFM90_06605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_06620 PF00144 Beta-lactamase CFM90_06625 PF00107 Zinc-binding dehydrogenase CFM90_06625 PF16884 N-terminal domain of oxidoreductase CFM90_06630 PF00596 Class II Aldolase and Adducin N-terminal domain CFM90_06640 PF00106 short chain dehydrogenase CFM90_06645 PF00561 alpha/beta hydrolase fold CFM90_06650 PF00465 Iron-containing alcohol dehydrogenase CFM90_06655 PF07859 alpha/beta hydrolase fold CFM90_06680 PF01609 Transposase DDE domain CFM90_06680 PF05598 Transposase domain (DUF772) CFM90_06685 PF08479 POTRA domain, ShlB-type CFM90_06685 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_06685 PF17287 POTRA domain CFM90_06700 PF01571 Aminomethyltransferase folate-binding domain CFM90_06705 PF02618 YceG-like family CFM90_06710 PF02223 Thymidylate kinase CFM90_06715 PF09115 DNA polymerase III, delta subunit, C terminal CFM90_06725 PF01026 TatD related DNase CFM90_06735 PF03781 Sulfatase-modifying factor enzyme 1 CFM90_06735 PF12867 DinB superfamily CFM90_06740 PF00356 Bacterial regulatory proteins, lacI family CFM90_06745 PF01547 Bacterial extracellular solute-binding protein CFM90_06755 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_06760 PF00005 ABC transporter CFM90_06760 PF08402 TOBE domain CFM90_06765 PF00149 Calcineurin-like phosphoesterase CFM90_06770 PF01510 N-acetylmuramoyl-L-alanine amidase CFM90_06775 PF00676 Dehydrogenase E1 component CFM90_06780 PF02779 Transketolase, pyrimidine binding domain CFM90_06780 PF02780 Transketolase, C-terminal domain CFM90_06785 PF00364 Biotin-requiring enzyme CFM90_06785 PF02817 e3 binding domain CFM90_06785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFM90_06800 PF01965 DJ-1/PfpI family CFM90_06810 PF08241 Methyltransferase domain CFM90_06820 PF00668 Condensation domain CFM90_06820 PF00501 AMP-binding enzyme CFM90_06820 PF08242 Methyltransferase domain CFM90_06820 PF00550 Phosphopantetheine attachment site CFM90_06825 PF07715 TonB-dependent Receptor Plug Domain CFM90_06825 PF00593 TonB dependent receptor CFM90_06830 PF00664 ABC transporter transmembrane region CFM90_06830 PF00005 ABC transporter CFM90_06830 PF08021 Siderophore-interacting FAD-binding domain CFM90_06830 PF04954 Siderophore-interacting protein CFM90_06835 PF00005 ABC transporter CFM90_06835 PF08021 Siderophore-interacting FAD-binding domain CFM90_06835 PF04954 Siderophore-interacting protein CFM90_06835 PF00664 ABC transporter transmembrane region CFM90_06840 PF16197 Ketoacyl-synthetase C-terminal extension CFM90_06840 PF00668 Condensation domain CFM90_06840 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_06840 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_06840 PF00698 Acyl transferase domain CFM90_06840 PF00550 Phosphopantetheine attachment site CFM90_06845 PF00501 AMP-binding enzyme CFM90_06845 PF00668 Condensation domain CFM90_06845 PF08242 Methyltransferase domain CFM90_06845 PF00550 Phosphopantetheine attachment site CFM90_06855 PF02311 AraC-like ligand binding domain CFM90_06855 PF12833 Helix-turn-helix domain CFM90_06860 PF03377 TAL effector repeat CFM90_06865 PF00583 Acetyltransferase (GNAT) family CFM90_06875 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CFM90_06900 PF17645 Arylmalonate decarboxylase CFM90_06910 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFM90_06915 PF07883 Cupin domain CFM90_06920 PF01494 FAD binding domain CFM90_06940 PF14525 AraC-binding-like domain CFM90_06940 PF12833 Helix-turn-helix domain CFM90_06955 PF04199 Putative cyclase CFM90_06960 PF01613 Flavin reductase like domain CFM90_06965 PF17885 Styrene monooxygenase A putative substrate binding domain CFM90_06985 PF00155 Aminotransferase class I and II CFM90_07040 PF07690 Major Facilitator Superfamily CFM90_07045 PF13533 Biotin-lipoyl like CFM90_07050 PF02321 Outer membrane efflux protein CFM90_07065 PF00392 Bacterial regulatory proteins, gntR family CFM90_07065 PF00155 Aminotransferase class I and II CFM90_07070 PF06481 COX Aromatic Rich Motif CFM90_07070 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFM90_07075 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_07080 PF00510 Cytochrome c oxidase subunit III CFM90_07125 PF00155 Aminotransferase class I and II CFM90_07130 PF00202 Aminotransferase class-III CFM90_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_07155 PF03466 LysR substrate binding domain CFM90_07160 PF05981 CreA protein CFM90_07165 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_07165 PF01799 [2Fe-2S] binding domain CFM90_07170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CFM90_07170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFM90_07195 PF13478 XdhC Rossmann domain CFM90_07195 PF02625 XdhC and CoxI family CFM90_07205 PF02308 MgtC family CFM90_07210 PF00672 HAMP domain CFM90_07210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_07210 PF02203 Tar ligand binding domain homologue CFM90_07220 PF00723 Glycosyl hydrolases family 15 CFM90_07230 PF00171 Aldehyde dehydrogenase family CFM90_07245 PF12848 ABC transporter CFM90_07245 PF00005 ABC transporter CFM90_07250 PF02016 LD-carboxypeptidase N-terminal domain CFM90_07250 PF17676 LD-carboxypeptidase C-terminal domain CFM90_07255 PF14437 MafB19-like deaminase CFM90_07260 PF01242 6-pyruvoyl tetrahydropterin synthase CFM90_07285 PF13657 HipA N-terminal domain CFM90_07285 PF07804 HipA-like C-terminal domain CFM90_07305 PF00775 Dioxygenase CFM90_07310 PF00775 Dioxygenase CFM90_07310 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CFM90_07315 PF03466 LysR substrate binding domain CFM90_07315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_07365 PF02540 NAD synthase CFM90_07365 PF00117 Glutamine amidotransferase class-I CFM90_07365 PF00958 GMP synthase C terminal domain CFM90_07375 PF00571 CBS domain CFM90_07375 PF00478 IMP dehydrogenase / GMP reductase domain CFM90_07380 PF00892 EamA-like transporter family CFM90_07390 PF03658 RnfH family Ubiquitin CFM90_07395 PF03364 Polyketide cyclase / dehydrase and lipid transport CFM90_07400 PF01668 SmpB protein CFM90_07405 PF16200 C-terminal region of band_7 CFM90_07405 PF01145 SPFH domain / Band 7 family CFM90_07415 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CFM90_07415 PF00391 PEP-utilising enzyme, mobile domain CFM90_07415 PF02896 PEP-utilising enzyme, TIM barrel domain CFM90_07420 PF03618 Kinase/pyrophosphorylase CFM90_07425 PF00588 SpoU rRNA Methylase family CFM90_07425 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFM90_07430 PF01351 Ribonuclease HII CFM90_07435 PF02684 Lipid-A-disaccharide synthetase CFM90_07440 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CFM90_07440 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_07445 PF07977 FabA-like domain CFM90_07450 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CFM90_07450 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_07455 PF03938 Outer membrane protein (OmpH-like) CFM90_07460 PF07244 Surface antigen variable number repeat CFM90_07460 PF01103 Surface antigen CFM90_07465 PF17820 PDZ domain CFM90_07465 PF02163 Peptidase family M50 CFM90_07470 PF13288 DXP reductoisomerase C-terminal domain CFM90_07470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CFM90_07470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CFM90_07480 PF01255 Putative undecaprenyl diphosphate synthase CFM90_07485 PF01765 Ribosome recycling factor CFM90_07490 PF00696 Amino acid kinase family CFM90_07495 PF00889 Elongation factor TS CFM90_07500 PF00318 Ribosomal protein S2 CFM90_07505 PF00557 Metallopeptidase family M24 CFM90_07510 PF01909 Nucleotidyltransferase domain CFM90_07510 PF01966 HD domain CFM90_07510 PF08335 GlnD PII-uridylyltransferase CFM90_07515 PF00849 RNA pseudouridylate synthase CFM90_07515 PF01479 S4 domain CFM90_07525 PF01327 Polypeptide deformylase CFM90_07530 PF00533 BRCA1 C Terminus (BRCT) domain CFM90_07530 PF12826 Helix-hairpin-helix motif CFM90_07530 PF03120 NAD-dependent DNA ligase OB-fold domain CFM90_07530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CFM90_07530 PF01653 NAD-dependent DNA ligase adenylation domain CFM90_07540 PF02463 RecF/RecN/SMC N terminal domain CFM90_07540 PF06470 SMC proteins Flexible Hinge Domain CFM90_07545 PF00561 alpha/beta hydrolase fold CFM90_07555 PF00155 Aminotransferase class I and II CFM90_07560 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CFM90_07560 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_07560 PF14602 Hexapeptide repeat of succinyl-transferase CFM90_07570 PF03960 ArsC family CFM90_07575 PF07687 Peptidase dimerisation domain CFM90_07575 PF01546 Peptidase family M20/M25/M40 CFM90_07585 PF05175 Methyltransferase small domain CFM90_07590 PF01227 GTP cyclohydrolase I CFM90_07615 PF12911 N-terminal TM domain of oligopeptide transport permease C CFM90_07615 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_07620 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_07625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_07630 PF00005 ABC transporter CFM90_07630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_07635 PF01112 Asparaginase CFM90_07645 PF12848 ABC transporter CFM90_07645 PF00005 ABC transporter CFM90_07650 PF02515 CoA-transferase family III CFM90_07655 PF04463 Protein of unknown function (DUF523) CFM90_07660 PF02600 Disulfide bond formation protein DsbB CFM90_07665 PF18073 Rubredoxin metal binding domain CFM90_07670 PF00842 Alanine racemase, C-terminal domain CFM90_07670 PF01168 Alanine racemase, N-terminal domain CFM90_07675 PF07690 Major Facilitator Superfamily CFM90_07680 PF03167 Uracil DNA glycosylase superfamily CFM90_07685 PF00583 Acetyltransferase (GNAT) family CFM90_07690 PF00814 Glycoprotease family CFM90_07760 PF04002 RadC-like JAB domain CFM90_07770 PF06067 Domain of unknown function (DUF932) CFM90_07775 PF02195 ParB-like nuclease domain CFM90_07795 PF05284 Protein of unknown function (DUF736) CFM90_07800 PF01381 Helix-turn-helix CFM90_07830 PF13614 AAA domain CFM90_07845 PF10502 Signal peptidase, peptidase S26 CFM90_07860 PF03466 LysR substrate binding domain CFM90_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_07870 PF13417 Glutathione S-transferase, N-terminal domain CFM90_07870 PF14497 Glutathione S-transferase, C-terminal domain CFM90_07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_07875 PF03466 LysR substrate binding domain CFM90_07885 PF02534 Type IV secretory system Conjugative DNA transfer CFM90_07895 PF00437 Type II/IV secretion system protein CFM90_07900 PF04956 TrbC/VIRB2 family CFM90_07910 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CFM90_07930 PF03524 Conjugal transfer protein CFM90_07935 PF03743 Bacterial conjugation TrbI-like protein CFM90_07945 PF07690 Major Facilitator Superfamily CFM90_07955 PF01274 Malate synthase CFM90_07970 PF03466 LysR substrate binding domain CFM90_07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_07980 PF00463 Isocitrate lyase family CFM90_08000 PF03737 Aldolase/RraA CFM90_08005 PF00205 Thiamine pyrophosphate enzyme, central domain CFM90_08005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFM90_08005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFM90_08010 PF00072 Response regulator receiver domain CFM90_08010 PF04397 LytTr DNA-binding domain CFM90_08015 PF07694 5TMR of 5TMR-LYT CFM90_08015 PF06580 Histidine kinase CFM90_08030 PF03466 LysR substrate binding domain CFM90_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_08035 PF00005 ABC transporter CFM90_08035 PF12857 TOBE-like domain CFM90_08035 PF17850 CysA C-terminal regulatory domain CFM90_08040 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08045 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08060 PF00005 ABC transporter CFM90_08060 PF03459 TOBE domain CFM90_08065 PF00005 ABC transporter CFM90_08070 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08075 PF00296 Luciferase-like monooxygenase CFM90_08080 PF09084 NMT1/THI5 like CFM90_08085 PF03358 NADPH-dependent FMN reductase CFM90_08095 PF06826 Predicted Permease Membrane Region CFM90_08100 PF00390 Malic enzyme, N-terminal domain CFM90_08100 PF03949 Malic enzyme, NAD binding domain CFM90_08105 PF01070 FMN-dependent dehydrogenase CFM90_08110 PF02954 Bacterial regulatory protein, Fis family CFM90_08110 PF00158 Sigma-54 interaction domain CFM90_08110 PF00072 Response regulator receiver domain CFM90_08115 PF00512 His Kinase A (phospho-acceptor) domain CFM90_08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_08125 PF00890 FAD binding domain CFM90_08125 PF02910 Fumarate reductase flavoprotein C-term CFM90_08130 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CFM90_08130 PF10531 SLBB domain CFM90_08130 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CFM90_08135 PF02861 Clp amino terminal domain, pathogenicity island component CFM90_08135 PF17871 AAA lid domain CFM90_08135 PF07724 AAA domain (Cdc48 subfamily) CFM90_08135 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_08135 PF10431 C-terminal, D2-small domain, of ClpB protein CFM90_08140 PF10605 3HB-oligomer hydrolase (3HBOH) CFM90_08145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFM90_08150 PF02391 MoaE protein CFM90_08155 PF02597 ThiS family CFM90_08160 PF00994 Probable molybdopterin binding domain CFM90_08160 PF03453 MoeA N-terminal region (domain I and II) CFM90_08160 PF03454 MoeA C-terminal region (domain IV) CFM90_08165 PF03167 Uracil DNA glycosylase superfamily CFM90_08170 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_08170 PF14821 Threonine synthase N terminus CFM90_08175 PF03447 Homoserine dehydrogenase, NAD binding domain CFM90_08175 PF01842 ACT domain CFM90_08175 PF00742 Homoserine dehydrogenase CFM90_08180 PF00155 Aminotransferase class I and II CFM90_08190 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CFM90_08200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFM90_08205 PF00535 Glycosyl transferase family 2 CFM90_08210 PF00551 Formyl transferase CFM90_08210 PF02911 Formyl transferase, C-terminal domain CFM90_08210 PF01370 NAD dependent epimerase/dehydratase family CFM90_08215 PF00551 Formyl transferase CFM90_08215 PF02911 Formyl transferase, C-terminal domain CFM90_08215 PF01370 NAD dependent epimerase/dehydratase family CFM90_08220 PF01522 Polysaccharide deacetylase CFM90_08225 PF00578 AhpC/TSA family CFM90_08230 PF02562 PhoH-like protein CFM90_08230 PF13638 PIN domain CFM90_08240 PF00877 NlpC/P60 family CFM90_08245 PF01384 Phosphate transporter family CFM90_08255 PF03796 DnaB-like helicase C terminal domain CFM90_08255 PF00772 DnaB-like helicase N terminal domain CFM90_08260 PF03948 Ribosomal protein L9, C-terminal domain CFM90_08260 PF01281 Ribosomal protein L9, N-terminal domain CFM90_08265 PF01084 Ribosomal protein S18 CFM90_08275 PF01250 Ribosomal protein S6 CFM90_08280 PF17763 Glutaminase/Asparaginase C-terminal domain CFM90_08280 PF00710 Asparaginase, N-terminal CFM90_08285 PF00970 Oxidoreductase FAD-binding domain CFM90_08285 PF00175 Oxidoreductase NAD-binding domain CFM90_08290 PF01726 LexA DNA binding domain CFM90_08290 PF00717 Peptidase S24-like CFM90_08305 PF01546 Peptidase family M20/M25/M40 CFM90_08305 PF07687 Peptidase dimerisation domain CFM90_08320 PF01207 Dihydrouridine synthase (Dus) CFM90_08325 PF00378 Enoyl-CoA hydratase/isomerase CFM90_08340 PF01047 MarR family CFM90_08345 PF02321 Outer membrane efflux protein CFM90_08350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_08350 PF00529 HlyD membrane-fusion protein of T1SS CFM90_08355 PF07690 Major Facilitator Superfamily CFM90_08360 PF09157 Pseudouridine synthase II TruB, C-terminal CFM90_08360 PF01509 TruB family pseudouridylate synthase (N terminal domain) CFM90_08360 PF16198 tRNA pseudouridylate synthase B C-terminal domain CFM90_08365 PF02033 Ribosome-binding factor A CFM90_08370 PF11987 Translation-initiation factor 2 CFM90_08370 PF08364 Bacterial translation initiation factor IF-2 associated region CFM90_08370 PF00009 Elongation factor Tu GTP binding domain CFM90_08370 PF04760 Translation initiation factor IF-2, N-terminal region CFM90_08375 PF08529 NusA N-terminal domain CFM90_08375 PF13184 NusA-like KH domain CFM90_08380 PF02576 RimP N-terminal domain CFM90_08380 PF17384 RimP C-terminal SH3 domain CFM90_08385 PF00849 RNA pseudouridylate synthase CFM90_08385 PF01479 S4 domain CFM90_08390 PF04079 Segregation and condensation complex subunit ScpB CFM90_08400 PF00027 Cyclic nucleotide-binding domain CFM90_08400 PF13545 Crp-like helix-turn-helix domain CFM90_08415 PF12801 4Fe-4S binding domain CFM90_08415 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CFM90_08415 PF13746 4Fe-4S dicluster domain CFM90_08420 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CFM90_08420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFM90_08435 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_08445 PF00403 Heavy-metal-associated domain CFM90_08455 PF03969 AFG1-like ATPase CFM90_08460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFM90_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_08465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFM90_08465 PF02817 e3 binding domain CFM90_08465 PF00364 Biotin-requiring enzyme CFM90_08470 PF00676 Dehydrogenase E1 component CFM90_08470 PF16870 2-oxoglutarate dehydrogenase C-terminal CFM90_08470 PF02779 Transketolase, pyrimidine binding domain CFM90_08470 PF16078 2-oxoglutarate dehydrogenase N-terminus CFM90_08475 PF03009 Glycerophosphoryl diester phosphodiesterase family CFM90_08480 PF17912 MalK OB fold domain CFM90_08480 PF00005 ABC transporter CFM90_08485 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08490 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08495 PF13416 Bacterial extracellular solute-binding protein CFM90_08510 PF00158 Sigma-54 interaction domain CFM90_08510 PF00072 Response regulator receiver domain CFM90_08510 PF02954 Bacterial regulatory protein, Fis family CFM90_08515 PF00512 His Kinase A (phospho-acceptor) domain CFM90_08515 PF00989 PAS fold CFM90_08515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_08560 PF11898 Domain of unknown function (DUF3418) CFM90_08560 PF00271 Helicase conserved C-terminal domain CFM90_08560 PF00270 DEAD/DEAH box helicase CFM90_08560 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CFM90_08560 PF04408 Helicase associated domain (HA2) CFM90_08565 PF00696 Amino acid kinase family CFM90_08565 PF00583 Acetyltransferase (GNAT) family CFM90_08570 PF01380 SIS domain CFM90_08570 PF01418 Helix-turn-helix domain, rpiR family CFM90_08575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFM90_08575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_08585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_08585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFM90_08595 PF01261 Xylose isomerase-like TIM barrel CFM90_08600 PF02653 Branched-chain amino acid transport system / permease component CFM90_08605 PF00005 ABC transporter CFM90_08610 PF13407 Periplasmic binding protein domain CFM90_08615 PF00294 pfkB family carbohydrate kinase CFM90_08620 PF00205 Thiamine pyrophosphate enzyme, central domain CFM90_08620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFM90_08620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFM90_08625 PF01261 Xylose isomerase-like TIM barrel CFM90_08630 PF04962 KduI/IolB family CFM90_08635 PF00267 Gram-negative porin CFM90_08640 PF04362 Bacterial Fe(2+) trafficking CFM90_08645 PF00672 HAMP domain CFM90_08645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_08650 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CFM90_08655 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CFM90_08660 PF00923 Transaldolase/Fructose-6-phosphate aldolase CFM90_08665 PF02146 Sir2 family CFM90_08670 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFM90_08670 PF00588 SpoU rRNA Methylase family CFM90_08675 PF17876 Cold shock domain CFM90_08675 PF08461 Ribonuclease R winged-helix domain CFM90_08675 PF08206 Ribonuclease B OB domain CFM90_08675 PF00773 RNB domain CFM90_08675 PF00575 S1 RNA binding domain CFM90_08685 PF00156 Phosphoribosyl transferase domain CFM90_08690 PF00709 Adenylosuccinate synthetase CFM90_08695 PF13393 Histidyl-tRNA synthetase CFM90_08705 PF01145 SPFH domain / Band 7 family CFM90_08710 PF12221 Bacterial membrane protein N terminal CFM90_08710 PF01145 SPFH domain / Band 7 family CFM90_08715 PF13167 GTP-binding GTPase N-terminal CFM90_08715 PF16360 GTP-binding GTPase Middle Region CFM90_08715 PF01926 50S ribosome-binding GTPase CFM90_08720 PF17209 Hfq protein CFM90_08725 PF01926 50S ribosome-binding GTPase CFM90_08725 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CFM90_08730 PF13360 PQQ-like domain CFM90_08735 PF09976 Tetratricopeptide repeat-like domain CFM90_08740 PF03129 Anticodon binding domain CFM90_08740 PF13393 Histidyl-tRNA synthetase CFM90_08745 PF04551 GcpE protein CFM90_08760 PF04055 Radical SAM superfamily CFM90_08765 PF00334 Nucleoside diphosphate kinase CFM90_08770 PF01027 Inhibitor of apoptosis-promoting Bax1 CFM90_08775 PF05958 tRNA (Uracil-5-)-methyltransferase CFM90_08775 PF01938 TRAM domain CFM90_08785 PF00140 Sigma-70 factor, region 1.2 CFM90_08785 PF04542 Sigma-70 region 2 CFM90_08785 PF04539 Sigma-70 region 3 CFM90_08785 PF04545 Sigma-70, region 4 CFM90_08790 PF01551 Peptidase family M23 CFM90_08790 PF01476 LysM domain CFM90_08800 PF01975 Survival protein SurE CFM90_08805 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_08805 PF16197 Ketoacyl-synthetase C-terminal extension CFM90_08805 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_08805 PF00107 Zinc-binding dehydrogenase CFM90_08805 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_08805 PF08659 KR domain CFM90_08805 PF00698 Acyl transferase domain CFM90_08805 PF14765 Polyketide synthase dehydratase CFM90_08805 PF00550 Phosphopantetheine attachment site CFM90_08810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFM90_08815 PF00440 Bacterial regulatory proteins, tetR family CFM90_08815 PF16925 Tetracyclin repressor-like, C-terminal domain CFM90_08820 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08825 PF00005 ABC transporter CFM90_08835 PF02515 CoA-transferase family III CFM90_08850 PF02132 RecR protein CFM90_08850 PF13662 Toprim domain CFM90_08855 PF02575 YbaB/EbfC DNA-binding family CFM90_08860 PF12169 DNA polymerase III subunits gamma and tau domain III CFM90_08860 PF12170 DNA polymerase III tau subunit V interacting with alpha CFM90_08860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CFM90_08870 PF13361 UvrD-like helicase C-terminal domain CFM90_08870 PF00580 UvrD/REP helicase N-terminal domain CFM90_08870 PF12705 PD-(D/E)XK nuclease superfamily CFM90_08880 PF00085 Thioredoxin CFM90_08885 PF07497 Rho termination factor, RNA-binding domain CFM90_08885 PF07498 Rho termination factor, N-terminal domain CFM90_08885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFM90_08890 PF00158 Sigma-54 interaction domain CFM90_08890 PF00072 Response regulator receiver domain CFM90_08890 PF02954 Bacterial regulatory protein, Fis family CFM90_08895 PF00196 Bacterial regulatory proteins, luxR family CFM90_08895 PF00072 Response regulator receiver domain CFM90_08900 PF06167 Glucose-regulated metallo-peptidase M90 CFM90_08910 PF01197 Ribosomal protein L31 CFM90_08920 PF01554 MatE CFM90_08955 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFM90_08960 PF01734 Patatin-like phospholipase CFM90_08965 PF00877 NlpC/P60 family CFM90_08970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFM90_08970 PF00005 ABC transporter CFM90_08975 PF12911 N-terminal TM domain of oligopeptide transport permease C CFM90_08975 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08980 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_08985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_09000 PF00696 Amino acid kinase family CFM90_09000 PF13840 ACT domain CFM90_09000 PF01842 ACT domain CFM90_09005 PF09179 TilS substrate binding domain CFM90_09005 PF01171 PP-loop family CFM90_09005 PF11734 TilS substrate C-terminal domain CFM90_09010 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CFM90_09015 PF00730 HhH-GPD superfamily base excision DNA repair protein CFM90_09020 PF09190 DALR domain CFM90_09020 PF01406 tRNA synthetases class I (C) catalytic domain CFM90_09030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFM90_09035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFM90_09040 PF00149 Calcineurin-like phosphoesterase CFM90_09045 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_09050 PF00588 SpoU rRNA Methylase family CFM90_09055 PF00459 Inositol monophosphatase family CFM90_09060 PF01381 Helix-turn-helix CFM90_09060 PF08671 Anti-repressor SinI CFM90_09065 PF00117 Glutamine amidotransferase class-I CFM90_09070 PF03475 3-alpha domain CFM90_09070 PF03473 MOSC domain CFM90_09075 PF02203 Tar ligand binding domain homologue CFM90_09075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_09075 PF00672 HAMP domain CFM90_09080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_09080 PF17200 Single Cache domain 2 CFM90_09080 PF00672 HAMP domain CFM90_09085 PF00248 Aldo/keto reductase family CFM90_09090 PF07690 Major Facilitator Superfamily CFM90_09095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_09095 PF03466 LysR substrate binding domain CFM90_09220 PF07484 Phage Tail Collar Domain CFM90_09275 PF00145 C-5 cytosine-specific DNA methylase CFM90_09330 PF05188 MutS domain II CFM90_09330 PF05192 MutS domain III CFM90_09330 PF05190 MutS family domain IV CFM90_09330 PF00488 MutS domain V CFM90_09330 PF01624 MutS domain I CFM90_09340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFM90_09345 PF08007 Cupin superfamily protein CFM90_09355 PF12706 Beta-lactamase superfamily domain CFM90_09355 PF00753 Metallo-beta-lactamase superfamily CFM90_09360 PF06804 NlpB/DapX lipoprotein CFM90_09365 PF00701 Dihydrodipicolinate synthetase family CFM90_09375 PF00579 tRNA synthetases class I (W and Y) CFM90_09380 PF02163 Peptidase family M50 CFM90_09385 PF01300 Telomere recombination CFM90_09390 PF02811 PHP domain CFM90_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_09415 PF00561 alpha/beta hydrolase fold CFM90_09420 PF04305 Protein of unknown function (DUF455) CFM90_09425 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_09430 PF01430 Hsp33 protein CFM90_09440 PF04977 Septum formation initiator CFM90_09445 PF00113 Enolase, C-terminal TIM barrel domain CFM90_09445 PF03952 Enolase, N-terminal domain CFM90_09455 PF00793 DAHP synthetase I family CFM90_09460 PF00117 Glutamine amidotransferase class-I CFM90_09460 PF06418 CTP synthase N-terminus CFM90_09465 PF00561 alpha/beta hydrolase fold CFM90_09465 PF08386 TAP-like protein CFM90_09475 PF01841 Transglutaminase-like superfamily CFM90_09475 PF08379 Bacterial transglutaminase-like N-terminal region CFM90_09485 PF14403 Circularly permuted ATP-grasp type 2 CFM90_09490 PF00753 Metallo-beta-lactamase superfamily CFM90_09490 PF03772 Competence protein CFM90_09495 PF01026 TatD related DNase CFM90_09500 PF00005 ABC transporter CFM90_09505 PF02687 FtsX-like permease family CFM90_09505 PF12704 MacB-like periplasmic core domain CFM90_09515 PF01368 DHH family CFM90_09515 PF02272 DHHA1 domain CFM90_09515 PF17768 RecJ OB domain CFM90_09520 PF11953 Domain of unknown function (DUF3470) CFM90_09520 PF00037 4Fe-4S binding domain CFM90_09530 PF01381 Helix-turn-helix CFM90_09535 PF02190 ATP-dependent protease La (LON) substrate-binding domain CFM90_09535 PF05362 Lon protease (S16) C-terminal proteolytic domain CFM90_09535 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_09545 PF05598 Transposase domain (DUF772) CFM90_09545 PF01609 Transposase DDE domain CFM90_09580 PF01695 IstB-like ATP binding protein CFM90_09585 PF00665 Integrase core domain CFM90_09595 PF05598 Transposase domain (DUF772) CFM90_09595 PF01609 Transposase DDE domain CFM90_09655 PF02899 Phage integrase, N-terminal SAM-like domain CFM90_09655 PF00589 Phage integrase family CFM90_09675 PF03601 Conserved hypothetical protein 698 CFM90_09680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_09680 PF03466 LysR substrate binding domain CFM90_09705 PF00551 Formyl transferase CFM90_09720 PF01571 Aminomethyltransferase folate-binding domain CFM90_09720 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFM90_09720 PF17806 Sarcosine oxidase A3 domain CFM90_09720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_09725 PF04267 Sarcosine oxidase, delta subunit family CFM90_09730 PF01266 FAD dependent oxidoreductase CFM90_09740 PF12833 Helix-turn-helix domain CFM90_09740 PF01965 DJ-1/PfpI family CFM90_09745 PF01381 Helix-turn-helix CFM90_09760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_09760 PF03466 LysR substrate binding domain CFM90_09765 PF07690 Major Facilitator Superfamily CFM90_09770 PF03466 LysR substrate binding domain CFM90_09770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_09775 PF00970 Oxidoreductase FAD-binding domain CFM90_09775 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_09775 PF00175 Oxidoreductase NAD-binding domain CFM90_09780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CFM90_09780 PF00355 Rieske [2Fe-2S] domain CFM90_09785 PF13577 SnoaL-like domain CFM90_09790 PF00355 Rieske [2Fe-2S] domain CFM90_09795 PF07883 Cupin domain CFM90_09800 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFM90_09805 PF14497 Glutathione S-transferase, C-terminal domain CFM90_09805 PF02798 Glutathione S-transferase, N-terminal domain CFM90_09810 PF13609 Gram-negative porin CFM90_09820 PF13609 Gram-negative porin CFM90_09825 PF17137 Domain of unknown function (DUF5110) CFM90_09825 PF01055 Glycosyl hydrolases family 31 CFM90_09825 PF13802 Galactose mutarotase-like CFM90_09825 PF16338 Domain of unknown function (DUF4968) CFM90_09830 PF07690 Major Facilitator Superfamily CFM90_09835 PF13378 Enolase C-terminal domain-like CFM90_09835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFM90_09840 PF00392 Bacterial regulatory proteins, gntR family CFM90_09840 PF07729 FCD domain CFM90_09850 PF00072 Response regulator receiver domain CFM90_09850 PF00486 Transcriptional regulatory protein, C terminal CFM90_09860 PF16736 Single Cache-like CFM90_09860 PF00989 PAS fold CFM90_09860 PF00512 His Kinase A (phospho-acceptor) domain CFM90_09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_09870 PF00486 Transcriptional regulatory protein, C terminal CFM90_09870 PF00072 Response regulator receiver domain CFM90_09890 PF01066 CDP-alcohol phosphatidyltransferase CFM90_09895 PF08459 UvrC Helix-hairpin-helix N-terminal CFM90_09895 PF02151 UvrB/uvrC motif CFM90_09895 PF01541 GIY-YIG catalytic domain CFM90_09905 PF01132 Elongation factor P (EF-P) OB domain CFM90_09905 PF08207 Elongation factor P (EF-P) KOW-like domain CFM90_09905 PF09285 Elongation factor P, C-terminal CFM90_09910 PF00933 Glycosyl hydrolase family 3 N terminal domain CFM90_09915 PF01648 4'-phosphopantetheinyl transferase superfamily CFM90_09920 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CFM90_09925 PF11967 Recombination protein O N terminal CFM90_09925 PF02565 Recombination protein O C terminal CFM90_09930 PF07650 KH domain CFM90_09930 PF01926 50S ribosome-binding GTPase CFM90_09935 PF00035 Double-stranded RNA binding motif CFM90_09935 PF14622 Ribonuclease-III-like CFM90_09945 PF10502 Signal peptidase, peptidase S26 CFM90_09950 PF06421 GTP-binding protein LepA C-terminus CFM90_09950 PF03144 Elongation factor Tu domain 2 CFM90_09950 PF00679 Elongation factor G C-terminus CFM90_09950 PF00009 Elongation factor Tu GTP binding domain CFM90_09960 PF13180 PDZ domain CFM90_09960 PF17820 PDZ domain CFM90_09975 PF08281 Sigma-70, region 4 CFM90_09975 PF04542 Sigma-70 region 2 CFM90_09985 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_09985 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_09990 PF00550 Phosphopantetheine attachment site CFM90_10000 PF00698 Acyl transferase domain CFM90_10005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFM90_10005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFM90_10010 PF02504 Fatty acid synthesis protein CFM90_10015 PF01783 Ribosomal L32p protein family CFM90_10020 PF02620 Large ribosomal RNA subunit accumulation protein YceD CFM90_10025 PF02545 Maf-like protein CFM90_10030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_10035 PF01343 Peptidase family S49 CFM90_10035 PF06965 Na+/H+ antiporter 1 CFM90_10045 PF13419 Haloacid dehalogenase-like hydrolase CFM90_10050 PF01479 S4 domain CFM90_10050 PF00849 RNA pseudouridylate synthase CFM90_10055 PF12111 Polyribonucleotide phosphorylase C terminal CFM90_10055 PF00575 S1 RNA binding domain CFM90_10055 PF10150 Ribonuclease E/G family CFM90_10060 PF04055 Radical SAM superfamily CFM90_10060 PF06463 Molybdenum Cofactor Synthesis C CFM90_10065 PF12804 MobA-like NTP transferase domain CFM90_10070 PF03453 MoeA N-terminal region (domain I and II) CFM90_10070 PF03454 MoeA C-terminal region (domain IV) CFM90_10070 PF00994 Probable molybdopterin binding domain CFM90_10080 PF02646 RmuC family CFM90_10085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFM90_10085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_10095 PF02589 LUD domain CFM90_10100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CFM90_10100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CFM90_10110 PF00106 short chain dehydrogenase CFM90_10115 PF00152 tRNA synthetases class II (D, K and N) CFM90_10115 PF01336 OB-fold nucleic acid binding domain CFM90_10125 PF13006 Insertion element 4 transposase N-terminal CFM90_10125 PF01609 Transposase DDE domain CFM90_10130 PF04384 Iron-sulphur cluster assembly CFM90_10135 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_10140 PF00012 Hsp70 protein CFM90_10145 PF07743 HSCB C-terminal oligomerisation domain CFM90_10145 PF00226 DnaJ domain CFM90_10155 PF01521 Iron-sulphur cluster biosynthesis CFM90_10160 PF01592 NifU-like N terminal domain CFM90_10165 PF00266 Aminotransferase class-V CFM90_10170 PF02082 Transcriptional regulator CFM90_10175 PF13407 Periplasmic binding protein domain CFM90_10180 PF00005 ABC transporter CFM90_10185 PF02653 Branched-chain amino acid transport system / permease component CFM90_10190 PF00356 Bacterial regulatory proteins, lacI family CFM90_10195 PF00294 pfkB family carbohydrate kinase CFM90_10205 PF12344 Ultra-violet resistance protein B CFM90_10205 PF04851 Type III restriction enzyme, res subunit CFM90_10205 PF00271 Helicase conserved C-terminal domain CFM90_10205 PF17757 UvrB interaction domain CFM90_10205 PF02151 UvrB/uvrC motif CFM90_10210 PF00155 Aminotransferase class I and II CFM90_10220 PF00440 Bacterial regulatory proteins, tetR family CFM90_10220 PF17938 Tetracyclin repressor-like, C-terminal domain CFM90_10225 PF04060 Putative Fe-S cluster CFM90_10230 PF10576 Iron-sulfur binding domain of endonuclease III CFM90_10230 PF00730 HhH-GPD superfamily base excision DNA repair protein CFM90_10230 PF00633 Helix-hairpin-helix motif CFM90_10235 PF00881 Nitroreductase family CFM90_10255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFM90_10260 PF00034 Cytochrome c CFM90_10265 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_10265 PF01434 Peptidase family M41 CFM90_10265 PF17862 AAA+ lid domain CFM90_10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_10305 PF00183 Hsp90 protein CFM90_10310 PF00155 Aminotransferase class I and II CFM90_10315 PF01411 tRNA synthetases class II (A) CFM90_10315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFM90_10315 PF02272 DHHA1 domain CFM90_10330 PF00155 Aminotransferase class I and II CFM90_10335 PF00043 Glutathione S-transferase, C-terminal domain CFM90_10335 PF13417 Glutathione S-transferase, N-terminal domain CFM90_10350 PF02652 L-lactate permease CFM90_10365 PF00521 DNA gyrase/topoisomerase IV, subunit A CFM90_10370 PF01464 Transglycosylase SLT domain CFM90_10375 PF00204 DNA gyrase B CFM90_10375 PF00986 DNA gyrase B subunit, carboxyl terminus CFM90_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_10375 PF01751 Toprim domain CFM90_10390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_10420 PF00271 Helicase conserved C-terminal domain CFM90_10420 PF00270 DEAD/DEAH box helicase CFM90_10425 PF03781 Sulfatase-modifying factor enzyme 1 CFM90_10425 PF12867 DinB superfamily CFM90_10430 PF10017 Histidine-specific methyltransferase, SAM-dependent CFM90_10435 PF03741 Integral membrane protein TerC family CFM90_10440 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_10445 PF00303 Thymidylate synthase CFM90_10450 PF00186 Dihydrofolate reductase CFM90_10455 PF01523 Putative modulator of DNA gyrase CFM90_10460 PF04751 Protein of unknown function (DUF615) CFM90_10465 PF00994 Probable molybdopterin binding domain CFM90_10470 PF00929 Exonuclease CFM90_10475 PF01435 Peptidase family M48 CFM90_10480 PF03193 RsgA GTPase CFM90_10490 PF03186 CobD/Cbib protein CFM90_10490 PF17113 Regulatory signalling modulator protein AmpE CFM90_10495 PF00293 NUDIX domain CFM90_10500 PF01245 Ribosomal protein L19 CFM90_10505 PF01746 tRNA (Guanine-1)-methyltransferase CFM90_10510 PF01782 RimM N-terminal domain CFM90_10510 PF05239 PRC-barrel domain CFM90_10515 PF00886 Ribosomal protein S16 CFM90_10520 PF07995 Glucose / Sorbosone dehydrogenase CFM90_10540 PF04055 Radical SAM superfamily CFM90_10545 PF01037 Lrp/AsnC ligand binding domain CFM90_10550 PF01266 FAD dependent oxidoreductase CFM90_10555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_10555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_10555 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_10555 PF12806 Acetyl-CoA dehydrogenase C-terminal like CFM90_10560 PF00766 Electron transfer flavoprotein FAD-binding domain CFM90_10560 PF01012 Electron transfer flavoprotein domain CFM90_10565 PF01012 Electron transfer flavoprotein domain CFM90_10570 PF03180 NLPA lipoprotein CFM90_10575 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_10580 PF00005 ABC transporter CFM90_10580 PF09383 NIL domain CFM90_10585 PF00850 Histone deacetylase domain CFM90_10590 PF13406 Transglycosylase SLT domain CFM90_10595 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_10605 PF01370 NAD dependent epimerase/dehydratase family CFM90_10610 PF00294 pfkB family carbohydrate kinase CFM90_10615 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFM90_10615 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFM90_10615 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFM90_10620 PF18073 Rubredoxin metal binding domain CFM90_10630 PF00216 Bacterial DNA-binding protein CFM90_10635 PF00575 S1 RNA binding domain CFM90_10640 PF02224 Cytidylate kinase CFM90_10645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFM90_10650 PF01842 ACT domain CFM90_10650 PF02153 Prephenate dehydrogenase CFM90_10655 PF00155 Aminotransferase class I and II CFM90_10660 PF01842 ACT domain CFM90_10660 PF00800 Prephenate dehydratase CFM90_10660 PF01817 Chorismate mutase type II CFM90_10665 PF00266 Aminotransferase class-V CFM90_10675 PF00521 DNA gyrase/topoisomerase IV, subunit A CFM90_10675 PF03989 DNA gyrase C-terminal domain, beta-propeller CFM90_10680 PF00691 OmpA family CFM90_10695 PF13419 Haloacid dehalogenase-like hydrolase CFM90_10715 PF00239 Resolvase, N terminal domain CFM90_10715 PF02796 Helix-turn-helix domain of resolvase CFM90_10775 PF04717 Type VI secretion system, phage-baseplate injector CFM90_10780 PF03466 LysR substrate binding domain CFM90_10780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_10785 PF07690 Major Facilitator Superfamily CFM90_10800 PF01381 Helix-turn-helix CFM90_10875 PF00872 Transposase, Mutator family CFM90_10885 PF00145 C-5 cytosine-specific DNA methylase CFM90_10895 PF00816 H-NS histone family CFM90_11015 PF18755 Restriction Enzyme Adenine Methylase Associated CFM90_11015 PF01555 DNA methylase CFM90_11020 PF01555 DNA methylase CFM90_11155 PF02796 Helix-turn-helix domain of resolvase CFM90_11155 PF00239 Resolvase, N terminal domain CFM90_11175 PF13145 PPIC-type PPIASE domain CFM90_11180 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_11180 PF17287 POTRA domain CFM90_11180 PF08479 POTRA domain, ShlB-type CFM90_11185 PF13018 Extended Signal Peptide of Type V secretion system CFM90_11185 PF05594 Haemagluttinin repeat CFM90_11185 PF05860 haemagglutination activity domain CFM90_11185 PF13332 Hemagglutinin repeat CFM90_11260 PF00106 short chain dehydrogenase CFM90_11280 PF00873 AcrB/AcrD/AcrF family CFM90_11290 PF00440 Bacterial regulatory proteins, tetR family CFM90_11295 PF02321 Outer membrane efflux protein CFM90_11300 PF00106 short chain dehydrogenase CFM90_11305 PF07690 Major Facilitator Superfamily CFM90_11315 PF01609 Transposase DDE domain CFM90_11315 PF05598 Transposase domain (DUF772) CFM90_11375 PF01548 Transposase CFM90_11375 PF02371 Transposase IS116/IS110/IS902 family CFM90_11380 PF01527 Transposase CFM90_11465 PF00440 Bacterial regulatory proteins, tetR family CFM90_11470 PF00106 short chain dehydrogenase CFM90_11475 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_11475 PF00107 Zinc-binding dehydrogenase CFM90_11490 PF03421 YopJ Serine/Threonine acetyltransferase CFM90_11505 PF05598 Transposase domain (DUF772) CFM90_11505 PF01609 Transposase DDE domain CFM90_11520 PF02796 Helix-turn-helix domain of resolvase CFM90_11520 PF00239 Resolvase, N terminal domain CFM90_11540 PF17287 POTRA domain CFM90_11540 PF08479 POTRA domain, ShlB-type CFM90_11540 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_11550 PF05860 haemagglutination activity domain CFM90_11550 PF13332 Hemagglutinin repeat CFM90_11550 PF05594 Haemagluttinin repeat CFM90_11550 PF13018 Extended Signal Peptide of Type V secretion system CFM90_11550 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CFM90_11615 PF01850 PIN domain CFM90_11625 PF00816 H-NS histone family CFM90_11750 PF00881 Nitroreductase family CFM90_11765 PF03330 Lytic transglycolase CFM90_11775 PF00043 Glutathione S-transferase, C-terminal domain CFM90_11775 PF02798 Glutathione S-transferase, N-terminal domain CFM90_11790 PF01810 LysE type translocator CFM90_11805 PF01206 Sulfurtransferase TusA CFM90_11810 PF13344 Haloacid dehalogenase-like hydrolase CFM90_11810 PF00293 NUDIX domain CFM90_11815 PF01212 Beta-eliminating lyase CFM90_11820 PF01361 Tautomerase enzyme CFM90_11825 PF00596 Class II Aldolase and Adducin N-terminal domain CFM90_11830 PF06779 Uncharacterised MFS-type transporter YbfB CFM90_11835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_11835 PF03466 LysR substrate binding domain CFM90_11845 PF01145 SPFH domain / Band 7 family CFM90_11855 PF07715 TonB-dependent Receptor Plug Domain CFM90_11855 PF00593 TonB dependent receptor CFM90_11870 PF02272 DHHA1 domain CFM90_11870 PF01411 tRNA synthetases class II (A) CFM90_11870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFM90_11875 PF02515 CoA-transferase family III CFM90_11885 PF07331 Tripartite tricarboxylate transporter TctB family CFM90_11890 PF01970 Tripartite tricarboxylate transporter TctA family CFM90_11900 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CFM90_11900 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFM90_11930 PF07152 YaeQ protein CFM90_11935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFM90_11945 PF04752 ChaC-like protein CFM90_11955 PF00501 AMP-binding enzyme CFM90_11955 PF13193 AMP-binding enzyme C-terminal domain CFM90_11960 PF00085 Thioredoxin CFM90_11970 PF01814 Hemerythrin HHE cation binding domain CFM90_11975 PF00141 Peroxidase CFM90_11980 PF00899 ThiF family CFM90_11985 PF05170 AsmA family CFM90_11990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFM90_11990 PF00034 Cytochrome c CFM90_11995 PF00732 GMC oxidoreductase CFM90_11995 PF05199 GMC oxidoreductase CFM90_12005 PF00933 Glycosyl hydrolase family 3 N terminal domain CFM90_12010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CFM90_12010 PF01243 Pyridoxamine 5'-phosphate oxidase CFM90_12025 PF01625 Peptide methionine sulfoxide reductase CFM90_12030 PF01613 Flavin reductase like domain CFM90_12040 PF01037 Lrp/AsnC ligand binding domain CFM90_12045 PF04199 Putative cyclase CFM90_12050 PF00266 Aminotransferase class-V CFM90_12055 PF03301 Tryptophan 2,3-dioxygenase CFM90_12065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_12065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_12065 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_12070 PF00860 Permease family CFM90_12075 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFM90_12075 PF00578 AhpC/TSA family CFM90_12080 PF05957 Bacterial protein of unknown function (DUF883) CFM90_12100 PF00005 ABC transporter CFM90_12105 PF03649 Uncharacterised protein family (UPF0014) CFM90_12110 PF00293 NUDIX domain CFM90_12115 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CFM90_12130 PF00793 DAHP synthetase I family CFM90_12135 PF04344 Chemotaxis phosphatase, CheZ CFM90_12140 PF00072 Response regulator receiver domain CFM90_12150 PF01609 Transposase DDE domain CFM90_12150 PF13006 Insertion element 4 transposase N-terminal CFM90_12160 PF04143 Sulphur transport CFM90_12165 PF06508 Queuosine biosynthesis protein QueC CFM90_12175 PF00691 OmpA family CFM90_12180 PF07676 WD40-like Beta Propeller Repeat CFM90_12180 PF04052 TolB amino-terminal domain CFM90_12190 PF02472 Biopolymer transport protein ExbD/TolR CFM90_12195 PF01618 MotA/TolQ/ExbB proton channel family CFM90_12200 PF03061 Thioesterase superfamily CFM90_12205 PF00106 short chain dehydrogenase CFM90_12210 PF00464 Serine hydroxymethyltransferase CFM90_12215 PF03477 ATP cone domain CFM90_12235 PF05567 Neisseria PilC beta-propeller domain CFM90_12265 PF05567 Neisseria PilC beta-propeller domain CFM90_12280 PF01872 RibD C-terminal domain CFM90_12280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFM90_12285 PF00677 Lumazine binding domain CFM90_12290 PF00925 GTP cyclohydrolase II CFM90_12290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFM90_12295 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFM90_12300 PF01029 NusB family CFM90_12305 PF00155 Aminotransferase class I and II CFM90_12310 PF01464 Transglycosylase SLT domain CFM90_12310 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CFM90_12315 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CFM90_12345 PF02390 Putative methyltransferase CFM90_12350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFM90_12355 PF02673 Bacitracin resistance protein BacA CFM90_12365 PF03692 Putative zinc- or iron-chelating domain CFM90_12375 PF08361 MAATS-type transcriptional repressor, C-terminal region CFM90_12375 PF00440 Bacterial regulatory proteins, tetR family CFM90_12385 PF01206 Sulfurtransferase TusA CFM90_12385 PF00581 Rhodanese-like domain CFM90_12400 PF00534 Glycosyl transferases group 1 CFM90_12400 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CFM90_12405 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFM90_12410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFM90_12410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFM90_12410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFM90_12410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFM90_12420 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CFM90_12420 PF00953 Glycosyl transferase family 4 CFM90_12445 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CFM90_12450 PF00483 Nucleotidyl transferase CFM90_12455 PF04321 RmlD substrate binding domain CFM90_12460 PF16363 GDP-mannose 4,6 dehydratase CFM90_12465 PF00149 Calcineurin-like phosphoesterase CFM90_12470 PF01553 Acyltransferase CFM90_12475 PF01979 Amidohydrolase family CFM90_12480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFM90_12480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFM90_12485 PF00156 Phosphoribosyl transferase domain CFM90_12490 PF03652 Holliday junction resolvase CFM90_12495 PF02622 Uncharacterized ACR, COG1678 CFM90_12500 PF00849 RNA pseudouridylate synthase CFM90_12500 PF01479 S4 domain CFM90_12510 PF02895 Signal transducing histidine kinase, homodimeric domain CFM90_12510 PF07194 P2 response regulator binding domain CFM90_12510 PF01627 Hpt domain CFM90_12510 PF01584 CheW-like domain CFM90_12510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_12515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_12515 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CFM90_12525 PF00072 Response regulator receiver domain CFM90_12530 PF00072 Response regulator receiver domain CFM90_12535 PF00301 Rubredoxin CFM90_12540 PF00202 Aminotransferase class-III CFM90_12545 PF00701 Dihydrodipicolinate synthetase family CFM90_12555 PF04011 LemA family CFM90_12600 PF04972 BON domain CFM90_12600 PF00263 Bacterial type II and III secretion system protein CFM90_12600 PF13629 Pilus formation protein N terminal region CFM90_12615 PF00437 Type II/IV secretion system protein CFM90_12665 PF05987 Bacterial protein of unknown function (DUF898) CFM90_12670 PF00118 TCP-1/cpn60 chaperonin family CFM90_12675 PF00166 Chaperonin 10 Kd subunit CFM90_12685 PF00012 Hsp70 protein CFM90_12690 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_12690 PF00107 Zinc-binding dehydrogenase CFM90_12695 PF00440 Bacterial regulatory proteins, tetR family CFM90_12695 PF17754 MftR C-terminal domain CFM90_12700 PF00196 Bacterial regulatory proteins, luxR family CFM90_12710 PF00270 DEAD/DEAH box helicase CFM90_12710 PF03880 DbpA RNA binding domain CFM90_12710 PF00271 Helicase conserved C-terminal domain CFM90_12715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_12715 PF03466 LysR substrate binding domain CFM90_12720 PF00248 Aldo/keto reductase family CFM90_12725 PF07690 Major Facilitator Superfamily CFM90_12740 PF12146 Serine aminopeptidase, S33 CFM90_12745 PF04381 Putative exonuclease, RdgC CFM90_12765 PF03466 LysR substrate binding domain CFM90_12765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_12770 PF00892 EamA-like transporter family CFM90_12805 PF13417 Glutathione S-transferase, N-terminal domain CFM90_12810 PF00672 HAMP domain CFM90_12810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_12810 PF02203 Tar ligand binding domain homologue CFM90_12815 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_12815 PF00107 Zinc-binding dehydrogenase CFM90_12820 PF00756 Putative esterase CFM90_12835 PF04403 Paraquat-inducible protein A CFM90_12840 PF02470 MlaD protein CFM90_12850 PF00155 Aminotransferase class I and II CFM90_12850 PF00392 Bacterial regulatory proteins, gntR family CFM90_12885 PF11871 Domain of unknown function (DUF3391) CFM90_12885 PF01966 HD domain CFM90_12900 PF01425 Amidase CFM90_12905 PF00563 EAL domain CFM90_12905 PF00990 Diguanylate cyclase, GGDEF domain CFM90_12905 PF03707 Bacterial signalling protein N terminal repeat CFM90_12920 PF07690 Major Facilitator Superfamily CFM90_12925 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CFM90_12930 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CFM90_12940 PF13419 Haloacid dehalogenase-like hydrolase CFM90_12950 PF03481 Putative GTP-binding controlling metal-binding CFM90_12950 PF01300 Telomere recombination CFM90_12955 PF02222 ATP-grasp domain CFM90_12955 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CFM90_12960 PF00731 AIR carboxylase CFM90_12965 PF01259 SAICAR synthetase CFM90_12970 PF01116 Fructose-bisphosphate aldolase class-II CFM90_12975 PF02887 Pyruvate kinase, alpha/beta domain CFM90_12975 PF00224 Pyruvate kinase, barrel domain CFM90_12980 PF00162 Phosphoglycerate kinase CFM90_12985 PF00892 EamA-like transporter family CFM90_13000 PF01063 Amino-transferase class IV CFM90_13010 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFM90_13020 PF00561 alpha/beta hydrolase fold CFM90_13030 PF13181 Tetratricopeptide repeat CFM90_13030 PF01435 Peptidase family M48 CFM90_13035 PF01967 MoaC family CFM90_13045 PF07963 Prokaryotic N-terminal methylation motif CFM90_13045 PF00114 Pilin (bacterial filament) CFM90_13055 PF03741 Integral membrane protein TerC family CFM90_13060 PF02629 CoA binding domain CFM90_13060 PF00549 CoA-ligase CFM90_13065 PF08442 ATP-grasp domain CFM90_13065 PF00549 CoA-ligase CFM90_13075 PF02631 RecX family CFM90_13080 PF00154 recA bacterial DNA recombination protein CFM90_13085 PF00486 Transcriptional regulatory protein, C terminal CFM90_13085 PF00072 Response regulator receiver domain CFM90_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_13090 PF08521 Two-component sensor kinase N-terminal CFM90_13090 PF00512 His Kinase A (phospho-acceptor) domain CFM90_13100 PF00083 Sugar (and other) transporter CFM90_13100 PF08946 Osmosensory transporter coiled coil CFM90_13115 PF01494 FAD binding domain CFM90_13125 PF00486 Transcriptional regulatory protein, C terminal CFM90_13125 PF00072 Response regulator receiver domain CFM90_13130 PF03466 LysR substrate binding domain CFM90_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_13135 PF05726 Pirin C-terminal cupin domain CFM90_13135 PF02678 Pirin CFM90_13140 PF01636 Phosphotransferase enzyme family CFM90_13145 PF00271 Helicase conserved C-terminal domain CFM90_13145 PF00270 DEAD/DEAH box helicase CFM90_13150 PF05598 Transposase domain (DUF772) CFM90_13150 PF01609 Transposase DDE domain CFM90_13155 PF00440 Bacterial regulatory proteins, tetR family CFM90_13160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_13160 PF09317 Domain of unknown function (DUF1974) CFM90_13160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_13175 PF13193 AMP-binding enzyme C-terminal domain CFM90_13175 PF00501 AMP-binding enzyme CFM90_13200 PF04055 Radical SAM superfamily CFM90_13200 PF01938 TRAM domain CFM90_13200 PF00919 Uncharacterized protein family UPF0004 CFM90_13205 PF02562 PhoH-like protein CFM90_13210 PF02130 Uncharacterized protein family UPF0054 CFM90_13215 PF00571 CBS domain CFM90_13215 PF03471 Transporter associated domain CFM90_13220 PF00795 Carbon-nitrogen hydrolase CFM90_13225 PF02091 Glycyl-tRNA synthetase alpha subunit CFM90_13235 PF02092 Glycyl-tRNA synthetase beta subunit CFM90_13235 PF05746 DALR anticodon binding domain CFM90_13245 PF01553 Acyltransferase CFM90_13255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFM90_13260 PF00892 EamA-like transporter family CFM90_13265 PF00398 Ribosomal RNA adenine dimethylase CFM90_13270 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CFM90_13275 PF09312 SurA N-terminal domain CFM90_13280 PF04453 LPS transport system D CFM90_13285 PF01636 Phosphotransferase enzyme family CFM90_13300 PF00483 Nucleotidyl transferase CFM90_13305 PF00563 EAL domain CFM90_13305 PF00990 Diguanylate cyclase, GGDEF domain CFM90_13305 PF03707 Bacterial signalling protein N terminal repeat CFM90_13310 PF05195 Aminopeptidase P, N-terminal domain CFM90_13310 PF00557 Metallopeptidase family M24 CFM90_13315 PF01494 FAD binding domain CFM90_13320 PF01266 FAD dependent oxidoreductase CFM90_13325 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CFM90_13335 PF01207 Dihydrouridine synthase (Dus) CFM90_13340 PF02954 Bacterial regulatory protein, Fis family CFM90_13345 PF01808 AICARFT/IMPCHase bienzyme CFM90_13345 PF02142 MGS-like domain CFM90_13355 PF02075 Crossover junction endodeoxyribonuclease RuvC CFM90_13365 PF01330 RuvA N terminal domain CFM90_13365 PF07499 RuvA, C-terminal domain CFM90_13370 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFM90_13370 PF05491 RuvB C-terminal winged helix domain CFM90_13370 PF17864 RuvB AAA lid domain CFM90_13375 PF00300 Histidine phosphatase superfamily (branch 1) CFM90_13385 PF02580 D-Tyr-tRNA(Tyr) deacylase CFM90_13390 PF01479 S4 domain CFM90_13390 PF00579 tRNA synthetases class I (W and Y) CFM90_13395 PF03702 Anhydro-N-acetylmuramic acid kinase CFM90_13400 PF01521 Iron-sulphur cluster biosynthesis CFM90_13415 PF00380 Ribosomal protein S9/S16 CFM90_13420 PF00572 Ribosomal protein L13 CFM90_13440 PF01979 Amidohydrolase family CFM90_13445 PF13660 Domain of unknown function (DUF4147) CFM90_13445 PF05161 MOFRL family CFM90_13450 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_13455 PF13230 Glutamine amidotransferases class-II CFM90_13460 PF00005 ABC transporter CFM90_13465 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_13470 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_13475 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_13480 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFM90_13480 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFM90_13490 PF00005 ABC transporter CFM90_13490 PF00664 ABC transporter transmembrane region CFM90_13495 PF03061 Thioesterase superfamily CFM90_13500 PF00378 Enoyl-CoA hydratase/isomerase CFM90_13505 PF00108 Thiolase, N-terminal domain CFM90_13505 PF02803 Thiolase, C-terminal domain CFM90_13510 PF00378 Enoyl-CoA hydratase/isomerase CFM90_13510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFM90_13510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFM90_13515 PF12806 Acetyl-CoA dehydrogenase C-terminal like CFM90_13515 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_13515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_13515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_13525 PF01144 Coenzyme A transferase CFM90_13530 PF13091 PLD-like domain CFM90_13535 PF03372 Endonuclease/Exonuclease/phosphatase family CFM90_13540 PF00293 NUDIX domain CFM90_13550 PF01336 OB-fold nucleic acid binding domain CFM90_13550 PF00152 tRNA synthetases class II (D, K and N) CFM90_13550 PF02938 GAD domain CFM90_13570 PF05724 Thiopurine S-methyltransferase (TPMT) CFM90_13575 PF03109 ABC1 family CFM90_13590 PF01209 ubiE/COQ5 methyltransferase family CFM90_13600 PF00005 ABC transporter CFM90_13600 PF06472 ABC transporter transmembrane region 2 CFM90_13615 PF09335 SNARE associated Golgi protein CFM90_13620 PF07670 Nucleoside recognition CFM90_13630 PF07885 Ion channel CFM90_13630 PF17655 Inward rectifier potassium channel C-terminal domain CFM90_13635 PF00585 C-terminal regulatory domain of Threonine dehydratase CFM90_13635 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_13640 PF14489 QueF-like protein CFM90_13640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CFM90_13670 PF13193 AMP-binding enzyme C-terminal domain CFM90_13670 PF00501 AMP-binding enzyme CFM90_13675 PF01202 Shikimate kinase CFM90_13685 PF07859 alpha/beta hydrolase fold CFM90_13690 PF04143 Sulphur transport CFM90_13720 PF07977 FabA-like domain CFM90_13745 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_13745 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_13765 PF13276 HTH-like domain CFM90_13770 PF00436 Single-strand binding protein family CFM90_13775 PF07690 Major Facilitator Superfamily CFM90_13780 PF17755 UvrA DNA-binding domain CFM90_13780 PF17760 UvrA interaction domain CFM90_13790 PF02690 Na+/Pi-cotransporter CFM90_13795 PF01810 LysE type translocator CFM90_13800 PF00156 Phosphoribosyl transferase domain CFM90_13805 PF01965 DJ-1/PfpI family CFM90_13815 PF00999 Sodium/hydrogen exchanger family CFM90_13815 PF02080 TrkA-C domain CFM90_13815 PF02254 TrkA-N domain CFM90_13825 PF00571 CBS domain CFM90_13825 PF01380 SIS domain CFM90_13845 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_13845 PF00005 ABC transporter CFM90_13850 PF04552 Sigma-54, DNA binding domain CFM90_13850 PF04963 Sigma-54 factor, core binding domain CFM90_13850 PF00309 Sigma-54 factor, Activator interacting domain (AID) CFM90_13855 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CFM90_13860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFM90_13865 PF02603 HPr Serine kinase N terminus CFM90_13865 PF07475 HPr Serine kinase C-terminal domain CFM90_13875 PF03668 P-loop ATPase protein family CFM90_13885 PF00730 HhH-GPD superfamily base excision DNA repair protein CFM90_13885 PF14815 NUDIX domain CFM90_13885 PF00633 Helix-hairpin-helix motif CFM90_13885 PF10576 Iron-sulfur binding domain of endonuclease III CFM90_13895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CFM90_13895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CFM90_13895 PF06827 Zinc finger found in FPG and IleRS CFM90_13905 PF03550 Outer membrane lipoprotein LolB CFM90_13910 PF00288 GHMP kinases N terminal domain CFM90_13910 PF08544 GHMP kinases C terminal CFM90_13920 PF14572 Phosphoribosyl synthetase-associated domain CFM90_13920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CFM90_13925 PF01386 Ribosomal L25p family CFM90_13925 PF14693 Ribosomal protein TL5, C-terminal domain CFM90_13930 PF01195 Peptidyl-tRNA hydrolase CFM90_13940 PF00037 4Fe-4S binding domain CFM90_13945 PF01467 Cytidylyltransferase-like CFM90_13955 PF05193 Peptidase M16 inactive domain CFM90_13960 PF00675 Insulinase (Peptidase family M16) CFM90_13960 PF05193 Peptidase M16 inactive domain CFM90_13965 PF02881 SRP54-type protein, helical bundle domain CFM90_13965 PF00448 SRP54-type protein, GTPase domain CFM90_13975 PF02798 Glutathione S-transferase, N-terminal domain CFM90_13975 PF14497 Glutathione S-transferase, C-terminal domain CFM90_13980 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFM90_13985 PF08376 Nitrate and nitrite sensing CFM90_13985 PF03861 ANTAR domain CFM90_14000 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_14005 PF00005 ABC transporter CFM90_14010 PF02885 Glycosyl transferase family, helical bundle domain CFM90_14015 PF05726 Pirin C-terminal cupin domain CFM90_14015 PF02678 Pirin CFM90_14030 PF04545 Sigma-70, region 4 CFM90_14030 PF04542 Sigma-70 region 2 CFM90_14030 PF00140 Sigma-70 factor, region 1.2 CFM90_14035 PF01609 Transposase DDE domain CFM90_14035 PF13006 Insertion element 4 transposase N-terminal CFM90_14040 PF02630 SCO1/SenC CFM90_14045 PF01040 UbiA prenyltransferase family CFM90_14050 PF02628 Cytochrome oxidase assembly protein CFM90_14070 PF00510 Cytochrome c oxidase subunit III CFM90_14080 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CFM90_14085 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_14090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CFM90_14090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFM90_14100 PF08241 Methyltransferase domain CFM90_14105 PF00156 Phosphoribosyl transferase domain CFM90_14110 PF00588 SpoU rRNA Methylase family CFM90_14115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CFM90_14115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CFM90_14120 PF02556 Preprotein translocase subunit SecB CFM90_14125 PF00462 Glutaredoxin CFM90_14130 PF00581 Rhodanese-like domain CFM90_14135 PF00300 Histidine phosphatase superfamily (branch 1) CFM90_14140 PF03572 Peptidase family S41 CFM90_14140 PF13180 PDZ domain CFM90_14145 PF00899 ThiF family CFM90_14150 PF00210 Ferritin-like domain CFM90_14160 PF05524 PEP-utilising enzyme, N-terminal CFM90_14160 PF00391 PEP-utilising enzyme, mobile domain CFM90_14160 PF02896 PEP-utilising enzyme, TIM barrel domain CFM90_14165 PF00381 PTS HPr component phosphorylation site CFM90_14175 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CFM90_14175 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CFM90_14185 PF01609 Transposase DDE domain CFM90_14185 PF13006 Insertion element 4 transposase N-terminal CFM90_14190 PF00909 Ammonium Transporter Family CFM90_14195 PF00543 Nitrogen regulatory protein P-II CFM90_14205 PF04380 Membrane fusogenic activity CFM90_14215 PF01078 Magnesium chelatase, subunit ChlI CFM90_14215 PF13335 Magnesium chelatase, subunit ChlI C-terminal CFM90_14220 PF00264 Common central domain of tyrosinase CFM90_14235 PF01661 Macro domain CFM90_14240 PF00578 AhpC/TSA family CFM90_14245 PF00072 Response regulator receiver domain CFM90_14245 PF00158 Sigma-54 interaction domain CFM90_14245 PF02954 Bacterial regulatory protein, Fis family CFM90_14250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_14250 PF00512 His Kinase A (phospho-acceptor) domain CFM90_14255 PF00375 Sodium:dicarboxylate symporter family CFM90_14270 PF07943 Penicillin-binding protein 5, C-terminal domain CFM90_14270 PF00768 D-alanyl-D-alanine carboxypeptidase CFM90_14275 PF04359 Protein of unknown function (DUF493) CFM90_14280 PF03466 LysR substrate binding domain CFM90_14280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_14290 PF03099 Biotin/lipoate A/B protein ligase family CFM90_14295 PF04055 Radical SAM superfamily CFM90_14295 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CFM90_14310 PF04185 Phosphoesterase family CFM90_14310 PF05506 Domain of unknown function (DUF756) CFM90_14335 PF09383 NIL domain CFM90_14335 PF00005 ABC transporter CFM90_14340 PF02405 Permease MlaE CFM90_14345 PF08279 HTH domain CFM90_14345 PF03099 Biotin/lipoate A/B protein ligase family CFM90_14345 PF02237 Biotin protein ligase C terminal domain CFM90_14350 PF03309 Type III pantothenate kinase CFM90_14360 PF01467 Cytidylyltransferase-like CFM90_14370 PF00255 Glutathione peroxidase CFM90_14385 PF00378 Enoyl-CoA hydratase/isomerase CFM90_14415 PF00561 alpha/beta hydrolase fold CFM90_14420 PF12091 Protein of unknown function (DUF3567) CFM90_14430 PF02965 Vitamin B12 dependent methionine synthase, activation domain CFM90_14430 PF02607 B12 binding domain CFM90_14430 PF02310 B12 binding domain CFM90_14430 PF00809 Pterin binding enzyme CFM90_14430 PF02574 Homocysteine S-methyltransferase CFM90_14435 PF02310 B12 binding domain CFM90_14435 PF02607 B12 binding domain CFM90_14435 PF02965 Vitamin B12 dependent methionine synthase, activation domain CFM90_14435 PF00809 Pterin binding enzyme CFM90_14435 PF02574 Homocysteine S-methyltransferase CFM90_14445 PF00196 Bacterial regulatory proteins, luxR family CFM90_14445 PF00072 Response regulator receiver domain CFM90_14450 PF00072 Response regulator receiver domain CFM90_14450 PF04397 LytTr DNA-binding domain CFM90_14460 PF13006 Insertion element 4 transposase N-terminal CFM90_14460 PF01609 Transposase DDE domain CFM90_14465 PF07730 Histidine kinase CFM90_14465 PF17200 Single Cache domain 2 CFM90_14475 PF00750 tRNA synthetases class I (R) CFM90_14475 PF03485 Arginyl tRNA synthetase N terminal domain CFM90_14475 PF05746 DALR anticodon binding domain CFM90_14485 PF13462 Thioredoxin CFM90_14490 PF00106 short chain dehydrogenase CFM90_14500 PF01548 Transposase CFM90_14500 PF02371 Transposase IS116/IS110/IS902 family CFM90_14520 PF05598 Transposase domain (DUF772) CFM90_14520 PF01609 Transposase DDE domain CFM90_14550 PF03992 Antibiotic biosynthesis monooxygenase CFM90_14560 PF13411 MerR HTH family regulatory protein CFM90_14565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_14565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_14565 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_14570 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CFM90_14575 PF00484 Carbonic anhydrase CFM90_14580 PF00108 Thiolase, N-terminal domain CFM90_14580 PF02803 Thiolase, C-terminal domain CFM90_14590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_14590 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_14590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_14605 PF13419 Haloacid dehalogenase-like hydrolase CFM90_14615 PF01039 Carboxyl transferase domain CFM90_14625 PF00378 Enoyl-CoA hydratase/isomerase CFM90_14630 PF04055 Radical SAM superfamily CFM90_14630 PF06968 Biotin and Thiamin Synthesis associated domain CFM90_14640 PF00364 Biotin-requiring enzyme CFM90_14640 PF00289 Biotin carboxylase, N-terminal domain CFM90_14640 PF02785 Biotin carboxylase C-terminal domain CFM90_14640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFM90_14655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_14660 PF00682 HMGL-like CFM90_14680 PF00561 alpha/beta hydrolase fold CFM90_14695 PF02567 Phenazine biosynthesis-like protein CFM90_14700 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CFM90_14700 PF06594 Haemolysin-type calcium binding protein related domain CFM90_14705 PF13737 Transposase DDE domain CFM90_14715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFM90_14715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFM90_14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_14720 PF03466 LysR substrate binding domain CFM90_14740 PF07969 Amidohydrolase family CFM90_14750 PF02310 B12 binding domain CFM90_14750 PF01642 Methylmalonyl-CoA mutase CFM90_14785 PF06772 Bacterial low temperature requirement A protein (LtrA) CFM90_14790 PF00155 Aminotransferase class I and II CFM90_14800 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CFM90_14800 PF01137 RNA 3'-terminal phosphate cyclase CFM90_14805 PF10127 RNA repair pathway DNA polymerase beta family CFM90_14810 PF01139 tRNA-splicing ligase RtcB CFM90_14820 PF00158 Sigma-54 interaction domain CFM90_14820 PF06956 Regulator of RNA terminal phosphate cyclase CFM90_14835 PF00708 Acylphosphatase CFM90_14855 PF07690 Major Facilitator Superfamily CFM90_14865 PF03466 LysR substrate binding domain CFM90_14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_14870 PF00958 GMP synthase C terminal domain CFM90_14870 PF00117 Glutamine amidotransferase class-I CFM90_14870 PF02540 NAD synthase CFM90_14885 PF01638 HxlR-like helix-turn-helix CFM90_14905 PF07690 Major Facilitator Superfamily CFM90_14910 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CFM90_14915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_14915 PF03466 LysR substrate binding domain CFM90_14925 PF01609 Transposase DDE domain CFM90_14925 PF05598 Transposase domain (DUF772) CFM90_14945 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_14970 PF01695 IstB-like ATP binding protein CFM90_14975 PF00665 Integrase core domain CFM90_15005 PF01609 Transposase DDE domain CFM90_15005 PF05598 Transposase domain (DUF772) CFM90_15050 PF00665 Integrase core domain CFM90_15055 PF01695 IstB-like ATP binding protein CFM90_15095 PF01380 SIS domain CFM90_15100 PF14602 Hexapeptide repeat of succinyl-transferase CFM90_15100 PF12804 MobA-like NTP transferase domain CFM90_15100 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_15110 PF01171 PP-loop family CFM90_15115 PF02558 Ketopantoate reductase PanE/ApbA CFM90_15115 PF08546 Ketopantoate reductase PanE/ApbA C terminal CFM90_15120 PF01040 UbiA prenyltransferase family CFM90_15125 PF01565 FAD binding domain CFM90_15125 PF04030 D-arabinono-1,4-lactone oxidase CFM90_15130 PF00106 short chain dehydrogenase CFM90_15140 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CFM90_15145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_15145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFM90_15155 PF02321 Outer membrane efflux protein CFM90_15165 PF00005 ABC transporter CFM90_15180 PF00171 Aldehyde dehydrogenase family CFM90_15185 PF03466 LysR substrate binding domain CFM90_15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_15190 PF00202 Aminotransferase class-III CFM90_15195 PF00491 Arginase family CFM90_15205 PF00106 short chain dehydrogenase CFM90_15215 PF07690 Major Facilitator Superfamily CFM90_15230 PF00892 EamA-like transporter family CFM90_15235 PF00881 Nitroreductase family CFM90_15255 PF02698 DUF218 domain CFM90_15265 PF03466 LysR substrate binding domain CFM90_15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_15275 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFM90_15280 PF05360 yiaA/B two helix domain CFM90_15285 PF03372 Endonuclease/Exonuclease/phosphatase family CFM90_15290 PF00156 Phosphoribosyl transferase domain CFM90_15300 PF01548 Transposase CFM90_15300 PF02371 Transposase IS116/IS110/IS902 family CFM90_15305 PF03976 Polyphosphate kinase 2 (PPK2) CFM90_15310 PF01678 Diaminopimelate epimerase CFM90_15315 PF03279 Bacterial lipid A biosynthesis acyltransferase CFM90_15325 PF02773 S-adenosylmethionine synthetase, C-terminal domain CFM90_15325 PF02772 S-adenosylmethionine synthetase, central domain CFM90_15325 PF00438 S-adenosylmethionine synthetase, N-terminal domain CFM90_15355 PF00571 CBS domain CFM90_15365 PF01037 Lrp/AsnC ligand binding domain CFM90_15385 PF01548 Transposase CFM90_15385 PF02371 Transposase IS116/IS110/IS902 family CFM90_15400 PF00732 GMC oxidoreductase CFM90_15400 PF05199 GMC oxidoreductase CFM90_15405 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_15410 PF18158 Adaptive response protein AidB N-terminal domain CFM90_15410 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_15410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_15445 PF03060 Nitronate monooxygenase CFM90_15450 PF01964 Radical SAM ThiC family CFM90_15450 PF13667 ThiC-associated domain CFM90_15455 PF01266 FAD dependent oxidoreductase CFM90_15465 PF05690 Thiazole biosynthesis protein ThiG CFM90_15470 PF02581 Thiamine monophosphate synthase CFM90_15475 PF06983 3-demethylubiquinone-9 3-methyltransferase CFM90_15505 PF08543 Phosphomethylpyrimidine kinase CFM90_15515 PF00245 Alkaline phosphatase CFM90_15520 PF00245 Alkaline phosphatase CFM90_15525 PF05221 S-adenosyl-L-homocysteine hydrolase CFM90_15525 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CFM90_15530 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CFM90_15535 PF02219 Methylenetetrahydrofolate reductase CFM90_15545 PF01812 5-formyltetrahydrofolate cyclo-ligase family CFM90_15550 PF01464 Transglycosylase SLT domain CFM90_15550 PF14718 Soluble lytic murein transglycosylase L domain CFM90_15560 PF00043 Glutathione S-transferase, C-terminal domain CFM90_15560 PF13417 Glutathione S-transferase, N-terminal domain CFM90_15565 PF12627 Probable RNA and SrmB- binding site of polymerase A CFM90_15565 PF01743 Poly A polymerase head domain CFM90_15565 PF01966 HD domain CFM90_15570 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_15575 PF05853 beta-keto acid cleavage enzyme CFM90_15580 PF00202 Aminotransferase class-III CFM90_15605 PF00158 Sigma-54 interaction domain CFM90_15605 PF02954 Bacterial regulatory protein, Fis family CFM90_15605 PF00072 Response regulator receiver domain CFM90_15610 PF00512 His Kinase A (phospho-acceptor) domain CFM90_15610 PF00672 HAMP domain CFM90_15610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_15610 PF00989 PAS fold CFM90_15620 PF01029 NusB family CFM90_15620 PF01189 16S rRNA methyltransferase RsmB/F CFM90_15625 PF01435 Peptidase family M48 CFM90_15630 PF01810 LysE type translocator CFM90_15635 PF00551 Formyl transferase CFM90_15635 PF02911 Formyl transferase, C-terminal domain CFM90_15645 PF01327 Polypeptide deformylase CFM90_15650 PF01476 LysM domain CFM90_15655 PF17782 DprA winged helix domain CFM90_15655 PF02481 DNA recombination-mediator protein A CFM90_15665 PF01751 Toprim domain CFM90_15665 PF01131 DNA topoisomerase CFM90_15670 PF03466 LysR substrate binding domain CFM90_15670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_15675 PF00501 AMP-binding enzyme CFM90_15675 PF13193 AMP-binding enzyme C-terminal domain CFM90_15680 PF01098 Cell cycle protein CFM90_15685 PF03717 Penicillin-binding Protein dimerisation domain CFM90_15685 PF00905 Penicillin binding protein transpeptidase domain CFM90_15705 PF02686 Glu-tRNAGln amidotransferase C subunit CFM90_15710 PF01425 Amidase CFM90_15725 PF02934 GatB/GatE catalytic domain CFM90_15725 PF02637 GatB domain CFM90_15735 PF02899 Phage integrase, N-terminal SAM-like domain CFM90_15735 PF00589 Phage integrase family CFM90_15740 PF10672 S-adenosylmethionine-dependent methyltransferase CFM90_15740 PF17785 PUA-like domain CFM90_15745 PF08031 Berberine and berberine like CFM90_15745 PF01565 FAD binding domain CFM90_15760 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFM90_15760 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFM90_15765 PF01258 Prokaryotic dksA/traR C4-type zinc finger CFM90_15770 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFM90_15770 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFM90_15775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFM90_15780 PF00227 Proteasome subunit CFM90_15785 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_15785 PF10431 C-terminal, D2-small domain, of ClpB protein CFM90_15785 PF07724 AAA domain (Cdc48 subfamily) CFM90_15795 PF00072 Response regulator receiver domain CFM90_15800 PF00512 His Kinase A (phospho-acceptor) domain CFM90_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_15825 PF04542 Sigma-70 region 2 CFM90_15825 PF08281 Sigma-70, region 4 CFM90_15830 PF00696 Amino acid kinase family CFM90_15840 PF00440 Bacterial regulatory proteins, tetR family CFM90_15850 PF00672 HAMP domain CFM90_15850 PF00512 His Kinase A (phospho-acceptor) domain CFM90_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_15855 PF00072 Response regulator receiver domain CFM90_15855 PF00486 Transcriptional regulatory protein, C terminal CFM90_15860 PF00392 Bacterial regulatory proteins, gntR family CFM90_15860 PF00155 Aminotransferase class I and II CFM90_15865 PF00202 Aminotransferase class-III CFM90_15870 PF00171 Aldehyde dehydrogenase family CFM90_15875 PF00561 alpha/beta hydrolase fold CFM90_15885 PF01609 Transposase DDE domain CFM90_15885 PF13006 Insertion element 4 transposase N-terminal CFM90_15900 PF04328 Selenoprotein, putative CFM90_15905 PF02554 Carbon starvation protein CstA CFM90_15905 PF13722 5TM C-terminal transporter carbon starvation CstA CFM90_15910 PF07730 Histidine kinase CFM90_15910 PF17200 Single Cache domain 2 CFM90_15915 PF00072 Response regulator receiver domain CFM90_15915 PF00196 Bacterial regulatory proteins, luxR family CFM90_15920 PF01261 Xylose isomerase-like TIM barrel CFM90_15930 PF00486 Transcriptional regulatory protein, C terminal CFM90_15930 PF00072 Response regulator receiver domain CFM90_15935 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CFM90_15935 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CFM90_15945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFM90_15945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_15950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CFM90_15955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFM90_15955 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_15965 PF08361 MAATS-type transcriptional repressor, C-terminal region CFM90_15965 PF00440 Bacterial regulatory proteins, tetR family CFM90_15970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_15970 PF00529 HlyD membrane-fusion protein of T1SS CFM90_15980 PF02321 Outer membrane efflux protein CFM90_15985 PF01165 Ribosomal protein S21 CFM90_16000 PF01926 50S ribosome-binding GTPase CFM90_16000 PF10396 GTP-binding protein TrmE N-terminus CFM90_16000 PF12631 MnmE helical domain CFM90_16005 PF02096 60Kd inner membrane protein CFM90_16005 PF14849 YidC periplasmic domain CFM90_16010 PF01809 Putative membrane protein insertion efficiency factor CFM90_16015 PF00825 Ribonuclease P CFM90_16020 PF00468 Ribosomal protein L34 CFM90_16025 PF08299 Bacterial dnaA protein helix-turn-helix CFM90_16025 PF00308 Bacterial dnaA protein CFM90_16025 PF11638 DnaA N-terminal domain CFM90_16030 PF00712 DNA polymerase III beta subunit, N-terminal domain CFM90_16030 PF02767 DNA polymerase III beta subunit, central domain CFM90_16030 PF02768 DNA polymerase III beta subunit, C-terminal domain CFM90_16035 PF01751 Toprim domain CFM90_16035 PF00204 DNA gyrase B CFM90_16035 PF18053 DNA gyrase B subunit insert domain CFM90_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_16035 PF00986 DNA gyrase B subunit, carboxyl terminus CFM90_16045 PF04545 Sigma-70, region 4 CFM90_16045 PF04539 Sigma-70 region 3 CFM90_16045 PF04542 Sigma-70 region 2 CFM90_16045 PF00140 Sigma-70 factor, region 1.2 CFM90_16050 PF08676 MutL C terminal dimerisation domain CFM90_16050 PF01119 DNA mismatch repair protein, C-terminal domain CFM90_16070 PF03852 DNA mismatch endonuclease Vsr CFM90_16075 PF00145 C-5 cytosine-specific DNA methylase CFM90_16105 PF01695 IstB-like ATP binding protein CFM90_16110 PF00665 Integrase core domain CFM90_16120 PF00899 ThiF family CFM90_16145 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_16145 PF05362 Lon protease (S16) C-terminal proteolytic domain CFM90_16195 PF02195 ParB-like nuclease domain CFM90_16230 PF01062 Bestrophin, RFP-TM, chloride channel CFM90_16240 PF00672 HAMP domain CFM90_16240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_16240 PF02203 Tar ligand binding domain homologue CFM90_16250 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_16260 PF00005 ABC transporter CFM90_16265 PF01266 FAD dependent oxidoreductase CFM90_16280 PF00486 Transcriptional regulatory protein, C terminal CFM90_16280 PF00072 Response regulator receiver domain CFM90_16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_16285 PF08521 Two-component sensor kinase N-terminal CFM90_16285 PF00512 His Kinase A (phospho-acceptor) domain CFM90_16300 PF07690 Major Facilitator Superfamily CFM90_16310 PF00042 Globin CFM90_16310 PF00970 Oxidoreductase FAD-binding domain CFM90_16310 PF00175 Oxidoreductase NAD-binding domain CFM90_16315 PF02082 Transcriptional regulator CFM90_16320 PF02384 N-6 DNA Methylase CFM90_16320 PF12161 HsdM N-terminal domain CFM90_16335 PF00512 His Kinase A (phospho-acceptor) domain CFM90_16335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_16340 PF00486 Transcriptional regulatory protein, C terminal CFM90_16340 PF00072 Response regulator receiver domain CFM90_16365 PF00360 Phytochrome region CFM90_16365 PF01590 GAF domain CFM90_16365 PF00563 EAL domain CFM90_16365 PF00990 Diguanylate cyclase, GGDEF domain CFM90_16370 PF03180 NLPA lipoprotein CFM90_16375 PF13493 Domain of unknown function (DUF4118) CFM90_16375 PF13492 GAF domain CFM90_16375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_16375 PF00512 His Kinase A (phospho-acceptor) domain CFM90_16375 PF02702 Osmosensitive K+ channel His kinase sensor domain CFM90_16380 PF02669 K+-transporting ATPase, c chain CFM90_16390 PF03814 Potassium-transporting ATPase A subunit CFM90_16425 PF01048 Phosphorylase superfamily CFM90_16435 PF00005 ABC transporter CFM90_16445 PF00708 Acylphosphatase CFM90_16455 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CFM90_16460 PF02515 CoA-transferase family III CFM90_16475 PF03776 Septum formation topological specificity factor MinE CFM90_16480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CFM90_16485 PF03775 Septum formation inhibitor MinC, C-terminal domain CFM90_16485 PF05209 Septum formation inhibitor MinC, N-terminal domain CFM90_16490 PF02872 5'-nucleotidase, C-terminal domain CFM90_16490 PF00149 Calcineurin-like phosphoesterase CFM90_16500 PF08546 Ketopantoate reductase PanE/ApbA C terminal CFM90_16500 PF02558 Ketopantoate reductase PanE/ApbA CFM90_16510 PF00216 Bacterial DNA-binding protein CFM90_16525 PF01329 Pterin 4 alpha carbinolamine dehydratase CFM90_16530 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CFM90_16535 PF01037 Lrp/AsnC ligand binding domain CFM90_16540 PF07947 YhhN family CFM90_16545 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFM90_16550 PF03922 OmpW family CFM90_16560 PF00403 Heavy-metal-associated domain CFM90_16565 PF00376 MerR family regulatory protein CFM90_16565 PF09278 MerR, DNA binding CFM90_16570 PF12147 Putative methyltransferase CFM90_16570 PF12146 Serine aminopeptidase, S33 CFM90_16575 PF05199 GMC oxidoreductase CFM90_16575 PF00732 GMC oxidoreductase CFM90_16580 PF00005 ABC transporter CFM90_16580 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_16585 PF00005 ABC transporter CFM90_16595 PF02653 Branched-chain amino acid transport system / permease component CFM90_16615 PF01925 Sulfite exporter TauE/SafE CFM90_16630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_16630 PF03466 LysR substrate binding domain CFM90_16635 PF12843 Putative quorum-sensing-regulated virulence factor CFM90_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_16640 PF03466 LysR substrate binding domain CFM90_16660 PF13932 GidA associated domain CFM90_16660 PF01134 Glucose inhibited division protein A CFM90_16665 PF02527 rRNA small subunit methyltransferase G CFM90_16670 PF13614 AAA domain CFM90_16675 PF17762 HTH domain found in ParB protein CFM90_16675 PF02195 ParB-like nuclease domain CFM90_16685 PF00119 ATP synthase A chain CFM90_16690 PF00137 ATP synthase subunit C CFM90_16695 PF00430 ATP synthase B/B' CF(0) CFM90_16700 PF00213 ATP synthase delta (OSCP) subunit CFM90_16705 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFM90_16705 PF00306 ATP synthase alpha/beta chain, C terminal domain CFM90_16705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFM90_16710 PF00231 ATP synthase CFM90_16715 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFM90_16715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFM90_16720 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CFM90_16720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFM90_16735 PF13380 CoA binding domain CFM90_16740 PF07859 alpha/beta hydrolase fold CFM90_16750 PF12849 PBP superfamily domain CFM90_16755 PF02798 Glutathione S-transferase, N-terminal domain CFM90_16755 PF00043 Glutathione S-transferase, C-terminal domain CFM90_16765 PF02743 Cache domain CFM90_16765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_16765 PF00672 HAMP domain CFM90_16785 PF01208 Uroporphyrinogen decarboxylase (URO-D) CFM90_16790 PF00270 DEAD/DEAH box helicase CFM90_16790 PF18074 Primosomal protein N C-terminal domain CFM90_16790 PF00271 Helicase conserved C-terminal domain CFM90_16790 PF17764 3′ DNA-binding domain (3′BD) CFM90_16790 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CFM90_16795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CFM90_16795 PF14850 DNA-binding domain of Proline dehydrogenase CFM90_16795 PF00171 Aldehyde dehydrogenase family CFM90_16795 PF01619 Proline dehydrogenase CFM90_16800 PF13458 Periplasmic binding protein CFM90_16810 PF04107 Glutamate-cysteine ligase family 2(GCS2) CFM90_16815 PF03169 OPT oligopeptide transporter protein CFM90_16820 PF03313 Serine dehydratase alpha chain CFM90_16820 PF03315 Serine dehydratase beta chain CFM90_16825 PF02347 Glycine cleavage system P-protein CFM90_16830 PF01597 Glycine cleavage H-protein CFM90_16835 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFM90_16835 PF01571 Aminomethyltransferase folate-binding domain CFM90_16855 PF13361 UvrD-like helicase C-terminal domain CFM90_16855 PF00580 UvrD/REP helicase N-terminal domain CFM90_16875 PF03472 Autoinducer binding domain CFM90_16875 PF00196 Bacterial regulatory proteins, luxR family CFM90_16880 PF00765 Autoinducer synthase CFM90_16890 PF06969 HemN C-terminal domain CFM90_16890 PF04055 Radical SAM superfamily CFM90_16895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFM90_16895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFM90_16905 PF01261 Xylose isomerase-like TIM barrel CFM90_16910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFM90_16910 PF00205 Thiamine pyrophosphate enzyme, central domain CFM90_16910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFM90_16915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_16915 PF03466 LysR substrate binding domain CFM90_16930 PF09186 Domain of unknown function (DUF1949) CFM90_16930 PF01205 Uncharacterized protein family UPF0029 CFM90_16940 PF00375 Sodium:dicarboxylate symporter family CFM90_16945 PF03561 Allantoicase repeat CFM90_16950 PF04115 Ureidoglycolate lyase CFM90_16955 PF01546 Peptidase family M20/M25/M40 CFM90_16955 PF07687 Peptidase dimerisation domain CFM90_16965 PF03960 ArsC family CFM90_16980 PF00753 Metallo-beta-lactamase superfamily CFM90_16985 PF03330 Lytic transglycolase CFM90_16985 PF05036 Sporulation related domain CFM90_16990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_16995 PF02021 Uncharacterised protein family UPF0102 CFM90_17010 PF10518 TAT (twin-arginine translocation) pathway signal sequence CFM90_17010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_17010 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CFM90_17015 PF00892 EamA-like transporter family CFM90_17050 PF08534 Redoxin CFM90_17055 PF00149 Calcineurin-like phosphoesterase CFM90_17055 PF02872 5'-nucleotidase, C-terminal domain CFM90_17085 PF01695 IstB-like ATP binding protein CFM90_17090 PF00665 Integrase core domain CFM90_17110 PF02796 Helix-turn-helix domain of resolvase CFM90_17110 PF00239 Resolvase, N terminal domain CFM90_17125 PF00375 Sodium:dicarboxylate symporter family CFM90_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_17130 PF03466 LysR substrate binding domain CFM90_17135 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_17140 PF07690 Major Facilitator Superfamily CFM90_17145 PF01810 LysE type translocator CFM90_17165 PF02560 Cyanate lyase C-terminal domain CFM90_17170 PF00155 Aminotransferase class I and II CFM90_17170 PF00392 Bacterial regulatory proteins, gntR family CFM90_17175 PF01979 Amidohydrolase family CFM90_17190 PF00211 Adenylate and Guanylate cyclase catalytic domain CFM90_17210 PF13181 Tetratricopeptide repeat CFM90_17220 PF00196 Bacterial regulatory proteins, luxR family CFM90_17220 PF00072 Response regulator receiver domain CFM90_17235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFM90_17235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_17250 PF00313 'Cold-shock' DNA-binding domain CFM90_17290 PF01381 Helix-turn-helix CFM90_17315 PF00990 Diguanylate cyclase, GGDEF domain CFM90_17315 PF00563 EAL domain CFM90_17315 PF01590 GAF domain CFM90_17315 PF00360 Phytochrome region CFM90_17330 PF13180 PDZ domain CFM90_17340 PF00106 short chain dehydrogenase CFM90_17350 PF00672 HAMP domain CFM90_17350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_17350 PF02203 Tar ligand binding domain homologue CFM90_17375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_17375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFM90_17380 PF00107 Zinc-binding dehydrogenase CFM90_17380 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_17385 PF02954 Bacterial regulatory protein, Fis family CFM90_17385 PF01590 GAF domain CFM90_17385 PF00158 Sigma-54 interaction domain CFM90_17390 PF00171 Aldehyde dehydrogenase family CFM90_17395 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CFM90_17400 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CFM90_17405 PF00929 Exonuclease CFM90_17405 PF08411 Exonuclease C-terminal CFM90_17435 PF00392 Bacterial regulatory proteins, gntR family CFM90_17435 PF00155 Aminotransferase class I and II CFM90_17450 PF00482 Type II secretion system (T2SS), protein F CFM90_17455 PF00437 Type II/IV secretion system protein CFM90_17460 PF00263 Bacterial type II and III secretion system protein CFM90_17460 PF03958 Bacterial type II/III secretion system short domain CFM90_17485 PF07963 Prokaryotic N-terminal methylation motif CFM90_17485 PF11612 Type II secretion system (T2SS), protein J CFM90_17490 PF07963 Prokaryotic N-terminal methylation motif CFM90_17490 PF02501 Type II secretion system (T2SS), protein I CFM90_17495 PF07963 Prokaryotic N-terminal methylation motif CFM90_17495 PF12019 Type II transport protein GspH CFM90_17500 PF07963 Prokaryotic N-terminal methylation motif CFM90_17500 PF08334 Type II secretion system (T2SS), protein G CFM90_17515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFM90_17520 PF01037 Lrp/AsnC ligand binding domain CFM90_17530 PF03797 Autotransporter beta-domain CFM90_17530 PF12951 Passenger-associated-transport-repeat CFM90_17530 PF00082 Subtilase family CFM90_17550 PF02525 Flavodoxin-like fold CFM90_17555 PF00999 Sodium/hydrogen exchanger family CFM90_17555 PF02254 TrkA-N domain CFM90_17570 PF07687 Peptidase dimerisation domain CFM90_17570 PF01546 Peptidase family M20/M25/M40 CFM90_17580 PF13609 Gram-negative porin CFM90_17585 PF03401 Tripartite tricarboxylate transporter family receptor CFM90_17590 PF00486 Transcriptional regulatory protein, C terminal CFM90_17590 PF00072 Response regulator receiver domain CFM90_17595 PF01355 High potential iron-sulfur protein CFM90_17745 PF07484 Phage Tail Collar Domain CFM90_17800 PF01555 DNA methylase CFM90_17890 PF00589 Phage integrase family CFM90_17900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFM90_17935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_17935 PF09456 RcsC Alpha-Beta-Loop (ABL) CFM90_17935 PF00072 Response regulator receiver domain CFM90_17935 PF00512 His Kinase A (phospho-acceptor) domain CFM90_17940 PF00196 Bacterial regulatory proteins, luxR family CFM90_17940 PF00072 Response regulator receiver domain CFM90_17945 PF01545 Cation efflux family CFM90_17945 PF16916 Dimerisation domain of Zinc Transporter CFM90_17980 PF07690 Major Facilitator Superfamily CFM90_17985 PF00924 Mechanosensitive ion channel CFM90_18000 PF00486 Transcriptional regulatory protein, C terminal CFM90_18000 PF00072 Response regulator receiver domain CFM90_18005 PF00512 His Kinase A (phospho-acceptor) domain CFM90_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_18005 PF00672 HAMP domain CFM90_18020 PF07690 Major Facilitator Superfamily CFM90_18025 PF07690 Major Facilitator Superfamily CFM90_18035 PF04349 Periplasmic glucan biosynthesis protein, MdoG CFM90_18040 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CFM90_18060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFM90_18060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFM90_18075 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_18080 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_18085 PF17912 MalK OB fold domain CFM90_18085 PF00005 ABC transporter CFM90_18090 PF17912 MalK OB fold domain CFM90_18090 PF00005 ABC transporter CFM90_18095 PF01266 FAD dependent oxidoreductase CFM90_18095 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CFM90_18100 PF08220 DeoR-like helix-turn-helix domain CFM90_18100 PF00455 DeoR C terminal sensor domain CFM90_18110 PF04333 MlaA lipoprotein CFM90_18140 PF01526 Tn3 transposase DDE domain CFM90_18140 PF13700 Domain of unknown function (DUF4158) CFM90_18155 PF00011 Hsp20/alpha crystallin family CFM90_18160 PF00011 Hsp20/alpha crystallin family CFM90_18170 PF00012 Hsp70 protein CFM90_18190 PF00484 Carbonic anhydrase CFM90_18200 PF00166 Chaperonin 10 Kd subunit CFM90_18205 PF00118 TCP-1/cpn60 chaperonin family CFM90_18215 PF03441 FAD binding domain of DNA photolyase CFM90_18215 PF00875 DNA photolyase CFM90_18225 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CFM90_18225 PF01464 Transglycosylase SLT domain CFM90_18240 PF00665 Integrase core domain CFM90_18245 PF01695 IstB-like ATP binding protein CFM90_18250 PF03421 YopJ Serine/Threonine acetyltransferase CFM90_18255 PF13700 Domain of unknown function (DUF4158) CFM90_18255 PF01526 Tn3 transposase DDE domain CFM90_18260 PF00239 Resolvase, N terminal domain CFM90_18260 PF02796 Helix-turn-helix domain of resolvase CFM90_18270 PF03421 YopJ Serine/Threonine acetyltransferase CFM90_18275 PF00106 short chain dehydrogenase CFM90_18285 PF08359 YsiA-like protein, C-terminal region CFM90_18285 PF00440 Bacterial regulatory proteins, tetR family CFM90_18300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_18305 PF03466 LysR substrate binding domain CFM90_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_18310 PF01494 FAD binding domain CFM90_18315 PF03466 LysR substrate binding domain CFM90_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_18335 PF02899 Phage integrase, N-terminal SAM-like domain CFM90_18335 PF00589 Phage integrase family CFM90_18350 PF01548 Transposase CFM90_18350 PF02371 Transposase IS116/IS110/IS902 family CFM90_18360 PF03951 Glutamine synthetase, beta-Grasp domain CFM90_18360 PF00120 Glutamine synthetase, catalytic domain CFM90_18370 PF01580 FtsK/SpoIIIE family CFM90_18370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CFM90_18370 PF17854 FtsK alpha domain CFM90_18370 PF09397 Ftsk gamma domain CFM90_18390 PF00295 Glycosyl hydrolases family 28 CFM90_18425 PF12833 Helix-turn-helix domain CFM90_18440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFM90_18440 PF18269 T3SS EscN ATPase C-terminal domain CFM90_18440 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFM90_18455 PF01514 Secretory protein of YscJ/FliF family CFM90_18470 PF01312 FlhB HrpN YscU SpaS Family CFM90_18475 PF00771 FHIPEP family CFM90_18480 PF09483 Type III secretion protein (HpaP) CFM90_18490 PF00813 FliP family CFM90_18495 PF01313 Bacterial export proteins, family 3 CFM90_18530 PF00072 Response regulator receiver domain CFM90_18530 PF00486 Transcriptional regulatory protein, C terminal CFM90_18535 PF00196 Bacterial regulatory proteins, luxR family CFM90_18535 PF00072 Response regulator receiver domain CFM90_18545 PF04542 Sigma-70 region 2 CFM90_18545 PF08281 Sigma-70, region 4 CFM90_18590 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_18590 PF01464 Transglycosylase SLT domain CFM90_18595 PF02203 Tar ligand binding domain homologue CFM90_18595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_18595 PF00672 HAMP domain CFM90_18620 PF00293 NUDIX domain CFM90_18620 PF01467 Cytidylyltransferase-like CFM90_18625 PF07690 Major Facilitator Superfamily CFM90_18630 PF00295 Glycosyl hydrolases family 28 CFM90_18635 PF08450 SMP-30/Gluconolactonase/LRE-like region CFM90_18640 PF01370 NAD dependent epimerase/dehydratase family CFM90_18645 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CFM90_18645 PF08666 SAF domain CFM90_18650 PF13378 Enolase C-terminal domain-like CFM90_18650 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CFM90_18655 PF07690 Major Facilitator Superfamily CFM90_18660 PF00171 Aldehyde dehydrogenase family CFM90_18665 PF00701 Dihydrodipicolinate synthetase family CFM90_18680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_18680 PF03466 LysR substrate binding domain CFM90_18690 PF00892 EamA-like transporter family CFM90_18700 PF00529 HlyD membrane-fusion protein of T1SS CFM90_18700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_18705 PF00873 AcrB/AcrD/AcrF family CFM90_18710 PF02321 Outer membrane efflux protein CFM90_18715 PF00440 Bacterial regulatory proteins, tetR family CFM90_18715 PF17934 Tetracyclin repressor-like, C-terminal domain CFM90_18725 PF06039 Malate:quinone oxidoreductase (Mqo) CFM90_18730 PF00990 Diguanylate cyclase, GGDEF domain CFM90_18730 PF03707 Bacterial signalling protein N terminal repeat CFM90_18730 PF00563 EAL domain CFM90_18740 PF07715 TonB-dependent Receptor Plug Domain CFM90_18740 PF00593 TonB dependent receptor CFM90_18745 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CFM90_18745 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFM90_18760 PF11953 Domain of unknown function (DUF3470) CFM90_18760 PF00037 4Fe-4S binding domain CFM90_18775 PF03144 Elongation factor Tu domain 2 CFM90_18775 PF00009 Elongation factor Tu GTP binding domain CFM90_18775 PF03764 Elongation factor G, domain IV CFM90_18775 PF14492 Elongation Factor G, domain II CFM90_18775 PF00679 Elongation factor G C-terminus CFM90_18785 PF03600 Citrate transporter CFM90_18790 PF01381 Helix-turn-helix CFM90_18795 PF02811 PHP domain CFM90_18795 PF14579 Helix-hairpin-helix motif CFM90_18795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFM90_18795 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFM90_18810 PF07690 Major Facilitator Superfamily CFM90_18815 PF00440 Bacterial regulatory proteins, tetR family CFM90_18825 PF00155 Aminotransferase class I and II CFM90_18840 PF08659 KR domain CFM90_18840 PF00668 Condensation domain CFM90_18840 PF16197 Ketoacyl-synthetase C-terminal extension CFM90_18840 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_18840 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_18840 PF13193 AMP-binding enzyme C-terminal domain CFM90_18840 PF00501 AMP-binding enzyme CFM90_18840 PF14765 Polyketide synthase dehydratase CFM90_18840 PF00550 Phosphopantetheine attachment site CFM90_18855 PF16861 Carbamoyltransferase C-terminus CFM90_18855 PF02543 Carbamoyltransferase N-terminus CFM90_18860 PF00501 AMP-binding enzyme CFM90_18885 PF00133 tRNA synthetases class I (I, L, M and V) CFM90_18885 PF08264 Anticodon-binding domain of tRNA CFM90_18885 PF10458 Valyl tRNA synthetase tRNA binding arm CFM90_18900 PF00765 Autoinducer synthase CFM90_18905 PF03472 Autoinducer binding domain CFM90_18905 PF00196 Bacterial regulatory proteins, luxR family CFM90_18980 PF00691 OmpA family CFM90_18980 PF04972 BON domain CFM90_19035 PF04717 Type VI secretion system, phage-baseplate injector CFM90_19040 PF00004 ATPase family associated with various cellular activities (AAA) CFM90_19040 PF07724 AAA domain (Cdc48 subfamily) CFM90_19040 PF17871 AAA lid domain CFM90_19040 PF10431 C-terminal, D2-small domain, of ClpB protein CFM90_19125 PF00982 Glycosyltransferase family 20 CFM90_19145 PF01958 Domain of unknown function DUF108 CFM90_19145 PF03447 Homoserine dehydrogenase, NAD binding domain CFM90_19175 PF03150 Di-haem cytochrome c peroxidase CFM90_19190 PF01063 Amino-transferase class IV CFM90_19210 PF00892 EamA-like transporter family CFM90_19215 PF00067 Cytochrome P450 CFM90_19225 PF00005 ABC transporter CFM90_19230 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_19230 PF00005 ABC transporter CFM90_19250 PF01494 FAD binding domain CFM90_19265 PF00472 RF-1 domain CFM90_19270 PF00155 Aminotransferase class I and II CFM90_19275 PF00106 short chain dehydrogenase CFM90_19290 PF03301 Tryptophan 2,3-dioxygenase CFM90_19300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_19300 PF03466 LysR substrate binding domain CFM90_19305 PF04209 homogentisate 1,2-dioxygenase CFM90_19325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_19325 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_19325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_19345 PF01168 Alanine racemase, N-terminal domain CFM90_19350 PF05598 Transposase domain (DUF772) CFM90_19350 PF01609 Transposase DDE domain CFM90_19355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_19355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFM90_19360 PF02885 Glycosyl transferase family, helical bundle domain CFM90_19360 PF00591 Glycosyl transferase family, a/b domain CFM90_19365 PF00218 Indole-3-glycerol phosphate synthase CFM90_19370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFM90_19370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFM90_19375 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CFM90_19375 PF01243 Pyridoxamine 5'-phosphate oxidase CFM90_19380 PF03466 LysR substrate binding domain CFM90_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_19385 PF01717 Cobalamin-independent synthase, Catalytic domain CFM90_19385 PF08267 Cobalamin-independent synthase, N-terminal domain CFM90_19390 PF05643 Putative bacterial lipoprotein (DUF799) CFM90_19400 PF03783 Curli production assembly/transport component CsgG CFM90_19410 PF00378 Enoyl-CoA hydratase/isomerase CFM90_19415 PF00873 AcrB/AcrD/AcrF family CFM90_19425 PF02321 Outer membrane efflux protein CFM90_19435 PF07690 Major Facilitator Superfamily CFM90_19440 PF03352 Methyladenine glycosylase CFM90_19445 PF01544 CorA-like Mg2+ transporter protein CFM90_19450 PF01047 MarR family CFM90_19455 PF07690 Major Facilitator Superfamily CFM90_19460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_19460 PF03466 LysR substrate binding domain CFM90_19465 PF00857 Isochorismatase family CFM90_19475 PF05425 Copper resistance protein D CFM90_19480 PF04234 CopC domain CFM90_19485 PF05275 Copper resistance protein B precursor (CopB) CFM90_19490 PF00394 Multicopper oxidase CFM90_19490 PF07732 Multicopper oxidase CFM90_19490 PF07731 Multicopper oxidase CFM90_19495 PF00072 Response regulator receiver domain CFM90_19495 PF00486 Transcriptional regulatory protein, C terminal CFM90_19500 PF00512 His Kinase A (phospho-acceptor) domain CFM90_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_19500 PF00672 HAMP domain CFM90_19505 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CFM90_19505 PF12833 Helix-turn-helix domain CFM90_19510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_19510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_19510 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_19515 PF13193 AMP-binding enzyme C-terminal domain CFM90_19515 PF00501 AMP-binding enzyme CFM90_19520 PF00171 Aldehyde dehydrogenase family CFM90_19525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFM90_19525 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CFM90_19530 PF00378 Enoyl-CoA hydratase/isomerase CFM90_19535 PF00378 Enoyl-CoA hydratase/isomerase CFM90_19540 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_19545 PF01037 Lrp/AsnC ligand binding domain CFM90_19555 PF00501 AMP-binding enzyme CFM90_19555 PF00550 Phosphopantetheine attachment site CFM90_19555 PF00668 Condensation domain CFM90_19555 PF13193 AMP-binding enzyme C-terminal domain CFM90_19555 PF00975 Thioesterase domain CFM90_19560 PF00975 Thioesterase domain CFM90_19560 PF00501 AMP-binding enzyme CFM90_19560 PF13193 AMP-binding enzyme C-terminal domain CFM90_19560 PF00550 Phosphopantetheine attachment site CFM90_19560 PF00668 Condensation domain CFM90_19565 PF03621 MbtH-like protein CFM90_19570 PF12706 Beta-lactamase superfamily domain CFM90_19570 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain CFM90_19575 PF00664 ABC transporter transmembrane region CFM90_19575 PF00005 ABC transporter CFM90_19585 PF08281 Sigma-70, region 4 CFM90_19585 PF04542 Sigma-70 region 2 CFM90_19590 PF01757 Acyltransferase family CFM90_19595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CFM90_19625 PF03824 High-affinity nickel-transport protein CFM90_19635 PF02514 CobN/Magnesium Chelatase CFM90_19640 PF13519 von Willebrand factor type A domain CFM90_19640 PF07728 AAA domain (dynein-related subfamily) CFM90_19640 PF17863 AAA lid domain CFM90_19645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_19645 PF14824 Sirohaem biosynthesis protein central CFM90_19645 PF10414 Sirohaem synthase dimerisation region CFM90_19650 PF01903 CbiX CFM90_19655 PF01888 CbiD CFM90_19660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_19665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_19670 PF01890 Cobalamin synthesis G C-terminus CFM90_19675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFM90_19675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFM90_19680 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFM90_19680 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFM90_19685 PF12557 Cob(I)alamin adenosyltransferase N terminal CFM90_19685 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CFM90_19690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CFM90_19690 PF07685 CobB/CobQ-like glutamine amidotransferase domain CFM90_19695 PF00881 Nitroreductase family CFM90_19725 PF00175 Oxidoreductase NAD-binding domain CFM90_19725 PF00970 Oxidoreductase FAD-binding domain CFM90_19725 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_19730 PF01883 Iron-sulfur cluster assembly protein CFM90_19735 PF05138 Phenylacetic acid catabolic protein CFM90_19740 PF06243 Phenylacetic acid degradation B CFM90_19745 PF05138 Phenylacetic acid catabolic protein CFM90_19750 PF05922 Peptidase inhibitor I9 CFM90_19750 PF00082 Subtilase family CFM90_19775 PF01584 CheW-like domain CFM90_19775 PF00072 Response regulator receiver domain CFM90_19785 PF00753 Metallo-beta-lactamase superfamily CFM90_19830 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CFM90_19830 PF12833 Helix-turn-helix domain CFM90_19835 PF00106 short chain dehydrogenase CFM90_19860 PF00553 Cellulose binding domain CFM90_19860 PF00041 Fibronectin type III domain CFM90_19860 PF01341 Glycosyl hydrolases family 6 CFM90_19925 PF02371 Transposase IS116/IS110/IS902 family CFM90_19925 PF01548 Transposase CFM90_19945 PF00578 AhpC/TSA family CFM90_19970 PF09828 Chromate resistance exported protein CFM90_19975 PF02417 Chromate transporter CFM90_19980 PF09828 Chromate resistance exported protein CFM90_19985 PF02583 Metal-sensitive transcriptional repressor CFM90_19990 PF03824 High-affinity nickel-transport protein CFM90_19995 PF01979 Amidohydrolase family CFM90_20000 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_20000 PF17287 POTRA domain CFM90_20000 PF08479 POTRA domain, ShlB-type CFM90_20035 PF13018 Extended Signal Peptide of Type V secretion system CFM90_20035 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CFM90_20035 PF05860 haemagglutination activity domain CFM90_20035 PF13332 Hemagglutinin repeat CFM90_20035 PF05594 Haemagluttinin repeat CFM90_20035 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CFM90_20035 PF05860 haemagglutination activity domain CFM90_20035 PF05594 Haemagluttinin repeat CFM90_20035 PF13018 Extended Signal Peptide of Type V secretion system CFM90_20035 PF13332 Hemagglutinin repeat CFM90_20050 PF07690 Major Facilitator Superfamily CFM90_20055 PF03466 LysR substrate binding domain CFM90_20055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_20060 PF00149 Calcineurin-like phosphoesterase CFM90_20070 PF11838 ERAP1-like C-terminal domain CFM90_20070 PF01433 Peptidase family M1 domain CFM90_20080 PF00873 AcrB/AcrD/AcrF family CFM90_20085 PF13533 Biotin-lipoyl like CFM90_20095 PF05598 Transposase domain (DUF772) CFM90_20095 PF01609 Transposase DDE domain CFM90_20110 PF13460 NAD(P)H-binding CFM90_20115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_20115 PF00512 His Kinase A (phospho-acceptor) domain CFM90_20120 PF00072 Response regulator receiver domain CFM90_20120 PF00486 Transcriptional regulatory protein, C terminal CFM90_20130 PF00012 Hsp70 protein CFM90_20135 PF01566 Natural resistance-associated macrophage protein CFM90_20140 PF00990 Diguanylate cyclase, GGDEF domain CFM90_20140 PF05230 MASE2 domain CFM90_20145 PF16671 Actin cross-linking domain CFM90_20145 PF04717 Type VI secretion system, phage-baseplate injector CFM90_20165 PF00924 Mechanosensitive ion channel CFM90_20185 PF02350 UDP-N-acetylglucosamine 2-epimerase CFM90_20200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_20200 PF00672 HAMP domain CFM90_20200 PF02203 Tar ligand binding domain homologue CFM90_20210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_20210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFM90_20255 PF01230 HIT domain CFM90_20260 PF00873 AcrB/AcrD/AcrF family CFM90_20265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_20265 PF00529 HlyD membrane-fusion protein of T1SS CFM90_20270 PF02321 Outer membrane efflux protein CFM90_20280 PF00486 Transcriptional regulatory protein, C terminal CFM90_20280 PF00072 Response regulator receiver domain CFM90_20285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_20285 PF00672 HAMP domain CFM90_20285 PF00512 His Kinase A (phospho-acceptor) domain CFM90_20290 PF01548 Transposase CFM90_20290 PF02371 Transposase IS116/IS110/IS902 family CFM90_20295 PF07687 Peptidase dimerisation domain CFM90_20295 PF01546 Peptidase family M20/M25/M40 CFM90_20310 PF13419 Haloacid dehalogenase-like hydrolase CFM90_20320 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFM90_20325 PF01037 Lrp/AsnC ligand binding domain CFM90_20330 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_20340 PF00005 ABC transporter CFM90_20345 PF03466 LysR substrate binding domain CFM90_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_20350 PF01370 NAD dependent epimerase/dehydratase family CFM90_20355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFM90_20370 PF02321 Outer membrane efflux protein CFM90_20380 PF13533 Biotin-lipoyl like CFM90_20390 PF07690 Major Facilitator Superfamily CFM90_20405 PF03466 LysR substrate binding domain CFM90_20405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_20425 PF00107 Zinc-binding dehydrogenase CFM90_20425 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_20430 PF07690 Major Facilitator Superfamily CFM90_20435 PF00005 ABC transporter CFM90_20450 PF01738 Dienelactone hydrolase family CFM90_20450 PF00156 Phosphoribosyl transferase domain CFM90_20455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFM90_20455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFM90_20460 PF03328 HpcH/HpaI aldolase/citrate lyase family CFM90_20465 PF04183 IucA / IucC family CFM90_20465 PF06276 Ferric iron reductase FhuF-like transporter CFM90_20470 PF06276 Ferric iron reductase FhuF-like transporter CFM90_20470 PF04183 IucA / IucC family CFM90_20475 PF07690 Major Facilitator Superfamily CFM90_20480 PF06276 Ferric iron reductase FhuF-like transporter CFM90_20480 PF04183 IucA / IucC family CFM90_20485 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFM90_20490 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_20495 PF00593 TonB dependent receptor CFM90_20495 PF07715 TonB-dependent Receptor Plug Domain CFM90_20505 PF00593 TonB dependent receptor CFM90_20505 PF07715 TonB-dependent Receptor Plug Domain CFM90_20515 PF07690 Major Facilitator Superfamily CFM90_20565 PF00501 AMP-binding enzyme CFM90_20590 PF13006 Insertion element 4 transposase N-terminal CFM90_20590 PF01609 Transposase DDE domain CFM90_20595 PF13195 Protein of unknown function (DUF4011) CFM90_20595 PF13087 AAA domain CFM90_20595 PF13086 AAA domain CFM90_20595 PF13086 AAA domain CFM90_20595 PF13195 Protein of unknown function (DUF4011) CFM90_20595 PF13087 AAA domain CFM90_20610 PF00360 Phytochrome region CFM90_20610 PF01590 GAF domain CFM90_20610 PF00990 Diguanylate cyclase, GGDEF domain CFM90_20610 PF00563 EAL domain CFM90_20620 PF01590 GAF domain CFM90_20620 PF00563 EAL domain CFM90_20620 PF00360 Phytochrome region CFM90_20620 PF00990 Diguanylate cyclase, GGDEF domain CFM90_20645 PF18269 T3SS EscN ATPase C-terminal domain CFM90_20645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFM90_20650 PF02108 Flagellar assembly protein FliH CFM90_20655 PF01706 FliG C-terminal domain CFM90_20655 PF14842 FliG N-terminal domain CFM90_20655 PF14841 FliG middle domain CFM90_20660 PF01514 Secretory protein of YscJ/FliF family CFM90_20660 PF08345 Flagellar M-ring protein C-terminal CFM90_20665 PF02049 Flagellar hook-basal body complex protein FliE CFM90_20675 PF00535 Glycosyl transferase family 2 CFM90_20680 PF01047 MarR family CFM90_20690 PF02561 Flagellar protein FliS CFM90_20695 PF07196 Flagellin hook IN motif CFM90_20695 PF02465 Flagellar hook-associated protein 2 N-terminus CFM90_20695 PF07195 Flagellar hook-associated protein 2 C-terminus CFM90_20700 PF00700 Bacterial flagellin C-terminal helical region CFM90_20700 PF00669 Bacterial flagellin N-terminal helical region CFM90_20705 PF00196 Bacterial regulatory proteins, luxR family CFM90_20705 PF00072 Response regulator receiver domain CFM90_20710 PF00563 EAL domain CFM90_20710 PF03707 Bacterial signalling protein N terminal repeat CFM90_20710 PF00990 Diguanylate cyclase, GGDEF domain CFM90_20720 PF02154 Flagellar motor switch protein FliM CFM90_20720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFM90_20725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CFM90_20725 PF16973 Flagellar motor switch protein FliN N-terminal CFM90_20730 PF04347 Flagellar biosynthesis protein, FliO CFM90_20735 PF00813 FliP family CFM90_20740 PF01313 Bacterial export proteins, family 3 CFM90_20745 PF01311 Bacterial export proteins, family 1 CFM90_20755 PF01553 Acyltransferase CFM90_20765 PF00550 Phosphopantetheine attachment site CFM90_20775 PF00501 AMP-binding enzyme CFM90_20775 PF13193 AMP-binding enzyme C-terminal domain CFM90_20785 PF00221 Aromatic amino acid lyase CFM90_20805 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_20805 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_20820 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_20820 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_20825 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_20825 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_20835 PF08241 Methyltransferase domain CFM90_20840 PF04820 Tryptophan halogenase CFM90_20850 PF00669 Bacterial flagellin N-terminal helical region CFM90_20855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFM90_20855 PF00460 Flagella basal body rod protein CFM90_20860 PF10135 Rod binding protein CFM90_20860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFM90_20865 PF02119 Flagellar P-ring protein CFM90_20870 PF02107 Flagellar L-ring protein CFM90_20875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFM90_20875 PF00460 Flagella basal body rod protein CFM90_20880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFM90_20880 PF00460 Flagella basal body rod protein CFM90_20885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFM90_20885 PF07559 Flagellar basal body protein FlaE CFM90_20885 PF00460 Flagella basal body rod protein CFM90_20890 PF13861 FlgD Tudor-like domain CFM90_20890 PF13860 FlgD Ig-like domain CFM90_20890 PF03963 Flagellar hook capping protein - N-terminal region CFM90_20895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CFM90_20895 PF00460 Flagella basal body rod protein CFM90_20900 PF00460 Flagella basal body rod protein CFM90_20905 PF13144 Chaperone for flagella basal body P-ring formation CFM90_20905 PF17656 FlgA N-terminal domain CFM90_20920 PF00196 Bacterial regulatory proteins, luxR family CFM90_20925 PF13609 Gram-negative porin CFM90_20930 PF07702 UTRA domain CFM90_20930 PF00392 Bacterial regulatory proteins, gntR family CFM90_20935 PF00816 H-NS histone family CFM90_20945 PF00563 EAL domain CFM90_20945 PF00990 Diguanylate cyclase, GGDEF domain CFM90_20945 PF03707 Bacterial signalling protein N terminal repeat CFM90_20950 PF05433 Glycine zipper 2TM domain CFM90_20955 PF11791 Aconitate B N-terminal domain CFM90_20955 PF06434 Aconitate hydratase 2 N-terminus CFM90_20955 PF00330 Aconitase family (aconitate hydratase) CFM90_20965 PF00694 Aconitase C-terminal domain CFM90_20965 PF00330 Aconitase family (aconitate hydratase) CFM90_20970 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_20985 PF02566 OsmC-like protein CFM90_20990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CFM90_20995 PF01799 [2Fe-2S] binding domain CFM90_20995 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_21010 PF08502 LeuA allosteric (dimerisation) domain CFM90_21010 PF00682 HMGL-like CFM90_21020 PF13411 MerR HTH family regulatory protein CFM90_21045 PF00582 Universal stress protein family CFM90_21055 PF03060 Nitronate monooxygenase CFM90_21060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_21060 PF00672 HAMP domain CFM90_21060 PF00512 His Kinase A (phospho-acceptor) domain CFM90_21065 PF00486 Transcriptional regulatory protein, C terminal CFM90_21065 PF00072 Response regulator receiver domain CFM90_21070 PF00529 HlyD membrane-fusion protein of T1SS CFM90_21070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_21075 PF00873 AcrB/AcrD/AcrF family CFM90_21080 PF02321 Outer membrane efflux protein CFM90_21090 PF10400 Virulence activator alpha C-term CFM90_21090 PF03551 Transcriptional regulator PadR-like family CFM90_21095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_21095 PF03466 LysR substrate binding domain CFM90_21100 PF03060 Nitronate monooxygenase CFM90_21120 PF02203 Tar ligand binding domain homologue CFM90_21120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_21120 PF00672 HAMP domain CFM90_21155 PF00664 ABC transporter transmembrane region CFM90_21155 PF03412 Peptidase C39 family CFM90_21155 PF00005 ABC transporter CFM90_21160 PF13533 Biotin-lipoyl like CFM90_21175 PF00535 Glycosyl transferase family 2 CFM90_21180 PF14883 Hypothetical glycosyl hydrolase family 13 CFM90_21180 PF01522 Polysaccharide deacetylase CFM90_21190 PF00196 Bacterial regulatory proteins, luxR family CFM90_21205 PF01554 MatE CFM90_21210 PF13520 Amino acid permease CFM90_21215 PF00990 Diguanylate cyclase, GGDEF domain CFM90_21215 PF07694 5TMR of 5TMR-LYT CFM90_21230 PF01204 Trehalase CFM90_21235 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_21235 PF00571 CBS domain CFM90_21255 PF07687 Peptidase dimerisation domain CFM90_21255 PF01546 Peptidase family M20/M25/M40 CFM90_21265 PF05598 Transposase domain (DUF772) CFM90_21265 PF01609 Transposase DDE domain CFM90_21305 PF00583 Acetyltransferase (GNAT) family CFM90_21315 PF04349 Periplasmic glucan biosynthesis protein, MdoG CFM90_21330 PF01470 Pyroglutamyl peptidase CFM90_21350 PF08447 PAS fold CFM90_21350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_21355 PF00563 EAL domain CFM90_21355 PF00990 Diguanylate cyclase, GGDEF domain CFM90_21355 PF03707 Bacterial signalling protein N terminal repeat CFM90_21360 PF00563 EAL domain CFM90_21360 PF00990 Diguanylate cyclase, GGDEF domain CFM90_21360 PF05231 MASE1 CFM90_21360 PF08447 PAS fold CFM90_21360 PF08448 PAS fold CFM90_21360 PF13426 PAS domain CFM90_21370 PF07664 Ferrous iron transport protein B C terminus CFM90_21370 PF04023 FeoA domain CFM90_21370 PF17910 FeoB cytosolic helical domain CFM90_21370 PF02421 Ferrous iron transport protein B CFM90_21370 PF07670 Nucleoside recognition CFM90_21390 PF01475 Ferric uptake regulator family CFM90_21395 PF13192 Thioredoxin domain CFM90_21395 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_21400 PF10417 C-terminal domain of 1-Cys peroxiredoxin CFM90_21400 PF00578 AhpC/TSA family CFM90_21405 PF00593 TonB dependent receptor CFM90_21405 PF07715 TonB-dependent Receptor Plug Domain CFM90_21410 PF05171 Haemin-degrading HemS.ChuX domain CFM90_21415 PF00534 Glycosyl transferases group 1 CFM90_21415 PF08323 Starch synthase catalytic domain CFM90_21420 PF11896 Domain of unknown function (DUF3416) CFM90_21420 PF00128 Alpha amylase, catalytic domain CFM90_21425 PF16657 Maltogenic Amylase, C-terminal domain CFM90_21425 PF00128 Alpha amylase, catalytic domain CFM90_21430 PF02806 Alpha amylase, C-terminal all-beta domain CFM90_21430 PF00128 Alpha amylase, catalytic domain CFM90_21430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CFM90_21435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CFM90_21435 PF00128 Alpha amylase, catalytic domain CFM90_21440 PF00128 Alpha amylase, catalytic domain CFM90_21440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CFM90_21440 PF11941 Domain of unknown function (DUF3459) CFM90_21445 PF02446 4-alpha-glucanotransferase CFM90_21450 PF00128 Alpha amylase, catalytic domain CFM90_21460 PF04909 Amidohydrolase CFM90_21515 PF00171 Aldehyde dehydrogenase family CFM90_21520 PF02954 Bacterial regulatory protein, Fis family CFM90_21520 PF02830 V4R domain CFM90_21520 PF00158 Sigma-54 interaction domain CFM90_21520 PF06505 Activator of aromatic catabolism CFM90_21525 PF07993 Male sterility protein CFM90_21525 PF00550 Phosphopantetheine attachment site CFM90_21525 PF00501 AMP-binding enzyme CFM90_21530 PF00171 Aldehyde dehydrogenase family CFM90_21535 PF00378 Enoyl-CoA hydratase/isomerase CFM90_21540 PF01047 MarR family CFM90_21545 PF00111 2Fe-2S iron-sulfur cluster binding domain CFM90_21545 PF00175 Oxidoreductase NAD-binding domain CFM90_21550 PF00355 Rieske [2Fe-2S] domain CFM90_21555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_21555 PF03466 LysR substrate binding domain CFM90_21560 PF00072 Response regulator receiver domain CFM90_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_21580 PF05598 Transposase domain (DUF772) CFM90_21580 PF01609 Transposase DDE domain CFM90_21590 PF00069 Protein kinase domain CFM90_21605 PF01048 Phosphorylase superfamily CFM90_21605 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CFM90_21630 PF01548 Transposase CFM90_21630 PF02371 Transposase IS116/IS110/IS902 family CFM90_21645 PF01609 Transposase DDE domain CFM90_21645 PF05598 Transposase domain (DUF772) CFM90_21650 PF01609 Transposase DDE domain CFM90_21650 PF05598 Transposase domain (DUF772) CFM90_21655 PF01609 Transposase DDE domain CFM90_21655 PF05598 Transposase domain (DUF772) CFM90_21670 PF03061 Thioesterase superfamily CFM90_21690 PF00202 Aminotransferase class-III CFM90_21695 PF02600 Disulfide bond formation protein DsbB CFM90_21705 PF00561 alpha/beta hydrolase fold CFM90_21710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFM90_21710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFM90_21730 PF01925 Sulfite exporter TauE/SafE CFM90_21760 PF10282 Lactonase, 7-bladed beta-propeller CFM90_21765 PF07690 Major Facilitator Superfamily CFM90_21815 PF08241 Methyltransferase domain CFM90_21820 PF00266 Aminotransferase class-V CFM90_21860 PF00668 Condensation domain CFM90_21860 PF00975 Thioesterase domain CFM90_21860 PF00550 Phosphopantetheine attachment site CFM90_21860 PF13193 AMP-binding enzyme C-terminal domain CFM90_21860 PF00501 AMP-binding enzyme CFM90_21865 PF03621 MbtH-like protein CFM90_21870 PF01554 MatE CFM90_21880 PF00150 Cellulase (glycosyl hydrolase family 5) CFM90_21900 PF08334 Type II secretion system (T2SS), protein G CFM90_21900 PF07963 Prokaryotic N-terminal methylation motif CFM90_21905 PF00482 Type II secretion system (T2SS), protein F CFM90_21910 PF00437 Type II/IV secretion system protein CFM90_21935 PF00263 Bacterial type II and III secretion system protein CFM90_21935 PF03958 Bacterial type II/III secretion system short domain CFM90_21940 PF07963 Prokaryotic N-terminal methylation motif CFM90_21940 PF08334 Type II secretion system (T2SS), protein G CFM90_21945 PF14245 Type IV pilin PilA CFM90_21945 PF07963 Prokaryotic N-terminal methylation motif CFM90_21960 PF01095 Pectinesterase CFM90_21970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFM90_21970 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_21985 PF00892 EamA-like transporter family CFM90_21990 PF00990 Diguanylate cyclase, GGDEF domain CFM90_21990 PF00072 Response regulator receiver domain CFM90_22005 PF13361 UvrD-like helicase C-terminal domain CFM90_22005 PF00580 UvrD/REP helicase N-terminal domain CFM90_22020 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CFM90_22025 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CFM90_22030 PF06506 Propionate catabolism activator CFM90_22030 PF02954 Bacterial regulatory protein, Fis family CFM90_22030 PF00158 Sigma-54 interaction domain CFM90_22040 PF00285 Citrate synthase, C-terminal domain CFM90_22045 PF00330 Aconitase family (aconitate hydratase) CFM90_22045 PF00694 Aconitase C-terminal domain CFM90_22050 PF04303 PrpF protein CFM90_22090 PF00484 Carbonic anhydrase CFM90_22095 PF01841 Transglutaminase-like superfamily CFM90_22095 PF13559 Domain of unknown function (DUF4129) CFM90_22095 PF11992 Domain of unknown function (DUF3488) CFM90_22105 PF17863 AAA lid domain CFM90_22105 PF07726 ATPase family associated with various cellular activities (AAA) CFM90_22130 PF00593 TonB dependent receptor CFM90_22130 PF07715 TonB-dependent Receptor Plug Domain CFM90_22150 PF01638 HxlR-like helix-turn-helix CFM90_22160 PF07690 Major Facilitator Superfamily CFM90_22170 PF01381 Helix-turn-helix CFM90_22175 PF00083 Sugar (and other) transporter CFM90_22220 PF13193 AMP-binding enzyme C-terminal domain CFM90_22220 PF00501 AMP-binding enzyme CFM90_22225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CFM90_22225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFM90_22225 PF02770 Acyl-CoA dehydrogenase, middle domain CFM90_22230 PF00378 Enoyl-CoA hydratase/isomerase CFM90_22240 PF00106 short chain dehydrogenase CFM90_22245 PF01494 FAD binding domain CFM90_22260 PF00905 Penicillin binding protein transpeptidase domain CFM90_22270 PF00816 H-NS histone family CFM90_22290 PF01609 Transposase DDE domain CFM90_22290 PF05598 Transposase domain (DUF772) CFM90_22300 PF01161 Phosphatidylethanolamine-binding protein CFM90_22315 PF00654 Voltage gated chloride channel CFM90_22325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_22325 PF03466 LysR substrate binding domain CFM90_22330 PF00005 ABC transporter CFM90_22335 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_22335 PF00005 ABC transporter CFM90_22340 PF02653 Branched-chain amino acid transport system / permease component CFM90_22340 PF11862 Domain of unknown function (DUF3382) CFM90_22345 PF02653 Branched-chain amino acid transport system / permease component CFM90_22350 PF13458 Periplasmic binding protein CFM90_22355 PF08448 PAS fold CFM90_22355 PF08447 PAS fold CFM90_22355 PF00990 Diguanylate cyclase, GGDEF domain CFM90_22355 PF00563 EAL domain CFM90_22355 PF05231 MASE1 CFM90_22355 PF13426 PAS domain CFM90_22365 PF10086 YhfC intramembrane metalloprotease CFM90_22370 PF00158 Sigma-54 interaction domain CFM90_22370 PF00072 Response regulator receiver domain CFM90_22370 PF02954 Bacterial regulatory protein, Fis family CFM90_22375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_22375 PF00512 His Kinase A (phospho-acceptor) domain CFM90_22375 PF02743 Cache domain CFM90_22380 PF00083 Sugar (and other) transporter CFM90_22385 PF00483 Nucleotidyl transferase CFM90_22395 PF17762 HTH domain found in ParB protein CFM90_22395 PF02195 ParB-like nuclease domain CFM90_22400 PF13614 AAA domain CFM90_22405 PF01695 IstB-like ATP binding protein CFM90_22410 PF00665 Integrase core domain CFM90_22415 PF00313 'Cold-shock' DNA-binding domain CFM90_22425 PF00860 Permease family CFM90_22435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_22435 PF00512 His Kinase A (phospho-acceptor) domain CFM90_22460 PF04963 Sigma-54 factor, core binding domain CFM90_22460 PF00309 Sigma-54 factor, Activator interacting domain (AID) CFM90_22460 PF04552 Sigma-54, DNA binding domain CFM90_22470 PF02954 Bacterial regulatory protein, Fis family CFM90_22470 PF01590 GAF domain CFM90_22470 PF00158 Sigma-54 interaction domain CFM90_22475 PF00158 Sigma-54 interaction domain CFM90_22475 PF02954 Bacterial regulatory protein, Fis family CFM90_22475 PF00072 Response regulator receiver domain CFM90_22500 PF03144 Elongation factor Tu domain 2 CFM90_22500 PF16658 Class II release factor RF3, C-terminal domain CFM90_22500 PF00009 Elongation factor Tu GTP binding domain CFM90_22510 PF00550 Phosphopantetheine attachment site CFM90_22550 PF04542 Sigma-70 region 2 CFM90_22550 PF08281 Sigma-70, region 4 CFM90_22565 PF01739 CheR methyltransferase, SAM binding domain CFM90_22585 PF03929 PepSY-associated TM region CFM90_22610 PF00356 Bacterial regulatory proteins, lacI family CFM90_22615 PF01370 NAD dependent epimerase/dehydratase family CFM90_22620 PF02653 Branched-chain amino acid transport system / permease component CFM90_22625 PF00005 ABC transporter CFM90_22630 PF13407 Periplasmic binding protein domain CFM90_22635 PF04966 Carbohydrate-selective porin, OprB family CFM90_22670 PF01590 GAF domain CFM90_22670 PF00360 Phytochrome region CFM90_22670 PF00990 Diguanylate cyclase, GGDEF domain CFM90_22670 PF00563 EAL domain CFM90_22675 PF00072 Response regulator receiver domain CFM90_22675 PF00512 His Kinase A (phospho-acceptor) domain CFM90_22675 PF09456 RcsC Alpha-Beta-Loop (ABL) CFM90_22675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_22685 PF05662 Coiled stalk of trimeric autotransporter adhesin CFM90_22685 PF13018 Extended Signal Peptide of Type V secretion system CFM90_22685 PF05658 Head domain of trimeric autotransporter adhesin CFM90_22685 PF05662 Coiled stalk of trimeric autotransporter adhesin CFM90_22685 PF03895 YadA-like membrane anchor domain CFM90_22685 PF13018 Extended Signal Peptide of Type V secretion system CFM90_22685 PF03895 YadA-like membrane anchor domain CFM90_22685 PF05658 Head domain of trimeric autotransporter adhesin CFM90_22690 PF11922 Domain of unknown function (DUF3440) CFM90_22690 PF01507 Phosphoadenosine phosphosulfate reductase family CFM90_22700 PF02195 ParB-like nuclease domain CFM90_22705 PF00356 Bacterial regulatory proteins, lacI family CFM90_22710 PF08666 SAF domain CFM90_22710 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CFM90_22715 PF07690 Major Facilitator Superfamily CFM90_22720 PF03328 HpcH/HpaI aldolase/citrate lyase family CFM90_22725 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_22730 PF00171 Aldehyde dehydrogenase family CFM90_22790 PF02321 Outer membrane efflux protein CFM90_22795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_22800 PF00873 AcrB/AcrD/AcrF family CFM90_22810 PF07690 Major Facilitator Superfamily CFM90_22815 PF13609 Gram-negative porin CFM90_22835 PF03466 LysR substrate binding domain CFM90_22835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_22840 PF13458 Periplasmic binding protein CFM90_22845 PF00171 Aldehyde dehydrogenase family CFM90_22850 PF01266 FAD dependent oxidoreductase CFM90_22880 PF01053 Cys/Met metabolism PLP-dependent enzyme CFM90_22900 PF00199 Catalase CFM90_22900 PF06628 Catalase-related immune-responsive CFM90_22915 PF03472 Autoinducer binding domain CFM90_22915 PF00196 Bacterial regulatory proteins, luxR family CFM90_22920 PF00491 Arginase family CFM90_22925 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_22935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_22950 PF07690 Major Facilitator Superfamily CFM90_22970 PF00990 Diguanylate cyclase, GGDEF domain CFM90_22970 PF03707 Bacterial signalling protein N terminal repeat CFM90_22970 PF00563 EAL domain CFM90_22995 PF00155 Aminotransferase class I and II CFM90_23005 PF01609 Transposase DDE domain CFM90_23005 PF05598 Transposase domain (DUF772) CFM90_23020 PF00510 Cytochrome c oxidase subunit III CFM90_23030 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_23035 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CFM90_23050 PF00582 Universal stress protein family CFM90_23055 PF00920 Dehydratase family CFM90_23060 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFM90_23060 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFM90_23065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CFM90_23075 PF01380 SIS domain CFM90_23075 PF01418 Helix-turn-helix domain, rpiR family CFM90_23075 PF02685 Glucokinase CFM90_23080 PF05819 NolX protein CFM90_23085 PF00072 Response regulator receiver domain CFM90_23085 PF00486 Transcriptional regulatory protein, C terminal CFM90_23090 PF00512 His Kinase A (phospho-acceptor) domain CFM90_23090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_23090 PF08521 Two-component sensor kinase N-terminal CFM90_23095 PF13180 PDZ domain CFM90_23125 PF05594 Haemagluttinin repeat CFM90_23125 PF13332 Hemagglutinin repeat CFM90_23125 PF15526 Novel toxin 21 CFM90_23125 PF05860 haemagglutination activity domain CFM90_23125 PF04829 Pre-toxin domain with VENN motif CFM90_23140 PF13018 Extended Signal Peptide of Type V secretion system CFM90_23140 PF05594 Haemagluttinin repeat CFM90_23140 PF13332 Hemagglutinin repeat CFM90_23140 PF05860 haemagglutination activity domain CFM90_23145 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_23145 PF17287 POTRA domain CFM90_23145 PF08479 POTRA domain, ShlB-type CFM90_23150 PF13145 PPIC-type PPIASE domain CFM90_23165 PF07732 Multicopper oxidase CFM90_23165 PF07731 Multicopper oxidase CFM90_23170 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CFM90_23170 PF03171 2OG-Fe(II) oxygenase superfamily CFM90_23195 PF01694 Rhomboid family CFM90_23200 PF00072 Response regulator receiver domain CFM90_23200 PF00990 Diguanylate cyclase, GGDEF domain CFM90_23210 PF03706 Lysylphosphatidylglycerol synthase TM region CFM90_23210 PF09924 Uncharacterised conserved protein (DUF2156) CFM90_23225 PF01740 STAS domain CFM90_23225 PF00916 Sulfate permease family CFM90_23235 PF13309 HTH domain CFM90_23235 PF08348 YheO-like PAS domain CFM90_23240 PF00291 Pyridoxal-phosphate dependent enzyme CFM90_23250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_23250 PF03466 LysR substrate binding domain CFM90_23270 PF00990 Diguanylate cyclase, GGDEF domain CFM90_23270 PF00072 Response regulator receiver domain CFM90_23285 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_23290 PF00005 ABC transporter CFM90_23295 PF00392 Bacterial regulatory proteins, gntR family CFM90_23295 PF07702 UTRA domain CFM90_23300 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_23310 PF07732 Multicopper oxidase CFM90_23345 PF00999 Sodium/hydrogen exchanger family CFM90_23345 PF02254 TrkA-N domain CFM90_23350 PF03358 NADPH-dependent FMN reductase CFM90_23370 PF02543 Carbamoyltransferase N-terminus CFM90_23370 PF16861 Carbamoyltransferase C-terminus CFM90_23400 PF00561 alpha/beta hydrolase fold CFM90_23430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_23430 PF03466 LysR substrate binding domain CFM90_23460 PF00248 Aldo/keto reductase family CFM90_23470 PF03466 LysR substrate binding domain CFM90_23470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_23500 PF02687 FtsX-like permease family CFM90_23500 PF12704 MacB-like periplasmic core domain CFM90_23500 PF00005 ABC transporter CFM90_23505 PF00005 ABC transporter CFM90_23530 PF13737 Transposase DDE domain CFM90_23540 PF12697 Alpha/beta hydrolase family CFM90_23545 PF07690 Major Facilitator Superfamily CFM90_23565 PF05247 Flagellar transcriptional activator (FlhD) CFM90_23570 PF05280 Flagellar transcriptional activator (FlhC) CFM90_23575 PF01618 MotA/TolQ/ExbB proton channel family CFM90_23580 PF13677 Membrane MotB of proton-channel complex MotA/MotB CFM90_23580 PF00691 OmpA family CFM90_23585 PF00072 Response regulator receiver domain CFM90_23590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_23590 PF02895 Signal transducing histidine kinase, homodimeric domain CFM90_23590 PF09078 CheY binding CFM90_23590 PF01584 CheW-like domain CFM90_23590 PF01627 Hpt domain CFM90_23595 PF01584 CheW-like domain CFM90_23600 PF00672 HAMP domain CFM90_23600 PF02203 Tar ligand binding domain homologue CFM90_23600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_23605 PF03705 CheR methyltransferase, all-alpha domain CFM90_23605 PF01739 CheR methyltransferase, SAM binding domain CFM90_23610 PF03975 CheD chemotactic sensory transduction CFM90_23615 PF00072 Response regulator receiver domain CFM90_23615 PF01339 CheB methylesterase CFM90_23620 PF00072 Response regulator receiver domain CFM90_23625 PF04344 Chemotaxis phosphatase, CheZ CFM90_23630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFM90_23635 PF13609 Gram-negative porin CFM90_23640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CFM90_23640 PF08501 Shikimate dehydrogenase substrate binding domain CFM90_23645 PF01220 Dehydroquinase class II CFM90_23650 PF07690 Major Facilitator Superfamily CFM90_23655 PF00440 Bacterial regulatory proteins, tetR family CFM90_23655 PF17938 Tetracyclin repressor-like, C-terminal domain CFM90_23660 PF01312 FlhB HrpN YscU SpaS Family CFM90_23665 PF00771 FHIPEP family CFM90_23670 PF00448 SRP54-type protein, GTPase domain CFM90_23680 PF04539 Sigma-70 region 3 CFM90_23680 PF04542 Sigma-70 region 2 CFM90_23680 PF04545 Sigma-70, region 4 CFM90_23685 PF12706 Beta-lactamase superfamily domain CFM90_23705 PF02325 YGGT family CFM90_23715 PF09084 NMT1/THI5 like CFM90_23725 PF08274 PhnA Zinc-Ribbon CFM90_23725 PF03831 PhnA domain CFM90_23730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_23730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFM90_23745 PF01037 Lrp/AsnC ligand binding domain CFM90_23760 PF17287 POTRA domain CFM90_23760 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_23760 PF08479 POTRA domain, ShlB-type CFM90_23785 PF04829 Pre-toxin domain with VENN motif CFM90_23785 PF13332 Hemagglutinin repeat CFM90_23785 PF05860 haemagglutination activity domain CFM90_23785 PF13332 Hemagglutinin repeat CFM90_23785 PF05860 haemagglutination activity domain CFM90_23785 PF04829 Pre-toxin domain with VENN motif CFM90_23795 PF05573 NosL CFM90_23800 PF12679 ABC-2 family transporter protein CFM90_23805 PF00005 ABC transporter CFM90_23810 PF05048 Periplasmic copper-binding protein (NosD) CFM90_23815 PF12801 4Fe-4S binding domain CFM90_23815 PF04205 FMN-binding domain CFM90_23820 PF13473 Cupredoxin-like domain CFM90_23820 PF18764 Nitrous oxide reductase propeller repeat CFM90_23820 PF18793 Nitrous oxide reductase propeller repeat 2 CFM90_23835 PF01553 Acyltransferase CFM90_23840 PF00676 Dehydrogenase E1 component CFM90_23840 PF16870 2-oxoglutarate dehydrogenase C-terminal CFM90_23840 PF16078 2-oxoglutarate dehydrogenase N-terminus CFM90_23840 PF02779 Transketolase, pyrimidine binding domain CFM90_23845 PF00672 HAMP domain CFM90_23845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_23845 PF02203 Tar ligand binding domain homologue CFM90_23865 PF01609 Transposase DDE domain CFM90_23865 PF05598 Transposase domain (DUF772) CFM90_23870 PF01042 Endoribonuclease L-PSP CFM90_23885 PF01022 Bacterial regulatory protein, arsR family CFM90_23895 PF00106 short chain dehydrogenase CFM90_23900 PF01037 Lrp/AsnC ligand binding domain CFM90_23905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFM90_23910 PF01042 Endoribonuclease L-PSP CFM90_23955 PF01738 Dienelactone hydrolase family CFM90_23970 PF00005 ABC transporter CFM90_23975 PF00005 ABC transporter CFM90_23975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CFM90_23990 PF13458 Periplasmic binding protein CFM90_24010 PF03994 Domain of Unknown Function (DUF350) CFM90_24030 PF02675 S-adenosylmethionine decarboxylase CFM90_24035 PF07963 Prokaryotic N-terminal methylation motif CFM90_24035 PF00114 Pilin (bacterial filament) CFM90_24055 PF05567 Neisseria PilC beta-propeller domain CFM90_24060 PF14245 Type IV pilin PilA CFM90_24060 PF07963 Prokaryotic N-terminal methylation motif CFM90_24065 PF00356 Bacterial regulatory proteins, lacI family CFM90_24070 PF02378 Phosphotransferase system, EIIC CFM90_24070 PF00367 phosphotransferase system, EIIB CFM90_24075 PF00251 Glycosyl hydrolases family 32 N-terminal domain CFM90_24075 PF08244 Glycosyl hydrolases family 32 C terminal CFM90_24080 PF02264 LamB porin CFM90_24085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFM90_24085 PF00381 PTS HPr component phosphorylation site CFM90_24085 PF02896 PEP-utilising enzyme, TIM barrel domain CFM90_24085 PF00391 PEP-utilising enzyme, mobile domain CFM90_24085 PF05524 PEP-utilising enzyme, N-terminal CFM90_24100 PF10415 Fumarase C C-terminus CFM90_24100 PF00206 Lyase CFM90_24105 PF07690 Major Facilitator Superfamily CFM90_24120 PF00580 UvrD/REP helicase N-terminal domain CFM90_24120 PF13361 UvrD-like helicase C-terminal domain CFM90_24135 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CFM90_24140 PF05552 Conserved TM helix CFM90_24170 PF01925 Sulfite exporter TauE/SafE CFM90_24175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24175 PF03466 LysR substrate binding domain CFM90_24185 PF13193 AMP-binding enzyme C-terminal domain CFM90_24185 PF00501 AMP-binding enzyme CFM90_24190 PF01925 Sulfite exporter TauE/SafE CFM90_24195 PF02910 Fumarate reductase flavoprotein C-term CFM90_24195 PF00890 FAD binding domain CFM90_24215 PF02525 Flavodoxin-like fold CFM90_24220 PF03466 LysR substrate binding domain CFM90_24220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24225 PF07690 Major Facilitator Superfamily CFM90_24235 PF13657 HipA N-terminal domain CFM90_24235 PF07804 HipA-like C-terminal domain CFM90_24265 PF12833 Helix-turn-helix domain CFM90_24270 PF01042 Endoribonuclease L-PSP CFM90_24280 PF02558 Ketopantoate reductase PanE/ApbA CFM90_24280 PF08546 Ketopantoate reductase PanE/ApbA C terminal CFM90_24285 PF02322 Cytochrome bd terminal oxidase subunit II CFM90_24290 PF01654 Cytochrome bd terminal oxidase subunit I CFM90_24300 PF13406 Transglycosylase SLT domain CFM90_24335 PF03466 LysR substrate binding domain CFM90_24335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24345 PF03737 Aldolase/RraA CFM90_24345 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_24355 PF03737 Aldolase/RraA CFM90_24360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFM90_24365 PF00561 alpha/beta hydrolase fold CFM90_24380 PF00296 Luciferase-like monooxygenase CFM90_24395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_24395 PF08447 PAS fold CFM90_24400 PF07690 Major Facilitator Superfamily CFM90_24405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFM90_24405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFM90_24405 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_24405 PF18267 Rubredoxin NAD+ reductase C-terminal domain CFM90_24405 PF04324 BFD-like [2Fe-2S] binding domain CFM90_24410 PF13806 Rieske-like [2Fe-2S] domain CFM90_24415 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFM90_24415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFM90_24415 PF18267 Rubredoxin NAD+ reductase C-terminal domain CFM90_24415 PF04324 BFD-like [2Fe-2S] binding domain CFM90_24415 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFM90_24420 PF04324 BFD-like [2Fe-2S] binding domain CFM90_24420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFM90_24420 PF00384 Molybdopterin oxidoreductase CFM90_24420 PF01568 Molydopterin dinucleotide binding domain CFM90_24435 PF01554 MatE CFM90_24450 PF13396 Phospholipase_D-nuclease N-terminal CFM90_24450 PF13091 PLD-like domain CFM90_24460 PF02203 Tar ligand binding domain homologue CFM90_24460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_24460 PF00672 HAMP domain CFM90_24465 PF00990 Diguanylate cyclase, GGDEF domain CFM90_24465 PF03707 Bacterial signalling protein N terminal repeat CFM90_24465 PF13188 PAS domain CFM90_24465 PF00563 EAL domain CFM90_24470 PF01654 Cytochrome bd terminal oxidase subunit I CFM90_24475 PF02322 Cytochrome bd terminal oxidase subunit II CFM90_24490 PF00563 EAL domain CFM90_24490 PF00990 Diguanylate cyclase, GGDEF domain CFM90_24490 PF03707 Bacterial signalling protein N terminal repeat CFM90_24500 PF02321 Outer membrane efflux protein CFM90_24505 PF00873 AcrB/AcrD/AcrF family CFM90_24510 PF00873 AcrB/AcrD/AcrF family CFM90_24515 PF13533 Biotin-lipoyl like CFM90_24520 PF00486 Transcriptional regulatory protein, C terminal CFM90_24520 PF00072 Response regulator receiver domain CFM90_24525 PF00512 His Kinase A (phospho-acceptor) domain CFM90_24525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_24525 PF00672 HAMP domain CFM90_24535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CFM90_24540 PF00072 Response regulator receiver domain CFM90_24540 PF00196 Bacterial regulatory proteins, luxR family CFM90_24545 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFM90_24550 PF01081 KDPG and KHG aldolase CFM90_24555 PF02447 GntP family permease CFM90_24565 PF07969 Amidohydrolase family CFM90_24585 PF00529 HlyD membrane-fusion protein of T1SS CFM90_24590 PF00005 ABC transporter CFM90_24590 PF00664 ABC transporter transmembrane region CFM90_24590 PF03412 Peptidase C39 family CFM90_24620 PF00072 Response regulator receiver domain CFM90_24620 PF00989 PAS fold CFM90_24620 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_24620 PF01627 Hpt domain CFM90_24620 PF00512 His Kinase A (phospho-acceptor) domain CFM90_24620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_24645 PF04185 Phosphoesterase family CFM90_24650 PF03150 Di-haem cytochrome c peroxidase CFM90_24655 PF03471 Transporter associated domain CFM90_24655 PF03741 Integral membrane protein TerC family CFM90_24680 PF05199 GMC oxidoreductase CFM90_24705 PF00672 HAMP domain CFM90_24705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_24705 PF00512 His Kinase A (phospho-acceptor) domain CFM90_24710 PF00486 Transcriptional regulatory protein, C terminal CFM90_24710 PF00072 Response regulator receiver domain CFM90_24725 PF06906 Protein of unknown function (DUF1272) CFM90_24745 PF00563 EAL domain CFM90_24745 PF00990 Diguanylate cyclase, GGDEF domain CFM90_24745 PF03707 Bacterial signalling protein N terminal repeat CFM90_24755 PF03459 TOBE domain CFM90_24755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24760 PF01361 Tautomerase enzyme CFM90_24765 PF12697 Alpha/beta hydrolase family CFM90_24775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24775 PF03466 LysR substrate binding domain CFM90_24780 PF00005 ABC transporter CFM90_24780 PF08402 TOBE domain CFM90_24785 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_24790 PF04960 Glutaminase CFM90_24795 PF00196 Bacterial regulatory proteins, luxR family CFM90_24795 PF00072 Response regulator receiver domain CFM90_24800 PF00072 Response regulator receiver domain CFM90_24800 PF00196 Bacterial regulatory proteins, luxR family CFM90_24805 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_24810 PF04717 Type VI secretion system, phage-baseplate injector CFM90_24820 PF03527 RHS protein CFM90_24820 PF05593 RHS Repeat CFM90_24835 PF05076 Suppressor of fused protein (SUFU) CFM90_24850 PF01022 Bacterial regulatory protein, arsR family CFM90_24855 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFM90_24860 PF00230 Major intrinsic protein CFM90_24865 PF03466 LysR substrate binding domain CFM90_24865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24870 PF00107 Zinc-binding dehydrogenase CFM90_24870 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_24875 PF00106 short chain dehydrogenase CFM90_24880 PF12706 Beta-lactamase superfamily domain CFM90_24885 PF00440 Bacterial regulatory proteins, tetR family CFM90_24895 PF00106 short chain dehydrogenase CFM90_24920 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_24920 PF00107 Zinc-binding dehydrogenase CFM90_24930 PF03466 LysR substrate binding domain CFM90_24930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_24940 PF00698 Acyl transferase domain CFM90_24940 PF00107 Zinc-binding dehydrogenase CFM90_24940 PF14765 Polyketide synthase dehydratase CFM90_24940 PF00550 Phosphopantetheine attachment site CFM90_24940 PF00109 Beta-ketoacyl synthase, N-terminal domain CFM90_24940 PF02801 Beta-ketoacyl synthase, C-terminal domain CFM90_24940 PF08659 KR domain CFM90_24940 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_24940 PF16197 Ketoacyl-synthetase C-terminal extension CFM90_24950 PF01575 MaoC like domain CFM90_24955 PF01638 HxlR-like helix-turn-helix CFM90_24975 PF01212 Beta-eliminating lyase CFM90_24980 PF12833 Helix-turn-helix domain CFM90_24985 PF02321 Outer membrane efflux protein CFM90_24990 PF00873 AcrB/AcrD/AcrF family CFM90_24995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_25000 PF07859 alpha/beta hydrolase fold CFM90_25005 PF03466 LysR substrate binding domain CFM90_25005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_25015 PF07859 alpha/beta hydrolase fold CFM90_25020 PF02566 OsmC-like protein CFM90_25025 PF01047 MarR family CFM90_25030 PF00982 Glycosyltransferase family 20 CFM90_25035 PF02358 Trehalose-phosphatase CFM90_25045 PF16363 GDP-mannose 4,6 dehydratase CFM90_25055 PF00672 HAMP domain CFM90_25055 PF17200 Single Cache domain 2 CFM90_25055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_25065 PF03707 Bacterial signalling protein N terminal repeat CFM90_25065 PF00563 EAL domain CFM90_25065 PF00990 Diguanylate cyclase, GGDEF domain CFM90_25070 PF00196 Bacterial regulatory proteins, luxR family CFM90_25070 PF00072 Response regulator receiver domain CFM90_25110 PF13629 Pilus formation protein N terminal region CFM90_25110 PF04972 BON domain CFM90_25110 PF00263 Bacterial type II and III secretion system protein CFM90_25120 PF00437 Type II/IV secretion system protein CFM90_25150 PF00072 Response regulator receiver domain CFM90_25150 PF00158 Sigma-54 interaction domain CFM90_25150 PF02954 Bacterial regulatory protein, Fis family CFM90_25165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_25165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFM90_25215 PF00593 TonB dependent receptor CFM90_25215 PF07715 TonB-dependent Receptor Plug Domain CFM90_25220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFM90_25220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_25235 PF06314 Acetoacetate decarboxylase (ADC) CFM90_25240 PF00155 Aminotransferase class I and II CFM90_25240 PF00392 Bacterial regulatory proteins, gntR family CFM90_25245 PF00202 Aminotransferase class-III CFM90_25250 PF00171 Aldehyde dehydrogenase family CFM90_25260 PF00313 'Cold-shock' DNA-binding domain CFM90_25265 PF02705 K+ potassium transporter CFM90_25270 PF13188 PAS domain CFM90_25270 PF03707 Bacterial signalling protein N terminal repeat CFM90_25270 PF00563 EAL domain CFM90_25270 PF00990 Diguanylate cyclase, GGDEF domain CFM90_25275 PF02634 FdhD/NarQ family CFM90_25285 PF00384 Molybdopterin oxidoreductase CFM90_25290 PF07690 Major Facilitator Superfamily CFM90_25310 PF05598 Transposase domain (DUF772) CFM90_25310 PF01609 Transposase DDE domain CFM90_25315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_25315 PF00672 HAMP domain CFM90_25315 PF00512 His Kinase A (phospho-acceptor) domain CFM90_25320 PF00072 Response regulator receiver domain CFM90_25320 PF00486 Transcriptional regulatory protein, C terminal CFM90_25325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_25330 PF00873 AcrB/AcrD/AcrF family CFM90_25335 PF02321 Outer membrane efflux protein CFM90_25355 PF05114 Protein of unknown function (DUF692) CFM90_25370 PF10005 zinc-ribbon domain CFM90_25370 PF15887 Putative zinc-binding metallo-peptidase CFM90_25395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CFM90_25395 PF00672 HAMP domain CFM90_25395 PF02203 Tar ligand binding domain homologue CFM90_25440 PF02563 Polysaccharide biosynthesis/export protein CFM90_25440 PF10531 SLBB domain CFM90_25445 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFM90_25450 PF13614 AAA domain CFM90_25450 PF02706 Chain length determinant protein CFM90_25450 PF13807 G-rich domain on putative tyrosine kinase CFM90_25455 PF02350 UDP-N-acetylglucosamine 2-epimerase CFM90_25460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CFM90_25460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CFM90_25460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CFM90_25480 PF12464 Maltose acetyltransferase CFM90_25480 PF14602 Hexapeptide repeat of succinyl-transferase CFM90_25485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CFM90_25485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CFM90_25500 PF02397 Bacterial sugar transferase CFM90_25505 PF14602 Hexapeptide repeat of succinyl-transferase CFM90_25505 PF17836 PglD N-terminal domain CFM90_25505 PF00132 Bacterial transferase hexapeptide (six repeats) CFM90_25510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CFM90_25525 PF02719 Polysaccharide biosynthesis protein CFM90_25530 PF13737 Transposase DDE domain CFM90_25560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_25560 PF03466 LysR substrate binding domain CFM90_25565 PF00180 Isocitrate/isopropylmalate dehydrogenase CFM90_25570 PF00375 Sodium:dicarboxylate symporter family CFM90_25575 PF17755 UvrA DNA-binding domain CFM90_25575 PF00005 ABC transporter CFM90_25575 PF17760 UvrA interaction domain CFM90_25580 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFM90_25590 PF00034 Cytochrome c CFM90_25590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CFM90_25595 PF02630 SCO1/SenC CFM90_25610 PF00465 Iron-containing alcohol dehydrogenase CFM90_25615 PF07690 Major Facilitator Superfamily CFM90_25615 PF00083 Sugar (and other) transporter CFM90_25620 PF02581 Thiamine monophosphate synthase CFM90_25640 PF00196 Bacterial regulatory proteins, luxR family CFM90_25640 PF00072 Response regulator receiver domain CFM90_25645 PF07730 Histidine kinase CFM90_25645 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CFM90_25645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_25645 PF00672 HAMP domain CFM90_25650 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CFM90_25655 PF02665 Nitrate reductase gamma subunit CFM90_25660 PF02613 Nitrate reductase delta subunit CFM90_25665 PF14711 Respiratory nitrate reductase beta C-terminal CFM90_25665 PF13247 4Fe-4S dicluster domain CFM90_25670 PF14710 Respiratory nitrate reductase alpha N-terminal CFM90_25670 PF00384 Molybdopterin oxidoreductase CFM90_25670 PF01568 Molydopterin dinucleotide binding domain CFM90_25675 PF07690 Major Facilitator Superfamily CFM90_25680 PF07690 Major Facilitator Superfamily CFM90_25725 PF01381 Helix-turn-helix CFM90_25725 PF08671 Anti-repressor SinI CFM90_25730 PF00155 Aminotransferase class I and II CFM90_25735 PF01370 NAD dependent epimerase/dehydratase family CFM90_25740 PF00158 Sigma-54 interaction domain CFM90_25740 PF02954 Bacterial regulatory protein, Fis family CFM90_25745 PF01814 Hemerythrin HHE cation binding domain CFM90_25745 PF04405 Domain of Unknown function (DUF542) CFM90_25785 PF13609 Gram-negative porin CFM90_25790 PF02233 NAD(P) transhydrogenase beta subunit CFM90_25795 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CFM90_25800 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CFM90_25800 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CFM90_25805 PF00107 Zinc-binding dehydrogenase CFM90_25805 PF08240 Alcohol dehydrogenase GroES-like domain CFM90_25820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFM90_25820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFM90_25825 PF03737 Aldolase/RraA CFM90_25835 PF03466 LysR substrate binding domain CFM90_25835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFM90_25840 PF00364 Biotin-requiring enzyme CFM90_25845 PF02785 Biotin carboxylase C-terminal domain CFM90_25845 PF00289 Biotin carboxylase, N-terminal domain CFM90_25845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFM90_25850 PF02682 Carboxyltransferase domain, subdomain C and D CFM90_25855 PF02626 Carboxyltransferase domain, subdomain A and B CFM90_25865 PF03746 LamB/YcsF family CFM90_25870 PF00106 short chain dehydrogenase CFM90_25875 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_25880 PF00528 Binding-protein-dependent transport system inner membrane component CFM90_25885 PF00005 ABC transporter CFM90_25890 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFM90_25905 PF00873 AcrB/AcrD/AcrF family CFM90_25910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CFM90_25910 PF00529 HlyD membrane-fusion protein of T1SS CFM90_25950 PF00072 Response regulator receiver domain CFM90_25950 PF00486 Transcriptional regulatory protein, C terminal CFM90_25965 PF00011 Hsp20/alpha crystallin family CFM90_25970 PF00011 Hsp20/alpha crystallin family CFM90_25980 PF00012 Hsp70 protein CFM90_26010 PF00166 Chaperonin 10 Kd subunit CFM90_26015 PF00118 TCP-1/cpn60 chaperonin family CFM90_26025 PF03441 FAD binding domain of DNA photolyase CFM90_26025 PF00875 DNA photolyase CFM90_26035 PF05594 Haemagluttinin repeat CFM90_26035 PF13332 Hemagglutinin repeat CFM90_26035 PF05860 haemagglutination activity domain CFM90_26035 PF15526 Novel toxin 21 CFM90_26035 PF04829 Pre-toxin domain with VENN motif CFM90_26040 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CFM90_26040 PF17287 POTRA domain CFM90_26040 PF08479 POTRA domain, ShlB-type CFM90_26045 PF13145 PPIC-type PPIASE domain CFM90_26050 PF05598 Transposase domain (DUF772) CFM90_26050 PF01609 Transposase DDE domain CFM90_26065 PF07730 Histidine kinase CFM90_26065 PF00672 HAMP domain CFM90_26065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFM90_26065 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CFM90_26070 PF00196 Bacterial regulatory proteins, luxR family CFM90_26070 PF00072 Response regulator receiver domain CFM90_26075 PF03472 Autoinducer binding domain CFM90_26075 PF00196 Bacterial regulatory proteins, luxR family CFM90_26085 PF01464 Transglycosylase SLT domain CFM90_26100 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CFM90_26140 PF03743 Bacterial conjugation TrbI-like protein CFM90_26145 PF00437 Type II/IV secretion system protein CFM90_26155 PF02534 Type IV secretory system Conjugative DNA transfer CFM90_26190 PF01695 IstB-like ATP binding protein CFM90_26195 PF00665 Integrase core domain CFM90_26315 PF00665 Integrase core domain CFM90_26320 PF01695 IstB-like ATP binding protein CFM90_26515 PF02899 Phage integrase, N-terminal SAM-like domain CFM90_26515 PF00589 Phage integrase family CFM90_26560 PF13614 AAA domain CFM90_26600 PF03421 YopJ Serine/Threonine acetyltransferase CFM90_26605 PF01526 Tn3 transposase DDE domain CFM90_26605 PF13700 Domain of unknown function (DUF4158) CFM90_26610 PF00239 Resolvase, N terminal domain CFM90_26610 PF02796 Helix-turn-helix domain of resolvase