locus-tag class description AMJ96_CH00001 PF03618 Kinase/pyrophosphorylase AMJ96_CH00002 PF02545 Maf-like protein AMJ96_CH00003 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMJ96_CH00003 PF01488 Shikimate / quinate 5-dehydrogenase AMJ96_CH00003 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_CH00004 PF01121 Dephospho-CoA kinase AMJ96_CH00005 PF00929 Exonuclease AMJ96_CH00006 PF02556 Preprotein translocase subunit SecB AMJ96_CH00007 PF04186 FxsA cytoplasmic membrane protein AMJ96_CH00009 PF06725 3D domain AMJ96_CH00009 PF03562 MltA specific insert domain AMJ96_CH00012 PF00204 DNA gyrase B AMJ96_CH00012 PF00986 DNA gyrase B subunit, carboxyl terminus AMJ96_CH00012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00012 PF01751 Toprim domain AMJ96_CH00015 PF13409 Glutathione S-transferase, N-terminal domain AMJ96_CH00016 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH00020 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMJ96_CH00021 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH00022 PF00290 Tryptophan synthase alpha chain AMJ96_CH00023 PF01039 Carboxyl transferase domain AMJ96_CH00024 PF08245 Mur ligase middle domain AMJ96_CH00025 PF00085 Thioredoxin AMJ96_CH00026 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH00026 PF12705 PD-(D/E)XK nuclease superfamily AMJ96_CH00026 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH00027 PF12705 PD-(D/E)XK nuclease superfamily AMJ96_CH00028 PF12804 MobA-like NTP transferase domain AMJ96_CH00029 PF01636 Phosphotransferase enzyme family AMJ96_CH00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00030 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00031 PF05221 S-adenosyl-L-homocysteine hydrolase AMJ96_CH00031 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMJ96_CH00032 PF00381 PTS HPr component phosphorylation site AMJ96_CH00033 PF03830 PTS system sorbose subfamily IIB component AMJ96_CH00033 PF03610 PTS system fructose IIA component AMJ96_CH00035 PF13755 Sensor N-terminal transmembrane domain AMJ96_CH00035 PF13756 Stimulus-sensing domain AMJ96_CH00035 PF00672 HAMP domain AMJ96_CH00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00035 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00036 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00036 PF00072 Response regulator receiver domain AMJ96_CH00037 PF01293 Phosphoenolpyruvate carboxykinase AMJ96_CH00038 PF00472 RF-1 domain AMJ96_CH00039 PF13532 2OG-Fe(II) oxygenase superfamily AMJ96_CH00040 PF00485 Phosphoribulokinase / Uridine kinase family AMJ96_CH00041 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMJ96_CH00042 PF00977 Histidine biosynthesis protein AMJ96_CH00043 PF00977 Histidine biosynthesis protein AMJ96_CH00046 PF00117 Glutamine amidotransferase class-I AMJ96_CH00048 PF00475 Imidazoleglycerol-phosphate dehydratase AMJ96_CH00049 PF00227 Proteasome subunit AMJ96_CH00050 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH00050 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH00050 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH00052 PF00067 Cytochrome P450 AMJ96_CH00053 PF01274 Malate synthase AMJ96_CH00056 PF00072 Response regulator receiver domain AMJ96_CH00057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00057 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00058 PF00270 DEAD/DEAH box helicase AMJ96_CH00058 PF04408 Helicase associated domain (HA2) AMJ96_CH00058 PF00271 Helicase conserved C-terminal domain AMJ96_CH00058 PF08482 ATP-dependent helicase C-terminal AMJ96_CH00059 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_CH00068 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00068 PF00072 Response regulator receiver domain AMJ96_CH00070 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00071 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00072 PF00535 Glycosyl transferase family 2 AMJ96_CH00072 PF03552 Cellulose synthase AMJ96_CH00072 PF07238 PilZ domain AMJ96_CH00075 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH00076 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00078 PF01842 ACT domain AMJ96_CH00078 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH00078 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00079 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00079 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00082 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00082 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00083 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00083 PF17938 Tetracyclin repressor-like, C-terminal domain AMJ96_CH00085 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00086 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00087 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00087 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00088 PF00005 ABC transporter AMJ96_CH00088 PF17912 MalK OB fold domain AMJ96_CH00088 PF03459 TOBE domain AMJ96_CH00090 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH00090 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH00090 PF16350 FAD dependent oxidoreductase central domain AMJ96_CH00090 PF01266 FAD dependent oxidoreductase AMJ96_CH00091 PF08125 Mannitol dehydrogenase C-terminal domain AMJ96_CH00091 PF01232 Mannitol dehydrogenase Rossmann domain AMJ96_CH00092 PF02614 Glucuronate isomerase AMJ96_CH00093 PF04102 SlyX AMJ96_CH00094 PF00171 Aldehyde dehydrogenase family AMJ96_CH00095 PF00202 Aminotransferase class-III AMJ96_CH00099 PF00575 S1 RNA binding domain AMJ96_CH00100 PF02224 Cytidylate kinase AMJ96_CH00104 PF06912 Protein of unknown function (DUF1275) AMJ96_CH00107 PF03458 UPF0126 domain AMJ96_CH00109 PF07977 FabA-like domain AMJ96_CH00110 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH00110 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH00113 PF08468 Methyltransferase small domain N-terminal AMJ96_CH00113 PF05175 Methyltransferase small domain AMJ96_CH00114 PF00575 S1 RNA binding domain AMJ96_CH00114 PF00013 KH domain AMJ96_CH00114 PF03725 3' exoribonuclease family, domain 2 AMJ96_CH00114 PF01138 3' exoribonuclease family, domain 1 AMJ96_CH00114 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMJ96_CH00115 PF00312 Ribosomal protein S15 AMJ96_CH00116 PF00561 alpha/beta hydrolase fold AMJ96_CH00117 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMJ96_CH00117 PF09157 Pseudouridine synthase II TruB, C-terminal AMJ96_CH00117 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMJ96_CH00118 PF02033 Ribosome-binding factor A AMJ96_CH00119 PF04760 Translation initiation factor IF-2, N-terminal region AMJ96_CH00119 PF11987 Translation-initiation factor 2 AMJ96_CH00119 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00119 PF08364 Bacterial translation initiation factor IF-2 associated region AMJ96_CH00121 PF08529 NusA N-terminal domain AMJ96_CH00121 PF13184 NusA-like KH domain AMJ96_CH00121 PF00575 S1 RNA binding domain AMJ96_CH00122 PF17384 RimP C-terminal SH3 domain AMJ96_CH00122 PF02576 RimP N-terminal domain AMJ96_CH00124 PF05977 Transmembrane secretion effector AMJ96_CH00127 PF13662 Toprim domain AMJ96_CH00127 PF02132 RecR protein AMJ96_CH00128 PF03473 MOSC domain AMJ96_CH00129 PF02575 YbaB/EbfC DNA-binding family AMJ96_CH00130 PF12170 DNA polymerase III tau subunit V interacting with alpha AMJ96_CH00130 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMJ96_CH00130 PF12169 DNA polymerase III subunits gamma and tau domain III AMJ96_CH00132 PF01230 HIT domain AMJ96_CH00133 PF00293 NUDIX domain AMJ96_CH00133 PF09297 NADH pyrophosphatase zinc ribbon domain AMJ96_CH00134 PF13280 WYL domain AMJ96_CH00134 PF08279 HTH domain AMJ96_CH00137 PF00800 Prephenate dehydratase AMJ96_CH00137 PF01817 Chorismate mutase type II AMJ96_CH00138 PF02348 Cytidylyltransferase AMJ96_CH00139 PF00034 Cytochrome c AMJ96_CH00140 PF03547 Membrane transport protein AMJ96_CH00141 PF00294 pfkB family carbohydrate kinase AMJ96_CH00143 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00143 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH00145 PF00581 Rhodanese-like domain AMJ96_CH00145 PF00899 ThiF family AMJ96_CH00146 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH00147 PF01381 Helix-turn-helix AMJ96_CH00149 PF01556 DnaJ C terminal domain AMJ96_CH00149 PF00226 DnaJ domain AMJ96_CH00149 PF00684 DnaJ central domain AMJ96_CH00150 PF00012 Hsp70 protein AMJ96_CH00151 PF00912 Transglycosylase AMJ96_CH00151 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH00154 PF07687 Peptidase dimerisation domain AMJ96_CH00154 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00155 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00155 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH00155 PF13188 PAS domain AMJ96_CH00155 PF00563 EAL domain AMJ96_CH00158 PF00476 DNA polymerase family A AMJ96_CH00158 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMJ96_CH00158 PF01612 3'-5' exonuclease AMJ96_CH00158 PF01367 5'-3' exonuclease, C-terminal SAM fold AMJ96_CH00159 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMJ96_CH00159 PF17854 FtsK alpha domain AMJ96_CH00159 PF09397 Ftsk gamma domain AMJ96_CH00159 PF01580 FtsK/SpoIIIE family AMJ96_CH00160 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH00160 PF04229 GrpB protein AMJ96_CH00161 PF00625 Guanylate kinase AMJ96_CH00162 PF07969 Amidohydrolase family AMJ96_CH00163 PF06299 Protein of unknown function (DUF1045) AMJ96_CH00164 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00165 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00167 PF00005 ABC transporter AMJ96_CH00169 PF00005 ABC transporter AMJ96_CH00170 PF00005 ABC transporter AMJ96_CH00171 PF06007 Phosphonate metabolism protein PhnJ AMJ96_CH00172 PF05861 Bacterial phosphonate metabolism protein (PhnI) AMJ96_CH00173 PF05845 Bacterial phosphonate metabolism protein (PhnH) AMJ96_CH00174 PF06754 Phosphonate metabolism protein PhnG AMJ96_CH00175 PF07702 UTRA domain AMJ96_CH00175 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00176 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00177 PF01113 Dihydrodipicolinate reductase, N-terminus AMJ96_CH00177 PF05173 Dihydrodipicolinate reductase, C-terminus AMJ96_CH00178 PF00005 ABC transporter AMJ96_CH00178 PF00664 ABC transporter transmembrane region AMJ96_CH00179 PF02685 Glucokinase AMJ96_CH00180 PF02142 MGS-like domain AMJ96_CH00181 PF03411 Penicillin-insensitive murein endopeptidase AMJ96_CH00182 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00183 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00184 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_CH00184 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00185 PF00005 ABC transporter AMJ96_CH00185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00186 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00188 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMJ96_CH00188 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMJ96_CH00197 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJ96_CH00198 PF01048 Phosphorylase superfamily AMJ96_CH00199 PF01791 DeoC/LacD family aldolase AMJ96_CH00200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMJ96_CH00200 PF00591 Glycosyl transferase family, a/b domain AMJ96_CH00200 PF02885 Glycosyl transferase family, helical bundle domain AMJ96_CH00203 PF00962 Adenosine/AMP deaminase AMJ96_CH00204 PF01676 Metalloenzyme superfamily AMJ96_CH00211 PF04972 BON domain AMJ96_CH00211 PF13629 Pilus formation protein N terminal region AMJ96_CH00211 PF00263 Bacterial type II and III secretion system protein AMJ96_CH00214 PF00437 Type II/IV secretion system protein AMJ96_CH00217 PF01810 LysE type translocator AMJ96_CH00219 PF00883 Cytosol aminopeptidase family, catalytic domain AMJ96_CH00219 PF02789 Cytosol aminopeptidase family, N-terminal domain AMJ96_CH00221 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AMJ96_CH00221 PF00877 NlpC/P60 family AMJ96_CH00222 PF01425 Amidase AMJ96_CH00223 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_CH00223 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00224 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00226 PF03576 Peptidase family S58 AMJ96_CH00228 PF00202 Aminotransferase class-III AMJ96_CH00229 PF00551 Formyl transferase AMJ96_CH00230 PF01757 Acyltransferase family AMJ96_CH00232 PF00150 Cellulase (glycosyl hydrolase family 5) AMJ96_CH00235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH00236 PF00535 Glycosyl transferase family 2 AMJ96_CH00237 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMJ96_CH00239 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00240 PF00483 Nucleotidyl transferase AMJ96_CH00242 PF08666 SAF domain AMJ96_CH00242 PF03102 NeuB family AMJ96_CH00243 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH00243 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH00243 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH00244 PF07977 FabA-like domain AMJ96_CH00248 PF00501 AMP-binding enzyme AMJ96_CH00248 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00258 PF00679 Elongation factor G C-terminus AMJ96_CH00258 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00258 PF06421 GTP-binding protein LepA C-terminus AMJ96_CH00258 PF03144 Elongation factor Tu domain 2 AMJ96_CH00260 PF01381 Helix-turn-helix AMJ96_CH00260 PF07883 Cupin domain AMJ96_CH00263 PF00850 Histone deacetylase domain AMJ96_CH00264 PF02631 RecX family AMJ96_CH00265 PF00892 EamA-like transporter family AMJ96_CH00271 PF05198 Translation initiation factor IF-3, N-terminal domain AMJ96_CH00271 PF00707 Translation initiation factor IF-3, C-terminal domain AMJ96_CH00273 PF01632 Ribosomal protein L35 AMJ96_CH00274 PF00453 Ribosomal protein L20 AMJ96_CH00275 PF01409 tRNA synthetases class II core domain (F) AMJ96_CH00275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMJ96_CH00276 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMJ96_CH00276 PF03147 Ferredoxin-fold anticodon binding domain AMJ96_CH00276 PF01588 Putative tRNA binding domain AMJ96_CH00276 PF03484 tRNA synthetase B5 domain AMJ96_CH00276 PF03483 B3/4 domain AMJ96_CH00278 PF00248 Aldo/keto reductase family AMJ96_CH00279 PF03466 LysR substrate binding domain AMJ96_CH00279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00280 PF05974 Domain of unknown function (DUF892) AMJ96_CH00282 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH00284 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00284 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00289 PF13742 OB-fold nucleic acid binding domain AMJ96_CH00289 PF02601 Exonuclease VII, large subunit AMJ96_CH00290 PF02525 Flavodoxin-like fold AMJ96_CH00291 PF01047 MarR family AMJ96_CH00292 PF00892 EamA-like transporter family AMJ96_CH00293 PF02073 Thermophilic metalloprotease (M29) AMJ96_CH00294 PF14497 Glutathione S-transferase, C-terminal domain AMJ96_CH00294 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH00296 PF04073 Aminoacyl-tRNA editing domain AMJ96_CH00297 PF03960 ArsC family AMJ96_CH00299 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMJ96_CH00299 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH00300 PF00106 short chain dehydrogenase AMJ96_CH00301 PF00106 short chain dehydrogenase AMJ96_CH00303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00303 PF03466 LysR substrate binding domain AMJ96_CH00304 PF12833 Helix-turn-helix domain AMJ96_CH00305 PF01161 Phosphatidylethanolamine-binding protein AMJ96_CH00307 PF01872 RibD C-terminal domain AMJ96_CH00310 PF00958 GMP synthase C terminal domain AMJ96_CH00310 PF00117 Glutamine amidotransferase class-I AMJ96_CH00318 PF01189 16S rRNA methyltransferase RsmB/F AMJ96_CH00318 PF01029 NusB family AMJ96_CH00319 PF03330 Lytic transglycolase AMJ96_CH00321 PF08331 Domain of unknown function (DUF1730) AMJ96_CH00322 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH00322 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH00323 PF02673 Bacitracin resistance protein BacA AMJ96_CH00324 PF01850 PIN domain AMJ96_CH00329 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMJ96_CH00331 PF13649 Methyltransferase domain AMJ96_CH00333 PF02767 DNA polymerase III beta subunit, central domain AMJ96_CH00333 PF00712 DNA polymerase III beta subunit, N-terminal domain AMJ96_CH00333 PF02768 DNA polymerase III beta subunit, C-terminal domain AMJ96_CH00334 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH00335 PF02021 Uncharacterised protein family UPF0102 AMJ96_CH00337 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMJ96_CH00337 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMJ96_CH00338 PF01078 Magnesium chelatase, subunit ChlI AMJ96_CH00338 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMJ96_CH00340 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH00341 PF01810 LysE type translocator AMJ96_CH00342 PF00892 EamA-like transporter family AMJ96_CH00343 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH00345 PF00692 dUTPase AMJ96_CH00346 PF03144 Elongation factor Tu domain 2 AMJ96_CH00346 PF16658 Class II release factor RF3, C-terminal domain AMJ96_CH00346 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00347 PF00529 HlyD membrane-fusion protein of T1SS AMJ96_CH00348 PF00664 ABC transporter transmembrane region AMJ96_CH00348 PF00005 ABC transporter AMJ96_CH00352 PF07690 Major Facilitator Superfamily AMJ96_CH00356 PF04127 DNA / pantothenate metabolism flavoprotein AMJ96_CH00356 PF02441 Flavoprotein AMJ96_CH00358 PF03466 LysR substrate binding domain AMJ96_CH00358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00359 PF07690 Major Facilitator Superfamily AMJ96_CH00360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00361 PF17392 Urocanase C-terminal domain AMJ96_CH00361 PF17391 Urocanase N-terminal domain AMJ96_CH00361 PF01175 Urocanase Rossmann-like domain AMJ96_CH00364 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00364 PF07687 Peptidase dimerisation domain AMJ96_CH00365 PF01979 Amidohydrolase family AMJ96_CH00366 PF00221 Aromatic amino acid lyase AMJ96_CH00367 PF03109 ABC1 family AMJ96_CH00368 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH00369 PF06827 Zinc finger found in FPG and IleRS AMJ96_CH00369 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMJ96_CH00369 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMJ96_CH00370 PF00378 Enoyl-CoA hydratase/isomerase AMJ96_CH00371 PF01649 Ribosomal protein S20 AMJ96_CH00372 PF08299 Bacterial dnaA protein helix-turn-helix AMJ96_CH00372 PF11638 DnaA N-terminal domain AMJ96_CH00372 PF00308 Bacterial dnaA protein AMJ96_CH00374 PF04055 Radical SAM superfamily AMJ96_CH00374 PF06969 HemN C-terminal domain AMJ96_CH00375 PF01725 Ham1 family AMJ96_CH00377 PF01138 3' exoribonuclease family, domain 1 AMJ96_CH00377 PF03725 3' exoribonuclease family, domain 2 AMJ96_CH00378 PF01628 HrcA protein C terminal domain AMJ96_CH00379 PF01025 GrpE AMJ96_CH00380 PF01156 Inosine-uridine preferring nucleoside hydrolase AMJ96_CH00381 PF00011 Hsp20/alpha crystallin family AMJ96_CH00384 PF00561 alpha/beta hydrolase fold AMJ96_CH00386 PF02390 Putative methyltransferase AMJ96_CH00387 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMJ96_CH00387 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMJ96_CH00387 PF02772 S-adenosylmethionine synthetase, central domain AMJ96_CH00389 PF01381 Helix-turn-helix AMJ96_CH00390 PF00795 Carbon-nitrogen hydrolase AMJ96_CH00391 PF00571 CBS domain AMJ96_CH00391 PF03471 Transporter associated domain AMJ96_CH00392 PF02130 Uncharacterized protein family UPF0054 AMJ96_CH00393 PF02562 PhoH-like protein AMJ96_CH00394 PF04055 Radical SAM superfamily AMJ96_CH00394 PF00919 Uncharacterized protein family UPF0004 AMJ96_CH00394 PF01938 TRAM domain AMJ96_CH00396 PF01475 Ferric uptake regulator family AMJ96_CH00398 PF00814 Glycoprotease family AMJ96_CH00399 PF01106 NifU-like domain AMJ96_CH00401 PF00579 tRNA synthetases class I (W and Y) AMJ96_CH00404 PF03023 Lipid II flippase MurJ AMJ96_CH00405 PF08335 GlnD PII-uridylyltransferase AMJ96_CH00405 PF01909 Nucleotidyltransferase domain AMJ96_CH00405 PF01842 ACT domain AMJ96_CH00405 PF01966 HD domain AMJ96_CH00407 PF01624 MutS domain I AMJ96_CH00407 PF05188 MutS domain II AMJ96_CH00407 PF00488 MutS domain V AMJ96_CH00407 PF05190 MutS family domain IV AMJ96_CH00407 PF05192 MutS domain III AMJ96_CH00408 PF01515 Phosphate acetyl/butaryl transferase AMJ96_CH00408 PF03949 Malic enzyme, NAD binding domain AMJ96_CH00408 PF00390 Malic enzyme, N-terminal domain AMJ96_CH00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00410 PF00672 HAMP domain AMJ96_CH00410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMJ96_CH00410 PF00072 Response regulator receiver domain AMJ96_CH00410 PF01627 Hpt domain AMJ96_CH00410 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00411 PF01252 Signal peptidase (SPase) II AMJ96_CH00412 PF00588 SpoU rRNA Methylase family AMJ96_CH00418 PF00216 Bacterial DNA-binding protein AMJ96_CH00419 PF01343 Peptidase family S49 AMJ96_CH00419 PF06965 Na+/H+ antiporter 1 AMJ96_CH00421 PF03968 OstA-like protein AMJ96_CH00422 PF00005 ABC transporter AMJ96_CH00423 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMJ96_CH00423 PF04963 Sigma-54 factor, core binding domain AMJ96_CH00423 PF04552 Sigma-54, DNA binding domain AMJ96_CH00424 PF00892 EamA-like transporter family AMJ96_CH00425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMJ96_CH00425 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMJ96_CH00426 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_CH00427 PF00672 HAMP domain AMJ96_CH00427 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00428 PF00294 pfkB family carbohydrate kinase AMJ96_CH00430 PF00672 HAMP domain AMJ96_CH00430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00431 PF01327 Polypeptide deformylase AMJ96_CH00433 PF01850 PIN domain AMJ96_CH00434 PF00551 Formyl transferase AMJ96_CH00434 PF02911 Formyl transferase, C-terminal domain AMJ96_CH00435 PF01416 tRNA pseudouridine synthase AMJ96_CH00437 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00437 PF07687 Peptidase dimerisation domain AMJ96_CH00438 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH00438 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMJ96_CH00438 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH00442 PF02805 Metal binding domain of Ada AMJ96_CH00442 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH00442 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMJ96_CH00442 PF12833 Helix-turn-helix domain AMJ96_CH00444 PF01070 FMN-dependent dehydrogenase AMJ96_CH00447 PF00696 Amino acid kinase family AMJ96_CH00448 PF10668 Phage terminase small subunit AMJ96_CH00450 PF02469 Fasciclin domain AMJ96_CH00451 PF01926 50S ribosome-binding GTPase AMJ96_CH00452 PF02096 60Kd inner membrane protein AMJ96_CH00452 PF14849 YidC periplasmic domain AMJ96_CH00453 PF00825 Ribonuclease P AMJ96_CH00454 PF00468 Ribosomal protein L34 AMJ96_CH00456 PF00672 HAMP domain AMJ96_CH00456 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00457 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00457 PF00989 PAS fold AMJ96_CH00457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00466 PF00398 Ribosomal RNA adenine dimethylase AMJ96_CH00467 PF00248 Aldo/keto reductase family AMJ96_CH00469 PF01266 FAD dependent oxidoreductase AMJ96_CH00470 PF05544 Proline racemase AMJ96_CH00474 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00475 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH00478 PF13188 PAS domain AMJ96_CH00478 PF00563 EAL domain AMJ96_CH00478 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH00478 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00479 PF00107 Zinc-binding dehydrogenase AMJ96_CH00479 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00481 PF05067 Manganese containing catalase AMJ96_CH00484 PF00480 ROK family AMJ96_CH00485 PF13407 Periplasmic binding protein domain AMJ96_CH00486 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH00487 PF00005 ABC transporter AMJ96_CH00488 PF00485 Phosphoribulokinase / Uridine kinase family AMJ96_CH00489 PF01979 Amidohydrolase family AMJ96_CH00490 PF17151 Periplasmic sensor domain AMJ96_CH00490 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00492 PF08361 MAATS-type transcriptional repressor, C-terminal region AMJ96_CH00492 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00493 PF00156 Phosphoribosyl transferase domain AMJ96_CH00494 PF00294 pfkB family carbohydrate kinase AMJ96_CH00495 PF00982 Glycosyltransferase family 20 AMJ96_CH00496 PF00342 Phosphoglucose isomerase AMJ96_CH00497 PF00501 AMP-binding enzyme AMJ96_CH00497 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00501 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00502 PF00005 ABC transporter AMJ96_CH00503 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00504 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH00506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00506 PF03466 LysR substrate binding domain AMJ96_CH00507 PF03932 CutC family AMJ96_CH00508 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00508 PF00107 Zinc-binding dehydrogenase AMJ96_CH00509 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH00510 PF00005 ABC transporter AMJ96_CH00512 PF05025 RbsD / FucU transport protein family AMJ96_CH00513 PF00248 Aldo/keto reductase family AMJ96_CH00514 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AMJ96_CH00514 PF08666 SAF domain AMJ96_CH00515 PF07729 FCD domain AMJ96_CH00515 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00516 PF06472 ABC transporter transmembrane region 2 AMJ96_CH00516 PF00005 ABC transporter AMJ96_CH00517 PF07690 Major Facilitator Superfamily AMJ96_CH00519 PF01757 Acyltransferase family AMJ96_CH00523 PF03976 Polyphosphate kinase 2 (PPK2) AMJ96_CH00524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00524 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00524 PF16736 Single Cache-like AMJ96_CH00524 PF00989 PAS fold AMJ96_CH00525 PF12849 PBP superfamily domain AMJ96_CH00526 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00527 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00528 PF00005 ABC transporter AMJ96_CH00529 PF01895 PhoU domain AMJ96_CH00530 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00530 PF00072 Response regulator receiver domain AMJ96_CH00533 PF00202 Aminotransferase class-III AMJ96_CH00534 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJ96_CH00534 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJ96_CH00535 PF01430 Hsp33 protein AMJ96_CH00536 PF04379 ApaG domain AMJ96_CH00537 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH00538 PF00692 dUTPase AMJ96_CH00542 PF00873 AcrB/AcrD/AcrF family AMJ96_CH00543 PF00106 short chain dehydrogenase AMJ96_CH00546 PF00672 HAMP domain AMJ96_CH00546 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00548 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH00551 PF00717 Peptidase S24-like AMJ96_CH00551 PF01726 LexA DNA binding domain AMJ96_CH00552 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00552 PF00072 Response regulator receiver domain AMJ96_CH00555 PF01180 Dihydroorotate dehydrogenase AMJ96_CH00556 PF01554 MatE AMJ96_CH00562 PF02627 Carboxymuconolactone decarboxylase family AMJ96_CH00563 PF02082 Transcriptional regulator AMJ96_CH00565 PF08494 DEAD/H associated AMJ96_CH00565 PF00270 DEAD/DEAH box helicase AMJ96_CH00565 PF00271 Helicase conserved C-terminal domain AMJ96_CH00569 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00569 PF08360 QacR-like protein, C-terminal region AMJ96_CH00572 PF01925 Sulfite exporter TauE/SafE AMJ96_CH00575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00575 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMJ96_CH00575 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH00575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_CH00576 PF02803 Thiolase, C-terminal domain AMJ96_CH00576 PF00108 Thiolase, N-terminal domain AMJ96_CH00577 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00577 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_CH00577 PF00378 Enoyl-CoA hydratase/isomerase AMJ96_CH00578 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH00584 PF01627 Hpt domain AMJ96_CH00584 PF00072 Response regulator receiver domain AMJ96_CH00584 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00584 PF00672 HAMP domain AMJ96_CH00585 PF01741 Large-conductance mechanosensitive channel, MscL AMJ96_CH00587 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00588 PF08448 PAS fold AMJ96_CH00588 PF08447 PAS fold AMJ96_CH00588 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00588 PF00563 EAL domain AMJ96_CH00590 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH00590 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMJ96_CH00591 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH00591 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH00597 PF00589 Phage integrase family AMJ96_CH00615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJ96_CH00618 PF06793 Uncharacterised protein family (UPF0262) AMJ96_CH00619 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJ96_CH00620 PF01176 Translation initiation factor 1A / IF-1 AMJ96_CH00621 PF02545 Maf-like protein AMJ96_CH00622 PF03884 DNA gyrase inhibitor YacG AMJ96_CH00625 PF06965 Na+/H+ antiporter 1 AMJ96_CH00627 PF00797 N-acetyltransferase AMJ96_CH00632 PF05114 Protein of unknown function (DUF692) AMJ96_CH00635 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00635 PF00107 Zinc-binding dehydrogenase AMJ96_CH00637 PF03600 Citrate transporter AMJ96_CH00640 PF01042 Endoribonuclease L-PSP AMJ96_CH00641 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH00642 PF00005 ABC transporter AMJ96_CH00642 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00643 PF00005 ABC transporter AMJ96_CH00643 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00644 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH00645 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00646 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00647 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00648 PF07729 FCD domain AMJ96_CH00648 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00649 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00650 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00651 PF00005 ABC transporter AMJ96_CH00652 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH00654 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_CH00655 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH00655 PF01068 ATP dependent DNA ligase domain AMJ96_CH00655 PF13298 DNA polymerase Ligase (LigD) AMJ96_CH00656 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_CH00662 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00663 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00663 PF01590 GAF domain AMJ96_CH00663 PF08446 PAS fold AMJ96_CH00663 PF00360 Phytochrome region AMJ96_CH00663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00664 PF00072 Response regulator receiver domain AMJ96_CH00665 PF00360 Phytochrome region AMJ96_CH00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00665 PF01590 GAF domain AMJ96_CH00665 PF08446 PAS fold AMJ96_CH00665 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00667 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00667 PF03472 Autoinducer binding domain AMJ96_CH00670 PF07549 SecD/SecF GG Motif AMJ96_CH00670 PF02355 Protein export membrane protein AMJ96_CH00672 PF02254 TrkA-N domain AMJ96_CH00672 PF00999 Sodium/hydrogen exchanger family AMJ96_CH00674 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJ96_CH00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00678 PF02895 Signal transducing histidine kinase, homodimeric domain AMJ96_CH00678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00678 PF01584 CheW-like domain AMJ96_CH00678 PF01627 Hpt domain AMJ96_CH00679 PF01584 CheW-like domain AMJ96_CH00680 PF01739 CheR methyltransferase, SAM binding domain AMJ96_CH00680 PF03705 CheR methyltransferase, all-alpha domain AMJ96_CH00681 PF00072 Response regulator receiver domain AMJ96_CH00681 PF01339 CheB methylesterase AMJ96_CH00682 PF00072 Response regulator receiver domain AMJ96_CH00683 PF03975 CheD chemotactic sensory transduction AMJ96_CH00685 PF01514 Secretory protein of YscJ/FliF family AMJ96_CH00685 PF08345 Flagellar M-ring protein C-terminal AMJ96_CH00686 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00686 PF03472 Autoinducer binding domain AMJ96_CH00689 PF01312 FlhB HrpN YscU SpaS Family AMJ96_CH00691 PF14842 FliG N-terminal domain AMJ96_CH00691 PF01706 FliG C-terminal domain AMJ96_CH00691 PF14841 FliG middle domain AMJ96_CH00692 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMJ96_CH00693 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMJ96_CH00694 PF01618 MotA/TolQ/ExbB proton channel family AMJ96_CH00695 PF00460 Flagella basal body rod protein AMJ96_CH00695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00696 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH00696 PF18269 T3SS EscN ATPase C-terminal domain AMJ96_CH00698 PF00460 Flagella basal body rod protein AMJ96_CH00699 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00700 PF02049 Flagellar hook-basal body complex protein FliE AMJ96_CH00701 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00701 PF00460 Flagella basal body rod protein AMJ96_CH00702 PF13144 Chaperone for flagella basal body P-ring formation AMJ96_CH00703 PF02119 Flagellar P-ring protein AMJ96_CH00705 PF02107 Flagellar L-ring protein AMJ96_CH00707 PF00813 FliP family AMJ96_CH00709 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH00711 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00711 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00712 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00712 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00713 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00713 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00714 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00714 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00716 PF00691 OmpA family AMJ96_CH00716 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMJ96_CH00718 PF02120 Flagellar hook-length control protein FliK AMJ96_CH00720 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00721 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00721 PF07559 Flagellar basal body protein FlaE AMJ96_CH00721 PF00460 Flagella basal body rod protein AMJ96_CH00722 PF00460 Flagella basal body rod protein AMJ96_CH00722 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00725 PF07378 Flagellar protein FlbT AMJ96_CH00727 PF01313 Bacterial export proteins, family 3 AMJ96_CH00728 PF00771 FHIPEP family AMJ96_CH00729 PF01311 Bacterial export proteins, family 1 AMJ96_CH00734 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMJ96_CH00736 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMJ96_CH00736 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMJ96_CH00737 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00738 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH00739 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00740 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00741 PF00128 Alpha amylase, catalytic domain AMJ96_CH00742 PF00005 ABC transporter AMJ96_CH00742 PF17912 MalK OB fold domain AMJ96_CH00742 PF03459 TOBE domain AMJ96_CH00744 PF00920 Dehydratase family AMJ96_CH00745 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMJ96_CH00746 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMJ96_CH00746 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMJ96_CH00747 PF01266 FAD dependent oxidoreductase AMJ96_CH00748 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH00748 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH00751 PF00672 HAMP domain AMJ96_CH00751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00752 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00752 PF00672 HAMP domain AMJ96_CH00756 PF00463 Isocitrate lyase family AMJ96_CH00757 PF06114 IrrE N-terminal-like domain AMJ96_CH00757 PF09856 Predicted transcriptional regulator (DUF2083) AMJ96_CH00757 PF01381 Helix-turn-helix AMJ96_CH00758 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH00759 PF08402 TOBE domain AMJ96_CH00759 PF00005 ABC transporter AMJ96_CH00760 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00761 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00763 PF00501 AMP-binding enzyme AMJ96_CH00763 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00765 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00765 PF13426 PAS domain AMJ96_CH00765 PF13188 PAS domain AMJ96_CH00765 PF00989 PAS fold AMJ96_CH00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00768 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMJ96_CH00768 PF08548 Peptidase M10 serralysin C terminal AMJ96_CH00773 PF00171 Aldehyde dehydrogenase family AMJ96_CH00774 PF02082 Transcriptional regulator AMJ96_CH00775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00776 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00777 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00777 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_CH00778 PF00005 ABC transporter AMJ96_CH00778 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00779 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00779 PF00005 ABC transporter AMJ96_CH00781 PF01266 FAD dependent oxidoreductase AMJ96_CH00782 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMJ96_CH00783 PF00195 Chalcone and stilbene synthases, N-terminal domain AMJ96_CH00783 PF02797 Chalcone and stilbene synthases, C-terminal domain AMJ96_CH00785 PF04542 Sigma-70 region 2 AMJ96_CH00785 PF08281 Sigma-70, region 4 AMJ96_CH00787 PF00535 Glycosyl transferase family 2 AMJ96_CH00788 PF00483 Nucleotidyl transferase AMJ96_CH00790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH00792 PF00005 ABC transporter AMJ96_CH00792 PF14524 Wzt C-terminal domain AMJ96_CH00793 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00794 PF00483 Nucleotidyl transferase AMJ96_CH00795 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00796 PF06463 Molybdenum Cofactor Synthesis C AMJ96_CH00796 PF04055 Radical SAM superfamily AMJ96_CH00797 PF03102 NeuB family AMJ96_CH00797 PF08666 SAF domain AMJ96_CH00798 PF02348 Cytidylyltransferase AMJ96_CH00801 PF02585 GlcNAc-PI de-N-acetylase AMJ96_CH00804 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH00807 PF03407 Nucleotide-diphospho-sugar transferase AMJ96_CH00808 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00809 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH00810 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00811 PF00891 O-methyltransferase domain AMJ96_CH00813 PF02541 Ppx/GppA phosphatase family AMJ96_CH00814 PF01728 FtsJ-like methyltransferase AMJ96_CH00816 PF07690 Major Facilitator Superfamily AMJ96_CH00818 PF00571 CBS domain AMJ96_CH00818 PF00478 IMP dehydrogenase / GMP reductase domain AMJ96_CH00822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00822 PF03466 LysR substrate binding domain AMJ96_CH00825 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMJ96_CH00826 PF04452 RNA methyltransferase AMJ96_CH00827 PF01384 Phosphate transporter family AMJ96_CH00829 PF03466 LysR substrate binding domain AMJ96_CH00829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00830 PF01565 FAD binding domain AMJ96_CH00830 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH00831 PF01565 FAD binding domain AMJ96_CH00832 PF02754 Cysteine-rich domain AMJ96_CH00832 PF13183 4Fe-4S dicluster domain AMJ96_CH00835 PF17969 L,D-transpeptidase C-terminal domain AMJ96_CH00835 PF01476 LysM domain AMJ96_CH00835 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH00836 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH00836 PF17969 L,D-transpeptidase C-terminal domain AMJ96_CH00837 PF03352 Methyladenine glycosylase AMJ96_CH00840 PF00248 Aldo/keto reductase family AMJ96_CH00844 PF03129 Anticodon binding domain AMJ96_CH00844 PF13393 Histidyl-tRNA synthetase AMJ96_CH00845 PF13393 Histidyl-tRNA synthetase AMJ96_CH00846 PF01634 ATP phosphoribosyltransferase AMJ96_CH00847 PF07681 DoxX AMJ96_CH00848 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH00848 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH00850 PF00118 TCP-1/cpn60 chaperonin family AMJ96_CH00851 PF00166 Chaperonin 10 Kd subunit AMJ96_CH00853 PF01687 Riboflavin kinase AMJ96_CH00853 PF06574 FAD synthetase AMJ96_CH00854 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH00854 PF08264 Anticodon-binding domain of tRNA AMJ96_CH00856 PF14437 MafB19-like deaminase AMJ96_CH00857 PF00849 RNA pseudouridylate synthase AMJ96_CH00857 PF01479 S4 domain AMJ96_CH00859 PF01734 Patatin-like phospholipase AMJ96_CH00860 PF01878 EVE domain AMJ96_CH00862 PF02254 TrkA-N domain AMJ96_CH00862 PF00999 Sodium/hydrogen exchanger family AMJ96_CH00863 PF01523 Putative modulator of DNA gyrase AMJ96_CH00864 PF00459 Inositol monophosphatase family AMJ96_CH00866 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMJ96_CH00868 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMJ96_CH00870 PF08676 MutL C terminal dimerisation domain AMJ96_CH00870 PF01119 DNA mismatch repair protein, C-terminal domain AMJ96_CH00871 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00871 PF00072 Response regulator receiver domain AMJ96_CH00872 PF13188 PAS domain AMJ96_CH00872 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH00872 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00872 PF00563 EAL domain AMJ96_CH00874 PF08450 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH00875 PF01081 KDPG and KHG aldolase AMJ96_CH00876 PF05035 2-keto-3-deoxy-galactonokinase AMJ96_CH00878 PF01614 Bacterial transcriptional regulator AMJ96_CH00878 PF09339 IclR helix-turn-helix domain AMJ96_CH00879 PF03472 Autoinducer binding domain AMJ96_CH00879 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00880 PF01883 Iron-sulfur cluster assembly protein AMJ96_CH00880 PF10609 NUBPL iron-transfer P-loop NTPase AMJ96_CH00881 PF01544 CorA-like Mg2+ transporter protein AMJ96_CH00882 PF02705 K+ potassium transporter AMJ96_CH00884 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter AMJ96_CH00885 PF00119 ATP synthase A chain AMJ96_CH00886 PF00137 ATP synthase subunit C AMJ96_CH00887 PF00430 ATP synthase B/B' CF(0) AMJ96_CH00888 PF00430 ATP synthase B/B' CF(0) AMJ96_CH00889 PF01351 Ribonuclease HII AMJ96_CH00893 PF00994 Probable molybdopterin binding domain AMJ96_CH00894 PF00288 GHMP kinases N terminal domain AMJ96_CH00894 PF08544 GHMP kinases C terminal AMJ96_CH00896 PF00348 Polyprenyl synthetase AMJ96_CH00899 PF01566 Natural resistance-associated macrophage protein AMJ96_CH00900 PF06965 Na+/H+ antiporter 1 AMJ96_CH00900 PF01343 Peptidase family S49 AMJ96_CH00902 PF02091 Glycyl-tRNA synthetase alpha subunit AMJ96_CH00903 PF01202 Shikimate kinase AMJ96_CH00904 PF04011 LemA family AMJ96_CH00905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJ96_CH00907 PF02843 Phosphoribosylglycinamide synthetase, C domain AMJ96_CH00907 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMJ96_CH00907 PF02844 Phosphoribosylglycinamide synthetase, N domain AMJ96_CH00909 PF00672 HAMP domain AMJ96_CH00909 PF17200 Single Cache domain 2 AMJ96_CH00909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00910 PF04463 Protein of unknown function (DUF523) AMJ96_CH00911 PF05746 DALR anticodon binding domain AMJ96_CH00911 PF02092 Glycyl-tRNA synthetase beta subunit AMJ96_CH00912 PF09371 Tex-like protein N-terminal domain AMJ96_CH00912 PF00575 S1 RNA binding domain AMJ96_CH00912 PF16921 Tex protein YqgF-like domain AMJ96_CH00912 PF17674 HHH domain AMJ96_CH00914 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00916 PF01040 UbiA prenyltransferase family AMJ96_CH00919 PF01565 FAD binding domain AMJ96_CH00919 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH00920 PF03481 Putative GTP-binding controlling metal-binding AMJ96_CH00920 PF01300 Telomere recombination AMJ96_CH00922 PF00355 Rieske [2Fe-2S] domain AMJ96_CH00922 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMJ96_CH00923 PF07886 BA14K-like protein AMJ96_CH00926 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_CH00926 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH00926 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00926 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMJ96_CH00928 PF12706 Beta-lactamase superfamily domain AMJ96_CH00929 PF00106 short chain dehydrogenase AMJ96_CH00930 PF01638 HxlR-like helix-turn-helix AMJ96_CH00931 PF05958 tRNA (Uracil-5-)-methyltransferase AMJ96_CH00932 PF01728 FtsJ-like methyltransferase AMJ96_CH00932 PF01479 S4 domain AMJ96_CH00933 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00933 PF02203 Tar ligand binding domain homologue AMJ96_CH00933 PF00672 HAMP domain AMJ96_CH00934 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH00934 PF02780 Transketolase, C-terminal domain AMJ96_CH00934 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMJ96_CH00936 PF02678 Pirin AMJ96_CH00936 PF05726 Pirin C-terminal cupin domain AMJ96_CH00938 PF02609 Exonuclease VII small subunit AMJ96_CH00939 PF00850 Histone deacetylase domain AMJ96_CH00941 PF07729 FCD domain AMJ96_CH00941 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00943 PF00501 AMP-binding enzyme AMJ96_CH00943 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00945 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00946 PF06339 Ectoine synthase AMJ96_CH00947 PF03466 LysR substrate binding domain AMJ96_CH00947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00948 PF01757 Acyltransferase family AMJ96_CH00949 PF02632 BioY family AMJ96_CH00950 PF02361 Cobalt transport protein AMJ96_CH00951 PF00005 ABC transporter AMJ96_CH00952 PF06224 Winged helix DNA-binding domain AMJ96_CH00953 PF00925 GTP cyclohydrolase II AMJ96_CH00953 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMJ96_CH00954 PF01264 Chorismate synthase AMJ96_CH00958 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00960 PF00684 DnaJ central domain AMJ96_CH00960 PF01556 DnaJ C terminal domain AMJ96_CH00960 PF00226 DnaJ domain AMJ96_CH00962 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMJ96_CH00962 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH00964 PF07943 Penicillin-binding protein 5, C-terminal domain AMJ96_CH00964 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH00966 PF01384 Phosphate transporter family AMJ96_CH00967 PF01865 Protein of unknown function DUF47 AMJ96_CH00969 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00970 PF01523 Putative modulator of DNA gyrase AMJ96_CH00972 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_CH00972 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMJ96_CH00973 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_CH00974 PF01040 UbiA prenyltransferase family AMJ96_CH00976 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMJ96_CH00977 PF00510 Cytochrome c oxidase subunit III AMJ96_CH00978 PF02660 Glycerol-3-phosphate acyltransferase AMJ96_CH00981 PF02104 SURF1 family AMJ96_CH00982 PF02401 LytB protein AMJ96_CH00983 PF01636 Phosphotransferase enzyme family AMJ96_CH00984 PF00075 RNase H AMJ96_CH00986 PF15887 Putative zinc-binding metallo-peptidase AMJ96_CH00986 PF10005 zinc-ribbon domain AMJ96_CH00988 PF02622 Uncharacterized ACR, COG1678 AMJ96_CH00990 PF08534 Redoxin AMJ96_CH00990 PF00462 Glutaredoxin AMJ96_CH00992 PF00005 ABC transporter AMJ96_CH00993 PF00950 ABC 3 transport family AMJ96_CH00994 PF01297 Zinc-uptake complex component A periplasmic AMJ96_CH00997 PF00563 EAL domain AMJ96_CH00997 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH00997 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH00998 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH00999 PF00675 Insulinase (Peptidase family M16) AMJ96_CH00999 PF05193 Peptidase M16 inactive domain AMJ96_CH01000 PF14821 Threonine synthase N terminus AMJ96_CH01000 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01002 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01003 PF07690 Major Facilitator Superfamily AMJ96_CH01004 PF03466 LysR substrate binding domain AMJ96_CH01004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01012 PF01555 DNA methylase AMJ96_CH01012 PF18755 Restriction Enzyme Adenine Methylase Associated AMJ96_CH01015 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJ96_CH01015 PF14815 NUDIX domain AMJ96_CH01020 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH01021 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01021 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01022 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH01022 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH01022 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMJ96_CH01034 PF04471 Restriction endonuclease AMJ96_CH01034 PF14338 Mrr N-terminal domain AMJ96_CH01036 PF01420 Type I restriction modification DNA specificity domain AMJ96_CH01037 PF02384 N-6 DNA Methylase AMJ96_CH01038 PF04851 Type III restriction enzyme, res subunit AMJ96_CH01038 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMJ96_CH01038 PF00271 Helicase conserved C-terminal domain AMJ96_CH01038 PF08463 EcoEI R protein C-terminal AMJ96_CH01042 PF00106 short chain dehydrogenase AMJ96_CH01043 PF13784 Fic/DOC family N-terminal AMJ96_CH01043 PF02661 Fic/DOC family AMJ96_CH01047 PF00501 AMP-binding enzyme AMJ96_CH01047 PF01553 Acyltransferase AMJ96_CH01049 PF07690 Major Facilitator Superfamily AMJ96_CH01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH01050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH01054 PF01638 HxlR-like helix-turn-helix AMJ96_CH01055 PF05368 NmrA-like family AMJ96_CH01068 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01068 PF03472 Autoinducer binding domain AMJ96_CH01071 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01071 PF00672 HAMP domain AMJ96_CH01072 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01072 PF00072 Response regulator receiver domain AMJ96_CH01073 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH01077 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01080 PF00106 short chain dehydrogenase AMJ96_CH01081 PF12833 Helix-turn-helix domain AMJ96_CH01081 PF06719 AraC-type transcriptional regulator N-terminus AMJ96_CH01084 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01089 PF00484 Carbonic anhydrase AMJ96_CH01090 PF01740 STAS domain AMJ96_CH01090 PF00916 Sulfate permease family AMJ96_CH01091 PF03764 Elongation factor G, domain IV AMJ96_CH01091 PF00679 Elongation factor G C-terminus AMJ96_CH01091 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01091 PF14492 Elongation Factor G, domain II AMJ96_CH01100 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH01103 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH01110 PF02522 Aminoglycoside 3-N-acetyltransferase AMJ96_CH01137 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01148 PF08889 WbqC-like protein family AMJ96_CH01151 PF00535 Glycosyl transferase family 2 AMJ96_CH01152 PF13649 Methyltransferase domain AMJ96_CH01157 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01158 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH01160 PF13180 PDZ domain AMJ96_CH01161 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_CH01161 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH01162 PF03466 LysR substrate binding domain AMJ96_CH01162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01164 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01164 PF00107 Zinc-binding dehydrogenase AMJ96_CH01166 PF17092 Penicillin-binding protein OB-like domain AMJ96_CH01166 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01166 PF00912 Transglycosylase AMJ96_CH01170 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01171 PF01507 Phosphoadenosine phosphosulfate reductase family AMJ96_CH01172 PF01507 Phosphoadenosine phosphosulfate reductase family AMJ96_CH01173 PF02082 Transcriptional regulator AMJ96_CH01174 PF05199 GMC oxidoreductase AMJ96_CH01174 PF00732 GMC oxidoreductase AMJ96_CH01175 PF00171 Aldehyde dehydrogenase family AMJ96_CH01176 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01176 PF13977 BetI-type transcriptional repressor, C-terminal AMJ96_CH01179 PF00563 EAL domain AMJ96_CH01179 PF12792 CSS motif domain associated with EAL AMJ96_CH01180 PF14765 Polyketide synthase dehydratase AMJ96_CH01180 PF00550 Phosphopantetheine attachment site AMJ96_CH01180 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH01180 PF00698 Acyl transferase domain AMJ96_CH01180 PF08659 KR domain AMJ96_CH01180 PF16197 Ketoacyl-synthetase C-terminal extension AMJ96_CH01180 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH01180 PF00107 Zinc-binding dehydrogenase AMJ96_CH01180 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01181 PF07690 Major Facilitator Superfamily AMJ96_CH01183 PF07690 Major Facilitator Superfamily AMJ96_CH01185 PF08220 DeoR-like helix-turn-helix domain AMJ96_CH01185 PF00455 DeoR C terminal sensor domain AMJ96_CH01187 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01187 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01190 PF00005 ABC transporter AMJ96_CH01195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01195 PF03466 LysR substrate binding domain AMJ96_CH01196 PF13409 Glutathione S-transferase, N-terminal domain AMJ96_CH01198 PF01161 Phosphatidylethanolamine-binding protein AMJ96_CH01200 PF00563 EAL domain AMJ96_CH01200 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01200 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH01201 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01201 PF13191 AAA ATPase domain AMJ96_CH01203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH01203 PF13426 PAS domain AMJ96_CH01203 PF08447 PAS fold AMJ96_CH01204 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_CH01205 PF00561 alpha/beta hydrolase fold AMJ96_CH01207 PF04675 DNA ligase N terminus AMJ96_CH01207 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH01207 PF01068 ATP dependent DNA ligase domain AMJ96_CH01209 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01209 PF17969 L,D-transpeptidase C-terminal domain AMJ96_CH01210 PF17969 L,D-transpeptidase C-terminal domain AMJ96_CH01210 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01211 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH01213 PF01165 Ribosomal protein S21 AMJ96_CH01215 PF01047 MarR family AMJ96_CH01216 PF02566 OsmC-like protein AMJ96_CH01220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01220 PF18029 Glyoxalase-like domain AMJ96_CH01221 PF12848 ABC transporter AMJ96_CH01221 PF16326 ABC transporter C-terminal domain AMJ96_CH01221 PF00005 ABC transporter AMJ96_CH01222 PF16326 ABC transporter C-terminal domain AMJ96_CH01222 PF12848 ABC transporter AMJ96_CH01222 PF00005 ABC transporter AMJ96_CH01223 PF05872 Bacterial protein of unknown function (DUF853) AMJ96_CH01225 PF00293 NUDIX domain AMJ96_CH01227 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMJ96_CH01227 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMJ96_CH01228 PF13649 Methyltransferase domain AMJ96_CH01229 PF01595 Cyclin M transmembrane N-terminal domain AMJ96_CH01229 PF03471 Transporter associated domain AMJ96_CH01229 PF00571 CBS domain AMJ96_CH01232 PF00107 Zinc-binding dehydrogenase AMJ96_CH01232 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01233 PF01063 Amino-transferase class IV AMJ96_CH01234 PF03466 LysR substrate binding domain AMJ96_CH01234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01235 PF13533 Biotin-lipoyl like AMJ96_CH01236 PF07690 Major Facilitator Superfamily AMJ96_CH01238 PF02540 NAD synthase AMJ96_CH01239 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01239 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01241 PF07690 Major Facilitator Superfamily AMJ96_CH01243 PF01925 Sulfite exporter TauE/SafE AMJ96_CH01244 PF08241 Methyltransferase domain AMJ96_CH01246 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMJ96_CH01246 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMJ96_CH01249 PF01810 LysE type translocator AMJ96_CH01253 PF03466 LysR substrate binding domain AMJ96_CH01253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01254 PF01322 Cytochrome C' AMJ96_CH01255 PF00034 Cytochrome c AMJ96_CH01259 PF02583 Metal-sensitive transcriptional repressor AMJ96_CH01263 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01264 PF01011 PQQ enzyme repeat AMJ96_CH01265 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMJ96_CH01266 PF07690 Major Facilitator Superfamily AMJ96_CH01268 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMJ96_CH01268 PF00326 Prolyl oligopeptidase family AMJ96_CH01274 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01276 PF03006 Haemolysin-III related AMJ96_CH01279 PF06233 Usg-like family AMJ96_CH01280 PF00166 Chaperonin 10 Kd subunit AMJ96_CH01281 PF00118 TCP-1/cpn60 chaperonin family AMJ96_CH01283 PF13439 Glycosyltransferase Family 4 AMJ96_CH01286 PF00011 Hsp20/alpha crystallin family AMJ96_CH01287 PF00011 Hsp20/alpha crystallin family AMJ96_CH01289 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH01289 PF03352 Methyladenine glycosylase AMJ96_CH01289 PF00958 GMP synthase C terminal domain AMJ96_CH01289 PF00117 Glutamine amidotransferase class-I AMJ96_CH01289 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH01290 PF01641 SelR domain AMJ96_CH01293 PF05443 ROS/MUCR transcriptional regulator protein AMJ96_CH01294 PF02657 Fe-S metabolism associated domain AMJ96_CH01295 PF17264 Family of unknown function (DUF5330) AMJ96_CH01297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01297 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01299 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH01299 PF00672 HAMP domain AMJ96_CH01299 PF12729 Four helix bundle sensory module for signal transduction AMJ96_CH01306 PF00912 Transglycosylase AMJ96_CH01306 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01307 PF03692 Putative zinc- or iron-chelating domain AMJ96_CH01309 PF00106 short chain dehydrogenase AMJ96_CH01314 PF00155 Aminotransferase class I and II AMJ96_CH01314 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH01316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01316 PF03466 LysR substrate binding domain AMJ96_CH01317 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01320 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01326 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01326 PF00072 Response regulator receiver domain AMJ96_CH01327 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01327 PF00672 HAMP domain AMJ96_CH01330 PF03100 CcmE AMJ96_CH01331 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMJ96_CH01331 PF01578 Cytochrome C assembly protein AMJ96_CH01332 PF03918 Cytochrome C biogenesis protein AMJ96_CH01333 PF13180 PDZ domain AMJ96_CH01334 PF00072 Response regulator receiver domain AMJ96_CH01334 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01335 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01335 PF00672 HAMP domain AMJ96_CH01336 PF08335 GlnD PII-uridylyltransferase AMJ96_CH01336 PF03710 Glutamate-ammonia ligase adenylyltransferase AMJ96_CH01337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01337 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01337 PF00989 PAS fold AMJ96_CH01338 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMJ96_CH01338 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMJ96_CH01338 PF01433 Peptidase family M1 domain AMJ96_CH01344 PF00012 Hsp70 protein AMJ96_CH01345 PF00873 AcrB/AcrD/AcrF family AMJ96_CH01346 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_CH01350 PF17969 L,D-transpeptidase C-terminal domain AMJ96_CH01350 PF01476 LysM domain AMJ96_CH01350 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01352 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH01353 PF00571 CBS domain AMJ96_CH01353 PF01769 Divalent cation transporter AMJ96_CH01353 PF03448 MgtE intracellular N domain AMJ96_CH01354 PF07690 Major Facilitator Superfamily AMJ96_CH01355 PF00781 Diacylglycerol kinase catalytic domain AMJ96_CH01356 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH01357 PF00202 Aminotransferase class-III AMJ96_CH01358 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJ96_CH01359 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJ96_CH01360 PF00535 Glycosyl transferase family 2 AMJ96_CH01361 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJ96_CH01363 PF04542 Sigma-70 region 2 AMJ96_CH01363 PF08281 Sigma-70, region 4 AMJ96_CH01365 PF03795 YCII-related domain AMJ96_CH01366 PF03795 YCII-related domain AMJ96_CH01368 PF01048 Phosphorylase superfamily AMJ96_CH01368 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AMJ96_CH01384 PF04962 KduI/IolB family AMJ96_CH01385 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH01386 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH01386 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH01386 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH01387 PF00294 pfkB family carbohydrate kinase AMJ96_CH01389 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH01389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01390 PF14759 Reductase C-terminal AMJ96_CH01390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01392 PF02530 Porin subfamily AMJ96_CH01393 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH01394 PF02706 Chain length determinant protein AMJ96_CH01394 PF13614 AAA domain AMJ96_CH01394 PF13807 G-rich domain on putative tyrosine kinase AMJ96_CH01395 PF08323 Starch synthase catalytic domain AMJ96_CH01395 PF00534 Glycosyl transferases group 1 AMJ96_CH01397 PF00535 Glycosyl transferase family 2 AMJ96_CH01402 PF02397 Bacterial sugar transferase AMJ96_CH01403 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01406 PF00072 Response regulator receiver domain AMJ96_CH01406 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01407 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01408 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01408 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH01409 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01411 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH01412 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01416 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH01416 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01418 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01418 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH01420 PF00664 ABC transporter transmembrane region AMJ96_CH01420 PF00005 ABC transporter AMJ96_CH01420 PF03412 Peptidase C39 family AMJ96_CH01425 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH01426 PF01668 SmpB protein AMJ96_CH01428 PF01192 RNA polymerase Rpb6 AMJ96_CH01429 PF04607 Region found in RelA / SpoT proteins AMJ96_CH01429 PF13291 ACT domain AMJ96_CH01429 PF02824 TGS domain AMJ96_CH01432 PF01648 4'-phosphopantetheinyl transferase superfamily AMJ96_CH01433 PF10502 Signal peptidase, peptidase S26 AMJ96_CH01434 PF14622 Ribonuclease-III-like AMJ96_CH01434 PF00035 Double-stranded RNA binding motif AMJ96_CH01435 PF01926 50S ribosome-binding GTPase AMJ96_CH01435 PF07650 KH domain AMJ96_CH01436 PF13545 Crp-like helix-turn-helix domain AMJ96_CH01436 PF00027 Cyclic nucleotide-binding domain AMJ96_CH01438 PF02565 Recombination protein O C terminal AMJ96_CH01438 PF11967 Recombination protein O N terminal AMJ96_CH01439 PF00248 Aldo/keto reductase family AMJ96_CH01441 PF01966 HD domain AMJ96_CH01442 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01442 PF00563 EAL domain AMJ96_CH01442 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH01442 PF13188 PAS domain AMJ96_CH01444 PF00080 Copper/zinc superoxide dismutase (SODC) AMJ96_CH01445 PF00924 Mechanosensitive ion channel AMJ96_CH01445 PF05552 Conserved TM helix AMJ96_CH01447 PF01966 HD domain AMJ96_CH01448 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH01452 PF00293 NUDIX domain AMJ96_CH01453 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMJ96_CH01456 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH01457 PF02666 Phosphatidylserine decarboxylase AMJ96_CH01458 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH01460 PF00574 Clp protease AMJ96_CH01461 PF00005 ABC transporter AMJ96_CH01461 PF00664 ABC transporter transmembrane region AMJ96_CH01463 PF03641 Possible lysine decarboxylase AMJ96_CH01464 PF03466 LysR substrate binding domain AMJ96_CH01464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01465 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH01468 PF00892 EamA-like transporter family AMJ96_CH01469 PF00682 HMGL-like AMJ96_CH01469 PF08502 LeuA allosteric (dimerisation) domain AMJ96_CH01470 PF00561 alpha/beta hydrolase fold AMJ96_CH01474 PF04480 Protein of unknown function (DUF559) AMJ96_CH01475 PF01406 tRNA synthetases class I (C) catalytic domain AMJ96_CH01477 PF01183 Glycosyl hydrolases family 25 AMJ96_CH01478 PF00106 short chain dehydrogenase AMJ96_CH01479 PF13537 Glutamine amidotransferase domain AMJ96_CH01479 PF00156 Phosphoribosyl transferase domain AMJ96_CH01480 PF02674 Colicin V production protein AMJ96_CH01481 PF18073 Rubredoxin metal binding domain AMJ96_CH01481 PF06745 KaiC AMJ96_CH01482 PF01810 LysE type translocator AMJ96_CH01483 PF01168 Alanine racemase, N-terminal domain AMJ96_CH01483 PF00842 Alanine racemase, C-terminal domain AMJ96_CH01484 PF12833 Helix-turn-helix domain AMJ96_CH01484 PF12852 Cupin AMJ96_CH01487 PF00772 DnaB-like helicase N terminal domain AMJ96_CH01487 PF03796 DnaB-like helicase C terminal domain AMJ96_CH01488 PF01281 Ribosomal protein L9, N-terminal domain AMJ96_CH01488 PF03948 Ribosomal protein L9, C-terminal domain AMJ96_CH01490 PF01084 Ribosomal protein S18 AMJ96_CH01491 PF01250 Ribosomal protein S6 AMJ96_CH01492 PF00248 Aldo/keto reductase family AMJ96_CH01493 PF00698 Acyl transferase domain AMJ96_CH01495 PF00550 Phosphopantetheine attachment site AMJ96_CH01496 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH01496 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH01497 PF02618 YceG-like family AMJ96_CH01498 PF08340 Domain of unknown function (DUF1732) AMJ96_CH01498 PF03755 YicC-like family, N-terminal region AMJ96_CH01499 PF00625 Guanylate kinase AMJ96_CH01500 PF00398 Ribosomal RNA adenine dimethylase AMJ96_CH01501 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMJ96_CH01503 PF03968 OstA-like protein AMJ96_CH01503 PF04453 LPS transport system D AMJ96_CH01506 PF01569 PAP2 superfamily AMJ96_CH01507 PF00883 Cytosol aminopeptidase family, catalytic domain AMJ96_CH01507 PF02789 Cytosol aminopeptidase family, N-terminal domain AMJ96_CH01509 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMJ96_CH01510 PF00326 Prolyl oligopeptidase family AMJ96_CH01511 PF01522 Polysaccharide deacetylase AMJ96_CH01512 PF00005 ABC transporter AMJ96_CH01512 PF12848 ABC transporter AMJ96_CH01513 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01513 PF00072 Response regulator receiver domain AMJ96_CH01516 PF00334 Nucleoside diphosphate kinase AMJ96_CH01520 PF02391 MoaE protein AMJ96_CH01522 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH01523 PF01541 GIY-YIG catalytic domain AMJ96_CH01523 PF08459 UvrC Helix-hairpin-helix N-terminal AMJ96_CH01523 PF12826 Helix-hairpin-helix motif AMJ96_CH01523 PF02151 UvrB/uvrC motif AMJ96_CH01525 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH01527 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMJ96_CH01528 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH01528 PF00384 Molybdopterin oxidoreductase AMJ96_CH01528 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH01529 PF00293 NUDIX domain AMJ96_CH01530 PF07969 Amidohydrolase family AMJ96_CH01531 PF00551 Formyl transferase AMJ96_CH01532 PF00586 AIR synthase related protein, N-terminal domain AMJ96_CH01532 PF02769 AIR synthase related protein, C-terminal domain AMJ96_CH01533 PF01594 AI-2E family transporter AMJ96_CH01535 PF17941 Polyphosphate kinase C-terminal domain 1 AMJ96_CH01535 PF13090 Polyphosphate kinase C-terminal domain 2 AMJ96_CH01535 PF13089 Polyphosphate kinase N-terminal domain AMJ96_CH01535 PF02503 Polyphosphate kinase middle domain AMJ96_CH01538 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01539 PF00570 HRDC domain AMJ96_CH01539 PF01612 3'-5' exonuclease AMJ96_CH01540 PF07732 Multicopper oxidase AMJ96_CH01540 PF00394 Multicopper oxidase AMJ96_CH01540 PF07731 Multicopper oxidase AMJ96_CH01541 PF02938 GAD domain AMJ96_CH01541 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH01541 PF01336 OB-fold nucleic acid binding domain AMJ96_CH01543 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJ96_CH01543 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJ96_CH01546 PF04376 Arginine-tRNA-protein transferase, N terminus AMJ96_CH01546 PF04377 Arginine-tRNA-protein transferase, C terminus AMJ96_CH01548 PF00490 Delta-aminolevulinic acid dehydratase AMJ96_CH01552 PF00464 Serine hydroxymethyltransferase AMJ96_CH01553 PF03477 ATP cone domain AMJ96_CH01554 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJ96_CH01554 PF01872 RibD C-terminal domain AMJ96_CH01555 PF00677 Lumazine binding domain AMJ96_CH01556 PF03352 Methyladenine glycosylase AMJ96_CH01556 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH01556 PF00117 Glutamine amidotransferase class-I AMJ96_CH01556 PF00958 GMP synthase C terminal domain AMJ96_CH01556 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH01559 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMJ96_CH01560 PF01029 NusB family AMJ96_CH01561 PF03030 Inorganic H+ pyrophosphatase AMJ96_CH01565 PF02504 Fatty acid synthesis protein AMJ96_CH01566 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMJ96_CH01566 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMJ96_CH01567 PF00216 Bacterial DNA-binding protein AMJ96_CH01568 PF13411 MerR HTH family regulatory protein AMJ96_CH01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01570 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01570 PF08448 PAS fold AMJ96_CH01570 PF13188 PAS domain AMJ96_CH01570 PF00072 Response regulator receiver domain AMJ96_CH01573 PF07238 PilZ domain AMJ96_CH01573 PF00535 Glycosyl transferase family 2 AMJ96_CH01573 PF03552 Cellulose synthase AMJ96_CH01575 PF01270 Glycosyl hydrolases family 8 AMJ96_CH01577 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01584 PF00480 ROK family AMJ96_CH01588 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01589 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01591 PF02397 Bacterial sugar transferase AMJ96_CH01592 PF13439 Glycosyltransferase Family 4 AMJ96_CH01592 PF00534 Glycosyl transferases group 1 AMJ96_CH01594 PF02706 Chain length determinant protein AMJ96_CH01597 PF02628 Cytochrome oxidase assembly protein AMJ96_CH01599 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJ96_CH01600 PF00491 Arginase family AMJ96_CH01601 PF07690 Major Facilitator Superfamily AMJ96_CH01602 PF00380 Ribosomal protein S9/S16 AMJ96_CH01603 PF00572 Ribosomal protein L13 AMJ96_CH01604 PF00378 Enoyl-CoA hydratase/isomerase AMJ96_CH01607 PF13380 CoA binding domain AMJ96_CH01608 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH01616 PF00563 EAL domain AMJ96_CH01616 PF13188 PAS domain AMJ96_CH01616 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01616 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH01617 PF00067 Cytochrome P450 AMJ96_CH01618 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01618 PF17151 Periplasmic sensor domain AMJ96_CH01619 PF00574 Clp protease AMJ96_CH01620 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH01620 PF06689 ClpX C4-type zinc finger AMJ96_CH01620 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH01621 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH01621 PF05362 Lon protease (S16) C-terminal proteolytic domain AMJ96_CH01621 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMJ96_CH01623 PF00216 Bacterial DNA-binding protein AMJ96_CH01625 PF00892 EamA-like transporter family AMJ96_CH01626 PF00248 Aldo/keto reductase family AMJ96_CH01630 PF00255 Glutathione peroxidase AMJ96_CH01634 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMJ96_CH01635 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH01636 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMJ96_CH01637 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMJ96_CH01640 PF10531 SLBB domain AMJ96_CH01640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH01640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH01641 PF00829 Ribosomal prokaryotic L21 protein AMJ96_CH01642 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMJ96_CH01642 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH01642 PF00384 Molybdopterin oxidoreductase AMJ96_CH01643 PF00146 NADH dehydrogenase AMJ96_CH01644 PF12838 4Fe-4S dicluster domain AMJ96_CH01645 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMJ96_CH01646 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJ96_CH01647 PF00361 Proton-conducting membrane transporter AMJ96_CH01647 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMJ96_CH01648 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMJ96_CH01648 PF00361 Proton-conducting membrane transporter AMJ96_CH01649 PF00361 Proton-conducting membrane transporter AMJ96_CH01650 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH01650 PF02237 Biotin protein ligase C terminal domain AMJ96_CH01650 PF08279 HTH domain AMJ96_CH01651 PF12706 Beta-lactamase superfamily domain AMJ96_CH01651 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMJ96_CH01651 PF17770 Ribonuclease J C-terminal domain AMJ96_CH01654 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH01654 PF03129 Anticodon binding domain AMJ96_CH01655 PF02687 FtsX-like permease family AMJ96_CH01655 PF12704 MacB-like periplasmic core domain AMJ96_CH01656 PF00005 ABC transporter AMJ96_CH01658 PF14579 Helix-hairpin-helix motif AMJ96_CH01658 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMJ96_CH01658 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMJ96_CH01658 PF02811 PHP domain AMJ96_CH01660 PF00817 impB/mucB/samB family AMJ96_CH01660 PF11799 impB/mucB/samB family C-terminal domain AMJ96_CH01664 PF00072 Response regulator receiver domain AMJ96_CH01665 PF00072 Response regulator receiver domain AMJ96_CH01665 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01667 PF00471 Ribosomal protein L33 AMJ96_CH01668 PF07690 Major Facilitator Superfamily AMJ96_CH01670 PF08461 Ribonuclease R winged-helix domain AMJ96_CH01670 PF00773 RNB domain AMJ96_CH01670 PF17876 Cold shock domain AMJ96_CH01670 PF00575 S1 RNA binding domain AMJ96_CH01670 PF08206 Ribonuclease B OB domain AMJ96_CH01671 PF01396 Topoisomerase DNA binding C4 zinc finger AMJ96_CH01671 PF13368 Topoisomerase C-terminal repeat AMJ96_CH01671 PF01751 Toprim domain AMJ96_CH01671 PF01131 DNA topoisomerase AMJ96_CH01672 PF17782 DprA winged helix domain AMJ96_CH01672 PF02481 DNA recombination-mediator protein A AMJ96_CH01673 PF02660 Glycerol-3-phosphate acyltransferase AMJ96_CH01674 PF01979 Amidohydrolase family AMJ96_CH01675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJ96_CH01675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJ96_CH01676 PF18158 Adaptive response protein AidB N-terminal domain AMJ96_CH01676 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH01676 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH01677 PF12111 Polyribonucleotide phosphorylase C terminal AMJ96_CH01677 PF00575 S1 RNA binding domain AMJ96_CH01677 PF10150 Ribonuclease E/G family AMJ96_CH01678 PF11741 AMIN domain AMJ96_CH01678 PF01520 N-acetylmuramoyl-L-alanine amidase AMJ96_CH01679 PF17092 Penicillin-binding protein OB-like domain AMJ96_CH01679 PF00912 Transglycosylase AMJ96_CH01679 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01680 PF03462 PCRF domain AMJ96_CH01680 PF00472 RF-1 domain AMJ96_CH01683 PF01513 ATP-NAD kinase AMJ96_CH01688 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMJ96_CH01688 PF00588 SpoU rRNA Methylase family AMJ96_CH01692 PF03144 Elongation factor Tu domain 2 AMJ96_CH01692 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01692 PF03143 Elongation factor Tu C-terminal domain AMJ96_CH01695 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01698 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMJ96_CH01699 PF02357 Transcription termination factor nusG AMJ96_CH01699 PF00467 KOW motif AMJ96_CH01700 PF00298 Ribosomal protein L11, RNA binding domain AMJ96_CH01700 PF03946 Ribosomal protein L11, N-terminal domain AMJ96_CH01701 PF00687 Ribosomal protein L1p/L10e family AMJ96_CH01703 PF00466 Ribosomal protein L10 AMJ96_CH01704 PF16320 Ribosomal protein L7/L12 dimerisation domain AMJ96_CH01704 PF00542 Ribosomal protein L7/L12 C-terminal domain AMJ96_CH01706 PF10385 RNA polymerase beta subunit external 1 domain AMJ96_CH01706 PF04560 RNA polymerase Rpb2, domain 7 AMJ96_CH01706 PF04561 RNA polymerase Rpb2, domain 2 AMJ96_CH01706 PF04565 RNA polymerase Rpb2, domain 3 AMJ96_CH01706 PF04563 RNA polymerase beta subunit AMJ96_CH01706 PF00562 RNA polymerase Rpb2, domain 6 AMJ96_CH01707 PF04983 RNA polymerase Rpb1, domain 3 AMJ96_CH01707 PF04997 RNA polymerase Rpb1, domain 1 AMJ96_CH01707 PF00623 RNA polymerase Rpb1, domain 2 AMJ96_CH01707 PF05000 RNA polymerase Rpb1, domain 4 AMJ96_CH01707 PF04998 RNA polymerase Rpb1, domain 5 AMJ96_CH01710 PF00164 Ribosomal protein S12/S23 AMJ96_CH01711 PF00177 Ribosomal protein S7p/S5e AMJ96_CH01712 PF03764 Elongation factor G, domain IV AMJ96_CH01712 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01712 PF14492 Elongation Factor G, domain II AMJ96_CH01712 PF03144 Elongation factor Tu domain 2 AMJ96_CH01712 PF00679 Elongation factor G C-terminus AMJ96_CH01713 PF03143 Elongation factor Tu C-terminal domain AMJ96_CH01713 PF03144 Elongation factor Tu domain 2 AMJ96_CH01713 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01714 PF00338 Ribosomal protein S10p/S20e AMJ96_CH01715 PF00297 Ribosomal protein L3 AMJ96_CH01716 PF00573 Ribosomal protein L4/L1 family AMJ96_CH01717 PF00276 Ribosomal protein L23 AMJ96_CH01718 PF00181 Ribosomal Proteins L2, RNA binding domain AMJ96_CH01718 PF03947 Ribosomal Proteins L2, C-terminal domain AMJ96_CH01719 PF00203 Ribosomal protein S19 AMJ96_CH01720 PF00237 Ribosomal protein L22p/L17e AMJ96_CH01721 PF07650 KH domain AMJ96_CH01721 PF00189 Ribosomal protein S3, C-terminal domain AMJ96_CH01722 PF00252 Ribosomal protein L16p/L10e AMJ96_CH01723 PF00831 Ribosomal L29 protein AMJ96_CH01724 PF00366 Ribosomal protein S17 AMJ96_CH01725 PF00238 Ribosomal protein L14p/L23e AMJ96_CH01726 PF00467 KOW motif AMJ96_CH01726 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMJ96_CH01727 PF00281 Ribosomal protein L5 AMJ96_CH01727 PF00673 ribosomal L5P family C-terminus AMJ96_CH01728 PF00253 Ribosomal protein S14p/S29e AMJ96_CH01729 PF00410 Ribosomal protein S8 AMJ96_CH01730 PF00347 Ribosomal protein L6 AMJ96_CH01731 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMJ96_CH01732 PF03719 Ribosomal protein S5, C-terminal domain AMJ96_CH01732 PF00333 Ribosomal protein S5, N-terminal domain AMJ96_CH01733 PF00327 Ribosomal protein L30p/L7e AMJ96_CH01734 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMJ96_CH01736 PF00344 SecY translocase AMJ96_CH01737 PF05191 Adenylate kinase, active site lid AMJ96_CH01738 PF00416 Ribosomal protein S13/S18 AMJ96_CH01740 PF00411 Ribosomal protein S11 AMJ96_CH01742 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMJ96_CH01742 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMJ96_CH01742 PF01000 RNA polymerase Rpb3/RpoA insert domain AMJ96_CH01743 PF01196 Ribosomal protein L17 AMJ96_CH01745 PF01794 Ferric reductase like transmembrane component AMJ96_CH01746 PF00174 Oxidoreductase molybdopterin binding domain AMJ96_CH01747 PF00920 Dehydratase family AMJ96_CH01750 PF00595 PDZ domain AMJ96_CH01751 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH01751 PF12002 MgsA AAA+ ATPase C terminal AMJ96_CH01751 PF16193 AAA C-terminal domain AMJ96_CH01754 PF02558 Ketopantoate reductase PanE/ApbA AMJ96_CH01754 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMJ96_CH01755 PF00106 short chain dehydrogenase AMJ96_CH01756 PF03466 LysR substrate binding domain AMJ96_CH01756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01758 PF07859 alpha/beta hydrolase fold AMJ96_CH01760 PF00989 PAS fold AMJ96_CH01760 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01760 PF16736 Single Cache-like AMJ96_CH01761 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH01762 PF01144 Coenzyme A transferase AMJ96_CH01763 PF00378 Enoyl-CoA hydratase/isomerase AMJ96_CH01765 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH01767 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01768 PF17912 MalK OB fold domain AMJ96_CH01768 PF00005 ABC transporter AMJ96_CH01769 PF05199 GMC oxidoreductase AMJ96_CH01769 PF00732 GMC oxidoreductase AMJ96_CH01770 PF05199 GMC oxidoreductase AMJ96_CH01770 PF00732 GMC oxidoreductase AMJ96_CH01771 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH01771 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01772 PF02910 Fumarate reductase flavoprotein C-term AMJ96_CH01772 PF00890 FAD binding domain AMJ96_CH01778 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01778 PF00072 Response regulator receiver domain AMJ96_CH01779 PF05384 Sensor protein DegS AMJ96_CH01779 PF07730 Histidine kinase AMJ96_CH01779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01781 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH01789 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMJ96_CH01790 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH01791 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH01792 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01793 PF04209 homogentisate 1,2-dioxygenase AMJ96_CH01795 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01795 PF14497 Glutathione S-transferase, C-terminal domain AMJ96_CH01802 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH01803 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AMJ96_CH01803 PF02867 Ribonucleotide reductase, barrel domain AMJ96_CH01806 PF00156 Phosphoribosyl transferase domain AMJ96_CH01808 PF00994 Probable molybdopterin binding domain AMJ96_CH01808 PF18146 Damage-inducible protein CinA KH domain AMJ96_CH01808 PF02464 Competence-damaged protein AMJ96_CH01811 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01811 PF00585 C-terminal regulatory domain of Threonine dehydratase AMJ96_CH01813 PF05230 MASE2 domain AMJ96_CH01813 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH01816 PF02525 Flavodoxin-like fold AMJ96_CH01817 PF03466 LysR substrate binding domain AMJ96_CH01817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01818 PF02872 5'-nucleotidase, C-terminal domain AMJ96_CH01818 PF00149 Calcineurin-like phosphoesterase AMJ96_CH01821 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH01822 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_CH01822 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_CH01825 PF00581 Rhodanese-like domain AMJ96_CH01826 PF01411 tRNA synthetases class II (A) AMJ96_CH01826 PF02272 DHHA1 domain AMJ96_CH01826 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH01827 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01828 PF12973 ChrR Cupin-like domain AMJ96_CH01829 PF00106 short chain dehydrogenase AMJ96_CH01831 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01832 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_CH01832 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH01832 PF00384 Molybdopterin oxidoreductase AMJ96_CH01832 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH01834 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01834 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMJ96_CH01834 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJ96_CH01834 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_CH01834 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJ96_CH01835 PF07690 Major Facilitator Superfamily AMJ96_CH01837 PF03861 ANTAR domain AMJ96_CH01837 PF08376 Nitrate and nitrite sensing AMJ96_CH01838 PF00578 AhpC/TSA family AMJ96_CH01838 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMJ96_CH01841 PF05161 MOFRL family AMJ96_CH01841 PF13660 Domain of unknown function (DUF4147) AMJ96_CH01849 PF05532 CsbD-like AMJ96_CH01861 PF08264 Anticodon-binding domain of tRNA AMJ96_CH01861 PF10458 Valyl tRNA synthetase tRNA binding arm AMJ96_CH01861 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH01864 PF08238 Sel1 repeat AMJ96_CH01866 PF01521 Iron-sulphur cluster biosynthesis AMJ96_CH01867 PF13286 Phosphohydrolase-associated domain AMJ96_CH01867 PF01966 HD domain AMJ96_CH01868 PF03485 Arginyl tRNA synthetase N terminal domain AMJ96_CH01868 PF00750 tRNA synthetases class I (R) AMJ96_CH01868 PF05746 DALR anticodon binding domain AMJ96_CH01870 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_CH01871 PF02616 Segregation and condensation protein ScpA AMJ96_CH01872 PF04079 Segregation and condensation complex subunit ScpB AMJ96_CH01873 PF02416 mttA/Hcf106 family AMJ96_CH01874 PF02416 mttA/Hcf106 family AMJ96_CH01875 PF00902 Sec-independent protein translocase protein (TatC) AMJ96_CH01876 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH01876 PF02403 Seryl-tRNA synthetase N-terminal domain AMJ96_CH01877 PF01975 Survival protein SurE AMJ96_CH01883 PF01551 Peptidase family M23 AMJ96_CH01883 PF01476 LysM domain AMJ96_CH01883 PF08525 Opacity-associated protein A N-terminal motif AMJ96_CH01885 PF02699 Preprotein translocase subunit AMJ96_CH01886 PF07549 SecD/SecF GG Motif AMJ96_CH01886 PF02355 Protein export membrane protein AMJ96_CH01890 PF01134 Glucose inhibited division protein A AMJ96_CH01899 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJ96_CH01899 PF05697 Bacterial trigger factor protein (TF) AMJ96_CH01899 PF05698 Bacterial trigger factor protein (TF) C-terminus AMJ96_CH01901 PF02310 B12 binding domain AMJ96_CH01901 PF04055 Radical SAM superfamily AMJ96_CH01901 PF13282 Domain of unknown function (DUF4070) AMJ96_CH01903 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01903 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH01904 PF01070 FMN-dependent dehydrogenase AMJ96_CH01906 PF04002 RadC-like JAB domain AMJ96_CH01907 PF00557 Metallopeptidase family M24 AMJ96_CH01911 PF03652 Holliday junction resolvase AMJ96_CH01913 PF02686 Glu-tRNAGln amidotransferase C subunit AMJ96_CH01914 PF01425 Amidase AMJ96_CH01920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH01920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH01923 PF02934 GatB/GatE catalytic domain AMJ96_CH01923 PF02637 GatB domain AMJ96_CH01927 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) AMJ96_CH01929 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMJ96_CH01930 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH01930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH01930 PF00289 Biotin carboxylase, N-terminal domain AMJ96_CH01931 PF00364 Biotin-requiring enzyme AMJ96_CH01932 PF01220 Dehydroquinase class II AMJ96_CH01934 PF00155 Aminotransferase class I and II AMJ96_CH01936 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMJ96_CH01938 PF00155 Aminotransferase class I and II AMJ96_CH01939 PF01842 ACT domain AMJ96_CH01939 PF00742 Homoserine dehydrogenase AMJ96_CH01939 PF03447 Homoserine dehydrogenase, NAD binding domain AMJ96_CH01941 PF17768 RecJ OB domain AMJ96_CH01941 PF02272 DHHA1 domain AMJ96_CH01941 PF01368 DHH family AMJ96_CH01946 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01947 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH01958 PF00005 ABC transporter AMJ96_CH01959 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01960 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01961 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH01962 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH01963 PF01494 FAD binding domain AMJ96_CH01965 PF00561 alpha/beta hydrolase fold AMJ96_CH01966 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01966 PF06426 Serine acetyltransferase, N-terminal AMJ96_CH01969 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH01970 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH01970 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH01970 PF02861 Clp amino terminal domain, pathogenicity island component AMJ96_CH01970 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH01970 PF17871 AAA lid domain AMJ96_CH01971 PF01230 HIT domain AMJ96_CH01976 PF05816 Toxic anion resistance protein (TelA) AMJ96_CH01981 PF00318 Ribosomal protein S2 AMJ96_CH01982 PF00889 Elongation factor TS AMJ96_CH01983 PF00696 Amino acid kinase family AMJ96_CH01984 PF01765 Ribosome recycling factor AMJ96_CH01985 PF01255 Putative undecaprenyl diphosphate synthase AMJ96_CH01987 PF17820 PDZ domain AMJ96_CH01987 PF02163 Peptidase family M50 AMJ96_CH01988 PF07244 Surface antigen variable number repeat AMJ96_CH01988 PF01103 Surface antigen AMJ96_CH01989 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01989 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMJ96_CH01990 PF07977 FabA-like domain AMJ96_CH01991 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01991 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMJ96_CH01992 PF17930 LpxI N-terminal domain AMJ96_CH01992 PF06230 LpxI C-terminal domain AMJ96_CH01993 PF02684 Lipid-A-disaccharide synthetase AMJ96_CH01994 PF00285 Citrate synthase, C-terminal domain AMJ96_CH01996 PF00717 Peptidase S24-like AMJ96_CH01996 PF01726 LexA DNA binding domain AMJ96_CH01999 PF00793 DAHP synthetase I family AMJ96_CH02000 PF03952 Enolase, N-terminal domain AMJ96_CH02000 PF00113 Enolase, C-terminal TIM barrel domain AMJ96_CH02002 PF00676 Dehydrogenase E1 component AMJ96_CH02003 PF02780 Transketolase, C-terminal domain AMJ96_CH02003 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH02003 PF00364 Biotin-requiring enzyme AMJ96_CH02004 PF02817 e3 binding domain AMJ96_CH02004 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_CH02004 PF00364 Biotin-requiring enzyme AMJ96_CH02007 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02007 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH02010 PF04055 Radical SAM superfamily AMJ96_CH02010 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMJ96_CH02012 PF03364 Polyketide cyclase / dehydrase and lipid transport AMJ96_CH02013 PF02464 Competence-damaged protein AMJ96_CH02014 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMJ96_CH02014 PF02542 YgbB family AMJ96_CH02015 PF01207 Dihydrouridine synthase (Dus) AMJ96_CH02016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02016 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02017 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH02017 PF00158 Sigma-54 interaction domain AMJ96_CH02017 PF00072 Response regulator receiver domain AMJ96_CH02018 PF01593 Flavin containing amine oxidoreductase AMJ96_CH02020 PF00107 Zinc-binding dehydrogenase AMJ96_CH02020 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02022 PF03466 LysR substrate binding domain AMJ96_CH02023 PF07690 Major Facilitator Superfamily AMJ96_CH02024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02024 PF03466 LysR substrate binding domain AMJ96_CH02025 PF00155 Aminotransferase class I and II AMJ96_CH02026 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02027 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02028 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02029 PF00005 ABC transporter AMJ96_CH02030 PF13462 Thioredoxin AMJ96_CH02031 PF00248 Aldo/keto reductase family AMJ96_CH02032 PF13458 Periplasmic binding protein AMJ96_CH02033 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH02035 PF00005 ABC transporter AMJ96_CH02035 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH02036 PF00005 ABC transporter AMJ96_CH02038 PF03466 LysR substrate binding domain AMJ96_CH02038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02039 PF05378 Hydantoinase/oxoprolinase N-terminal region AMJ96_CH02039 PF01968 Hydantoinase/oxoprolinase AMJ96_CH02042 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH02043 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02043 PF00672 HAMP domain AMJ96_CH02043 PF00989 PAS fold AMJ96_CH02043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02044 PF00158 Sigma-54 interaction domain AMJ96_CH02044 PF00072 Response regulator receiver domain AMJ96_CH02044 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH02045 PF01063 Amino-transferase class IV AMJ96_CH02046 PF17209 Hfq protein AMJ96_CH02047 PF16360 GTP-binding GTPase Middle Region AMJ96_CH02047 PF01926 50S ribosome-binding GTPase AMJ96_CH02047 PF13167 GTP-binding GTPase N-terminal AMJ96_CH02048 PF03819 MazG nucleotide pyrophosphohydrolase domain AMJ96_CH02050 PF10414 Sirohaem synthase dimerisation region AMJ96_CH02050 PF14824 Sirohaem biosynthesis protein central AMJ96_CH02050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH02054 PF01494 FAD binding domain AMJ96_CH02055 PF03547 Membrane transport protein AMJ96_CH02056 PF02683 Cytochrome C biogenesis protein transmembrane region AMJ96_CH02073 PF01494 FAD binding domain AMJ96_CH02077 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02078 PF00005 ABC transporter AMJ96_CH02078 PF00664 ABC transporter transmembrane region AMJ96_CH02088 PF03928 Haem-degrading AMJ96_CH02089 PF12833 Helix-turn-helix domain AMJ96_CH02091 PF01042 Endoribonuclease L-PSP AMJ96_CH02092 PF02525 Flavodoxin-like fold AMJ96_CH02094 PF07969 Amidohydrolase family AMJ96_CH02096 PF00005 ABC transporter AMJ96_CH02099 PF02633 Creatinine amidohydrolase AMJ96_CH02104 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH02105 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02106 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02107 PF00005 ABC transporter AMJ96_CH02107 PF17912 MalK OB fold domain AMJ96_CH02107 PF03459 TOBE domain AMJ96_CH02109 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02109 PF07729 FCD domain AMJ96_CH02111 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH02112 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02113 PF00005 ABC transporter AMJ96_CH02113 PF00571 CBS domain AMJ96_CH02114 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH02115 PF03786 D-mannonate dehydratase (UxuA) AMJ96_CH02116 PF07729 FCD domain AMJ96_CH02116 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02117 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH02118 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02119 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_CH02119 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02120 PF00005 ABC transporter AMJ96_CH02120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH02121 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH02121 PF00005 ABC transporter AMJ96_CH02122 PF03358 NADPH-dependent FMN reductase AMJ96_CH02123 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH02126 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02127 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02128 PF17912 MalK OB fold domain AMJ96_CH02128 PF00005 ABC transporter AMJ96_CH02133 PF12704 MacB-like periplasmic core domain AMJ96_CH02133 PF02687 FtsX-like permease family AMJ96_CH02133 PF00005 ABC transporter AMJ96_CH02134 PF12704 MacB-like periplasmic core domain AMJ96_CH02134 PF00005 ABC transporter AMJ96_CH02134 PF02687 FtsX-like permease family AMJ96_CH02136 PF00175 Oxidoreductase NAD-binding domain AMJ96_CH02136 PF00970 Oxidoreductase FAD-binding domain AMJ96_CH02139 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02139 PF00107 Zinc-binding dehydrogenase AMJ96_CH02143 PF02608 ABC transporter substrate-binding protein PnrA-like AMJ96_CH02144 PF13407 Periplasmic binding protein domain AMJ96_CH02145 PF00005 ABC transporter AMJ96_CH02146 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH02147 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH02148 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02148 PF07729 FCD domain AMJ96_CH02149 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH02149 PF12804 MobA-like NTP transferase domain AMJ96_CH02150 PF01380 SIS domain AMJ96_CH02152 PF17191 RecG wedge domain AMJ96_CH02152 PF00270 DEAD/DEAH box helicase AMJ96_CH02152 PF00271 Helicase conserved C-terminal domain AMJ96_CH02154 PF02559 CarD-like/TRCF domain AMJ96_CH02154 PF03461 TRCF domain AMJ96_CH02154 PF17757 UvrB interaction domain AMJ96_CH02154 PF00270 DEAD/DEAH box helicase AMJ96_CH02154 PF00271 Helicase conserved C-terminal domain AMJ96_CH02156 PF04229 GrpB protein AMJ96_CH02156 PF01121 Dephospho-CoA kinase AMJ96_CH02158 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH02161 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH02161 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH02162 PF00543 Nitrogen regulatory protein P-II AMJ96_CH02163 PF03853 YjeF-related protein N-terminus AMJ96_CH02163 PF01256 Carbohydrate kinase AMJ96_CH02165 PF17755 UvrA DNA-binding domain AMJ96_CH02165 PF17760 UvrA interaction domain AMJ96_CH02166 PF00436 Single-strand binding protein family AMJ96_CH02168 PF01914 MarC family integral membrane protein AMJ96_CH02169 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJ96_CH02169 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJ96_CH02174 PF01467 Cytidylyltransferase-like AMJ96_CH02175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJ96_CH02176 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJ96_CH02177 PF02547 Queuosine biosynthesis protein AMJ96_CH02178 PF01702 Queuine tRNA-ribosyltransferase AMJ96_CH02180 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH02180 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH02181 PF01638 HxlR-like helix-turn-helix AMJ96_CH02183 PF00459 Inositol monophosphatase family AMJ96_CH02184 PF00005 ABC transporter AMJ96_CH02184 PF08402 TOBE domain AMJ96_CH02185 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02188 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02188 PF00072 Response regulator receiver domain AMJ96_CH02189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02189 PF13426 PAS domain AMJ96_CH02189 PF00072 Response regulator receiver domain AMJ96_CH02196 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02197 PF00005 ABC transporter AMJ96_CH02198 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02199 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02200 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02200 PF07729 FCD domain AMJ96_CH02201 PF00491 Arginase family AMJ96_CH02202 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02203 PF00202 Aminotransferase class-III AMJ96_CH02205 PF00171 Aldehyde dehydrogenase family AMJ96_CH02206 PF00563 EAL domain AMJ96_CH02206 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02206 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH02209 PF00924 Mechanosensitive ion channel AMJ96_CH02212 PF03741 Integral membrane protein TerC family AMJ96_CH02213 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH02213 PF12706 Beta-lactamase superfamily domain AMJ96_CH02214 PF01026 TatD related DNase AMJ96_CH02215 PF08264 Anticodon-binding domain of tRNA AMJ96_CH02215 PF09334 tRNA synthetases class I (M) AMJ96_CH02216 PF01925 Sulfite exporter TauE/SafE AMJ96_CH02217 PF09115 DNA polymerase III, delta subunit, C terminal AMJ96_CH02218 PF02223 Thymidylate kinase AMJ96_CH02220 PF03330 Lytic transglycolase AMJ96_CH02220 PF05036 Sporulation related domain AMJ96_CH02224 PF08274 PhnA Zinc-Ribbon AMJ96_CH02224 PF03831 PhnA domain AMJ96_CH02232 PF02885 Glycosyl transferase family, helical bundle domain AMJ96_CH02232 PF00591 Glycosyl transferase family, a/b domain AMJ96_CH02233 PF00218 Indole-3-glycerol phosphate synthase AMJ96_CH02234 PF01967 MoaC family AMJ96_CH02235 PF03453 MoeA N-terminal region (domain I and II) AMJ96_CH02235 PF03454 MoeA C-terminal region (domain IV) AMJ96_CH02235 PF00994 Probable molybdopterin binding domain AMJ96_CH02238 PF00270 DEAD/DEAH box helicase AMJ96_CH02238 PF00271 Helicase conserved C-terminal domain AMJ96_CH02238 PF03880 DbpA RNA binding domain AMJ96_CH02241 PF00285 Citrate synthase, C-terminal domain AMJ96_CH02242 PF00285 Citrate synthase, C-terminal domain AMJ96_CH02243 PF06418 CTP synthase N-terminus AMJ96_CH02243 PF00117 Glutamine amidotransferase class-I AMJ96_CH02244 PF03840 Preprotein translocase SecG subunit AMJ96_CH02245 PF00121 Triosephosphate isomerase AMJ96_CH02247 PF01751 Toprim domain AMJ96_CH02247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02247 PF00986 DNA gyrase B subunit, carboxyl terminus AMJ96_CH02247 PF00204 DNA gyrase B AMJ96_CH02249 PF01594 AI-2E family transporter AMJ96_CH02250 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02256 PF03129 Anticodon binding domain AMJ96_CH02256 PF02824 TGS domain AMJ96_CH02256 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH02256 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH02258 PF01809 Putative membrane protein insertion efficiency factor AMJ96_CH02259 PF01592 NifU-like N terminal domain AMJ96_CH02260 PF01227 GTP cyclohydrolase I AMJ96_CH02261 PF01502 Phosphoribosyl-AMP cyclohydrolase AMJ96_CH02262 PF01734 Patatin-like phospholipase AMJ96_CH02267 PF00561 alpha/beta hydrolase fold AMJ96_CH02270 PF07943 Penicillin-binding protein 5, C-terminal domain AMJ96_CH02270 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH02273 PF03313 Serine dehydratase alpha chain AMJ96_CH02273 PF03315 Serine dehydratase beta chain AMJ96_CH02276 PF00376 MerR family regulatory protein AMJ96_CH02276 PF09278 MerR, DNA binding AMJ96_CH02277 PF00571 CBS domain AMJ96_CH02277 PF01769 Divalent cation transporter AMJ96_CH02277 PF03448 MgtE intracellular N domain AMJ96_CH02278 PF01327 Polypeptide deformylase AMJ96_CH02283 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH02286 PF00289 Biotin carboxylase, N-terminal domain AMJ96_CH02286 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH02286 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH02286 PF00364 Biotin-requiring enzyme AMJ96_CH02287 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02287 PF00107 Zinc-binding dehydrogenase AMJ96_CH02288 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH02289 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMJ96_CH02290 PF00893 Small Multidrug Resistance protein AMJ96_CH02291 PF07681 DoxX AMJ96_CH02292 PF01039 Carboxyl transferase domain AMJ96_CH02295 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02296 PF01479 S4 domain AMJ96_CH02296 PF00849 RNA pseudouridylate synthase AMJ96_CH02297 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMJ96_CH02302 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH02302 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH02303 PF01597 Glycine cleavage H-protein AMJ96_CH02304 PF02347 Glycine cleavage system P-protein AMJ96_CH02305 PF01183 Glycosyl hydrolases family 25 AMJ96_CH02306 PF00460 Flagella basal body rod protein AMJ96_CH02306 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH02306 PF07559 Flagellar basal body protein FlaE AMJ96_CH02308 PF01521 Iron-sulphur cluster biosynthesis AMJ96_CH02309 PF01883 Iron-sulfur cluster assembly protein AMJ96_CH02310 PF00266 Aminotransferase class-V AMJ96_CH02311 PF01458 Uncharacterized protein family (UPF0051) AMJ96_CH02312 PF00005 ABC transporter AMJ96_CH02314 PF01458 Uncharacterized protein family (UPF0051) AMJ96_CH02316 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMJ96_CH02318 PF03702 Anhydro-N-acetylmuramic acid kinase AMJ96_CH02319 PF01479 S4 domain AMJ96_CH02319 PF00579 tRNA synthetases class I (W and Y) AMJ96_CH02321 PF16657 Maltogenic Amylase, C-terminal domain AMJ96_CH02321 PF00128 Alpha amylase, catalytic domain AMJ96_CH02323 PF00578 AhpC/TSA family AMJ96_CH02324 PF04305 Protein of unknown function (DUF455) AMJ96_CH02325 PF01464 Transglycosylase SLT domain AMJ96_CH02325 PF10145 Phage-related minor tail protein AMJ96_CH02325 PF01551 Peptidase family M23 AMJ96_CH02326 PF00270 DEAD/DEAH box helicase AMJ96_CH02326 PF00271 Helicase conserved C-terminal domain AMJ96_CH02327 PF00293 NUDIX domain AMJ96_CH02327 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH02329 PF01613 Flavin reductase like domain AMJ96_CH02331 PF00834 Ribulose-phosphate 3 epimerase family AMJ96_CH02334 PF00206 Lyase AMJ96_CH02334 PF10397 Adenylosuccinate lyase C-terminus AMJ96_CH02339 PF00563 EAL domain AMJ96_CH02339 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH02339 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02340 PF01259 SAICAR synthetase AMJ96_CH02341 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMJ96_CH02342 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMJ96_CH02346 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02346 PF07729 FCD domain AMJ96_CH02348 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMJ96_CH02348 PF02769 AIR synthase related protein, C-terminal domain AMJ96_CH02348 PF00586 AIR synthase related protein, N-terminal domain AMJ96_CH02350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH02350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH02351 PF01220 Dehydroquinase class II AMJ96_CH02353 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_CH02353 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMJ96_CH02354 PF00005 ABC transporter AMJ96_CH02355 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02356 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02357 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02360 PF00775 Dioxygenase AMJ96_CH02360 PF04444 Catechol dioxygenase N terminus AMJ96_CH02361 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH02362 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH02366 PF00462 Glutaredoxin AMJ96_CH02367 PF07690 Major Facilitator Superfamily AMJ96_CH02368 PF07690 Major Facilitator Superfamily AMJ96_CH02370 PF00459 Inositol monophosphatase family AMJ96_CH02371 PF00459 Inositol monophosphatase family AMJ96_CH02372 PF01171 PP-loop family AMJ96_CH02373 PF04960 Glutaminase AMJ96_CH02374 PF01479 S4 domain AMJ96_CH02374 PF00163 Ribosomal protein S4/S9 N-terminal domain AMJ96_CH02377 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH02378 PF00588 SpoU rRNA Methylase family AMJ96_CH02381 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_CH02386 PF01411 tRNA synthetases class II (A) AMJ96_CH02386 PF02272 DHHA1 domain AMJ96_CH02386 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH02387 PF00154 recA bacterial DNA recombination protein AMJ96_CH02389 PF04227 Indigoidine synthase A like protein AMJ96_CH02390 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02390 PF00072 Response regulator receiver domain AMJ96_CH02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02390 PF08448 PAS fold AMJ96_CH02390 PF13188 PAS domain AMJ96_CH02393 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMJ96_CH02395 PF04317 YcjX-like family, DUF463 AMJ96_CH02396 PF05128 Domain of unknown function (DUF697) AMJ96_CH02398 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMJ96_CH02400 PF00809 Pterin binding enzyme AMJ96_CH02403 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH02408 PF07943 Penicillin-binding protein 5, C-terminal domain AMJ96_CH02408 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH02411 PF00005 ABC transporter AMJ96_CH02412 PF02405 Permease MlaE AMJ96_CH02413 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_CH02413 PF13378 Enolase C-terminal domain-like AMJ96_CH02414 PF12832 MFS_1 like family AMJ96_CH02418 PF01565 FAD binding domain AMJ96_CH02418 PF08031 Berberine and berberine like AMJ96_CH02419 PF03949 Malic enzyme, NAD binding domain AMJ96_CH02419 PF00390 Malic enzyme, N-terminal domain AMJ96_CH02419 PF01515 Phosphate acetyl/butaryl transferase AMJ96_CH02420 PF00075 RNase H AMJ96_CH02422 PF04542 Sigma-70 region 2 AMJ96_CH02422 PF08281 Sigma-70, region 4 AMJ96_CH02423 PF03795 YCII-related domain AMJ96_CH02425 PF00881 Nitroreductase family AMJ96_CH02428 PF00793 DAHP synthetase I family AMJ96_CH02429 PF07676 WD40-like Beta Propeller Repeat AMJ96_CH02430 PF02540 NAD synthase AMJ96_CH02430 PF00795 Carbon-nitrogen hydrolase AMJ96_CH02433 PF00664 ABC transporter transmembrane region AMJ96_CH02433 PF00005 ABC transporter AMJ96_CH02434 PF01474 Class-II DAHP synthetase family AMJ96_CH02436 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH02436 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02438 PF00708 Acylphosphatase AMJ96_CH02440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMJ96_CH02441 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02442 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH02443 PF00206 Lyase AMJ96_CH02443 PF10415 Fumarase C C-terminus AMJ96_CH02444 PF17803 Bacterial cadherin-like domain AMJ96_CH02445 PF05681 Fumarate hydratase (Fumerase) AMJ96_CH02445 PF05683 Fumarase C-terminus AMJ96_CH02446 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02446 PF17158 Membrane-associated sensor, integral membrane domain AMJ96_CH02449 PF01047 MarR family AMJ96_CH02450 PF06772 Bacterial low temperature requirement A protein (LtrA) AMJ96_CH02452 PF04055 Radical SAM superfamily AMJ96_CH02452 PF06463 Molybdenum Cofactor Synthesis C AMJ96_CH02453 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH02455 PF01032 FecCD transport family AMJ96_CH02456 PF00005 ABC transporter AMJ96_CH02457 PF04198 Putative sugar-binding domain AMJ96_CH02458 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH02458 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH02459 PF02780 Transketolase, C-terminal domain AMJ96_CH02459 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH02460 PF00456 Transketolase, thiamine diphosphate binding domain AMJ96_CH02461 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH02462 PF13407 Periplasmic binding protein domain AMJ96_CH02463 PF00005 ABC transporter AMJ96_CH02468 PF12804 MobA-like NTP transferase domain AMJ96_CH02469 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AMJ96_CH02470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02470 PF03466 LysR substrate binding domain AMJ96_CH02472 PF00248 Aldo/keto reductase family AMJ96_CH02473 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH02474 PF02566 OsmC-like protein AMJ96_CH02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02475 PF00672 HAMP domain AMJ96_CH02475 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02476 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02476 PF00072 Response regulator receiver domain AMJ96_CH02478 PF02683 Cytochrome C biogenesis protein transmembrane region AMJ96_CH02478 PF00578 AhpC/TSA family AMJ96_CH02478 PF17991 Thioredoxin like C-terminal domain AMJ96_CH02480 PF01389 OmpA-like transmembrane domain AMJ96_CH02480 PF00691 OmpA family AMJ96_CH02481 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02482 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02483 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02484 PF06233 Usg-like family AMJ96_CH02495 PF00296 Luciferase-like monooxygenase AMJ96_CH02497 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_CH02497 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH02500 PF00571 CBS domain AMJ96_CH02502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02502 PF03466 LysR substrate binding domain AMJ96_CH02503 PF02530 Porin subfamily AMJ96_CH02504 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH02505 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH02507 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02507 PF00989 PAS fold AMJ96_CH02508 PF01219 Prokaryotic diacylglycerol kinase AMJ96_CH02509 PF02277 Phosphoribosyltransferase AMJ96_CH02510 PF02654 Cobalamin-5-phosphate synthase AMJ96_CH02512 PF07690 Major Facilitator Superfamily AMJ96_CH02514 PF03466 LysR substrate binding domain AMJ96_CH02514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02516 PF01061 ABC-2 type transporter AMJ96_CH02517 PF00005 ABC transporter AMJ96_CH02519 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMJ96_CH02519 PF04616 Glycosyl hydrolases family 43 AMJ96_CH02520 PF00248 Aldo/keto reductase family AMJ96_CH02524 PF03459 TOBE domain AMJ96_CH02524 PF17912 MalK OB fold domain AMJ96_CH02524 PF00005 ABC transporter AMJ96_CH02525 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02527 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH02531 PF01820 D-ala D-ala ligase N-terminus AMJ96_CH02531 PF07478 D-ala D-ala ligase C-terminus AMJ96_CH02534 PF01565 FAD binding domain AMJ96_CH02534 PF08031 Berberine and berberine like AMJ96_CH02535 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH02535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH02536 PF12833 Helix-turn-helix domain AMJ96_CH02541 PF00107 Zinc-binding dehydrogenase AMJ96_CH02541 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02542 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH02542 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH02544 PF07977 FabA-like domain AMJ96_CH02545 PF00550 Phosphopantetheine attachment site AMJ96_CH02546 PF00027 Cyclic nucleotide-binding domain AMJ96_CH02546 PF13545 Crp-like helix-turn-helix domain AMJ96_CH02549 PF03186 CobD/Cbib protein AMJ96_CH02550 PF00155 Aminotransferase class I and II AMJ96_CH02551 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH02551 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMJ96_CH02552 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH02553 PF01156 Inosine-uridine preferring nucleoside hydrolase AMJ96_CH02554 PF01890 Cobalamin synthesis G C-terminus AMJ96_CH02555 PF01925 Sulfite exporter TauE/SafE AMJ96_CH02556 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMJ96_CH02557 PF02514 CobN/Magnesium Chelatase AMJ96_CH02558 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH02558 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02559 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMJ96_CH02560 PF00654 Voltage gated chloride channel AMJ96_CH02561 PF00672 HAMP domain AMJ96_CH02561 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02562 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMJ96_CH02566 PF03466 LysR substrate binding domain AMJ96_CH02566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02567 PF01810 LysE type translocator AMJ96_CH02568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02568 PF03466 LysR substrate binding domain AMJ96_CH02570 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_CH02570 PF03449 Transcription elongation factor, N-terminal AMJ96_CH02571 PF02308 MgtC family AMJ96_CH02575 PF13533 Biotin-lipoyl like AMJ96_CH02578 PF00924 Mechanosensitive ion channel AMJ96_CH02583 PF02733 Dak1 domain AMJ96_CH02585 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH02585 PF05524 PEP-utilising enzyme, N-terminal AMJ96_CH02585 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH02587 PF03610 PTS system fructose IIA component AMJ96_CH02588 PF02734 DAK2 domain AMJ96_CH02589 PF02734 DAK2 domain AMJ96_CH02589 PF02733 Dak1 domain AMJ96_CH02590 PF08402 TOBE domain AMJ96_CH02590 PF00005 ABC transporter AMJ96_CH02591 PF00005 ABC transporter AMJ96_CH02591 PF17912 MalK OB fold domain AMJ96_CH02593 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02596 PF07690 Major Facilitator Superfamily AMJ96_CH02597 PF00072 Response regulator receiver domain AMJ96_CH02597 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02599 PF00924 Mechanosensitive ion channel AMJ96_CH02599 PF12795 Mechanosensitive ion channel porin domain AMJ96_CH02599 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMJ96_CH02602 PF03358 NADPH-dependent FMN reductase AMJ96_CH02603 PF03960 ArsC family AMJ96_CH02604 PF00230 Major intrinsic protein AMJ96_CH02609 PF00072 Response regulator receiver domain AMJ96_CH02609 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02610 PF12833 Helix-turn-helix domain AMJ96_CH02610 PF01965 DJ-1/PfpI family AMJ96_CH02613 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH02613 PF17862 AAA+ lid domain AMJ96_CH02613 PF01434 Peptidase family M41 AMJ96_CH02618 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH02618 PF01068 ATP dependent DNA ligase domain AMJ96_CH02618 PF13298 DNA polymerase Ligase (LigD) AMJ96_CH02625 PF04752 ChaC-like protein AMJ96_CH02627 PF02705 K+ potassium transporter AMJ96_CH02628 PF13188 PAS domain AMJ96_CH02628 PF00563 EAL domain AMJ96_CH02628 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02628 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH02631 PF00723 Glycosyl hydrolases family 15 AMJ96_CH02632 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02632 PF01590 GAF domain AMJ96_CH02632 PF00563 EAL domain AMJ96_CH02632 PF00360 Phytochrome region AMJ96_CH02634 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02635 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02637 PF13191 AAA ATPase domain AMJ96_CH02637 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02654 PF02567 Phenazine biosynthesis-like protein AMJ96_CH02656 PF01566 Natural resistance-associated macrophage protein AMJ96_CH02659 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMJ96_CH02659 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMJ96_CH02659 PF14579 Helix-hairpin-helix motif AMJ96_CH02659 PF02811 PHP domain AMJ96_CH02660 PF04480 Protein of unknown function (DUF559) AMJ96_CH02665 PF03050 Transposase IS66 family AMJ96_CH02665 PF13007 Transposase C of IS166 homeodomain AMJ96_CH02665 PF13817 IS66 C-terminal element AMJ96_CH02665 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_CH02666 PF05717 IS66 Orf2 like protein AMJ96_CH02667 PF01527 Transposase AMJ96_CH02670 PF00561 alpha/beta hydrolase fold AMJ96_CH02671 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02671 PF13493 Domain of unknown function (DUF4118) AMJ96_CH02671 PF13426 PAS domain AMJ96_CH02671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02671 PF08447 PAS fold AMJ96_CH02671 PF00989 PAS fold AMJ96_CH02672 PF00072 Response regulator receiver domain AMJ96_CH02672 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH02677 PF13683 Integrase core domain AMJ96_CH02677 PF13276 HTH-like domain AMJ96_CH02678 PF01527 Transposase AMJ96_CH02692 PF01047 MarR family AMJ96_CH02693 PF00293 NUDIX domain AMJ96_CH02695 PF02566 OsmC-like protein AMJ96_CH02697 PF01494 FAD binding domain AMJ96_CH02701 PF00672 HAMP domain AMJ96_CH02701 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH02701 PF17200 Single Cache domain 2 AMJ96_CH02701 PF17200 Single Cache domain 2 AMJ96_CH02701 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH02701 PF00672 HAMP domain AMJ96_CH02702 PF03061 Thioesterase superfamily AMJ96_CH02707 PF05368 NmrA-like family AMJ96_CH02708 PF03466 LysR substrate binding domain AMJ96_CH02708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02710 PF00072 Response regulator receiver domain AMJ96_CH02711 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH02714 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02715 PF05656 Protein of unknown function (DUF805) AMJ96_CH02718 PF02151 UvrB/uvrC motif AMJ96_CH02718 PF17757 UvrB interaction domain AMJ96_CH02718 PF12344 Ultra-violet resistance protein B AMJ96_CH02718 PF00271 Helicase conserved C-terminal domain AMJ96_CH02718 PF04851 Type III restriction enzyme, res subunit AMJ96_CH02721 PF02586 SOS response associated peptidase (SRAP) AMJ96_CH02722 PF13508 Acetyltransferase (GNAT) domain AMJ96_CH02722 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02725 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH02726 PF01207 Dihydrouridine synthase (Dus) AMJ96_CH02727 PF13180 PDZ domain AMJ96_CH02728 PF00561 alpha/beta hydrolase fold AMJ96_CH02730 PF07886 BA14K-like protein AMJ96_CH02733 PF00672 HAMP domain AMJ96_CH02733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02733 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02734 PF00072 Response regulator receiver domain AMJ96_CH02734 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02736 PF01638 HxlR-like helix-turn-helix AMJ96_CH02739 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02741 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02744 PF05661 Protein of unknown function (DUF808) AMJ96_CH02746 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH02747 PF00764 Arginosuccinate synthase AMJ96_CH02753 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_CH02754 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02757 PF02311 AraC-like ligand binding domain AMJ96_CH02757 PF12833 Helix-turn-helix domain AMJ96_CH02762 PF00999 Sodium/hydrogen exchanger family AMJ96_CH02763 PF02705 K+ potassium transporter AMJ96_CH02766 PF17803 Bacterial cadherin-like domain AMJ96_CH02769 PF00005 ABC transporter AMJ96_CH02771 PF12833 Helix-turn-helix domain AMJ96_CH02771 PF02311 AraC-like ligand binding domain AMJ96_CH02774 PF00510 Cytochrome c oxidase subunit III AMJ96_CH02775 PF00510 Cytochrome c oxidase subunit III AMJ96_CH02776 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_CH02777 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_CH02778 PF00034 Cytochrome c AMJ96_CH02781 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH02781 PF04273 Putative phosphatase (DUF442) AMJ96_CH02786 PF00091 Tubulin/FtsZ family, GTPase domain AMJ96_CH02786 PF12327 FtsZ family, C-terminal domain AMJ96_CH02803 PF13407 Periplasmic binding protein domain AMJ96_CH02804 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02804 PF14759 Reductase C-terminal AMJ96_CH02806 PF13188 PAS domain AMJ96_CH02806 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH02806 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH02806 PF00563 EAL domain AMJ96_CH02808 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH02809 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AMJ96_CH02809 PF07228 Stage II sporulation protein E (SpoIIE) AMJ96_CH02815 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02815 PF17754 MftR C-terminal domain AMJ96_CH02817 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02817 PF00107 Zinc-binding dehydrogenase AMJ96_CH02819 PF02449 Beta-galactosidase AMJ96_CH02819 PF08533 Beta-galactosidase C-terminal domain AMJ96_CH02819 PF08532 Beta-galactosidase trimerisation domain AMJ96_CH02820 PF00005 ABC transporter AMJ96_CH02820 PF17912 MalK OB fold domain AMJ96_CH02821 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02822 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02824 PF00480 ROK family AMJ96_CH02828 PF00892 EamA-like transporter family AMJ96_CH02829 PF00155 Aminotransferase class I and II AMJ96_CH02829 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02830 PF00072 Response regulator receiver domain AMJ96_CH02830 PF00158 Sigma-54 interaction domain AMJ96_CH02830 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH02831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02831 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02839 PF00296 Luciferase-like monooxygenase AMJ96_CH02840 PF03466 LysR substrate binding domain AMJ96_CH02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02843 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02843 PF02743 Cache domain AMJ96_CH02843 PF00672 HAMP domain AMJ96_CH02848 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMJ96_CH02851 PF03466 LysR substrate binding domain AMJ96_CH02851 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02856 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02856 PF00072 Response regulator receiver domain AMJ96_CH02861 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH02862 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH02870 PF00950 ABC 3 transport family AMJ96_CH02871 PF00005 ABC transporter AMJ96_CH02872 PF01297 Zinc-uptake complex component A periplasmic AMJ96_CH02873 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH02873 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02877 PF00571 CBS domain AMJ96_CH02877 PF03471 Transporter associated domain AMJ96_CH02877 PF01595 Cyclin M transmembrane N-terminal domain AMJ96_CH02878 PF02417 Chromate transporter AMJ96_CH02879 PF09828 Chromate resistance exported protein AMJ96_CH02883 PF02567 Phenazine biosynthesis-like protein AMJ96_CH02887 PF00005 ABC transporter AMJ96_CH02887 PF08402 TOBE domain AMJ96_CH02888 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02891 PF01047 MarR family AMJ96_CH02892 PF00248 Aldo/keto reductase family AMJ96_CH02893 PF10042 Uncharacterized conserved protein (DUF2278) AMJ96_CH02894 PF00155 Aminotransferase class I and II AMJ96_CH02895 PF01063 Amino-transferase class IV AMJ96_CH02900 PF07995 Glucose / Sorbosone dehydrogenase AMJ96_CH02904 PF01658 Myo-inositol-1-phosphate synthase AMJ96_CH02908 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMJ96_CH02908 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMJ96_CH02911 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH02911 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH02912 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02913 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_CH02914 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02915 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02916 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02917 PF08402 TOBE domain AMJ96_CH02917 PF00005 ABC transporter AMJ96_CH02920 PF00535 Glycosyl transferase family 2 AMJ96_CH02921 PF06719 AraC-type transcriptional regulator N-terminus AMJ96_CH02921 PF12833 Helix-turn-helix domain AMJ96_CH02922 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02922 PF00107 Zinc-binding dehydrogenase AMJ96_CH02923 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH02923 PF03764 Elongation factor G, domain IV AMJ96_CH02923 PF00679 Elongation factor G C-terminus AMJ96_CH02925 PF07886 BA14K-like protein AMJ96_CH02926 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH02927 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH02928 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02928 PF01047 MarR family AMJ96_CH02929 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02930 PF07690 Major Facilitator Superfamily AMJ96_CH02931 PF01638 HxlR-like helix-turn-helix AMJ96_CH02933 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMJ96_CH02934 PF13411 MerR HTH family regulatory protein AMJ96_CH02935 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AMJ96_CH02935 PF13538 UvrD-like helicase C-terminal domain AMJ96_CH02935 PF14490 Helix-hairpin-helix containing domain AMJ96_CH02936 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02936 PF03466 LysR substrate binding domain AMJ96_CH02940 PF00924 Mechanosensitive ion channel AMJ96_CH02943 PF04542 Sigma-70 region 2 AMJ96_CH02943 PF08281 Sigma-70, region 4 AMJ96_CH02946 PF02211 Nitrile hydratase beta subunit AMJ96_CH02947 PF02979 Nitrile hydratase, alpha chain AMJ96_CH02950 PF01810 LysE type translocator AMJ96_CH02951 PF00248 Aldo/keto reductase family AMJ96_CH02952 PF10369 Small subunit of acetolactate synthase AMJ96_CH02952 PF01842 ACT domain AMJ96_CH02953 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH02953 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH02953 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH02956 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH02958 PF00155 Aminotransferase class I and II AMJ96_CH02958 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02961 PF17820 PDZ domain AMJ96_CH02961 PF13180 PDZ domain AMJ96_CH02962 PF01145 SPFH domain / Band 7 family AMJ96_CH02963 PF01145 SPFH domain / Band 7 family AMJ96_CH02964 PF00186 Dihydrofolate reductase AMJ96_CH02965 PF00303 Thymidylate synthase AMJ96_CH02971 PF01565 FAD binding domain AMJ96_CH02971 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH02972 PF00248 Aldo/keto reductase family AMJ96_CH02974 PF05145 Transition state regulatory protein AbrB AMJ96_CH02977 PF00691 OmpA family AMJ96_CH02977 PF13488 Glycine zipper AMJ96_CH02978 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH02978 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH02979 PF00873 AcrB/AcrD/AcrF family AMJ96_CH02980 PF13533 Biotin-lipoyl like AMJ96_CH02981 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02982 PF04293 SpoVR like protein AMJ96_CH02983 PF04285 Protein of unknown function (DUF444) AMJ96_CH02984 PF06798 PrkA serine protein kinase C-terminal domain AMJ96_CH02984 PF08298 PrkA AAA domain AMJ96_CH02986 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH02986 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH02988 PF00857 Isochorismatase family AMJ96_CH02993 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_CH02993 PF00557 Metallopeptidase family M24 AMJ96_CH02996 PF02630 SCO1/SenC AMJ96_CH02997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH02997 PF00672 HAMP domain AMJ96_CH02998 PF01584 CheW-like domain AMJ96_CH03002 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMJ96_CH03002 PF12826 Helix-hairpin-helix motif AMJ96_CH03002 PF03120 NAD-dependent DNA ligase OB-fold domain AMJ96_CH03002 PF01653 NAD-dependent DNA ligase adenylation domain AMJ96_CH03002 PF00533 BRCA1 C Terminus (BRCT) domain AMJ96_CH03004 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH03005 PF13525 Outer membrane lipoprotein AMJ96_CH03007 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMJ96_CH03008 PF00091 Tubulin/FtsZ family, GTPase domain AMJ96_CH03008 PF12327 FtsZ family, C-terminal domain AMJ96_CH03009 PF02491 SHS2 domain inserted in FTSA AMJ96_CH03010 PF03799 Cell division protein FtsQ AMJ96_CH03010 PF08478 POTRA domain, FtsQ-type AMJ96_CH03011 PF01820 D-ala D-ala ligase N-terminus AMJ96_CH03011 PF07478 D-ala D-ala ligase C-terminus AMJ96_CH03012 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03013 PF01565 FAD binding domain AMJ96_CH03013 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMJ96_CH03014 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03014 PF08245 Mur ligase middle domain AMJ96_CH03014 PF01225 Mur ligase family, catalytic domain AMJ96_CH03015 PF03033 Glycosyltransferase family 28 N-terminal domain AMJ96_CH03015 PF04101 Glycosyltransferase family 28 C-terminal domain AMJ96_CH03016 PF01098 Cell cycle protein AMJ96_CH03017 PF08245 Mur ligase middle domain AMJ96_CH03018 PF00953 Glycosyl transferase family 4 AMJ96_CH03018 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMJ96_CH03019 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03019 PF08245 Mur ligase middle domain AMJ96_CH03019 PF01225 Mur ligase family, catalytic domain AMJ96_CH03020 PF08245 Mur ligase middle domain AMJ96_CH03020 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03020 PF01225 Mur ligase family, catalytic domain AMJ96_CH03021 PF03717 Penicillin-binding Protein dimerisation domain AMJ96_CH03021 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH03023 PF01795 MraW methylase family AMJ96_CH03024 PF02381 MraZ protein, putative antitoxin-like AMJ96_CH03029 PF01510 N-acetylmuramoyl-L-alanine amidase AMJ96_CH03030 PF00226 DnaJ domain AMJ96_CH03030 PF05099 Tellurite resistance protein TerB AMJ96_CH03031 PF00365 Phosphofructokinase AMJ96_CH03032 PF01810 LysE type translocator AMJ96_CH03037 PF01183 Glycosyl hydrolases family 25 AMJ96_CH03041 PF02219 Methylenetetrahydrofolate reductase AMJ96_CH03042 PF13847 Methyltransferase domain AMJ96_CH03042 PF03551 Transcriptional regulator PadR-like family AMJ96_CH03044 PF00005 ABC transporter AMJ96_CH03044 PF12848 ABC transporter AMJ96_CH03046 PF08386 TAP-like protein AMJ96_CH03046 PF00561 alpha/beta hydrolase fold AMJ96_CH03047 PF00892 EamA-like transporter family AMJ96_CH03048 PF02515 CoA-transferase family III AMJ96_CH03049 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH03049 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH03049 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH03050 PF01042 Endoribonuclease L-PSP AMJ96_CH03053 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH03053 PF01476 LysM domain AMJ96_CH03054 PF13614 AAA domain AMJ96_CH03055 PF00465 Iron-containing alcohol dehydrogenase AMJ96_CH03056 PF00171 Aldehyde dehydrogenase family AMJ96_CH03057 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH03057 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH03060 PF01380 SIS domain AMJ96_CH03060 PF01418 Helix-turn-helix domain, rpiR family AMJ96_CH03063 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03064 PF08402 TOBE domain AMJ96_CH03064 PF00005 ABC transporter AMJ96_CH03065 PF00005 ABC transporter AMJ96_CH03065 PF08402 TOBE domain AMJ96_CH03066 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03066 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03067 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03070 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMJ96_CH03074 PF00809 Pterin binding enzyme AMJ96_CH03074 PF02607 B12 binding domain AMJ96_CH03074 PF02574 Homocysteine S-methyltransferase AMJ96_CH03074 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMJ96_CH03074 PF02310 B12 binding domain AMJ96_CH03076 PF03928 Haem-degrading AMJ96_CH03077 PF01613 Flavin reductase like domain AMJ96_CH03078 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH03079 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03080 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03082 PF08402 TOBE domain AMJ96_CH03082 PF00005 ABC transporter AMJ96_CH03090 PF00765 Autoinducer synthase AMJ96_CH03097 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH03100 PF04402 Protein of unknown function (DUF541) AMJ96_CH03103 PF01894 Uncharacterised protein family UPF0047 AMJ96_CH03109 PF02311 AraC-like ligand binding domain AMJ96_CH03109 PF12833 Helix-turn-helix domain AMJ96_CH03110 PF01636 Phosphotransferase enzyme family AMJ96_CH03114 PF00140 Sigma-70 factor, region 1.2 AMJ96_CH03114 PF03979 Sigma-70 factor, region 1.1 AMJ96_CH03114 PF04546 Sigma-70, non-essential region AMJ96_CH03114 PF04539 Sigma-70 region 3 AMJ96_CH03114 PF04545 Sigma-70, region 4 AMJ96_CH03114 PF04542 Sigma-70 region 2 AMJ96_CH03116 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH03116 PF00107 Zinc-binding dehydrogenase AMJ96_CH03117 PF00155 Aminotransferase class I and II AMJ96_CH03118 PF00570 HRDC domain AMJ96_CH03118 PF00271 Helicase conserved C-terminal domain AMJ96_CH03118 PF09382 RQC domain AMJ96_CH03118 PF16124 RecQ zinc-binding AMJ96_CH03118 PF00270 DEAD/DEAH box helicase AMJ96_CH03119 PF10410 DnaB-helicase binding domain of primase AMJ96_CH03119 PF08278 DNA primase DnaG DnaB-binding AMJ96_CH03119 PF08275 DNA primase catalytic core, N-terminal domain AMJ96_CH03119 PF01807 CHC2 zinc finger AMJ96_CH03122 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMJ96_CH03122 PF00117 Glutamine amidotransferase class-I AMJ96_CH03123 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03125 PF01554 MatE AMJ96_CH03126 PF07690 Major Facilitator Superfamily AMJ96_CH03127 PF00248 Aldo/keto reductase family AMJ96_CH03128 PF04228 Putative neutral zinc metallopeptidase AMJ96_CH03129 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH03129 PF00107 Zinc-binding dehydrogenase AMJ96_CH03130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH03130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMJ96_CH03130 PF02142 MGS-like domain AMJ96_CH03133 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_CH03133 PF03449 Transcription elongation factor, N-terminal AMJ96_CH03134 PF00534 Glycosyl transferases group 1 AMJ96_CH03135 PF00375 Sodium:dicarboxylate symporter family AMJ96_CH03136 PF02743 Cache domain AMJ96_CH03136 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03137 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03137 PF00072 Response regulator receiver domain AMJ96_CH03137 PF00158 Sigma-54 interaction domain AMJ96_CH03138 PF01037 Lrp/AsnC ligand binding domain AMJ96_CH03139 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03140 PF03466 LysR substrate binding domain AMJ96_CH03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03144 PF07690 Major Facilitator Superfamily AMJ96_CH03145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJ96_CH03146 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMJ96_CH03148 PF03466 LysR substrate binding domain AMJ96_CH03148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03149 PF04229 GrpB protein AMJ96_CH03149 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH03151 PF01699 Sodium/calcium exchanger protein AMJ96_CH03154 PF08437 Glycosyl transferase family 8 C-terminal AMJ96_CH03154 PF01501 Glycosyl transferase family 8 AMJ96_CH03160 PF07995 Glucose / Sorbosone dehydrogenase AMJ96_CH03163 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH03165 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03165 PF00672 HAMP domain AMJ96_CH03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03166 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03166 PF00072 Response regulator receiver domain AMJ96_CH03167 PF12802 MarR family AMJ96_CH03171 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH03172 PF01588 Putative tRNA binding domain AMJ96_CH03173 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_CH03173 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJ96_CH03177 PF01790 Prolipoprotein diacylglyceryl transferase AMJ96_CH03182 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMJ96_CH03182 PF14572 Phosphoribosyl synthetase-associated domain AMJ96_CH03184 PF01386 Ribosomal L25p family AMJ96_CH03184 PF14693 Ribosomal protein TL5, C-terminal domain AMJ96_CH03185 PF00563 EAL domain AMJ96_CH03185 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03185 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH03185 PF13188 PAS domain AMJ96_CH03187 PF01195 Peptidyl-tRNA hydrolase AMJ96_CH03189 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH03190 PF01926 50S ribosome-binding GTPase AMJ96_CH03190 PF06071 Protein of unknown function (DUF933) AMJ96_CH03194 PF00156 Phosphoribosyl transferase domain AMJ96_CH03195 PF02167 Cytochrome C1 family AMJ96_CH03195 PF00032 Cytochrome b(C-terminal)/b6/petD AMJ96_CH03195 PF00033 Cytochrome b/b6/petB AMJ96_CH03196 PF00033 Cytochrome b/b6/petB AMJ96_CH03196 PF00032 Cytochrome b(C-terminal)/b6/petD AMJ96_CH03197 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMJ96_CH03197 PF00355 Rieske [2Fe-2S] domain AMJ96_CH03199 PF00664 ABC transporter transmembrane region AMJ96_CH03199 PF00005 ABC transporter AMJ96_CH03201 PF00664 ABC transporter transmembrane region AMJ96_CH03201 PF00005 ABC transporter AMJ96_CH03202 PF00588 SpoU rRNA Methylase family AMJ96_CH03203 PF02690 Na+/Pi-cotransporter AMJ96_CH03205 PF01218 Coproporphyrinogen III oxidase AMJ96_CH03208 PF13735 tRNA nucleotidyltransferase domain 2 putative AMJ96_CH03208 PF01743 Poly A polymerase head domain AMJ96_CH03208 PF12627 Probable RNA and SrmB- binding site of polymerase A AMJ96_CH03209 PF00293 NUDIX domain AMJ96_CH03211 PF17863 AAA lid domain AMJ96_CH03211 PF07726 ATPase family associated with various cellular activities (AAA) AMJ96_CH03215 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03217 PF13409 Glutathione S-transferase, N-terminal domain AMJ96_CH03218 PF00293 NUDIX domain AMJ96_CH03218 PF13344 Haloacid dehalogenase-like hydrolase AMJ96_CH03223 PF08502 LeuA allosteric (dimerisation) domain AMJ96_CH03223 PF00682 HMGL-like AMJ96_CH03224 PF03594 Benzoate membrane transport protein AMJ96_CH03225 PF00574 Clp protease AMJ96_CH03226 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) AMJ96_CH03227 PF14489 QueF-like protein AMJ96_CH03228 PF16916 Dimerisation domain of Zinc Transporter AMJ96_CH03228 PF01545 Cation efflux family AMJ96_CH03231 PF04715 Anthranilate synthase component I, N terminal region AMJ96_CH03231 PF00425 chorismate binding enzyme AMJ96_CH03231 PF00117 Glutamine amidotransferase class-I AMJ96_CH03235 PF01268 Formate--tetrahydrofolate ligase AMJ96_CH03237 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH03237 PF03472 Autoinducer binding domain AMJ96_CH03241 PF00265 Thymidine kinase AMJ96_CH03243 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03244 PF00005 ABC transporter AMJ96_CH03244 PF00571 CBS domain AMJ96_CH03246 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH03247 PF00202 Aminotransferase class-III AMJ96_CH03248 PF01966 HD domain AMJ96_CH03248 PF11871 Domain of unknown function (DUF3391) AMJ96_CH03249 PF13458 Periplasmic binding protein AMJ96_CH03251 PF13382 Adenine deaminase C-terminal domain AMJ96_CH03251 PF01979 Amidohydrolase family AMJ96_CH03252 PF00128 Alpha amylase, catalytic domain AMJ96_CH03253 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH03254 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03255 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03255 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_CH03256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH03256 PF00005 ABC transporter AMJ96_CH03257 PF00005 ABC transporter AMJ96_CH03257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH03259 PF00294 pfkB family carbohydrate kinase AMJ96_CH03260 PF10931 Protein of unknown function (DUF2735) AMJ96_CH03261 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH03261 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH03263 PF01926 50S ribosome-binding GTPase AMJ96_CH03263 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMJ96_CH03267 PF05992 SbmA/BacA-like family AMJ96_CH03270 PF00557 Metallopeptidase family M24 AMJ96_CH03273 PF08281 Sigma-70, region 4 AMJ96_CH03273 PF04542 Sigma-70 region 2 AMJ96_CH03274 PF03795 YCII-related domain AMJ96_CH03275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03277 PF01799 [2Fe-2S] binding domain AMJ96_CH03277 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH03278 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMJ96_CH03278 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMJ96_CH03281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03281 PF03466 LysR substrate binding domain AMJ96_CH03284 PF01979 Amidohydrolase family AMJ96_CH03285 PF01070 FMN-dependent dehydrogenase AMJ96_CH03287 PF00782 Dual specificity phosphatase, catalytic domain AMJ96_CH03288 PF12146 Serine aminopeptidase, S33 AMJ96_CH03288 PF12147 Putative methyltransferase AMJ96_CH03289 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH03290 PF04012 PspA/IM30 family AMJ96_CH03292 PF01145 SPFH domain / Band 7 family AMJ96_CH03292 PF15975 Flotillin AMJ96_CH03294 PF00576 HIUase/Transthyretin family AMJ96_CH03295 PF04115 Ureidoglycolate lyase AMJ96_CH03300 PF01266 FAD dependent oxidoreductase AMJ96_CH03301 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03301 PF01266 FAD dependent oxidoreductase AMJ96_CH03302 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03302 PF00072 Response regulator receiver domain AMJ96_CH03302 PF01627 Hpt domain AMJ96_CH03302 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMJ96_CH03302 PF00672 HAMP domain AMJ96_CH03302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03304 PF07690 Major Facilitator Superfamily AMJ96_CH03305 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH03306 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03307 PF08713 DNA alkylation repair enzyme AMJ96_CH03308 PF00270 DEAD/DEAH box helicase AMJ96_CH03308 PF00271 Helicase conserved C-terminal domain AMJ96_CH03310 PF07690 Major Facilitator Superfamily AMJ96_CH03312 PF14403 Circularly permuted ATP-grasp type 2 AMJ96_CH03313 PF14403 Circularly permuted ATP-grasp type 2 AMJ96_CH03313 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMJ96_CH03317 PF00920 Dehydratase family AMJ96_CH03318 PF00171 Aldehyde dehydrogenase family AMJ96_CH03320 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03321 PF00005 ABC transporter AMJ96_CH03322 PF13407 Periplasmic binding protein domain AMJ96_CH03324 PF03466 LysR substrate binding domain AMJ96_CH03324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03328 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03328 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03330 PF13407 Periplasmic binding protein domain AMJ96_CH03331 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03332 PF00005 ABC transporter AMJ96_CH03340 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH03340 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH03341 PF02796 Helix-turn-helix domain of resolvase AMJ96_CH03341 PF00239 Resolvase, N terminal domain AMJ96_CH03350 PF17862 AAA+ lid domain AMJ96_CH03350 PF01434 Peptidase family M41 AMJ96_CH03350 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03353 PF06114 IrrE N-terminal-like domain AMJ96_CH03375 PF07969 Amidohydrolase family AMJ96_CH03378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03378 PF03466 LysR substrate binding domain AMJ96_CH03379 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH03380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03380 PF03466 LysR substrate binding domain AMJ96_CH03382 PF00027 Cyclic nucleotide-binding domain AMJ96_CH03382 PF07885 Ion channel AMJ96_CH03383 PF01757 Acyltransferase family AMJ96_CH03384 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03385 PF00355 Rieske [2Fe-2S] domain AMJ96_CH03386 PF05951 Bacterial protein of unknown function (DUF882) AMJ96_CH03392 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03393 PF00005 ABC transporter AMJ96_CH03396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03396 PF03466 LysR substrate binding domain AMJ96_CH03397 PF00144 Beta-lactamase AMJ96_CH03398 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03400 PF00535 Glycosyl transferase family 2 AMJ96_CH03401 PF00535 Glycosyl transferase family 2 AMJ96_CH03402 PF00005 ABC transporter AMJ96_CH03402 PF00664 ABC transporter transmembrane region AMJ96_CH03403 PF00535 Glycosyl transferase family 2 AMJ96_CH03403 PF01501 Glycosyl transferase family 8 AMJ96_CH03407 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMJ96_CH03410 PF01381 Helix-turn-helix AMJ96_CH03414 PF02018 Carbohydrate binding domain AMJ96_CH03414 PF06452 Carbohydrate family 9 binding domain-like AMJ96_CH03414 PF00331 Glycosyl hydrolase family 10 AMJ96_CH03417 PF04230 Polysaccharide pyruvyl transferase AMJ96_CH03421 PF00535 Glycosyl transferase family 2 AMJ96_CH03422 PF00535 Glycosyl transferase family 2 AMJ96_CH03425 PF01757 Acyltransferase family AMJ96_CH03429 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_CH03429 PF00529 HlyD membrane-fusion protein of T1SS AMJ96_CH03430 PF00005 ABC transporter AMJ96_CH03430 PF00664 ABC transporter transmembrane region AMJ96_CH03432 PF17803 Bacterial cadherin-like domain AMJ96_CH03434 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH03434 PF13807 G-rich domain on putative tyrosine kinase AMJ96_CH03434 PF02706 Chain length determinant protein AMJ96_CH03436 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH03439 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJ96_CH03439 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJ96_CH03439 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJ96_CH03440 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03442 PF01738 Dienelactone hydrolase family AMJ96_CH03443 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH03444 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH03445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03446 PF00483 Nucleotidyl transferase AMJ96_CH03446 PF01050 Mannose-6-phosphate isomerase AMJ96_CH03449 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH03451 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03451 PF09209 Tetracyclin repressor-like, C-terminal domain AMJ96_CH03452 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_CH03453 PF00005 ABC transporter AMJ96_CH03457 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03459 PF00893 Small Multidrug Resistance protein AMJ96_CH03461 PF01152 Bacterial-like globin AMJ96_CH03463 PF03992 Antibiotic biosynthesis monooxygenase AMJ96_CH03466 PF03544 Gram-negative bacterial TonB protein C-terminal AMJ96_CH03470 PF04542 Sigma-70 region 2 AMJ96_CH03470 PF08281 Sigma-70, region 4 AMJ96_CH03472 PF00072 Response regulator receiver domain AMJ96_CH03473 PF08447 PAS fold AMJ96_CH03473 PF13426 PAS domain AMJ96_CH03473 PF07536 HWE histidine kinase AMJ96_CH03475 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJ96_CH03475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03476 PF01180 Dihydroorotate dehydrogenase AMJ96_CH03477 PF11941 Domain of unknown function (DUF3459) AMJ96_CH03477 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03477 PF00128 Alpha amylase, catalytic domain AMJ96_CH03479 PF16657 Maltogenic Amylase, C-terminal domain AMJ96_CH03479 PF00128 Alpha amylase, catalytic domain AMJ96_CH03480 PF12833 Helix-turn-helix domain AMJ96_CH03480 PF01965 DJ-1/PfpI family AMJ96_CH03491 PF01965 DJ-1/PfpI family AMJ96_CH03498 PF01555 DNA methylase AMJ96_CH03502 PF01434 Peptidase family M41 AMJ96_CH03502 PF06480 FtsH Extracellular AMJ96_CH03502 PF17862 AAA+ lid domain AMJ96_CH03502 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03504 PF08362 YcdC-like protein, C-terminal region AMJ96_CH03504 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03505 PF01546 Peptidase family M20/M25/M40 AMJ96_CH03505 PF07687 Peptidase dimerisation domain AMJ96_CH03506 PF04480 Protein of unknown function (DUF559) AMJ96_CH03507 PF01979 Amidohydrolase family AMJ96_CH03509 PF00005 ABC transporter AMJ96_CH03510 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03511 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03514 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03515 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03516 PF01730 UreF AMJ96_CH03517 PF05194 UreE urease accessory protein, C-terminal domain AMJ96_CH03517 PF02814 UreE urease accessory protein, N-terminal domain AMJ96_CH03518 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03520 PF01979 Amidohydrolase family AMJ96_CH03520 PF00449 Urease alpha-subunit, N-terminal domain AMJ96_CH03522 PF07007 Lysozyme inhibitor LprI AMJ96_CH03523 PF00699 Urease beta subunit AMJ96_CH03524 PF06906 Protein of unknown function (DUF1272) AMJ96_CH03525 PF00547 Urease, gamma subunit AMJ96_CH03526 PF01774 UreD urease accessory protein AMJ96_CH03527 PF00005 ABC transporter AMJ96_CH03529 PF00005 ABC transporter AMJ96_CH03529 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03531 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03534 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH03534 PF00072 Response regulator receiver domain AMJ96_CH03534 PF00989 PAS fold AMJ96_CH03534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03534 PF01627 Hpt domain AMJ96_CH03534 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03535 PF00072 Response regulator receiver domain AMJ96_CH03536 PF13458 Periplasmic binding protein AMJ96_CH03538 PF00005 ABC transporter AMJ96_CH03539 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03539 PF00005 ABC transporter AMJ96_CH03540 PF11862 Domain of unknown function (DUF3382) AMJ96_CH03540 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03541 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03542 PF00459 Inositol monophosphatase family AMJ96_CH03543 PF02397 Bacterial sugar transferase AMJ96_CH03549 PF00072 Response regulator receiver domain AMJ96_CH03549 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03551 PF10090 Histidine phosphotransferase C-terminal domain AMJ96_CH03554 PF00588 SpoU rRNA Methylase family AMJ96_CH03556 PF00849 RNA pseudouridylate synthase AMJ96_CH03557 PF00140 Sigma-70 factor, region 1.2 AMJ96_CH03557 PF04542 Sigma-70 region 2 AMJ96_CH03557 PF04545 Sigma-70, region 4 AMJ96_CH03559 PF00709 Adenylosuccinate synthetase AMJ96_CH03562 PF00920 Dehydratase family AMJ96_CH03563 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03564 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_CH03566 PF03466 LysR substrate binding domain AMJ96_CH03566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03568 PF03466 LysR substrate binding domain AMJ96_CH03568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03570 PF02245 Methylpurine-DNA glycosylase (MPG) AMJ96_CH03571 PF07690 Major Facilitator Superfamily AMJ96_CH03572 PF13533 Biotin-lipoyl like AMJ96_CH03574 PF00999 Sodium/hydrogen exchanger family AMJ96_CH03575 PF13533 Biotin-lipoyl like AMJ96_CH03576 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03577 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03579 PF02082 Transcriptional regulator AMJ96_CH03584 PF17912 MalK OB fold domain AMJ96_CH03584 PF00005 ABC transporter AMJ96_CH03585 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03586 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03587 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03589 PF00480 ROK family AMJ96_CH03591 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH03592 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03593 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03595 PF00294 pfkB family carbohydrate kinase AMJ96_CH03596 PF08402 TOBE domain AMJ96_CH03596 PF00005 ABC transporter AMJ96_CH03598 PF01943 Polysaccharide biosynthesis protein AMJ96_CH03599 PF13439 Glycosyltransferase Family 4 AMJ96_CH03599 PF00534 Glycosyl transferases group 1 AMJ96_CH03600 PF00534 Glycosyl transferases group 1 AMJ96_CH03600 PF13439 Glycosyltransferase Family 4 AMJ96_CH03602 PF02397 Bacterial sugar transferase AMJ96_CH03603 PF13614 AAA domain AMJ96_CH03605 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH03611 PF01011 PQQ enzyme repeat AMJ96_CH03613 PF07732 Multicopper oxidase AMJ96_CH03613 PF00394 Multicopper oxidase AMJ96_CH03613 PF07731 Multicopper oxidase AMJ96_CH03615 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMJ96_CH03616 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJ96_CH03617 PF00361 Proton-conducting membrane transporter AMJ96_CH03620 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMJ96_CH03620 PF00361 Proton-conducting membrane transporter AMJ96_CH03621 PF00361 Proton-conducting membrane transporter AMJ96_CH03622 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMJ96_CH03623 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH03624 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMJ96_CH03625 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMJ96_CH03627 PF10531 SLBB domain AMJ96_CH03627 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH03627 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH03628 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH03628 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH03628 PF00384 Molybdopterin oxidoreductase AMJ96_CH03628 PF12838 4Fe-4S dicluster domain AMJ96_CH03628 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH03630 PF12838 4Fe-4S dicluster domain AMJ96_CH03631 PF00146 NADH dehydrogenase AMJ96_CH03641 PF00849 RNA pseudouridylate synthase AMJ96_CH03641 PF01479 S4 domain AMJ96_CH03642 PF00156 Phosphoribosyl transferase domain AMJ96_CH03643 PF03600 Citrate transporter AMJ96_CH03643 PF02080 TrkA-C domain AMJ96_CH03644 PF01259 SAICAR synthetase AMJ96_CH03645 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03646 PF00529 HlyD membrane-fusion protein of T1SS AMJ96_CH03646 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_CH03647 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03648 PF02321 Outer membrane efflux protein AMJ96_CH03649 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03651 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03652 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03653 PF00005 ABC transporter AMJ96_CH03653 PF08402 TOBE domain AMJ96_CH03655 PF13382 Adenine deaminase C-terminal domain AMJ96_CH03655 PF01979 Amidohydrolase family AMJ96_CH03659 PF00106 short chain dehydrogenase AMJ96_CH03660 PF01565 FAD binding domain AMJ96_CH03660 PF04030 D-arabinono-1,4-lactone oxidase AMJ96_CH03662 PF01040 UbiA prenyltransferase family AMJ96_CH03663 PF01546 Peptidase family M20/M25/M40 AMJ96_CH03663 PF07687 Peptidase dimerisation domain AMJ96_CH03664 PF01970 Tripartite tricarboxylate transporter TctA family AMJ96_CH03666 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03667 PF00158 Sigma-54 interaction domain AMJ96_CH03667 PF00072 Response regulator receiver domain AMJ96_CH03667 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03668 PF02743 Cache domain AMJ96_CH03668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03668 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03669 PF00174 Oxidoreductase molybdopterin binding domain AMJ96_CH03676 PF13188 PAS domain AMJ96_CH03676 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH03676 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03676 PF00563 EAL domain AMJ96_CH03677 PF00871 Acetokinase family AMJ96_CH03678 PF09364 XFP N-terminal domain AMJ96_CH03678 PF09363 XFP C-terminal domain AMJ96_CH03678 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMJ96_CH03680 PF01494 FAD binding domain AMJ96_CH03681 PF13458 Periplasmic binding protein AMJ96_CH03684 PF00005 ABC transporter AMJ96_CH03684 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03685 PF12857 TOBE-like domain AMJ96_CH03685 PF00005 ABC transporter AMJ96_CH03692 PF01842 ACT domain AMJ96_CH03692 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH03692 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH03695 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH03696 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03696 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03696 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03696 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03697 PF17862 AAA+ lid domain AMJ96_CH03697 PF01434 Peptidase family M41 AMJ96_CH03697 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03697 PF06480 FtsH Extracellular AMJ96_CH03698 PF01171 PP-loop family AMJ96_CH03700 PF00691 OmpA family AMJ96_CH03701 PF07676 WD40-like Beta Propeller Repeat AMJ96_CH03701 PF04052 TolB amino-terminal domain AMJ96_CH03703 PF02472 Biopolymer transport protein ExbD/TolR AMJ96_CH03704 PF01618 MotA/TolQ/ExbB proton channel family AMJ96_CH03705 PF03061 Thioesterase superfamily AMJ96_CH03706 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03710 PF13277 YmdB-like protein AMJ96_CH03713 PF01709 Transcriptional regulator AMJ96_CH03714 PF00296 Luciferase-like monooxygenase AMJ96_CH03715 PF00672 HAMP domain AMJ96_CH03715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03716 PF02075 Crossover junction endodeoxyribonuclease RuvC AMJ96_CH03719 PF07499 RuvA, C-terminal domain AMJ96_CH03719 PF01330 RuvA N terminal domain AMJ96_CH03720 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMJ96_CH03720 PF17864 RuvB AAA lid domain AMJ96_CH03720 PF05491 RuvB C-terminal winged helix domain AMJ96_CH03721 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03722 PF00293 NUDIX domain AMJ96_CH03723 PF05163 DinB family AMJ96_CH03725 PF03706 Lysylphosphatidylglycerol synthase TM region AMJ96_CH03725 PF09924 Uncharacterised conserved protein (DUF2156) AMJ96_CH03727 PF00924 Mechanosensitive ion channel AMJ96_CH03728 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH03728 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH03737 PF02780 Transketolase, C-terminal domain AMJ96_CH03737 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH03737 PF00456 Transketolase, thiamine diphosphate binding domain AMJ96_CH03738 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJ96_CH03738 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJ96_CH03741 PF00999 Sodium/hydrogen exchanger family AMJ96_CH03741 PF03471 Transporter associated domain AMJ96_CH03742 PF00162 Phosphoglycerate kinase AMJ96_CH03743 PF00274 Fructose-bisphosphate aldolase class-I AMJ96_CH03744 PF02567 Phenazine biosynthesis-like protein AMJ96_CH03750 PF01197 Ribosomal protein L31 AMJ96_CH03752 PF00664 ABC transporter transmembrane region AMJ96_CH03752 PF00005 ABC transporter AMJ96_CH03753 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03754 PF07411 Domain of unknown function (DUF1508) AMJ96_CH03759 PF00459 Inositol monophosphatase family AMJ96_CH03760 PF00072 Response regulator receiver domain AMJ96_CH03760 PF01339 CheB methylesterase AMJ96_CH03761 PF03705 CheR methyltransferase, all-alpha domain AMJ96_CH03761 PF01739 CheR methyltransferase, SAM binding domain AMJ96_CH03763 PF00672 HAMP domain AMJ96_CH03763 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03764 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03764 PF00672 HAMP domain AMJ96_CH03764 PF12729 Four helix bundle sensory module for signal transduction AMJ96_CH03765 PF01584 CheW-like domain AMJ96_CH03766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03766 PF02895 Signal transducing histidine kinase, homodimeric domain AMJ96_CH03766 PF09078 CheY binding AMJ96_CH03766 PF01627 Hpt domain AMJ96_CH03766 PF01584 CheW-like domain AMJ96_CH03767 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03767 PF00072 Response regulator receiver domain AMJ96_CH03773 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH03776 PF00731 AIR carboxylase AMJ96_CH03777 PF02222 ATP-grasp domain AMJ96_CH03777 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMJ96_CH03778 PF00444 Ribosomal protein L36 AMJ96_CH03782 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH03783 PF03466 LysR substrate binding domain AMJ96_CH03783 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03784 PF14552 Tautomerase enzyme AMJ96_CH03786 PF01810 LysE type translocator AMJ96_CH03787 PF02887 Pyruvate kinase, alpha/beta domain AMJ96_CH03787 PF00224 Pyruvate kinase, barrel domain AMJ96_CH03791 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) AMJ96_CH03792 PF05951 Bacterial protein of unknown function (DUF882) AMJ96_CH03793 PF00158 Sigma-54 interaction domain AMJ96_CH03793 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03793 PF00072 Response regulator receiver domain AMJ96_CH03795 PF00425 chorismate binding enzyme AMJ96_CH03795 PF04715 Anthranilate synthase component I, N terminal region AMJ96_CH03795 PF00117 Glutamine amidotransferase class-I AMJ96_CH03798 PF03435 Saccharopine dehydrogenase NADP binding domain AMJ96_CH03798 PF16653 Saccharopine dehydrogenase C-terminal domain AMJ96_CH03800 PF02872 5'-nucleotidase, C-terminal domain AMJ96_CH03800 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03801 PF00762 Ferrochelatase AMJ96_CH03802 PF16200 C-terminal region of band_7 AMJ96_CH03802 PF01145 SPFH domain / Band 7 family AMJ96_CH03804 PF01380 SIS domain AMJ96_CH03804 PF00571 CBS domain AMJ96_CH03806 PF00483 Nucleotidyl transferase AMJ96_CH03807 PF13406 Transglycosylase SLT domain AMJ96_CH03810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJ96_CH03810 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03811 PF04898 Glutamate synthase central domain AMJ96_CH03811 PF00310 Glutamine amidotransferases class-II AMJ96_CH03811 PF01645 Conserved region in glutamate synthase AMJ96_CH03811 PF01493 GXGXG motif AMJ96_CH03812 PF01212 Beta-eliminating lyase AMJ96_CH03813 PF03466 LysR substrate binding domain AMJ96_CH03813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03814 PF13593 SBF-like CPA transporter family (DUF4137) AMJ96_CH03815 PF00011 Hsp20/alpha crystallin family AMJ96_CH03817 PF00459 Inositol monophosphatase family AMJ96_CH03819 PF00072 Response regulator receiver domain AMJ96_CH03822 PF02530 Porin subfamily AMJ96_CH03829 PF01970 Tripartite tricarboxylate transporter TctA family AMJ96_CH03831 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03833 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03834 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03834 PF00072 Response regulator receiver domain AMJ96_CH03835 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03835 PF08521 Two-component sensor kinase N-terminal AMJ96_CH03837 PF04168 A predicted alpha-helical domain with a conserved ER motif. AMJ96_CH03837 PF14403 Circularly permuted ATP-grasp type 2 AMJ96_CH03838 PF01841 Transglutaminase-like superfamily AMJ96_CH03838 PF08379 Bacterial transglutaminase-like N-terminal region AMJ96_CH03840 PF00343 Carbohydrate phosphorylase AMJ96_CH03841 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03841 PF00128 Alpha amylase, catalytic domain AMJ96_CH03841 PF02806 Alpha amylase, C-terminal all-beta domain AMJ96_CH03842 PF00483 Nucleotidyl transferase AMJ96_CH03843 PF00534 Glycosyl transferases group 1 AMJ96_CH03843 PF08323 Starch synthase catalytic domain AMJ96_CH03844 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03844 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03844 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03844 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03845 PF00128 Alpha amylase, catalytic domain AMJ96_CH03845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03845 PF18390 Glycogen debranching enzyme C-terminal domain AMJ96_CH03846 PF01575 MaoC like domain AMJ96_CH03849 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH03849 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH03849 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03849 PF17806 Sarcosine oxidase A3 domain AMJ96_CH03851 PF01266 FAD dependent oxidoreductase AMJ96_CH03853 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03853 PF00072 Response regulator receiver domain AMJ96_CH03854 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03855 PF01165 Ribosomal protein S21 AMJ96_CH03857 PF07536 HWE histidine kinase AMJ96_CH03857 PF13426 PAS domain AMJ96_CH03857 PF08447 PAS fold AMJ96_CH03859 PF02233 NAD(P) transhydrogenase beta subunit AMJ96_CH03860 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMJ96_CH03861 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_CH03861 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_CH03864 PF08448 PAS fold AMJ96_CH03864 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03864 PF00563 EAL domain AMJ96_CH03864 PF08447 PAS fold AMJ96_CH03866 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJ96_CH03868 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_CH03869 PF07722 Peptidase C26 AMJ96_CH03870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH03870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH03871 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03872 PF01047 MarR family AMJ96_CH03873 PF02633 Creatinine amidohydrolase AMJ96_CH03874 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH03874 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03877 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH03877 PF06426 Serine acetyltransferase, N-terminal AMJ96_CH03878 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03878 PF08448 PAS fold AMJ96_CH03881 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJ96_CH03881 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJ96_CH03882 PF03466 LysR substrate binding domain AMJ96_CH03882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03888 PF01081 KDPG and KHG aldolase AMJ96_CH03892 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH03892 PF03707 Bacterial signalling protein N terminal repeat AMJ96_CH03892 PF00563 EAL domain AMJ96_CH03893 PF00232 Glycosyl hydrolase family 1 AMJ96_CH03895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03897 PF13407 Periplasmic binding protein domain AMJ96_CH03898 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03899 PF00005 ABC transporter AMJ96_CH03900 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03901 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH03902 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03902 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03903 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03904 PF07690 Major Facilitator Superfamily AMJ96_CH03905 PF13533 Biotin-lipoyl like AMJ96_CH03906 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03907 PF12833 Helix-turn-helix domain AMJ96_CH03908 PF03471 Transporter associated domain AMJ96_CH03908 PF03741 Integral membrane protein TerC family AMJ96_CH03909 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJ96_CH03910 PF01336 OB-fold nucleic acid binding domain AMJ96_CH03910 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH03912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03912 PF03466 LysR substrate binding domain AMJ96_CH03913 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03914 PF00005 ABC transporter AMJ96_CH03914 PF08402 TOBE domain AMJ96_CH03915 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03916 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03917 PF00171 Aldehyde dehydrogenase family AMJ96_CH03921 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH03921 PF12706 Beta-lactamase superfamily domain AMJ96_CH03922 PF08281 Sigma-70, region 4 AMJ96_CH03922 PF04542 Sigma-70 region 2 AMJ96_CH03925 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMJ96_CH03926 PF04198 Putative sugar-binding domain AMJ96_CH03926 PF13936 Helix-turn-helix domain AMJ96_CH03927 PF02805 Metal binding domain of Ada AMJ96_CH03927 PF12833 Helix-turn-helix domain AMJ96_CH03927 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMJ96_CH03927 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH03929 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJ96_CH03929 PF00633 Helix-hairpin-helix motif AMJ96_CH03929 PF10576 Iron-sulfur binding domain of endonuclease III AMJ96_CH03932 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03932 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03933 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH03934 PF08125 Mannitol dehydrogenase C-terminal domain AMJ96_CH03934 PF01232 Mannitol dehydrogenase Rossmann domain AMJ96_CH03935 PF00005 ABC transporter AMJ96_CH03935 PF08402 TOBE domain AMJ96_CH03936 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03937 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03941 PF00480 ROK family AMJ96_CH03942 PF02838 Glycosyl hydrolase family 20, domain 2 AMJ96_CH03942 PF00728 Glycosyl hydrolase family 20, catalytic domain AMJ96_CH03943 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03946 PF02566 OsmC-like protein AMJ96_CH03949 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH03950 PF00005 ABC transporter AMJ96_CH03951 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_CH03952 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH03952 PF07729 FCD domain AMJ96_CH03953 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_CH03953 PF13378 Enolase C-terminal domain-like AMJ96_CH03956 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03957 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03960 PF08450 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH03961 PF00703 Glycosyl hydrolases family 2 AMJ96_CH03961 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMJ96_CH03961 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMJ96_CH03962 PF00005 ABC transporter AMJ96_CH03962 PF17912 MalK OB fold domain AMJ96_CH03963 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03965 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH03966 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03967 PF06508 Queuosine biosynthesis protein QueC AMJ96_CH03968 PF01242 6-pyruvoyl tetrahydropterin synthase AMJ96_CH03969 PF04055 Radical SAM superfamily AMJ96_CH03970 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03971 PF00268 Ribonucleotide reductase, small chain AMJ96_CH03972 PF00317 Ribonucleotide reductase, all-alpha domain AMJ96_CH03972 PF08343 Ribonucleotide reductase N-terminal AMJ96_CH03972 PF02867 Ribonucleotide reductase, barrel domain AMJ96_CH03973 PF07972 NrdI Flavodoxin like AMJ96_CH03975 PF00403 Heavy-metal-associated domain AMJ96_CH03976 PF13411 MerR HTH family regulatory protein AMJ96_CH03977 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH03977 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03977 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJ96_CH03978 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03978 PF00158 Sigma-54 interaction domain AMJ96_CH03978 PF13426 PAS domain AMJ96_CH03979 PF00171 Aldehyde dehydrogenase family AMJ96_CH03981 PF01965 DJ-1/PfpI family AMJ96_CH03983 PF00106 short chain dehydrogenase AMJ96_CH03984 PF01699 Sodium/calcium exchanger protein AMJ96_CH03992 PF08460 Bacterial SH3 domain AMJ96_CH03992 PF01551 Peptidase family M23 AMJ96_CH03993 PF17871 AAA lid domain AMJ96_CH03993 PF02861 Clp amino terminal domain, pathogenicity island component AMJ96_CH03993 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH03993 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH03993 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03996 PF05175 Methyltransferase small domain AMJ96_CH03996 PF17827 PrmC N-terminal domain AMJ96_CH03997 PF00472 RF-1 domain AMJ96_CH03997 PF03462 PCRF domain AMJ96_CH03998 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH03998 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH03998 PF01590 GAF domain AMJ96_CH03998 PF05524 PEP-utilising enzyme, N-terminal AMJ96_CH03999 PF13840 ACT domain AMJ96_CH03999 PF00696 Amino acid kinase family AMJ96_CH03999 PF01842 ACT domain AMJ96_CH04002 PF00795 Carbon-nitrogen hydrolase AMJ96_CH04003 PF00462 Glutaredoxin AMJ96_CH04004 PF00156 Phosphoribosyl transferase domain AMJ96_CH04005 PF12697 Alpha/beta hydrolase family AMJ96_CH04005 PF08241 Methyltransferase domain AMJ96_CH04008 PF00293 NUDIX domain AMJ96_CH04010 PF01960 ArgJ family AMJ96_CH04012 PF07516 SecA Wing and Scaffold domain AMJ96_CH04012 PF02810 SEC-C motif AMJ96_CH04012 PF07517 SecA DEAD-like domain AMJ96_CH04012 PF01043 SecA preprotein cross-linking domain AMJ96_CH04015 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH04015 PF00501 AMP-binding enzyme AMJ96_CH04016 PF00248 Aldo/keto reductase family AMJ96_CH04022 PF02254 TrkA-N domain AMJ96_CH04022 PF00999 Sodium/hydrogen exchanger family AMJ96_CH04028 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJ96_CH04030 PF00106 short chain dehydrogenase AMJ96_CH04032 PF01923 Cobalamin adenosyltransferase AMJ96_CH04034 PF01012 Electron transfer flavoprotein domain AMJ96_CH04035 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_CH04035 PF01012 Electron transfer flavoprotein domain AMJ96_CH04037 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_CH04037 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_CH04038 PF08534 Redoxin AMJ96_CH04039 PF14698 Argininosuccinate lyase C-terminal AMJ96_CH04039 PF00206 Lyase AMJ96_CH04041 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJ96_CH04041 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJ96_CH04043 PF00072 Response regulator receiver domain AMJ96_CH04044 PF01171 PP-loop family AMJ96_CH04044 PF00156 Phosphoribosyl transferase domain AMJ96_CH04044 PF11734 TilS substrate C-terminal domain AMJ96_CH04046 PF00005 ABC transporter AMJ96_CH04050 PF04752 ChaC-like protein AMJ96_CH04053 PF02153 Prephenate dehydrogenase AMJ96_CH04054 PF00155 Aminotransferase class I and II AMJ96_CH04055 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH04056 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH04056 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMJ96_CH04060 PF00830 Ribosomal L28 family AMJ96_CH04064 PF06213 Cobalamin biosynthesis protein CobT AMJ96_CH04064 PF11775 Cobalamin biosynthesis protein CobT VWA domain AMJ96_CH04065 PF12556 Cobaltochelatase CobS subunit N terminal AMJ96_CH04065 PF08406 CbbQ/NirQ/NorQ C-terminal AMJ96_CH04065 PF07728 AAA domain (dynein-related subfamily) AMJ96_CH04066 PF00226 DnaJ domain AMJ96_CH04067 PF01722 BolA-like protein AMJ96_CH04068 PF03471 Transporter associated domain AMJ96_CH04068 PF01595 Cyclin M transmembrane N-terminal domain AMJ96_CH04068 PF00571 CBS domain AMJ96_CH04069 PF01761 3-dehydroquinate synthase AMJ96_CH04070 PF01202 Shikimate kinase AMJ96_CH04072 PF00589 Phage integrase family AMJ96_CH04072 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_CH04073 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMJ96_CH04074 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH04075 PF01206 Sulfurtransferase TusA AMJ96_CH04076 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH04076 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH04077 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH04077 PF07943 Penicillin-binding protein 5, C-terminal domain AMJ96_CH04078 PF07687 Peptidase dimerisation domain AMJ96_CH04078 PF01546 Peptidase family M20/M25/M40 AMJ96_CH04086 PF13288 DXP reductoisomerase C-terminal domain AMJ96_CH04086 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMJ96_CH04086 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMJ96_CH04087 PF00005 ABC transporter AMJ96_CH04087 PF17912 MalK OB fold domain AMJ96_CH04088 PF07944 Beta-L-arabinofuranosidase, GH127 AMJ96_CH04089 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04090 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04091 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH04092 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH04093 PF00155 Aminotransferase class I and II AMJ96_CH04095 PF07244 Surface antigen variable number repeat AMJ96_CH04095 PF17243 POTRA domain TamA domain 1 AMJ96_CH04095 PF01103 Surface antigen AMJ96_CH04098 PF00491 Arginase family AMJ96_CH04099 PF00202 Aminotransferase class-III AMJ96_CH04100 PF01584 CheW-like domain AMJ96_CH04101 PF07690 Major Facilitator Superfamily AMJ96_CH04103 PF02634 FdhD/NarQ family AMJ96_CH04104 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH04104 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH04104 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH04104 PF00037 4Fe-4S binding domain AMJ96_CH04104 PF00384 Molybdopterin oxidoreductase AMJ96_CH04105 PF00037 4Fe-4S binding domain AMJ96_CH04105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH04105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH04107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04107 PF03466 LysR substrate binding domain AMJ96_CH04108 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH04110 PF00376 MerR family regulatory protein AMJ96_CH04110 PF09278 MerR, DNA binding AMJ96_CH04112 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04113 PF00005 ABC transporter AMJ96_CH04114 PF09084 NMT1/THI5 like AMJ96_CH04116 PF02397 Bacterial sugar transferase AMJ96_CH04117 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMJ96_CH04119 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04119 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_CH04120 PF00231 ATP synthase AMJ96_CH04121 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04121 PF00306 ATP synthase alpha/beta chain, C terminal domain AMJ96_CH04121 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_CH04122 PF00213 ATP synthase delta (OSCP) subunit AMJ96_CH04124 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMJ96_CH04124 PF18074 Primosomal protein N C-terminal domain AMJ96_CH04124 PF00270 DEAD/DEAH box helicase AMJ96_CH04124 PF17764 3′ DNA-binding domain (3′BD) AMJ96_CH04125 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH04128 PF00589 Phage integrase family AMJ96_CH04128 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_CH04130 PF01292 Prokaryotic cytochrome b561 AMJ96_CH04131 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH04131 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH04136 PF00364 Biotin-requiring enzyme AMJ96_CH04136 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_CH04136 PF02817 e3 binding domain AMJ96_CH04138 PF16078 2-oxoglutarate dehydrogenase N-terminus AMJ96_CH04138 PF00676 Dehydrogenase E1 component AMJ96_CH04138 PF16870 2-oxoglutarate dehydrogenase C-terminal AMJ96_CH04138 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH04139 PF00549 CoA-ligase AMJ96_CH04139 PF02629 CoA binding domain AMJ96_CH04140 PF08442 ATP-grasp domain AMJ96_CH04140 PF00549 CoA-ligase AMJ96_CH04141 PF00056 lactate/malate dehydrogenase, NAD binding domain AMJ96_CH04141 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMJ96_CH04142 PF03969 AFG1-like ATPase AMJ96_CH04143 PF02974 Protease inhibitor Inh AMJ96_CH04144 PF13085 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH04144 PF13237 4Fe-4S dicluster domain AMJ96_CH04145 PF00890 FAD binding domain AMJ96_CH04145 PF02910 Fumarate reductase flavoprotein C-term AMJ96_CH04147 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMJ96_CH04151 PF03795 YCII-related domain AMJ96_CH04152 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMJ96_CH04152 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMJ96_CH04153 PF00814 Glycoprotease family AMJ96_CH04154 PF03900 Porphobilinogen deaminase, C-terminal domain AMJ96_CH04154 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMJ96_CH04159 PF00117 Glutamine amidotransferase class-I AMJ96_CH04161 PF02325 YGGT family AMJ96_CH04162 PF02594 Uncharacterised ACR, YggU family COG1872 AMJ96_CH04163 PF00719 Inorganic pyrophosphatase AMJ96_CH04166 PF01432 Peptidase family M3 AMJ96_CH04170 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH04170 PF17754 MftR C-terminal domain AMJ96_CH04171 PF00764 Arginosuccinate synthase AMJ96_CH04172 PF00106 short chain dehydrogenase AMJ96_CH04173 PF01810 LysE type translocator AMJ96_CH04174 PF00005 ABC transporter AMJ96_CH04175 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH04177 PF04055 Radical SAM superfamily AMJ96_CH04179 PF04545 Sigma-70, region 4 AMJ96_CH04179 PF04542 Sigma-70 region 2 AMJ96_CH04181 PF01329 Pterin 4 alpha carbinolamine dehydratase AMJ96_CH04182 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJ96_CH04183 PF02834 LigT like Phosphoesterase AMJ96_CH04184 PF13472 GDSL-like Lipase/Acylhydrolase family AMJ96_CH04185 PF00005 ABC transporter AMJ96_CH04187 PF01027 Inhibitor of apoptosis-promoting Bax1 AMJ96_CH04191 PF00330 Aconitase family (aconitate hydratase) AMJ96_CH04191 PF00694 Aconitase C-terminal domain AMJ96_CH04193 PF00005 ABC transporter AMJ96_CH04194 PF03379 CcmB protein AMJ96_CH04195 PF01578 Cytochrome C assembly protein AMJ96_CH04196 PF04995 Heme exporter protein D (CcmD) AMJ96_CH04197 PF08534 Redoxin AMJ96_CH04198 PF10755 Protein of unknown function (DUF2585) AMJ96_CH04199 PF04279 Intracellular septation protein A AMJ96_CH04200 PF02881 SRP54-type protein, helical bundle domain AMJ96_CH04200 PF00448 SRP54-type protein, GTPase domain AMJ96_CH04201 PF04055 Radical SAM superfamily AMJ96_CH04201 PF00919 Uncharacterized protein family UPF0004 AMJ96_CH04202 PF01678 Diaminopimelate epimerase AMJ96_CH04204 PF00448 SRP54-type protein, GTPase domain AMJ96_CH04204 PF02881 SRP54-type protein, helical bundle domain AMJ96_CH04204 PF02978 Signal peptide binding domain AMJ96_CH04205 PF02153 Prephenate dehydrogenase AMJ96_CH04205 PF01817 Chorismate mutase type II AMJ96_CH04206 PF00886 Ribosomal protein S16 AMJ96_CH04207 PF01782 RimM N-terminal domain AMJ96_CH04207 PF05239 PRC-barrel domain AMJ96_CH04208 PF01746 tRNA (Guanine-1)-methyltransferase AMJ96_CH04209 PF01245 Ribosomal protein L19 AMJ96_CH04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH04211 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04213 PF00330 Aconitase family (aconitate hydratase) AMJ96_CH04214 PF00248 Aldo/keto reductase family AMJ96_CH04216 PF00072 Response regulator receiver domain AMJ96_CH04216 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH04219 PF03548 Outer membrane lipoprotein carrier protein LolA AMJ96_CH04220 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMJ96_CH04220 PF17854 FtsK alpha domain AMJ96_CH04220 PF09397 Ftsk gamma domain AMJ96_CH04220 PF01580 FtsK/SpoIIIE family AMJ96_CH04221 PF00909 Ammonium Transporter Family AMJ96_CH04222 PF00543 Nitrogen regulatory protein P-II AMJ96_CH04224 PF01494 FAD binding domain AMJ96_CH04225 PF03966 Trm112p-like protein AMJ96_CH04227 PF00085 Thioredoxin AMJ96_CH04232 PF16363 GDP-mannose 4,6 dehydratase AMJ96_CH04233 PF00884 Sulfatase AMJ96_CH04233 PF16347 Domain of unknown function (DUF4976) AMJ96_CH04235 PF13407 Periplasmic binding protein domain AMJ96_CH04236 PF00005 ABC transporter AMJ96_CH04237 PF02653 Branched-chain amino acid transport system / permease component AMJ96_CH04238 PF01244 Membrane dipeptidase (Peptidase family M19) AMJ96_CH04239 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH04240 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04242 PF00005 ABC transporter AMJ96_CH04242 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH04243 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH04243 PF00005 ABC transporter AMJ96_CH04246 PF10091 Putative glucoamylase AMJ96_CH04246 PF06165 Glycosyltransferase family 36 AMJ96_CH04246 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMJ96_CH04249 PF00005 ABC transporter AMJ96_CH04249 PF00664 ABC transporter transmembrane region AMJ96_CH04251 PF00289 Biotin carboxylase, N-terminal domain AMJ96_CH04251 PF00364 Biotin-requiring enzyme AMJ96_CH04251 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH04251 PF00682 HMGL-like AMJ96_CH04251 PF02436 Conserved carboxylase domain AMJ96_CH04251 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH04253 PF00005 ABC transporter AMJ96_CH04254 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04255 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH04257 PF00455 DeoR C terminal sensor domain AMJ96_CH04257 PF08220 DeoR-like helix-turn-helix domain AMJ96_CH04258 PF07690 Major Facilitator Superfamily AMJ96_CH04259 PF04551 GcpE protein AMJ96_CH04260 PF00155 Aminotransferase class I and II AMJ96_CH04261 PF00348 Polyprenyl synthetase AMJ96_CH04262 PF00912 Transglycosylase AMJ96_CH04265 PF01783 Ribosomal L32p protein family AMJ96_CH04267 PF05233 PHB accumulation regulatory domain AMJ96_CH04267 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMJ96_CH04268 PF02803 Thiolase, C-terminal domain AMJ96_CH04268 PF00108 Thiolase, N-terminal domain AMJ96_CH04274 PF00037 4Fe-4S binding domain AMJ96_CH04274 PF11953 Domain of unknown function (DUF3470) AMJ96_CH04276 PF02559 CarD-like/TRCF domain AMJ96_CH04277 PF04542 Sigma-70 region 2 AMJ96_CH04277 PF00140 Sigma-70 factor, region 1.2 AMJ96_CH04277 PF04545 Sigma-70, region 4 AMJ96_CH04278 PF01435 Peptidase family M48 AMJ96_CH04279 PF07690 Major Facilitator Superfamily AMJ96_CH04283 PF00005 ABC transporter AMJ96_CH04283 PF06472 ABC transporter transmembrane region 2 AMJ96_CH04284 PF04204 Homoserine O-succinyltransferase AMJ96_CH04286 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH04286 PF07702 UTRA domain AMJ96_CH04287 PF01380 SIS domain AMJ96_CH04288 PF01979 Amidohydrolase family AMJ96_CH04289 PF13580 SIS domain AMJ96_CH04291 PF01132 Elongation factor P (EF-P) OB domain AMJ96_CH04291 PF08207 Elongation factor P (EF-P) KOW-like domain AMJ96_CH04291 PF09285 Elongation factor P, C-terminal AMJ96_CH04292 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH04293 PF12544 Lysine-2,3-aminomutase AMJ96_CH04293 PF04055 Radical SAM superfamily AMJ96_CH04294 PF00550 Phosphopantetheine attachment site AMJ96_CH04299 PF00534 Glycosyl transferases group 1 AMJ96_CH04301 PF13439 Glycosyltransferase Family 4 AMJ96_CH04301 PF00534 Glycosyl transferases group 1 AMJ96_CH04303 PF03466 LysR substrate binding domain AMJ96_CH04303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04304 PF07063 Domain of unknown function (DUF1338) AMJ96_CH04305 PF01266 FAD dependent oxidoreductase AMJ96_CH04306 PF00171 Aldehyde dehydrogenase family AMJ96_CH04308 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04309 PF00005 ABC transporter AMJ96_CH04314 PF00083 Sugar (and other) transporter AMJ96_CH04315 PF03466 LysR substrate binding domain AMJ96_CH04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04317 PF00829 Ribosomal prokaryotic L21 protein AMJ96_CH04318 PF01016 Ribosomal L27 protein AMJ96_CH04322 PF01018 GTP1/OBG AMJ96_CH04322 PF01926 50S ribosome-binding GTPase AMJ96_CH04323 PF01472 PUA domain AMJ96_CH04323 PF00696 Amino acid kinase family AMJ96_CH04324 PF00171 Aldehyde dehydrogenase family AMJ96_CH04325 PF01467 Cytidylyltransferase-like AMJ96_CH04327 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04328 PF00005 ABC transporter AMJ96_CH04328 PF03459 TOBE domain AMJ96_CH04331 PF02590 Predicted SPOUT methyltransferase AMJ96_CH04333 PF03572 Peptidase family S41 AMJ96_CH04333 PF13180 PDZ domain AMJ96_CH04335 PF00293 NUDIX domain AMJ96_CH04336 PF00210 Ferritin-like domain AMJ96_CH04338 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMJ96_CH04338 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMJ96_CH04338 PF14579 Helix-hairpin-helix motif AMJ96_CH04338 PF01336 OB-fold nucleic acid binding domain AMJ96_CH04338 PF02811 PHP domain AMJ96_CH04343 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH04346 PF00694 Aconitase C-terminal domain AMJ96_CH04347 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH04348 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_CH04349 PF01569 PAP2 superfamily AMJ96_CH04350 PF00083 Sugar (and other) transporter AMJ96_CH04352 PF00005 ABC transporter AMJ96_CH04354 PF00245 Alkaline phosphatase AMJ96_CH04355 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMJ96_CH04355 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJ96_CH04357 PF17151 Periplasmic sensor domain AMJ96_CH04357 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_CH04358 PF00484 Carbonic anhydrase AMJ96_CH04359 PF08543 Phosphomethylpyrimidine kinase AMJ96_CH04361 PF05088 Bacterial NAD-glutamate dehydrogenase AMJ96_CH04362 PF11700 Vacuole effluxer Atg22 like AMJ96_CH04363 PF01808 AICARFT/IMPCHase bienzyme AMJ96_CH04363 PF02142 MGS-like domain AMJ96_CH04364 PF07940 Heparinase II/III-like protein AMJ96_CH04365 PF01189 16S rRNA methyltransferase RsmB/F AMJ96_CH04365 PF01029 NusB family AMJ96_CH04366 PF01435 Peptidase family M48 AMJ96_CH04368 PF16177 Acetyl-coenzyme A synthetase N-terminus AMJ96_CH04368 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH04368 PF00501 AMP-binding enzyme AMJ96_CH04371 PF01168 Alanine racemase, N-terminal domain AMJ96_CH04372 PF08264 Anticodon-binding domain of tRNA AMJ96_CH04372 PF09334 tRNA synthetases class I (M) AMJ96_CH04372 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH04372 PF13603 Leucyl-tRNA synthetase, Domain 2 AMJ96_CH04375 PF17762 HTH domain found in ParB protein AMJ96_CH04375 PF02195 ParB-like nuclease domain AMJ96_CH04376 PF13614 AAA domain AMJ96_CH04377 PF02527 rRNA small subunit methyltransferase G AMJ96_CH04378 PF13932 GidA associated domain AMJ96_CH04378 PF01134 Glucose inhibited division protein A AMJ96_CH04379 PF01926 50S ribosome-binding GTPase AMJ96_CH04379 PF10396 GTP-binding protein TrmE N-terminus AMJ96_CH04379 PF12631 MnmE helical domain AMJ96_CH04380 PF07497 Rho termination factor, RNA-binding domain AMJ96_CH04380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04380 PF07498 Rho termination factor, N-terminal domain AMJ96_CH04382 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMJ96_PA00001 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AMJ96_PA00003 PF00296 Luciferase-like monooxygenase AMJ96_PA00004 PF00296 Luciferase-like monooxygenase AMJ96_PA00005 PF01546 Peptidase family M20/M25/M40 AMJ96_PA00005 PF07687 Peptidase dimerisation domain AMJ96_PA00007 PF00005 ABC transporter AMJ96_PA00010 PF00296 Luciferase-like monooxygenase AMJ96_PA00012 PF03358 NADPH-dependent FMN reductase AMJ96_PA00019 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00020 PF00005 ABC transporter AMJ96_PA00021 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_PA00023 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PA00023 PF07729 FCD domain AMJ96_PA00024 PF00293 NUDIX domain AMJ96_PA00026 PF12697 Alpha/beta hydrolase family AMJ96_PA00027 PF01613 Flavin reductase like domain AMJ96_PA00028 PF00296 Luciferase-like monooxygenase AMJ96_PA00029 PF00171 Aldehyde dehydrogenase family AMJ96_PA00032 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00033 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00034 PF00005 ABC transporter AMJ96_PA00034 PF08402 TOBE domain AMJ96_PA00035 PF00171 Aldehyde dehydrogenase family AMJ96_PA00038 PF16363 GDP-mannose 4,6 dehydratase AMJ96_PA00041 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PA00045 PF13580 SIS domain AMJ96_PA00048 PF00005 ABC transporter AMJ96_PA00048 PF08402 TOBE domain AMJ96_PA00053 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00054 PF00701 Dihydrodipicolinate synthetase family AMJ96_PA00055 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PA00055 PF07729 FCD domain AMJ96_PA00056 PF00557 Metallopeptidase family M24 AMJ96_PA00056 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_PA00058 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00059 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00060 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00061 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PA00061 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00062 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00062 PF00005 ABC transporter AMJ96_PA00063 PF00005 ABC transporter AMJ96_PA00063 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00067 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_PA00067 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PA00069 PF00920 Dehydratase family AMJ96_PA00070 PF03737 Aldolase/RraA AMJ96_PA00071 PF00873 AcrB/AcrD/AcrF family AMJ96_PA00072 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_PA00074 PF00106 short chain dehydrogenase AMJ96_PA00076 PF00072 Response regulator receiver domain AMJ96_PA00076 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00077 PF16527 Two-component sensor protein CpxA, periplasmic domain AMJ96_PA00077 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00077 PF00672 HAMP domain AMJ96_PA00077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00078 PF02321 Outer membrane efflux protein AMJ96_PA00079 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_PA00080 PF01575 MaoC like domain AMJ96_PA00081 PF00289 Biotin carboxylase, N-terminal domain AMJ96_PA00081 PF00364 Biotin-requiring enzyme AMJ96_PA00081 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_PA00081 PF02785 Biotin carboxylase C-terminal domain AMJ96_PA00082 PF01039 Carboxyl transferase domain AMJ96_PA00083 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00083 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00083 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00085 PF00106 short chain dehydrogenase AMJ96_PA00086 PF00108 Thiolase, N-terminal domain AMJ96_PA00086 PF02803 Thiolase, C-terminal domain AMJ96_PA00087 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00087 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00087 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00088 PF00676 Dehydrogenase E1 component AMJ96_PA00088 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal AMJ96_PA00089 PF02779 Transketolase, pyrimidine binding domain AMJ96_PA00089 PF02780 Transketolase, C-terminal domain AMJ96_PA00090 PF00364 Biotin-requiring enzyme AMJ96_PA00090 PF02817 e3 binding domain AMJ96_PA00090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_PA00091 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PA00091 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_PA00095 PF16200 C-terminal region of band_7 AMJ96_PA00095 PF01145 SPFH domain / Band 7 family AMJ96_PA00097 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PA00097 PF00563 EAL domain AMJ96_PA00097 PF03707 Bacterial signalling protein N terminal repeat AMJ96_PA00098 PF00005 ABC transporter AMJ96_PA00098 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00099 PF00005 ABC transporter AMJ96_PA00099 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00100 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PA00100 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00101 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00102 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00103 PF01614 Bacterial transcriptional regulator AMJ96_PA00103 PF09339 IclR helix-turn-helix domain AMJ96_PA00104 PF03737 Aldolase/RraA AMJ96_PA00105 PF00924 Mechanosensitive ion channel AMJ96_PA00105 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMJ96_PA00105 PF12795 Mechanosensitive ion channel porin domain AMJ96_PA00107 PF13416 Bacterial extracellular solute-binding protein AMJ96_PA00108 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00109 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00110 PF08402 TOBE domain AMJ96_PA00110 PF00005 ABC transporter AMJ96_PA00112 PF00455 DeoR C terminal sensor domain AMJ96_PA00112 PF08220 DeoR-like helix-turn-helix domain AMJ96_PA00117 PF00664 ABC transporter transmembrane region AMJ96_PA00117 PF00005 ABC transporter AMJ96_PA00118 PF00155 Aminotransferase class I and II AMJ96_PA00119 PF00571 CBS domain AMJ96_PA00120 PF01578 Cytochrome C assembly protein AMJ96_PA00120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMJ96_PA00121 PF03100 CcmE AMJ96_PA00124 PF03597 Cytochrome oxidase maturation protein cbb3-type AMJ96_PA00125 PF00403 Heavy-metal-associated domain AMJ96_PA00126 PF05751 FixH AMJ96_PA00127 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJ96_PA00127 PF12801 4Fe-4S binding domain AMJ96_PA00127 PF13746 4Fe-4S dicluster domain AMJ96_PA00129 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJ96_PA00129 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJ96_PA00132 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PA00133 PF13545 Crp-like helix-turn-helix domain AMJ96_PA00133 PF00027 Cyclic nucleotide-binding domain AMJ96_PA00134 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00134 PF00072 Response regulator receiver domain AMJ96_PA00134 PF08448 PAS fold AMJ96_PA00134 PF13188 PAS domain AMJ96_PA00135 PF00127 Copper binding proteins, plastocyanin/azurin family AMJ96_PA00141 PF00510 Cytochrome c oxidase subunit III AMJ96_PA00143 PF00034 Cytochrome c AMJ96_PA00144 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PA00145 PF08406 CbbQ/NirQ/NorQ C-terminal AMJ96_PA00145 PF07728 AAA domain (dynein-related subfamily) AMJ96_PA00146 PF00092 von Willebrand factor type A domain AMJ96_PA00147 PF04055 Radical SAM superfamily AMJ96_PA00151 PF01883 Iron-sulfur cluster assembly protein AMJ96_PA00153 PF00394 Multicopper oxidase AMJ96_PA00153 PF07732 Multicopper oxidase AMJ96_PA00155 PF13545 Crp-like helix-turn-helix domain AMJ96_PA00158 PF00072 Response regulator receiver domain AMJ96_PA00158 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00159 PF00294 pfkB family carbohydrate kinase AMJ96_PA00161 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00162 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00165 PF03459 TOBE domain AMJ96_PA00165 PF17912 MalK OB fold domain AMJ96_PA00165 PF00005 ABC transporter AMJ96_PA00168 PF12900 Pyridoxamine 5'-phosphate oxidase AMJ96_PA00172 PF13194 Domain of unknown function (DUF4010) AMJ96_PA00175 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PA00175 PF03707 Bacterial signalling protein N terminal repeat AMJ96_PA00175 PF13188 PAS domain AMJ96_PA00175 PF00563 EAL domain AMJ96_PA00176 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00177 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_PA00177 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00180 PF03466 LysR substrate binding domain AMJ96_PA00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00181 PF01965 DJ-1/PfpI family AMJ96_PA00181 PF12833 Helix-turn-helix domain AMJ96_PA00182 PF05853 beta-keto acid cleavage enzyme AMJ96_PA00183 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_PA00183 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00184 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00184 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00184 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00185 PF13380 CoA binding domain AMJ96_PA00185 PF13607 Succinyl-CoA ligase like flavodoxin domain AMJ96_PA00185 PF00583 Acetyltransferase (GNAT) family AMJ96_PA00186 PF00378 Enoyl-CoA hydratase/isomerase AMJ96_PA00187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00188 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00189 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00189 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PA00190 PF00005 ABC transporter AMJ96_PA00190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00192 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00194 PF07859 alpha/beta hydrolase fold AMJ96_PA00196 PF00092 von Willebrand factor type A domain AMJ96_PA00196 PF12034 Domain of unknown function (DUF3520) AMJ96_PA00196 PF12450 von Willebrand factor AMJ96_PA00198 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00198 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_PA00199 PF00107 Zinc-binding dehydrogenase AMJ96_PA00199 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PA00200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_PA00203 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PA00203 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PA00204 PF00005 ABC transporter AMJ96_PA00205 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00208 PF00296 Luciferase-like monooxygenase AMJ96_PA00210 PF02203 Tar ligand binding domain homologue AMJ96_PA00210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PA00210 PF00672 HAMP domain AMJ96_PA00211 PF00474 Sodium:solute symporter family AMJ96_PA00213 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PA00213 PF00072 Response regulator receiver domain AMJ96_PA00214 PF07730 Histidine kinase AMJ96_PA00214 PF17200 Single Cache domain 2 AMJ96_PA00215 PF01037 Lrp/AsnC ligand binding domain AMJ96_PA00216 PF00005 ABC transporter AMJ96_PA00217 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00218 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00219 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00220 PF02574 Homocysteine S-methyltransferase AMJ96_PA00222 PF00654 Voltage gated chloride channel AMJ96_PA00224 PF01850 PIN domain AMJ96_PA00225 PF00005 ABC transporter AMJ96_PA00227 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00230 PF13407 Periplasmic binding protein domain AMJ96_PA00231 PF00005 ABC transporter AMJ96_PA00232 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00233 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00236 PF01042 Endoribonuclease L-PSP AMJ96_PA00239 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PA00240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PA00241 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PA00241 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PA00242 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00243 PF00005 ABC transporter AMJ96_PA00244 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00245 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00247 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00248 PF03737 Aldolase/RraA AMJ96_PA00249 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00250 PF00005 ABC transporter AMJ96_PA00251 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00252 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00253 PF00106 short chain dehydrogenase AMJ96_PA00254 PF03466 LysR substrate binding domain AMJ96_PA00254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00256 PF03746 LamB/YcsF family AMJ96_PA00257 PF02626 Carboxyltransferase domain, subdomain A and B AMJ96_PA00260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_PA00260 PF00289 Biotin carboxylase, N-terminal domain AMJ96_PA00260 PF02785 Biotin carboxylase C-terminal domain AMJ96_PA00261 PF00364 Biotin-requiring enzyme AMJ96_PA00264 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00266 PF01547 Bacterial extracellular solute-binding protein AMJ96_PA00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00269 PF17912 MalK OB fold domain AMJ96_PA00269 PF00005 ABC transporter AMJ96_PA00270 PF00732 GMC oxidoreductase AMJ96_PA00270 PF05199 GMC oxidoreductase AMJ96_PA00271 PF03976 Polyphosphate kinase 2 (PPK2) AMJ96_PA00272 PF00248 Aldo/keto reductase family AMJ96_PA00273 PF03466 LysR substrate binding domain AMJ96_PA00273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00277 PF01165 Ribosomal protein S21 AMJ96_PA00278 PF17803 Bacterial cadherin-like domain AMJ96_PA00281 PF00072 Response regulator receiver domain AMJ96_PA00281 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00282 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00283 PF17938 Tetracyclin repressor-like, C-terminal domain AMJ96_PA00283 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PA00284 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJ96_PA00285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJ96_PA00286 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_PA00287 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_PA00287 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMJ96_PA00288 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_PA00289 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00290 PF16912 Glucose dehydrogenase C-terminus AMJ96_PA00290 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00293 PF00294 pfkB family carbohydrate kinase AMJ96_PA00294 PF08013 Tagatose 6 phosphate kinase AMJ96_PA00296 PF00106 short chain dehydrogenase AMJ96_PA00297 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PA00298 PF00005 ABC transporter AMJ96_PA00300 PF12833 Helix-turn-helix domain AMJ96_PA00301 PF02358 Trehalose-phosphatase AMJ96_PA00303 PF13614 AAA domain AMJ96_PA00304 PF02195 ParB-like nuclease domain AMJ96_PA00304 PF07506 RepB plasmid partitioning protein AMJ96_PA00305 PF11800 Replication protein C C-terminal region AMJ96_PA00305 PF03428 Replication protein C N-terminal domain AMJ96_PB00003 PF13683 Integrase core domain AMJ96_PB00003 PF13276 HTH-like domain AMJ96_PB00006 PF00239 Resolvase, N terminal domain AMJ96_PB00008 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_PB00008 PF00589 Phage integrase family AMJ96_PB00018 PF06508 Queuosine biosynthesis protein QueC AMJ96_PB00022 PF13676 TIR domain AMJ96_PB00024 PF02463 RecF/RecN/SMC N terminal domain AMJ96_PB00030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PB00031 PF01381 Helix-turn-helix AMJ96_PB00035 PF01527 Transposase AMJ96_PB00044 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00045 PF00595 PDZ domain AMJ96_PB00047 PF00072 Response regulator receiver domain AMJ96_PB00047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PB00047 PF13426 PAS domain AMJ96_PB00048 PF00195 Chalcone and stilbene synthases, N-terminal domain AMJ96_PB00048 PF02797 Chalcone and stilbene synthases, C-terminal domain AMJ96_PB00051 PF00872 Transposase, Mutator family AMJ96_PB00053 PF00753 Metallo-beta-lactamase superfamily AMJ96_PB00057 PF01382 Avidin family AMJ96_PB00061 PF07732 Multicopper oxidase AMJ96_PB00061 PF07731 Multicopper oxidase AMJ96_PB00066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00066 PF03466 LysR substrate binding domain AMJ96_PB00068 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PB00068 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMJ96_PB00068 PF07691 PA14 domain AMJ96_PB00068 PF14310 Fibronectin type III-like domain AMJ96_PB00070 PF06339 Ectoine synthase AMJ96_PB00072 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_PB00072 PF00589 Phage integrase family AMJ96_PB00073 PF00589 Phage integrase family AMJ96_PB00074 PF01820 D-ala D-ala ligase N-terminus AMJ96_PB00074 PF07478 D-ala D-ala ligase C-terminus AMJ96_PB00075 PF01678 Diaminopimelate epimerase AMJ96_PB00076 PF01527 Transposase AMJ96_PB00077 PF05717 IS66 Orf2 like protein AMJ96_PB00078 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_PB00078 PF03050 Transposase IS66 family AMJ96_PB00078 PF13007 Transposase C of IS166 homeodomain AMJ96_PB00078 PF13817 IS66 C-terminal element AMJ96_PB00079 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_PB00079 PF18603 L-amino acid ligase C-terminal domain 2 AMJ96_PB00085 PF08447 PAS fold AMJ96_PB00085 PF13426 PAS domain AMJ96_PB00085 PF07536 HWE histidine kinase AMJ96_PB00086 PF13426 PAS domain AMJ96_PB00086 PF07536 HWE histidine kinase AMJ96_PB00098 PF01514 Secretory protein of YscJ/FliF family AMJ96_PB00101 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_PB00101 PF18269 T3SS EscN ATPase C-terminal domain AMJ96_PB00101 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_PB00102 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMJ96_PB00103 PF00813 FliP family AMJ96_PB00104 PF01313 Bacterial export proteins, family 3 AMJ96_PB00105 PF01311 Bacterial export proteins, family 1 AMJ96_PB00106 PF01312 FlhB HrpN YscU SpaS Family AMJ96_PB00107 PF03211 Pectate lyase AMJ96_PB00108 PF00771 FHIPEP family AMJ96_PB00113 PF01381 Helix-turn-helix AMJ96_PB00118 PF15608 PELOTA RNA binding domain AMJ96_PB00118 PF11202 Phosphoribosyl transferase (PRTase) AMJ96_PB00120 PF13683 Integrase core domain AMJ96_PB00120 PF13276 HTH-like domain AMJ96_PB00121 PF01527 Transposase AMJ96_PB00123 PF00264 Common central domain of tyrosinase AMJ96_PB00128 PF07840 FadR C-terminal domain AMJ96_PB00128 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PB00129 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PB00129 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PB00132 PF00561 alpha/beta hydrolase fold AMJ96_PB00133 PF13407 Periplasmic binding protein domain AMJ96_PB00134 PF00005 ABC transporter AMJ96_PB00135 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PB00136 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PB00137 PF00171 Aldehyde dehydrogenase family AMJ96_PB00139 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AMJ96_PB00139 PF01348 Type II intron maturase AMJ96_PB00142 PF00672 HAMP domain AMJ96_PB00142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00146 PF14525 AraC-binding-like domain AMJ96_PB00146 PF12833 Helix-turn-helix domain AMJ96_PB00148 PF00672 HAMP domain AMJ96_PB00148 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00149 PF13407 Periplasmic binding protein domain AMJ96_PB00150 PF13007 Transposase C of IS166 homeodomain AMJ96_PB00150 PF13817 IS66 C-terminal element AMJ96_PB00150 PF03050 Transposase IS66 family AMJ96_PB00150 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_PB00151 PF05717 IS66 Orf2 like protein AMJ96_PB00152 PF01527 Transposase AMJ96_PB00153 PF03707 Bacterial signalling protein N terminal repeat AMJ96_PB00153 PF00563 EAL domain AMJ96_PB00153 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PB00155 PF00753 Metallo-beta-lactamase superfamily AMJ96_PB00155 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMJ96_PB00156 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00156 PF00107 Zinc-binding dehydrogenase AMJ96_PB00158 PF07840 FadR C-terminal domain AMJ96_PB00158 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PB00162 PF01613 Flavin reductase like domain AMJ96_PB00163 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PB00164 PF00296 Luciferase-like monooxygenase AMJ96_PB00165 PF13407 Periplasmic binding protein domain AMJ96_PB00166 PF00155 Aminotransferase class I and II AMJ96_PB00168 PF03358 NADPH-dependent FMN reductase AMJ96_PB00169 PF00925 GTP cyclohydrolase II AMJ96_PB00169 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMJ96_PB00170 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00170 PF00107 Zinc-binding dehydrogenase AMJ96_PB00172 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_PB00173 PF13407 Periplasmic binding protein domain AMJ96_PB00174 PF00005 ABC transporter AMJ96_PB00175 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PB00176 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PB00177 PF00107 Zinc-binding dehydrogenase AMJ96_PB00177 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00179 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PB00181 PF00672 HAMP domain AMJ96_PB00181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00182 PF00563 EAL domain AMJ96_PB00182 PF03707 Bacterial signalling protein N terminal repeat AMJ96_PB00182 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PB00189 PF04956 TrbC/VIRB2 family AMJ96_PB00190 PF05101 Type IV secretory pathway, VirB3-like protein AMJ96_PB00191 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMJ96_PB00194 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMJ96_PB00196 PF04335 VirB8 protein AMJ96_PB00197 PF03524 Conjugal transfer protein AMJ96_PB00198 PF03743 Bacterial conjugation TrbI-like protein AMJ96_PB00199 PF00437 Type II/IV secretion system protein AMJ96_PB00208 PF05406 WGR domain AMJ96_PB00210 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PB00211 PF02534 Type IV secretory system Conjugative DNA transfer AMJ96_PB00212 PF06412 Conjugal transfer protein TraD AMJ96_PB00214 PF03389 MobA/MobL family AMJ96_PB00214 PF17841 BID domain of Bartonella effector protein (Bep) AMJ96_PB00214 PF01443 Viral (Superfamily 1) RNA helicase AMJ96_PB00221 PF01381 Helix-turn-helix AMJ96_PB00223 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PB00224 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PB00225 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PB00226 PF03466 LysR substrate binding domain AMJ96_PB00226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00232 PF09361 Phasin protein AMJ96_PB00239 PF04717 Type VI secretion system, phage-baseplate injector AMJ96_PB00255 PF00691 OmpA family AMJ96_PB00260 PF02543 Carbamoyltransferase N-terminus AMJ96_PB00261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00261 PF03466 LysR substrate binding domain AMJ96_PB00262 PF02579 Dinitrogenase iron-molybdenum cofactor AMJ96_PB00262 PF04055 Radical SAM superfamily AMJ96_PB00264 PF13577 SnoaL-like domain AMJ96_PB00266 PF00296 Luciferase-like monooxygenase AMJ96_PB00268 PF01527 Transposase AMJ96_PB00269 PF13683 Integrase core domain AMJ96_PB00269 PF13276 HTH-like domain AMJ96_PB00270 PF02371 Transposase IS116/IS110/IS902 family AMJ96_PB00270 PF01548 Transposase AMJ96_PB00272 PF00665 Integrase core domain AMJ96_PB00272 PF13936 Helix-turn-helix domain AMJ96_PB00275 PF07690 Major Facilitator Superfamily AMJ96_PB00276 PF00484 Carbonic anhydrase AMJ96_PB00278 PF05717 IS66 Orf2 like protein AMJ96_PB00283 PF03270 Protein of unknown function, DUF269 AMJ96_PB00284 PF02579 Dinitrogenase iron-molybdenum cofactor AMJ96_PB00285 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00286 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00287 PF11844 Domain of unknown function (DUF3364) AMJ96_PB00287 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00288 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00289 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00291 PF13577 SnoaL-like domain AMJ96_PB00293 PF00067 Cytochrome P450 AMJ96_PB00295 PF00027 Cyclic nucleotide-binding domain AMJ96_PB00295 PF13545 Crp-like helix-turn-helix domain AMJ96_PB00297 PF08534 Redoxin AMJ96_PB00298 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMJ96_PB00298 PF04552 Sigma-54, DNA binding domain AMJ96_PB00298 PF04963 Sigma-54 factor, core binding domain AMJ96_PB00300 PF01521 Iron-sulphur cluster biosynthesis AMJ96_PB00302 PF00266 Aminotransferase class-V AMJ96_PB00303 PF03206 Nitrogen fixation protein NifW AMJ96_PB00304 PF01012 Electron transfer flavoprotein domain AMJ96_PB00305 PF01012 Electron transfer flavoprotein domain AMJ96_PB00305 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_PB00308 PF02954 Bacterial regulatory protein, Fis family AMJ96_PB00308 PF01590 GAF domain AMJ96_PB00308 PF00158 Sigma-54 interaction domain AMJ96_PB00309 PF04055 Radical SAM superfamily AMJ96_PB00309 PF02579 Dinitrogenase iron-molybdenum cofactor AMJ96_PB00310 PF12838 4Fe-4S dicluster domain AMJ96_PB00311 PF04319 NifZ domain AMJ96_PB00312 PF06988 NifT/FixU protein AMJ96_PB00314 PF00155 Aminotransferase class I and II AMJ96_PB00315 PF00009 Elongation factor Tu GTP binding domain AMJ96_PB00323 PF03050 Transposase IS66 family AMJ96_PB00323 PF13817 IS66 C-terminal element AMJ96_PB00323 PF13007 Transposase C of IS166 homeodomain AMJ96_PB00323 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_PB00325 PF13408 Recombinase zinc beta ribbon domain AMJ96_PB00325 PF00239 Resolvase, N terminal domain AMJ96_PB00325 PF07508 Recombinase AMJ96_PB00326 PF03050 Transposase IS66 family AMJ96_PB00326 PF13817 IS66 C-terminal element AMJ96_PB00326 PF13007 Transposase C of IS166 homeodomain AMJ96_PB00326 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_PB00327 PF05717 IS66 Orf2 like protein AMJ96_PB00328 PF01527 Transposase AMJ96_PB00330 PF00348 Polyprenyl synthetase AMJ96_PB00331 PF01070 FMN-dependent dehydrogenase AMJ96_PB00334 PF00067 Cytochrome P450 AMJ96_PB00336 PF00067 Cytochrome P450 AMJ96_PB00337 PF00067 Cytochrome P450 AMJ96_PB00338 PF00067 Cytochrome P450 AMJ96_PB00339 PF01527 Transposase AMJ96_PB00340 PF13683 Integrase core domain AMJ96_PB00340 PF13276 HTH-like domain AMJ96_PB00341 PF11089 Exopolysaccharide production repressor AMJ96_PB00343 PF05082 Rop-like AMJ96_PB00344 PF04891 NifQ AMJ96_PB00345 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00346 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00348 PF04055 Radical SAM superfamily AMJ96_PB00351 PF01527 Transposase AMJ96_PB00352 PF05050 Methyltransferase FkbM domain AMJ96_PB00353 PF01527 Transposase AMJ96_PB00354 PF01695 IstB-like ATP binding protein AMJ96_PB00356 PF03466 LysR substrate binding domain AMJ96_PB00356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00358 PF01061 ABC-2 type transporter AMJ96_PB00359 PF00005 ABC transporter AMJ96_PB00360 PF05401 Nodulation protein S (NodS) AMJ96_PB00361 PF00535 Glycosyl transferase family 2 AMJ96_PB00362 PF01522 Polysaccharide deacetylase AMJ96_PB00363 PF13340 Putative transposase of IS4/5 family (DUF4096) AMJ96_PB00369 PF03597 Cytochrome oxidase maturation protein cbb3-type AMJ96_PB00370 PF00403 Heavy-metal-associated domain AMJ96_PB00371 PF05751 FixH AMJ96_PB00372 PF12801 4Fe-4S binding domain AMJ96_PB00372 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJ96_PB00372 PF13746 4Fe-4S dicluster domain AMJ96_PB00374 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJ96_PB00374 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJ96_PB00377 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PB00379 PF00127 Copper binding proteins, plastocyanin/azurin family AMJ96_PB00381 PF04055 Radical SAM superfamily AMJ96_PB00383 PF09361 Phasin protein AMJ96_PB00385 PF13237 4Fe-4S dicluster domain AMJ96_PB00386 PF05082 Rop-like AMJ96_PB00387 PF03270 Protein of unknown function, DUF269 AMJ96_PB00388 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00389 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00389 PF11844 Domain of unknown function (DUF3364) AMJ96_PB00390 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00391 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00393 PF16363 GDP-mannose 4,6 dehydratase AMJ96_PB00395 PF02474 Nodulation protein A (NodA) AMJ96_PB00398 PF13276 HTH-like domain AMJ96_PB00398 PF13683 Integrase core domain AMJ96_PB00399 PF01527 Transposase AMJ96_PB00401 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMJ96_PB00404 PF09334 tRNA synthetases class I (M) AMJ96_PB00404 PF08264 Anticodon-binding domain of tRNA AMJ96_PB00404 PF01588 Putative tRNA binding domain AMJ96_PB00406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00406 PF03466 LysR substrate binding domain AMJ96_PB00408 PF03466 LysR substrate binding domain AMJ96_PB00408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00409 PF00296 Luciferase-like monooxygenase AMJ96_PB00411 PF01527 Transposase AMJ96_PB00416 PF13276 HTH-like domain AMJ96_PB00416 PF13683 Integrase core domain AMJ96_PB00417 PF01527 Transposase AMJ96_PB00420 PF03412 Peptidase C39 family AMJ96_PB00420 PF00005 ABC transporter AMJ96_PB00420 PF00664 ABC transporter transmembrane region AMJ96_PB00421 PF13683 Integrase core domain AMJ96_PB00421 PF13276 HTH-like domain AMJ96_PB00422 PF03270 Protein of unknown function, DUF269 AMJ96_PB00423 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00426 PF00230 Major intrinsic protein AMJ96_PB00427 PF09361 Phasin protein AMJ96_PB00428 PF00156 Phosphoribosyl transferase domain AMJ96_PB00429 PF04055 Radical SAM superfamily AMJ96_PB00429 PF06463 Molybdenum Cofactor Synthesis C AMJ96_PB00433 PF14572 Phosphoribosyl synthetase-associated domain AMJ96_PB00433 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMJ96_PB00434 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00434 PF00107 Zinc-binding dehydrogenase AMJ96_PB00437 PF13614 AAA domain AMJ96_PB00438 PF07506 RepB plasmid partitioning protein AMJ96_PB00438 PF02195 ParB-like nuclease domain AMJ96_PB00440 PF11800 Replication protein C C-terminal region AMJ96_PB00440 PF03428 Replication protein C N-terminal domain AMJ96_PC00001 PF11972 HTH DNA binding domain AMJ96_PC00001 PF07756 Protein of unknown function (DUF1612) AMJ96_PC00002 PF01027 Inhibitor of apoptosis-promoting Bax1 AMJ96_PC00004 PF04542 Sigma-70 region 2 AMJ96_PC00004 PF08281 Sigma-70, region 4 AMJ96_PC00006 PF00376 MerR family regulatory protein AMJ96_PC00006 PF09278 MerR, DNA binding AMJ96_PC00007 PF04945 YHS domain AMJ96_PC00008 PF00128 Alpha amylase, catalytic domain AMJ96_PC00010 PF00912 Transglycosylase AMJ96_PC00010 PF00905 Penicillin binding protein transpeptidase domain AMJ96_PC00010 PF06832 Penicillin-Binding Protein C-terminus Family AMJ96_PC00011 PF07703 Alpha-2-macroglobulin bait region domain AMJ96_PC00011 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMJ96_PC00011 PF00207 Alpha-2-macroglobulin family AMJ96_PC00011 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMJ96_PC00011 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMJ96_PC00011 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMJ96_PC00011 PF17962 Bacterial macroglobulin domain 6 AMJ96_PC00011 PF01835 MG2 domain AMJ96_PC00012 PF01625 Peptide methionine sulfoxide reductase AMJ96_PC00013 PF03734 L,D-transpeptidase catalytic domain AMJ96_PC00016 PF07690 Major Facilitator Superfamily AMJ96_PC00017 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00018 PF00106 short chain dehydrogenase AMJ96_PC00019 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00022 PF00664 ABC transporter transmembrane region AMJ96_PC00022 PF00005 ABC transporter AMJ96_PC00023 PF00664 ABC transporter transmembrane region AMJ96_PC00023 PF00005 ABC transporter AMJ96_PC00024 PF03358 NADPH-dependent FMN reductase AMJ96_PC00024 PF01566 Natural resistance-associated macrophage protein AMJ96_PC00026 PF13426 PAS domain AMJ96_PC00026 PF00072 Response regulator receiver domain AMJ96_PC00026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00028 PF02104 SURF1 family AMJ96_PC00029 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMJ96_PC00030 PF00510 Cytochrome c oxidase subunit III AMJ96_PC00031 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PC00032 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_PC00032 PF06481 COX Aromatic Rich Motif AMJ96_PC00033 PF00083 Sugar (and other) transporter AMJ96_PC00035 PF13302 Acetyltransferase (GNAT) domain AMJ96_PC00035 PF00027 Cyclic nucleotide-binding domain AMJ96_PC00036 PF00664 ABC transporter transmembrane region AMJ96_PC00036 PF00005 ABC transporter AMJ96_PC00038 PF00534 Glycosyl transferases group 1 AMJ96_PC00038 PF13439 Glycosyltransferase Family 4 AMJ96_PC00040 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00040 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PC00041 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00042 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00043 PF00005 ABC transporter AMJ96_PC00043 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJ96_PC00045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJ96_PC00045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJ96_PC00049 PF02082 Transcriptional regulator AMJ96_PC00050 PF14759 Reductase C-terminal AMJ96_PC00050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00055 PF17863 AAA lid domain AMJ96_PC00055 PF07726 ATPase family associated with various cellular activities (AAA) AMJ96_PC00060 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00063 PF00561 alpha/beta hydrolase fold AMJ96_PC00065 PF12706 Beta-lactamase superfamily domain AMJ96_PC00066 PF10397 Adenylosuccinate lyase C-terminus AMJ96_PC00066 PF00206 Lyase AMJ96_PC00067 PF00775 Dioxygenase AMJ96_PC00068 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMJ96_PC00068 PF00775 Dioxygenase AMJ96_PC00069 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PC00070 PF12146 Serine aminopeptidase, S33 AMJ96_PC00071 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00071 PF03466 LysR substrate binding domain AMJ96_PC00072 PF09722 Protein of unknown function (DUF2384) AMJ96_PC00076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00076 PF03466 LysR substrate binding domain AMJ96_PC00077 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJ96_PC00079 PF00107 Zinc-binding dehydrogenase AMJ96_PC00079 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PC00081 PF01556 DnaJ C terminal domain AMJ96_PC00081 PF00684 DnaJ central domain AMJ96_PC00081 PF00226 DnaJ domain AMJ96_PC00082 PF05962 HutD AMJ96_PC00083 PF17392 Urocanase C-terminal domain AMJ96_PC00083 PF01175 Urocanase Rossmann-like domain AMJ96_PC00083 PF17391 Urocanase N-terminal domain AMJ96_PC00086 PF00221 Aromatic amino acid lyase AMJ96_PC00087 PF01979 Amidohydrolase family AMJ96_PC00088 PF01979 Amidohydrolase family AMJ96_PC00089 PF07702 UTRA domain AMJ96_PC00089 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00090 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00090 PF07702 UTRA domain AMJ96_PC00091 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PC00092 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00093 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00094 PF00005 ABC transporter AMJ96_PC00095 PF00221 Aromatic amino acid lyase AMJ96_PC00097 PF01569 PAP2 superfamily AMJ96_PC00098 PF01266 FAD dependent oxidoreductase AMJ96_PC00098 PF16350 FAD dependent oxidoreductase central domain AMJ96_PC00098 PF01571 Aminomethyltransferase folate-binding domain AMJ96_PC00098 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_PC00104 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMJ96_PC00104 PF02056 Family 4 glycosyl hydrolase AMJ96_PC00105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00106 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00107 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00107 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PC00108 PF00005 ABC transporter AMJ96_PC00108 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00109 PF02056 Family 4 glycosyl hydrolase AMJ96_PC00109 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMJ96_PC00110 PF16864 Dimerisation domain AMJ96_PC00110 PF00891 O-methyltransferase domain AMJ96_PC00111 PF03737 Aldolase/RraA AMJ96_PC00112 PF13378 Enolase C-terminal domain-like AMJ96_PC00112 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00113 PF00005 ABC transporter AMJ96_PC00113 PF03459 TOBE domain AMJ96_PC00113 PF17912 MalK OB fold domain AMJ96_PC00114 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00115 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00116 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00117 PF07729 FCD domain AMJ96_PC00117 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00118 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00118 PF13378 Enolase C-terminal domain-like AMJ96_PC00119 PF13378 Enolase C-terminal domain-like AMJ96_PC00119 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00120 PF13378 Enolase C-terminal domain-like AMJ96_PC00122 PF11818 C-terminal domain of tail specific protease (DUF3340) AMJ96_PC00122 PF00595 PDZ domain AMJ96_PC00122 PF17804 Tail specific protease N-terminal domain AMJ96_PC00122 PF03572 Peptidase family S41 AMJ96_PC00123 PF01850 PIN domain AMJ96_PC00124 PF09957 Bacterial antitoxin of type II TA system, VapB AMJ96_PC00126 PF03466 LysR substrate binding domain AMJ96_PC00126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00128 PF01380 SIS domain AMJ96_PC00128 PF01418 Helix-turn-helix domain, rpiR family AMJ96_PC00129 PF01177 Asp/Glu/Hydantoin racemase AMJ96_PC00131 PF08402 TOBE domain AMJ96_PC00131 PF00005 ABC transporter AMJ96_PC00132 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00133 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00135 PF00557 Metallopeptidase family M24 AMJ96_PC00141 PF01389 OmpA-like transmembrane domain AMJ96_PC00141 PF00691 OmpA family AMJ96_PC00143 PF00089 Trypsin AMJ96_PC00148 PF03466 LysR substrate binding domain AMJ96_PC00148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00149 PF00561 alpha/beta hydrolase fold AMJ96_PC00152 PF01022 Bacterial regulatory protein, arsR family AMJ96_PC00161 PF03466 LysR substrate binding domain AMJ96_PC00161 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00164 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00169 PF00437 Type II/IV secretion system protein AMJ96_PC00177 PF00437 Type II/IV secretion system protein AMJ96_PC00182 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMJ96_PC00183 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00183 PF13191 AAA ATPase domain AMJ96_PC00184 PF00501 AMP-binding enzyme AMJ96_PC00184 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PC00186 PF01022 Bacterial regulatory protein, arsR family AMJ96_PC00187 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00188 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00189 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00190 PF00296 Luciferase-like monooxygenase AMJ96_PC00191 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00191 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00192 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00192 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PC00192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00193 PF00296 Luciferase-like monooxygenase AMJ96_PC00194 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00197 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00197 PF00005 ABC transporter AMJ96_PC00198 PF00005 ABC transporter AMJ96_PC00198 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00199 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00202 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMJ96_PC00204 PF01757 Acyltransferase family AMJ96_PC00208 PF09339 IclR helix-turn-helix domain AMJ96_PC00208 PF01614 Bacterial transcriptional regulator AMJ96_PC00209 PF01144 Coenzyme A transferase AMJ96_PC00210 PF01144 Coenzyme A transferase AMJ96_PC00211 PF00108 Thiolase, N-terminal domain AMJ96_PC00211 PF02803 Thiolase, C-terminal domain AMJ96_PC00213 PF07690 Major Facilitator Superfamily AMJ96_PC00215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_PC00215 PF00128 Alpha amylase, catalytic domain AMJ96_PC00220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00220 PF00072 Response regulator receiver domain AMJ96_PC00220 PF13426 PAS domain AMJ96_PC00222 PF01925 Sulfite exporter TauE/SafE AMJ96_PC00223 PF04273 Putative phosphatase (DUF442) AMJ96_PC00223 PF00753 Metallo-beta-lactamase superfamily AMJ96_PC00225 PF01037 Lrp/AsnC ligand binding domain AMJ96_PC00228 PF03466 LysR substrate binding domain AMJ96_PC00228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00229 PF13454 FAD-NAD(P)-binding AMJ96_PC00230 PF00005 ABC transporter AMJ96_PC00231 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PC00232 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00233 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00237 PF03167 Uracil DNA glycosylase superfamily AMJ96_PC00238 PF13396 Phospholipase_D-nuclease N-terminal AMJ96_PC00238 PF13091 PLD-like domain AMJ96_PC00253 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00253 PF07729 FCD domain AMJ96_PC00254 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PC00256 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00257 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00258 PF00005 ABC transporter AMJ96_PC00258 PF17912 MalK OB fold domain AMJ96_PC00259 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_PC00260 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_PC00261 PF01068 ATP dependent DNA ligase domain AMJ96_PC00261 PF04679 ATP dependent DNA ligase C terminal region AMJ96_PC00261 PF13298 DNA polymerase Ligase (LigD) AMJ96_PC00262 PF13298 DNA polymerase Ligase (LigD) AMJ96_PC00262 PF01068 ATP dependent DNA ligase domain AMJ96_PC00262 PF04679 ATP dependent DNA ligase C terminal region AMJ96_PC00263 PF06441 Epoxide hydrolase N terminus AMJ96_PC00264 PF01546 Peptidase family M20/M25/M40 AMJ96_PC00264 PF07687 Peptidase dimerisation domain AMJ96_PC00266 PF00005 ABC transporter AMJ96_PC00266 PF12857 TOBE-like domain AMJ96_PC00267 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00270 PF02530 Porin subfamily AMJ96_PC00271 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_PC00272 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PC00272 PF00072 Response regulator receiver domain AMJ96_PC00273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00273 PF13492 GAF domain AMJ96_PC00273 PF13493 Domain of unknown function (DUF4118) AMJ96_PC00273 PF02702 Osmosensitive K+ channel His kinase sensor domain AMJ96_PC00273 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PC00274 PF02669 K+-transporting ATPase, c chain AMJ96_PC00276 PF03814 Potassium-transporting ATPase A subunit AMJ96_PC00278 PF04234 CopC domain AMJ96_PC00279 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PC00279 PF00107 Zinc-binding dehydrogenase AMJ96_PC00281 PF00403 Heavy-metal-associated domain AMJ96_PC00281 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00281 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_PC00283 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00283 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PC00283 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00288 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_PC00288 PF00005 ABC transporter AMJ96_PC00289 PF00005 ABC transporter AMJ96_PC00290 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PC00292 PF00732 GMC oxidoreductase AMJ96_PC00292 PF05199 GMC oxidoreductase AMJ96_PC00293 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PC00293 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PC00294 PF00005 ABC transporter AMJ96_PC00297 PF05336 L-rhamnose mutarotase AMJ96_PC00298 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PC00299 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PC00300 PF00005 ABC transporter AMJ96_PC00301 PF13407 Periplasmic binding protein domain AMJ96_PC00302 PF08220 DeoR-like helix-turn-helix domain AMJ96_PC00302 PF00455 DeoR C terminal sensor domain AMJ96_PC00303 PF00596 Class II Aldolase and Adducin N-terminal domain AMJ96_PC00304 PF01261 Xylose isomerase-like TIM barrel AMJ96_PC00306 PF04542 Sigma-70 region 2 AMJ96_PC00306 PF12680 SnoaL-like domain AMJ96_PC00306 PF08281 Sigma-70, region 4 AMJ96_PC00307 PF01979 Amidohydrolase family AMJ96_PC00311 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PC00313 PF01968 Hydantoinase/oxoprolinase AMJ96_PC00313 PF05378 Hydantoinase/oxoprolinase N-terminal region AMJ96_PC00316 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00321 PF00263 Bacterial type II and III secretion system protein AMJ96_PC00321 PF13629 Pilus formation protein N terminal region AMJ96_PC00321 PF04972 BON domain AMJ96_PC00328 PF00437 Type II/IV secretion system protein AMJ96_PC00337 PF01425 Amidase AMJ96_PC00339 PF00884 Sulfatase AMJ96_PC00339 PF12411 Choline sulfatase enzyme C terminal AMJ96_PC00340 PF03466 LysR substrate binding domain AMJ96_PC00340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00342 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_PC00344 PF00005 ABC transporter AMJ96_PC00344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00345 PF00005 ABC transporter AMJ96_PC00346 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00347 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00349 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PC00351 PF08543 Phosphomethylpyrimidine kinase AMJ96_PC00352 PF02581 Thiamine monophosphate synthase AMJ96_PC00353 PF02110 Hydroxyethylthiazole kinase family AMJ96_PC00355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00356 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00357 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00357 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PC00359 PF03841 L-seryl-tRNA selenium transferase AMJ96_PC00360 PF00005 ABC transporter AMJ96_PC00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00361 PF07883 Cupin domain AMJ96_PC00361 PF05899 Protein of unknown function (DUF861) AMJ96_PC00363 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00363 PF07729 FCD domain AMJ96_PC00364 PF00106 short chain dehydrogenase AMJ96_PC00366 PF00324 Amino acid permease AMJ96_PC00368 PF00206 Lyase AMJ96_PC00368 PF10415 Fumarase C C-terminus AMJ96_PC00369 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMJ96_PC00371 PF00251 Glycosyl hydrolases family 32 N-terminal domain AMJ96_PC00371 PF08244 Glycosyl hydrolases family 32 C terminal AMJ96_PC00372 PF18835 Beta helix repeat of Inulin fructotransferase AMJ96_PC00372 PF05048 Periplasmic copper-binding protein (NosD) AMJ96_PC00373 PF00005 ABC transporter AMJ96_PC00373 PF17912 MalK OB fold domain AMJ96_PC00374 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00375 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00376 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00377 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00381 PF03552 Cellulose synthase AMJ96_PC00381 PF07238 PilZ domain AMJ96_PC00381 PF00535 Glycosyl transferase family 2 AMJ96_PC00385 PF01738 Dienelactone hydrolase family AMJ96_PC00386 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PC00386 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PC00387 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00388 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00389 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00390 PF00005 ABC transporter AMJ96_PC00390 PF17912 MalK OB fold domain AMJ96_PC00395 PF14031 Putative serine dehydratase domain AMJ96_PC00395 PF01168 Alanine racemase, N-terminal domain AMJ96_PC00396 PF07364 Metallopeptidase family M81 AMJ96_PC00396 PF07171 MlrC C-terminus AMJ96_PC00398 PF01042 Endoribonuclease L-PSP AMJ96_PC00399 PF02685 Glucokinase AMJ96_PC00399 PF01380 SIS domain AMJ96_PC00399 PF01418 Helix-turn-helix domain, rpiR family AMJ96_PC00402 PF00480 ROK family AMJ96_PC00405 PF12833 Helix-turn-helix domain AMJ96_PC00405 PF10114 Sensory domain found in PocR AMJ96_PC00406 PF02838 Glycosyl hydrolase family 20, domain 2 AMJ96_PC00406 PF00728 Glycosyl hydrolase family 20, catalytic domain AMJ96_PC00407 PF00700 Bacterial flagellin C-terminal helical region AMJ96_PC00407 PF00669 Bacterial flagellin N-terminal helical region AMJ96_PC00408 PF07690 Major Facilitator Superfamily AMJ96_PC00411 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMJ96_PC00413 PF07729 FCD domain AMJ96_PC00413 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00415 PF04962 KduI/IolB family AMJ96_PC00419 PF01593 Flavin containing amine oxidoreductase AMJ96_PC00420 PF00248 Aldo/keto reductase family AMJ96_PC00421 PF03776 Septum formation topological specificity factor MinE AMJ96_PC00422 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_PC00423 PF03775 Septum formation inhibitor MinC, C-terminal domain AMJ96_PC00424 PF00551 Formyl transferase AMJ96_PC00425 PF00120 Glutamine synthetase, catalytic domain AMJ96_PC00426 PF01645 Conserved region in glutamate synthase AMJ96_PC00427 PF01493 GXGXG motif AMJ96_PC00430 PF12833 Helix-turn-helix domain AMJ96_PC00430 PF01965 DJ-1/PfpI family AMJ96_PC00431 PF01266 FAD dependent oxidoreductase AMJ96_PC00432 PF04267 Sarcosine oxidase, delta subunit family AMJ96_PC00433 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00433 PF01571 Aminomethyltransferase folate-binding domain AMJ96_PC00433 PF17806 Sarcosine oxidase A3 domain AMJ96_PC00433 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_PC00435 PF01209 ubiE/COQ5 methyltransferase family AMJ96_PC00436 PF16859 Tetracyclin repressor-like, C-terminal domain AMJ96_PC00436 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00437 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00438 PF13378 Enolase C-terminal domain-like AMJ96_PC00438 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00442 PF01381 Helix-turn-helix AMJ96_PC00445 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMJ96_PC00448 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMJ96_PC00448 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMJ96_PC00449 PF00890 FAD binding domain AMJ96_PC00449 PF02910 Fumarate reductase flavoprotein C-term AMJ96_PC00450 PF02445 Quinolinate synthetase A protein AMJ96_PC00452 PF02548 Ketopantoate hydroxymethyltransferase AMJ96_PC00453 PF14759 Reductase C-terminal AMJ96_PC00453 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00454 PF00355 Rieske [2Fe-2S] domain AMJ96_PC00456 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00458 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00459 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00460 PF02571 Precorrin-6x reductase CbiJ/CobK AMJ96_PC00461 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00462 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00463 PF02570 Precorrin-8X methylmutase AMJ96_PC00464 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJ96_PC00465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00466 PF13614 AAA domain AMJ96_PC00467 PF02195 ParB-like nuclease domain AMJ96_PC00467 PF07506 RepB plasmid partitioning protein AMJ96_PC00469 PF03428 Replication protein C N-terminal domain AMJ96_PC00469 PF11800 Replication protein C C-terminal region AMJ96_PD00002 PF02569 Pantoate-beta-alanine ligase AMJ96_PD00003 PF02548 Ketopantoate hydroxymethyltransferase AMJ96_PD00004 PF03466 LysR substrate binding domain AMJ96_PD00004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00005 PF00141 Peroxidase AMJ96_PD00007 PF00106 short chain dehydrogenase AMJ96_PD00008 PF01850 PIN domain AMJ96_PD00009 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMJ96_PD00011 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMJ96_PD00011 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_PD00013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00013 PF03466 LysR substrate binding domain AMJ96_PD00014 PF08659 KR domain AMJ96_PD00014 PF14765 Polyketide synthase dehydratase AMJ96_PD00014 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_PD00014 PF00550 Phosphopantetheine attachment site AMJ96_PD00014 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00014 PF00698 Acyl transferase domain AMJ96_PD00014 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_PD00014 PF16197 Ketoacyl-synthetase C-terminal extension AMJ96_PD00014 PF00107 Zinc-binding dehydrogenase AMJ96_PD00016 PF00501 AMP-binding enzyme AMJ96_PD00016 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PD00017 PF00108 Thiolase, N-terminal domain AMJ96_PD00017 PF02803 Thiolase, C-terminal domain AMJ96_PD00018 PF03466 LysR substrate binding domain AMJ96_PD00018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00022 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PD00033 PF02734 DAK2 domain AMJ96_PD00034 PF02733 Dak1 domain AMJ96_PD00036 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00036 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00037 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00038 PF00005 ABC transporter AMJ96_PD00040 PF13407 Periplasmic binding protein domain AMJ96_PD00041 PF10727 Rossmann-like domain AMJ96_PD00041 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term AMJ96_PD00042 PF02502 Ribose/Galactose Isomerase AMJ96_PD00043 PF00121 Triosephosphate isomerase AMJ96_PD00044 PF17042 Nucleotide-binding C-terminal domain AMJ96_PD00044 PF07005 Sugar-binding N-terminal domain AMJ96_PD00045 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AMJ96_PD00045 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AMJ96_PD00046 PF07729 FCD domain AMJ96_PD00046 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00049 PF00005 ABC transporter AMJ96_PD00049 PF00664 ABC transporter transmembrane region AMJ96_PD00050 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00051 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00052 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00053 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00055 PF05974 Domain of unknown function (DUF892) AMJ96_PD00056 PF08281 Sigma-70, region 4 AMJ96_PD00056 PF04542 Sigma-70 region 2 AMJ96_PD00061 PF04542 Sigma-70 region 2 AMJ96_PD00061 PF04545 Sigma-70, region 4 AMJ96_PD00070 PF13426 PAS domain AMJ96_PD00070 PF08447 PAS fold AMJ96_PD00070 PF07536 HWE histidine kinase AMJ96_PD00072 PF07729 FCD domain AMJ96_PD00072 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00073 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_PD00075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJ96_PD00076 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00076 PF00107 Zinc-binding dehydrogenase AMJ96_PD00082 PF00561 alpha/beta hydrolase fold AMJ96_PD00083 PF04752 ChaC-like protein AMJ96_PD00084 PF03466 LysR substrate binding domain AMJ96_PD00084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00085 PF01593 Flavin containing amine oxidoreductase AMJ96_PD00087 PF00360 Phytochrome region AMJ96_PD00087 PF01590 GAF domain AMJ96_PD00087 PF00563 EAL domain AMJ96_PD00087 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PD00088 PF13426 PAS domain AMJ96_PD00088 PF07536 HWE histidine kinase AMJ96_PD00088 PF13581 Histidine kinase-like ATPase domain AMJ96_PD00089 PF00072 Response regulator receiver domain AMJ96_PD00089 PF13426 PAS domain AMJ96_PD00089 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00096 PF00999 Sodium/hydrogen exchanger family AMJ96_PD00097 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_PD00097 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00098 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00100 PF17912 MalK OB fold domain AMJ96_PD00100 PF00005 ABC transporter AMJ96_PD00100 PF03459 TOBE domain AMJ96_PD00102 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00103 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00104 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00107 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00108 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00109 PF00294 pfkB family carbohydrate kinase AMJ96_PD00110 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMJ96_PD00113 PF00665 Integrase core domain AMJ96_PD00113 PF13936 Helix-turn-helix domain AMJ96_PD00115 PF02371 Transposase IS116/IS110/IS902 family AMJ96_PD00115 PF01548 Transposase AMJ96_PD00116 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AMJ96_PD00117 PF03428 Replication protein C N-terminal domain AMJ96_PD00117 PF11800 Replication protein C C-terminal region AMJ96_PD00118 PF02397 Bacterial sugar transferase AMJ96_PD00119 PF02719 Polysaccharide biosynthesis protein AMJ96_PD00123 PF07729 FCD domain AMJ96_PD00123 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00124 PF03786 D-mannonate dehydratase (UxuA) AMJ96_PD00127 PF00005 ABC transporter AMJ96_PD00127 PF12848 ABC transporter AMJ96_PD00132 PF03466 LysR substrate binding domain AMJ96_PD00132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00134 PF00455 DeoR C terminal sensor domain AMJ96_PD00134 PF08220 DeoR-like helix-turn-helix domain AMJ96_PD00135 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMJ96_PD00135 PF01266 FAD dependent oxidoreductase AMJ96_PD00137 PF17912 MalK OB fold domain AMJ96_PD00137 PF00005 ABC transporter AMJ96_PD00138 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00139 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00142 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_PD00142 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_PD00143 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_PD00143 PF01411 tRNA synthetases class II (A) AMJ96_PD00144 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMJ96_PD00145 PF00465 Iron-containing alcohol dehydrogenase AMJ96_PD00147 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00148 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00149 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00150 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PD00150 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00151 PF00005 ABC transporter AMJ96_PD00152 PF00005 ABC transporter AMJ96_PD00152 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00155 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00159 PF13520 Amino acid permease AMJ96_PD00162 PF00106 short chain dehydrogenase AMJ96_PD00163 PF00107 Zinc-binding dehydrogenase AMJ96_PD00163 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00163 PF13823 Alcohol dehydrogenase GroES-associated AMJ96_PD00170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00171 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00171 PF00107 Zinc-binding dehydrogenase AMJ96_PD00172 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00173 PF16363 GDP-mannose 4,6 dehydratase AMJ96_PD00178 PF16363 GDP-mannose 4,6 dehydratase AMJ96_PD00180 PF00034 Cytochrome c AMJ96_PD00183 PF01339 CheB methylesterase AMJ96_PD00183 PF00072 Response regulator receiver domain AMJ96_PD00184 PF01339 CheB methylesterase AMJ96_PD00184 PF03705 CheR methyltransferase, all-alpha domain AMJ96_PD00184 PF08448 PAS fold AMJ96_PD00184 PF01739 CheR methyltransferase, SAM binding domain AMJ96_PD00189 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PD00190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_PD00190 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMJ96_PD00192 PF00384 Molybdopterin oxidoreductase AMJ96_PD00195 PF01565 FAD binding domain AMJ96_PD00195 PF02913 FAD linked oxidases, C-terminal domain AMJ96_PD00195 PF13183 4Fe-4S dicluster domain AMJ96_PD00196 PF02581 Thiamine monophosphate synthase AMJ96_PD00197 PF05690 Thiazole biosynthesis protein ThiG AMJ96_PD00199 PF01266 FAD dependent oxidoreductase AMJ96_PD00200 PF13667 ThiC-associated domain AMJ96_PD00200 PF01964 Radical SAM ThiC family AMJ96_PD00203 PF00149 Calcineurin-like phosphoesterase AMJ96_PD00204 PF13514 AAA domain AMJ96_PD00208 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_PD00209 PF09370 Phosphoenolpyruvate hydrolase-like AMJ96_PD00215 PF00501 AMP-binding enzyme AMJ96_PD00215 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PD00215 PF01553 Acyltransferase AMJ96_PD00217 PF07969 Amidohydrolase family AMJ96_PD00218 PF13649 Methyltransferase domain AMJ96_PD00219 PF01625 Peptide methionine sulfoxide reductase AMJ96_PD00221 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00222 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00223 PF00005 ABC transporter AMJ96_PD00223 PF08402 TOBE domain AMJ96_PD00224 PF00459 Inositol monophosphatase family AMJ96_PD00225 PF03459 TOBE domain AMJ96_PD00225 PF17912 MalK OB fold domain AMJ96_PD00225 PF00005 ABC transporter AMJ96_PD00227 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00231 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00233 PF00459 Inositol monophosphatase family AMJ96_PD00234 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00235 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_PD00236 PF03459 TOBE domain AMJ96_PD00236 PF00005 ABC transporter AMJ96_PD00236 PF17912 MalK OB fold domain AMJ96_PD00237 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00240 PF04073 Aminoacyl-tRNA editing domain AMJ96_PD00242 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_PD00242 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00243 PF04955 HupE / UreJ protein AMJ96_PD00245 PF00664 ABC transporter transmembrane region AMJ96_PD00245 PF00005 ABC transporter AMJ96_PD00246 PF00664 ABC transporter transmembrane region AMJ96_PD00246 PF00005 ABC transporter AMJ96_PD00247 PF01654 Cytochrome bd terminal oxidase subunit I AMJ96_PD00248 PF02322 Cytochrome bd terminal oxidase subunit II AMJ96_PD00249 PF08173 Membrane bound YbgT-like protein AMJ96_PD00250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00251 PF17912 MalK OB fold domain AMJ96_PD00251 PF00005 ABC transporter AMJ96_PD00252 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00253 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00254 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00256 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_PD00258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00259 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00259 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00262 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00263 PF00005 ABC transporter AMJ96_PD00263 PF09383 NIL domain AMJ96_PD00264 PF03180 NLPA lipoprotein AMJ96_PD00265 PF07690 Major Facilitator Superfamily AMJ96_PD00266 PF01381 Helix-turn-helix AMJ96_PD00267 PF00005 ABC transporter AMJ96_PD00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00269 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00270 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00271 PF07729 FCD domain AMJ96_PD00271 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00272 PF00005 ABC transporter AMJ96_PD00273 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00274 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00276 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00277 PF00672 HAMP domain AMJ96_PD00277 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00278 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMJ96_PD00279 PF00557 Metallopeptidase family M24 AMJ96_PD00279 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_PD00280 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_PD00281 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_PD00282 PF17645 Arylmalonate decarboxylase AMJ96_PD00283 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00284 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00286 PF00005 ABC transporter AMJ96_PD00287 PF00155 Aminotransferase class I and II AMJ96_PD00287 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00288 PF01037 Lrp/AsnC ligand binding domain AMJ96_PD00289 PF00171 Aldehyde dehydrogenase family AMJ96_PD00290 PF00202 Aminotransferase class-III AMJ96_PD00291 PF00107 Zinc-binding dehydrogenase AMJ96_PD00291 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00293 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00295 PF00005 ABC transporter AMJ96_PD00295 PF03459 TOBE domain AMJ96_PD00295 PF17912 MalK OB fold domain AMJ96_PD00296 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00297 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00298 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00299 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00300 PF03428 Replication protein C N-terminal domain AMJ96_PD00300 PF11800 Replication protein C C-terminal region AMJ96_PD00301 PF07506 RepB plasmid partitioning protein AMJ96_PD00301 PF02195 ParB-like nuclease domain AMJ96_PD00302 PF13614 AAA domain AMJ96_PD00304 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00305 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00306 PF00005 ABC transporter AMJ96_PD00307 PF13407 Periplasmic binding protein domain AMJ96_PD00308 PF02567 Phenazine biosynthesis-like protein AMJ96_PD00309 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00310 PF00005 ABC transporter AMJ96_PD00312 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00314 PF13426 PAS domain AMJ96_PD00314 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00314 PF00989 PAS fold AMJ96_PD00314 PF08447 PAS fold AMJ96_PD00314 PF13493 Domain of unknown function (DUF4118) AMJ96_PD00315 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00315 PF00072 Response regulator receiver domain AMJ96_PD00316 PF00072 Response regulator receiver domain AMJ96_PD00316 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00317 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00317 PF00072 Response regulator receiver domain AMJ96_PD00318 PF01022 Bacterial regulatory protein, arsR family AMJ96_PD00319 PF00881 Nitroreductase family AMJ96_PD00320 PF03358 NADPH-dependent FMN reductase AMJ96_PD00321 PF13378 Enolase C-terminal domain-like AMJ96_PD00321 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00322 PF13378 Enolase C-terminal domain-like AMJ96_PD00322 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00323 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00323 PF00005 ABC transporter AMJ96_PD00324 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00324 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PD00325 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00326 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00327 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00327 PF07729 FCD domain AMJ96_PD00328 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00329 PF08450 SMP-30/Gluconolactonase/LRE-like region AMJ96_PD00330 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00331 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00332 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00334 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00334 PF00005 ABC transporter AMJ96_PD00335 PF00005 ABC transporter AMJ96_PD00335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00337 PF00892 EamA-like transporter family AMJ96_PD00340 PF03706 Lysylphosphatidylglycerol synthase TM region AMJ96_PD00345 PF01266 FAD dependent oxidoreductase AMJ96_PD00346 PF00005 ABC transporter AMJ96_PD00347 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00348 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00360 PF02446 4-alpha-glucanotransferase AMJ96_PD00361 PF00128 Alpha amylase, catalytic domain AMJ96_PD00361 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_PD00361 PF11941 Domain of unknown function (DUF3459) AMJ96_PD00362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00362 PF00072 Response regulator receiver domain AMJ96_PD00362 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00362 PF13188 PAS domain AMJ96_PD00362 PF08448 PAS fold AMJ96_PD00363 PF00072 Response regulator receiver domain AMJ96_PD00363 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00363 PF00672 HAMP domain AMJ96_PD00363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00363 PF01627 Hpt domain AMJ96_PD00363 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMJ96_PD00367 PF01032 FecCD transport family AMJ96_PD00368 PF00005 ABC transporter AMJ96_PD00369 PF01037 Lrp/AsnC ligand binding domain AMJ96_PD00370 PF00155 Aminotransferase class I and II AMJ96_PD00371 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00371 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00371 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00372 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_PD00372 PF02806 Alpha amylase, C-terminal all-beta domain AMJ96_PD00372 PF00128 Alpha amylase, catalytic domain AMJ96_PD00373 PF16657 Maltogenic Amylase, C-terminal domain AMJ96_PD00373 PF00128 Alpha amylase, catalytic domain AMJ96_PD00374 PF00128 Alpha amylase, catalytic domain AMJ96_PD00374 PF11896 Domain of unknown function (DUF3416) AMJ96_PD00376 PF00753 Metallo-beta-lactamase superfamily AMJ96_PD00378 PF01544 CorA-like Mg2+ transporter protein AMJ96_PD00379 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMJ96_PD00381 PF00873 AcrB/AcrD/AcrF family AMJ96_PD00382 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJ96_PD00383 PF13533 Biotin-lipoyl like AMJ96_PD00385 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00388 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00389 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00390 PF08402 TOBE domain AMJ96_PD00390 PF00005 ABC transporter AMJ96_PD00392 PF07470 Glycosyl Hydrolase Family 88 AMJ96_PD00397 PF13407 Periplasmic binding protein domain AMJ96_PD00398 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00399 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00400 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00402 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00405 PF07729 FCD domain AMJ96_PD00405 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00407 PF00005 ABC transporter AMJ96_PD00408 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00409 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00410 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00410 PF00072 Response regulator receiver domain AMJ96_PD00412 PF12833 Helix-turn-helix domain AMJ96_PD00412 PF01965 DJ-1/PfpI family AMJ96_PD00416 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00417 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00418 PF07470 Glycosyl Hydrolase Family 88 AMJ96_PD00419 PF03459 TOBE domain AMJ96_PD00419 PF17912 MalK OB fold domain AMJ96_PD00419 PF00005 ABC transporter AMJ96_PD00421 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00426 PF16736 Single Cache-like AMJ96_PD00426 PF00989 PAS fold AMJ96_PD00426 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00432 PF00166 Chaperonin 10 Kd subunit AMJ96_PD00433 PF00118 TCP-1/cpn60 chaperonin family AMJ96_PD00436 PF03466 LysR substrate binding domain AMJ96_PD00436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00440 PF01546 Peptidase family M20/M25/M40 AMJ96_PD00440 PF07687 Peptidase dimerisation domain AMJ96_PD00441 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00443 PF00171 Aldehyde dehydrogenase family AMJ96_PD00444 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_PD00445 PF00171 Aldehyde dehydrogenase family AMJ96_PD00446 PF01266 FAD dependent oxidoreductase AMJ96_PD00448 PF00596 Class II Aldolase and Adducin N-terminal domain AMJ96_PD00449 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_PD00449 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PD00451 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00452 PF17042 Nucleotide-binding C-terminal domain AMJ96_PD00452 PF07005 Sugar-binding N-terminal domain AMJ96_PD00454 PF00202 Aminotransferase class-III AMJ96_PD00456 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00457 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00458 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PD00458 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00459 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00459 PF00005 ABC transporter AMJ96_PD00461 PF01266 FAD dependent oxidoreductase AMJ96_PD00462 PF01266 FAD dependent oxidoreductase AMJ96_PD00464 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PD00464 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_PD00465 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_PD00466 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_PD00466 PF13291 ACT domain AMJ96_PD00467 PF00171 Aldehyde dehydrogenase family AMJ96_PD00470 PF01037 Lrp/AsnC ligand binding domain AMJ96_PD00471 PF01266 FAD dependent oxidoreductase AMJ96_PD00472 PF00672 HAMP domain AMJ96_PD00472 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00473 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMJ96_PD00473 PF00171 Aldehyde dehydrogenase family AMJ96_PD00473 PF01619 Proline dehydrogenase AMJ96_PD00473 PF14850 DNA-binding domain of Proline dehydrogenase AMJ96_PD00475 PF01037 Lrp/AsnC ligand binding domain AMJ96_PD00477 PF12833 Helix-turn-helix domain AMJ96_PD00477 PF02311 AraC-like ligand binding domain AMJ96_PD00480 PF00171 Aldehyde dehydrogenase family AMJ96_PD00481 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00482 PF07729 FCD domain AMJ96_PD00482 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00484 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PD00485 PF00756 Putative esterase AMJ96_PD00486 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00486 PF00107 Zinc-binding dehydrogenase AMJ96_PD00488 PF01012 Electron transfer flavoprotein domain AMJ96_PD00488 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_PD00489 PF01012 Electron transfer flavoprotein domain AMJ96_PD00491 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJ96_PD00493 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_PD00493 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJ96_PD00495 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00496 PF00005 ABC transporter AMJ96_PD00496 PF00571 CBS domain AMJ96_PD00498 PF12833 Helix-turn-helix domain AMJ96_PD00500 PF00384 Molybdopterin oxidoreductase AMJ96_PD00501 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PD00501 PF01590 GAF domain AMJ96_PD00501 PF00563 EAL domain AMJ96_PD00501 PF00360 Phytochrome region AMJ96_PD00502 PF00248 Aldo/keto reductase family AMJ96_PD00503 PF04343 Protein of unknown function, DUF488 AMJ96_PD00514 PF02615 Malate/L-lactate dehydrogenase AMJ96_PD00516 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJ96_PD00516 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_PD00519 PF00202 Aminotransferase class-III AMJ96_PD00520 PF14525 AraC-binding-like domain AMJ96_PD00520 PF12833 Helix-turn-helix domain AMJ96_PD00521 PF01266 FAD dependent oxidoreductase AMJ96_PD00522 PF01168 Alanine racemase, N-terminal domain AMJ96_PD00522 PF00842 Alanine racemase, C-terminal domain AMJ96_PD00523 PF01037 Lrp/AsnC ligand binding domain AMJ96_PD00524 PF03472 Autoinducer binding domain AMJ96_PD00524 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00525 PF00765 Autoinducer synthase AMJ96_PD00528 PF00732 GMC oxidoreductase AMJ96_PD00528 PF05199 GMC oxidoreductase AMJ96_PD00531 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00534 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00534 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00534 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00535 PF00563 EAL domain AMJ96_PD00535 PF00990 Diguanylate cyclase, GGDEF domain AMJ96_PD00535 PF03707 Bacterial signalling protein N terminal repeat AMJ96_PD00535 PF13188 PAS domain AMJ96_PD00536 PF00672 HAMP domain AMJ96_PD00536 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00538 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00539 PF00005 ABC transporter AMJ96_PD00541 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMJ96_PD00542 PF00550 Phosphopantetheine attachment site AMJ96_PD00542 PF00668 Condensation domain AMJ96_PD00542 PF00975 Thioesterase domain AMJ96_PD00542 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PD00542 PF00501 AMP-binding enzyme AMJ96_PD00545 PF01554 MatE AMJ96_PD00546 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PD00549 PF01497 Periplasmic binding protein AMJ96_PD00550 PF01032 FecCD transport family AMJ96_PD00551 PF00106 short chain dehydrogenase AMJ96_PD00552 PF12833 Helix-turn-helix domain AMJ96_PD00552 PF12852 Cupin AMJ96_PD00554 PF00593 TonB dependent receptor AMJ96_PD00554 PF07715 TonB-dependent Receptor Plug Domain AMJ96_PD00556 PF00691 OmpA family AMJ96_PD00557 PF00011 Hsp20/alpha crystallin family AMJ96_PD00558 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PD00558 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMJ96_PD00558 PF07691 PA14 domain AMJ96_PD00558 PF14310 Fibronectin type III-like domain AMJ96_PD00559 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00561 PF03466 LysR substrate binding domain AMJ96_PD00564 PF05384 Sensor protein DegS AMJ96_PD00564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00564 PF07730 Histidine kinase AMJ96_PD00565 PF13407 Periplasmic binding protein domain AMJ96_PD00566 PF00005 ABC transporter AMJ96_PD00567 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00568 PF02653 Branched-chain amino acid transport system / permease component AMJ96_PD00572 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_PD00572 PF14760 Rnk N-terminus AMJ96_PD00573 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_PD00576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00576 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00576 PF00989 PAS fold AMJ96_PD00576 PF08447 PAS fold AMJ96_PD00576 PF13426 PAS domain AMJ96_PD00576 PF13493 Domain of unknown function (DUF4118) AMJ96_PD00577 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00577 PF00072 Response regulator receiver domain AMJ96_PD00579 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00579 PF00391 PEP-utilising enzyme, mobile domain AMJ96_PD00583 PF00487 Fatty acid desaturase AMJ96_PD00585 PF00313 'Cold-shock' DNA-binding domain AMJ96_PD00589 PF02530 Porin subfamily AMJ96_PD00590 PF12833 Helix-turn-helix domain AMJ96_PD00591 PF02233 NAD(P) transhydrogenase beta subunit AMJ96_PD00592 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_PD00592 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMJ96_PD00592 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_PD00593 PF00171 Aldehyde dehydrogenase family AMJ96_PD00594 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00594 PF07729 FCD domain AMJ96_PD00596 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00596 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00597 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00598 PF03928 Haem-degrading AMJ96_PD00599 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00599 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00600 PF13378 Enolase C-terminal domain-like AMJ96_PD00600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00601 PF08450 SMP-30/Gluconolactonase/LRE-like region AMJ96_PD00602 PF00248 Aldo/keto reductase family AMJ96_PD00603 PF17912 MalK OB fold domain AMJ96_PD00603 PF00005 ABC transporter AMJ96_PD00603 PF03459 TOBE domain AMJ96_PD00604 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00605 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00606 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00608 PF03737 Aldolase/RraA AMJ96_PD00610 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00610 PF07729 FCD domain AMJ96_PD00611 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PD00611 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00612 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00612 PF00005 ABC transporter AMJ96_PD00613 PF00005 ABC transporter AMJ96_PD00613 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00614 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00614 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PD00615 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00616 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00617 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_PD00617 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00618 PF13378 Enolase C-terminal domain-like AMJ96_PD00618 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00621 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00622 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00622 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJ96_PD00623 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00623 PF00005 ABC transporter AMJ96_PD00627 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00628 PF00970 Oxidoreductase FAD-binding domain AMJ96_PD00628 PF00175 Oxidoreductase NAD-binding domain AMJ96_PD00628 PF00042 Globin AMJ96_PD00631 PF01527 Transposase AMJ96_PD00632 PF05717 IS66 Orf2 like protein AMJ96_PD00633 PF13007 Transposase C of IS166 homeodomain AMJ96_PD00633 PF13817 IS66 C-terminal element AMJ96_PD00633 PF03050 Transposase IS66 family AMJ96_PD00633 PF13005 zinc-finger binding domain of transposase IS66 AMJ96_PD00642 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00642 PF00072 Response regulator receiver domain AMJ96_PD00644 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00644 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00644 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00645 PF00202 Aminotransferase class-III AMJ96_PD00647 PF00005 ABC transporter AMJ96_PD00647 PF08402 TOBE domain AMJ96_PD00648 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00651 PF00155 Aminotransferase class I and II AMJ96_PD00652 PF00072 Response regulator receiver domain AMJ96_PD00652 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00654 PF03389 MobA/MobL family AMJ96_PD00654 PF17841 BID domain of Bartonella effector protein (Bep) AMJ96_PD00654 PF01443 Viral (Superfamily 1) RNA helicase AMJ96_PD00656 PF02534 Type IV secretory system Conjugative DNA transfer AMJ96_PD00658 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PD00671 PF00437 Type II/IV secretion system protein AMJ96_PD00672 PF03743 Bacterial conjugation TrbI-like protein AMJ96_PD00673 PF03524 Conjugal transfer protein AMJ96_PD00674 PF04335 VirB8 protein AMJ96_PD00676 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMJ96_PD00679 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMJ96_PD00680 PF05101 Type IV secretory pathway, VirB3-like protein AMJ96_PD00681 PF04956 TrbC/VIRB2 family AMJ96_PD00682 PF01464 Transglycosylase SLT domain AMJ96_PD00686 PF17762 HTH domain found in ParB protein AMJ96_PD00686 PF02195 ParB-like nuclease domain AMJ96_PD00690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00692 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00693 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00696 PF00005 ABC transporter AMJ96_PD00696 PF17912 MalK OB fold domain AMJ96_PD00696 PF03459 TOBE domain AMJ96_PD00697 PF13614 AAA domain AMJ96_PD00697 PF00376 MerR family regulatory protein AMJ96_PD00698 PF02195 ParB-like nuclease domain AMJ96_PD00698 PF07506 RepB plasmid partitioning protein AMJ96_PD00699 PF11800 Replication protein C C-terminal region AMJ96_PD00699 PF03428 Replication protein C N-terminal domain