locus-tag	class	description
AMJ96_CH00001	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMJ96_CH00002	COG0424	maF-like protein
AMJ96_CH00003	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMJ96_CH00004	COG0237	dephospho-CoA kinase activity
AMJ96_CH00005	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMJ96_CH00006	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMJ96_CH00009	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AMJ96_CH00012	COG0187	DNA topoisomerase II activity
AMJ96_CH00015	COG0435	Glutathione S-transferase
AMJ96_CH00016	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMJ96_CH00020	COG0135	phosphoribosylanthranilate isomerase activity
AMJ96_CH00021	COG0133	tryptophan synthase activity
AMJ96_CH00022	COG0159	tryptophan synthase activity
AMJ96_CH00023	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AMJ96_CH00024	COG0285	dihydrofolate synthase activity
AMJ96_CH00027	COG2887	Belongs to the helicase family. UvrD subfamily
AMJ96_CH00028	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMJ96_CH00029	COG3178	'Phosphotransferase
AMJ96_CH00030	COG2205	protein histidine kinase activity
AMJ96_CH00031	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMJ96_CH00032	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJ96_CH00033	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMJ96_CH00033	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJ96_CH00035	COG0642	Histidine kinase
AMJ96_CH00036	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH00037	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
AMJ96_CH00039	COG3145	DNA-N1-methyladenine dioxygenase activity
AMJ96_CH00040	COG1072	(Pantothenic acid kinase))
AMJ96_CH00041	COG0140	phosphoribosyl-ATP diphosphatase activity
AMJ96_CH00042	COG0107	imidazoleglycerol-phosphate synthase activity
AMJ96_CH00043	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AMJ96_CH00046	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMJ96_CH00048	COG0131	Imidazoleglycerol-phosphate dehydratase
AMJ96_CH00049	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMJ96_CH00050	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMJ96_CH00052	COG2124	cytochrome p450
AMJ96_CH00053	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMJ96_CH00056	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMJ96_CH00058	COG1643	Atp-dependent helicase
AMJ96_CH00059	COG2423	ornithine cyclodeaminase activity
AMJ96_CH00068	COG2197	response regulator
AMJ96_CH00071	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMJ96_CH00072	COG1215	transferase activity, transferring glycosyl groups
AMJ96_CH00075	COG2182	Extracellular solute-binding protein
AMJ96_CH00079	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH00082	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH00083	COG1309	transcriptional regulator
AMJ96_CH00085	COG1175	transmembrane transport
AMJ96_CH00086	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH00088	COG3842	ATPase activity
AMJ96_CH00091	COG0246	Mannitol dehydrogenase
AMJ96_CH00092	COG1904	glucuronate isomerase
AMJ96_CH00093	COG2900	Belongs to the SlyX family
AMJ96_CH00094	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH00095	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AMJ96_CH00099	COG0539	negative regulation of cytoplasmic translation
AMJ96_CH00100	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMJ96_CH00109	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJ96_CH00111	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJ96_CH00113	COG2813	Specifically methylates the guanine in position
AMJ96_CH00114	COG1185	polyribonucleotide nucleotidyltransferase activity
AMJ96_CH00115	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMJ96_CH00116	COG2267	carboxylic ester hydrolase activity
AMJ96_CH00117	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMJ96_CH00118	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMJ96_CH00119	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMJ96_CH00122	COG0779	Required for maturation of 30S ribosomal subunits
AMJ96_CH00124	COG2814	Major facilitator Superfamily
AMJ96_CH00127	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMJ96_CH00128	COG2258	MOSC domain
AMJ96_CH00129	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMJ96_CH00130	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMJ96_CH00133	COG2816	NAD+ diphosphatase activity
AMJ96_CH00134	COG2378	regulation of single-species biofilm formation
AMJ96_CH00137	COG0077	Prephenate dehydratase
AMJ96_CH00137	COG1605	Chorismate mutase
AMJ96_CH00138	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMJ96_CH00139	COG3474	cytochrome
AMJ96_CH00140	COG0679	Auxin Efflux Carrier
AMJ96_CH00141	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_CH00146	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMJ96_CH00147	COG1396	sequence-specific DNA binding
AMJ96_CH00149	COG0484	heat shock protein binding
AMJ96_CH00150	COG0443	Heat shock 70 kDa protein
AMJ96_CH00151	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMJ96_CH00154	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMJ96_CH00155	COG5001	Diguanylate cyclase
AMJ96_CH00155	COG3300	MHYT domain
AMJ96_CH00158	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMJ96_CH00158	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMJ96_CH00159	COG1674	ftsk spoiiie
AMJ96_CH00160	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AMJ96_CH00160	COG0456	acetyltransferase
AMJ96_CH00161	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
AMJ96_CH00162	COG3454	Phosphonate metabolism
AMJ96_CH00163	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
AMJ96_CH00164	COG3639	organic phosphonate transmembrane transporter activity
AMJ96_CH00165	COG3639	organic phosphonate transmembrane transporter activity
AMJ96_CH00167	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AMJ96_CH00169	COG4778	phosphonate C-P lyase system protein PhnL
AMJ96_CH00170	COG4107	phosphonate C-P lyase system protein PhnK
AMJ96_CH00171	COG3627	carbon phosphorus lyase activity
AMJ96_CH00172	COG3626	phosphonate metabolism
AMJ96_CH00173	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
AMJ96_CH00174	COG3624	Phosphonate C-P lyase system protein PhnG
AMJ96_CH00175	COG2188	Transcriptional regulator
AMJ96_CH00176	COG0588	phosphoglycerate mutase activity
AMJ96_CH00177	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMJ96_CH00178	COG1132	(ABC) transporter
AMJ96_CH00179	COG0837	glucose binding
AMJ96_CH00180	COG1803	Methylglyoxal synthase
AMJ96_CH00181	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
AMJ96_CH00182	COG4166	transmembrane transport
AMJ96_CH00183	COG4174	ABC transporter (Permease)
AMJ96_CH00184	COG4239	(ABC) transporter, permease
AMJ96_CH00185	COG4172	Belongs to the ABC transporter superfamily
AMJ96_CH00188	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMJ96_CH00198	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AMJ96_CH00199	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
AMJ96_CH00200	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AMJ96_CH00201	COG3577	Aspartyl protease
AMJ96_CH00202	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMJ96_CH00203	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMJ96_CH00204	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AMJ96_CH00211	COG4964	Belongs to the GSP D family
AMJ96_CH00217	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH00219	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMJ96_CH00222	COG0154	amidase activity
AMJ96_CH00223	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_CH00225	COG0747	negative chemotaxis
AMJ96_CH00228	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJ96_CH00230	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJ96_CH00232	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMJ96_CH00235	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMJ96_CH00237	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
AMJ96_CH00240	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMJ96_CH00242	COG2089	acid synthase
AMJ96_CH00243	COG0028	Belongs to the TPP enzyme family
AMJ96_CH00244	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJ96_CH00248	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_CH00258	COG0481	GTPase activity
AMJ96_CH00260	COG1396	sequence-specific DNA binding
AMJ96_CH00264	COG2137	regulation of response to DNA damage stimulus
AMJ96_CH00271	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMJ96_CH00273	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AMJ96_CH00274	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMJ96_CH00275	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMJ96_CH00276	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJ96_CH00276	COG0072	phenylalanine-tRNA ligase activity
AMJ96_CH00278	COG0667	Aldo Keto reductase
AMJ96_CH00280	COG3685	Protein conserved in bacteria
AMJ96_CH00282	COG0456	acetyltransferase
AMJ96_CH00289	COG1570	exodeoxyribonuclease VII activity
AMJ96_CH00290	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMJ96_CH00291	COG1846	Transcriptional regulator
AMJ96_CH00292	COG0697	spore germination
AMJ96_CH00293	COG2309	aminopeptidase activity
AMJ96_CH00294	COG0625	glutathione transferase activity
AMJ96_CH00296	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMJ96_CH00297	COG1393	Belongs to the ArsC family
AMJ96_CH00299	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMJ96_CH00300	COG4221	oxidoreductase activity
AMJ96_CH00301	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH00303	COG0583	DNA-binding transcription factor activity
AMJ96_CH00304	COG2207	Transcriptional regulator
AMJ96_CH00305	COG1881	PFAM PEBP family protein
AMJ96_CH00307	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AMJ96_CH00310	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJ96_CH00310	COG0519	Catalyzes the synthesis of GMP from XMP
AMJ96_CH00319	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMJ96_CH00321	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMJ96_CH00323	COG1968	undecaprenyl-diphosphatase activity
AMJ96_CH00329	COG0284	orotidine-5'-phosphate decarboxylase activity
AMJ96_CH00331	COG3963	phosphatidate phosphatase activity
AMJ96_CH00333	COG0592	DNA-directed DNA polymerase activity
AMJ96_CH00334	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AMJ96_CH00335	COG0792	nuclease activity
AMJ96_CH00337	COG0189	ligase activity
AMJ96_CH00340	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJ96_CH00341	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH00342	COG0697	spore germination
AMJ96_CH00343	COG1522	sequence-specific DNA binding
AMJ96_CH00345	COG0756	dUTP diphosphatase activity
AMJ96_CH00346	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMJ96_CH00352	COG2807	transmembrane transport
AMJ96_CH00356	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMJ96_CH00358	COG0583	DNA-binding transcription factor activity
AMJ96_CH00359	COG2814	Major facilitator Superfamily
AMJ96_CH00361	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMJ96_CH00365	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMJ96_CH00367	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMJ96_CH00368	COG2226	methyltransferase
AMJ96_CH00369	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMJ96_CH00370	COG1024	Enoyl-CoA hydratase
AMJ96_CH00371	COG0268	Binds directly to 16S ribosomal RNA
AMJ96_CH00372	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMJ96_CH00374	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJ96_CH00375	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMJ96_CH00377	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMJ96_CH00378	COG1420	regulation of RNA biosynthetic process
AMJ96_CH00379	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMJ96_CH00380	COG1957	nucleoside hydrolase
AMJ96_CH00381	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJ96_CH00384	COG0596	Alpha beta hydrolase
AMJ96_CH00386	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMJ96_CH00387	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMJ96_CH00389	COG1396	sequence-specific DNA binding
AMJ96_CH00390	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMJ96_CH00392	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMJ96_CH00393	COG1702	phosphate starvation-inducible protein PhoH
AMJ96_CH00394	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMJ96_CH00399	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMJ96_CH00401	COG0180	Tryptophanyl-tRNA synthetase
AMJ96_CH00407	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMJ96_CH00408	COG0281	malic enzyme
AMJ96_CH00408	COG0280	phosphate acetyltransferase
AMJ96_CH00410	COG2205	protein histidine kinase activity
AMJ96_CH00410	COG5002	protein histidine kinase activity
AMJ96_CH00410	COG0784	Response regulator, receiver
AMJ96_CH00411	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AMJ96_CH00418	COG0776	regulation of translation
AMJ96_CH00421	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMJ96_CH00422	COG1137	ATPase activity
AMJ96_CH00424	COG0697	spore germination
AMJ96_CH00425	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AMJ96_CH00426	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJ96_CH00427	COG0840	transmembrane signaling receptor activity
AMJ96_CH00428	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_CH00430	COG0840	transmembrane signaling receptor activity
AMJ96_CH00431	COG0242	peptide deformylase activity
AMJ96_CH00434	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMJ96_CH00435	COG0101	tRNA pseudouridine synthase activity
AMJ96_CH00437	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMJ96_CH00438	COG2171	N-acyltransferase activity
AMJ96_CH00442	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMJ96_CH00442	COG2169	Transcriptional regulator
AMJ96_CH00444	COG1304	FMN binding
AMJ96_CH00447	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMJ96_CH00448	COG5484	DNA packaging
AMJ96_CH00450	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AMJ96_CH00451	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMJ96_CH00452	COG0706	membrane insertase activity
AMJ96_CH00453	COG0594	ribonuclease P activity
AMJ96_CH00454	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AMJ96_CH00456	COG0840	transmembrane signaling receptor activity
AMJ96_CH00456	COG2972	Histidine kinase
AMJ96_CH00457	COG3852	Histidine kinase
AMJ96_CH00466	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMJ96_CH00467	COG0667	Aldo Keto reductase
AMJ96_CH00469	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH00470	COG3938	Belongs to the proline racemase family
AMJ96_CH00474	COG1309	transcriptional regulator
AMJ96_CH00478	COG3300	MHYT domain
AMJ96_CH00478	COG5001	Diguanylate cyclase
AMJ96_CH00479	COG0604	alcohol dehydrogenase
AMJ96_CH00481	COG3546	catalase activity
AMJ96_CH00488	COG1072	(Pantothenic acid kinase))
AMJ96_CH00489	COG0418	dihydroorotase activity
AMJ96_CH00492	COG1309	transcriptional regulator
AMJ96_CH00493	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMJ96_CH00495	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AMJ96_CH00496	COG0166	Belongs to the GPI family
AMJ96_CH00497	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_CH00501	COG1174	glycine betaine transport
AMJ96_CH00502	COG1125	glycine betaine transport
AMJ96_CH00503	COG1174	glycine betaine transport
AMJ96_CH00504	COG1732	Glycine betaine
AMJ96_CH00506	COG0583	DNA-binding transcription factor activity
AMJ96_CH00507	COG3142	Participates in the control of copper homeostasis
AMJ96_CH00508	COG1063	alcohol dehydrogenase
AMJ96_CH00509	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH00514	COG2721	sulfolactate sulfo-lyase activity
AMJ96_CH00516	COG4178	(ABC) transporter
AMJ96_CH00517	COG0477	Major facilitator Superfamily
AMJ96_CH00523	COG2326	polyphosphate kinase activity
AMJ96_CH00524	COG5002	protein histidine kinase activity
AMJ96_CH00525	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMJ96_CH00526	COG0573	inorganic phosphate transmembrane transporter activity
AMJ96_CH00528	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMJ96_CH00529	COG0704	Plays a role in the regulation of phosphate uptake
AMJ96_CH00530	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH00533	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJ96_CH00534	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMJ96_CH00535	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMJ96_CH00536	COG2967	ApaG domain
AMJ96_CH00538	COG0717	Belongs to the dCTP deaminase family
AMJ96_CH00543	COG4221	oxidoreductase activity
AMJ96_CH00546	COG0840	transmembrane signaling receptor activity
AMJ96_CH00548	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH00555	COG0167	dihydroorotate dehydrogenase activity
AMJ96_CH00556	COG0534	Mate efflux family protein
AMJ96_CH00562	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMJ96_CH00563	COG1959	2 iron, 2 sulfur cluster binding
AMJ96_CH00565	COG1201	RNA secondary structure unwinding
AMJ96_CH00572	COG0730	response to heat
AMJ96_CH00575	COG1960	acyl-CoA dehydrogenase activity
AMJ96_CH00576	COG0183	Belongs to the thiolase family
AMJ96_CH00577	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJ96_CH00577	COG1024	Enoyl-CoA hydratase
AMJ96_CH00578	COG1278	Cold shock
AMJ96_CH00584	COG0784	Response regulator, receiver
AMJ96_CH00584	COG2205	protein histidine kinase activity
AMJ96_CH00584	COG2198	Histidine kinase
AMJ96_CH00585	COG1970	mechanosensitive ion channel activity
AMJ96_CH00588	COG5001	Diguanylate cyclase
AMJ96_CH00590	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_CH00597	COG0582	viral genome integration into host DNA
AMJ96_CH00615	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMJ96_CH00618	COG5328	Belongs to the UPF0262 family
AMJ96_CH00619	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMJ96_CH00620	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AMJ96_CH00621	COG0424	maF-like protein
AMJ96_CH00622	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMJ96_CH00625	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMJ96_CH00632	COG3220	belongs to the UPF0276 family
AMJ96_CH00637	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AMJ96_CH00640	COG0251	oxidation-reduction process
AMJ96_CH00641	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH00643	COG0444	Belongs to the ABC transporter superfamily
AMJ96_CH00644	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH00648	COG2186	Transcriptional regulator
AMJ96_CH00649	COG1609	Transcriptional regulator
AMJ96_CH00650	COG1609	Transcriptional regulator
AMJ96_CH00652	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH00654	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
AMJ96_CH00656	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
AMJ96_CH00662	COG0346	lactoylglutathione lyase activity
AMJ96_CH00663	COG4251	negative regulation of phosphorylation
AMJ96_CH00665	COG4251	negative regulation of phosphorylation
AMJ96_CH00667	COG2197	response regulator
AMJ96_CH00672	COG4651	solute:proton antiporter activity
AMJ96_CH00672	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJ96_CH00674	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJ96_CH00675	COG0840	transmembrane signaling receptor activity
AMJ96_CH00678	COG0643	Histidine kinase
AMJ96_CH00678	COG2198	Histidine kinase
AMJ96_CH00679	COG0835	chemotaxis
AMJ96_CH00680	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMJ96_CH00681	COG2201	protein-glutamate methylesterase activity
AMJ96_CH00682	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH00683	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMJ96_CH00685	COG1766	The M ring may be actively involved in energy transduction
AMJ96_CH00686	COG2771	luxR family
AMJ96_CH00689	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMJ96_CH00691	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJ96_CH00692	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJ96_CH00693	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJ96_CH00694	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMJ96_CH00695	COG4786	Flagellar basal body rod
AMJ96_CH00696	COG1157	protein secretion by the type III secretion system
AMJ96_CH00698	COG1815	bacterial-type flagellum-dependent cell motility
AMJ96_CH00699	COG1558	bacterial-type flagellum-dependent cell motility
AMJ96_CH00700	COG1677	Flagellar hook-basal body complex protein FliE
AMJ96_CH00701	COG4786	Flagellar basal body rod
AMJ96_CH00702	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
AMJ96_CH00703	COG1706	bacterial-type flagellum-dependent cell motility
AMJ96_CH00705	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMJ96_CH00707	COG1338	Plays a role in the flagellum-specific transport system
AMJ96_CH00709	COG1522	sequence-specific DNA binding
AMJ96_CH00714	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMJ96_CH00721	COG1749	Flagellar hook protein flgE
AMJ96_CH00722	COG1256	bacterial-type flagellum assembly
AMJ96_CH00725	COG5443	negative regulation of bacterial-type flagellum assembly
AMJ96_CH00727	COG4794	Type iii secretion
AMJ96_CH00728	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMJ96_CH00729	COG1684	flagellar biosynthetic protein fliR
AMJ96_CH00734	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AMJ96_CH00736	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMJ96_CH00737	COG1609	Transcriptional regulator
AMJ96_CH00738	COG1653	transport
AMJ96_CH00739	COG1175	transmembrane transport
AMJ96_CH00740	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH00741	COG0366	Alpha amylase catalytic
AMJ96_CH00742	COG3842	ATPase activity
AMJ96_CH00744	COG0129	dihydroxy-acid dehydratase activity
AMJ96_CH00745	COG0363	glucosamine-6-phosphate deaminase activity
AMJ96_CH00746	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMJ96_CH00747	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH00748	COG0174	glutamine synthetase
AMJ96_CH00749	COG2081	HI0933 family
AMJ96_CH00751	COG2972	Histidine kinase
AMJ96_CH00751	COG0840	transmembrane signaling receptor activity
AMJ96_CH00752	COG0840	transmembrane signaling receptor activity
AMJ96_CH00756	COG2224	Isocitrate lyase
AMJ96_CH00758	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMJ96_CH00759	COG3842	ATPase activity
AMJ96_CH00760	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_CH00761	COG1177	transmembrane transport
AMJ96_CH00763	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJ96_CH00765	COG2205	protein histidine kinase activity
AMJ96_CH00768	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AMJ96_CH00774	COG1959	2 iron, 2 sulfur cluster binding
AMJ96_CH00775	COG0747	negative chemotaxis
AMJ96_CH00776	COG0601	transmembrane transport
AMJ96_CH00777	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_CH00778	COG0444	Belongs to the ABC transporter superfamily
AMJ96_CH00779	COG4608	Belongs to the ABC transporter superfamily
AMJ96_CH00780	COG3265	gluconokinase activity
AMJ96_CH00781	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH00782	COG1755	Isoprenylcysteine carboxyl methyltransferase
AMJ96_CH00794	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMJ96_CH00796	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJ96_CH00797	COG2089	acid synthase
AMJ96_CH00798	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
AMJ96_CH00801	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AMJ96_CH00807	COG1442	glycosyl transferase family 8
AMJ96_CH00810	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH00811	COG2813	Specifically methylates the guanine in position
AMJ96_CH00814	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMJ96_CH00816	COG0477	Major facilitator Superfamily
AMJ96_CH00822	COG0583	DNA-binding transcription factor activity
AMJ96_CH00827	COG0306	phosphate transporter
AMJ96_CH00829	COG0583	DNA-binding transcription factor activity
AMJ96_CH00830	COG0277	FAD linked oxidase domain protein
AMJ96_CH00831	COG0277	FAD linked oxidase domain protein
AMJ96_CH00832	COG0247	lactate metabolic process
AMJ96_CH00835	COG1388	LysM domain
AMJ96_CH00835	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH00836	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH00837	COG2818	Glycosylase
AMJ96_CH00840	COG0667	Aldo Keto reductase
AMJ96_CH00844	COG0124	histidyl-tRNA synthetase
AMJ96_CH00845	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AMJ96_CH00846	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMJ96_CH00847	COG2259	Doxx family
AMJ96_CH00848	COG0625	glutathione transferase activity
AMJ96_CH00850	COG0459	protein refolding
AMJ96_CH00851	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMJ96_CH00853	COG0196	riboflavin kinase activity
AMJ96_CH00856	COG0590	tRNA wobble adenosine to inosine editing
AMJ96_CH00857	COG1187	pseudouridine synthase activity
AMJ96_CH00858	COG0742	ribosomal rna small subunit methyltransferase
AMJ96_CH00859	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMJ96_CH00863	COG0312	modulator of DNA gyrase
AMJ96_CH00864	COG0483	inositol monophosphate 1-phosphatase activity
AMJ96_CH00866	COG1519	Transferase
AMJ96_CH00868	COG1663	tetraacyldisaccharide 4'-kinase activity
AMJ96_CH00870	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMJ96_CH00871	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH00872	COG5001	Diguanylate cyclase
AMJ96_CH00872	COG3300	MHYT domain
AMJ96_CH00874	COG3386	PFAM SMP-30 Gluconolaconase
AMJ96_CH00875	COG0800	Aldolase
AMJ96_CH00876	COG3734	2-keto-3-deoxy-galactonokinase
AMJ96_CH00877	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH00878	COG1414	Transcriptional regulator
AMJ96_CH00879	COG2197	response regulator
AMJ96_CH00880	COG0489	protein tyrosine kinase activity
AMJ96_CH00881	COG0598	Magnesium transport protein CorA
AMJ96_CH00882	COG3158	transport of potassium into the cell
AMJ96_CH00885	COG0356	it plays a direct role in the translocation of protons across the membrane
AMJ96_CH00887	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMJ96_CH00888	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMJ96_CH00889	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMJ96_CH00893	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMJ96_CH00894	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMJ96_CH00896	COG0142	geranyltranstransferase activity
AMJ96_CH00899	COG1914	H( )-stimulated, divalent metal cation uptake system
AMJ96_CH00902	COG0752	glycyl-tRNA synthetase alpha subunit
AMJ96_CH00903	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AMJ96_CH00904	COG1704	LemA family
AMJ96_CH00905	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMJ96_CH00907	COG0151	Belongs to the GarS family
AMJ96_CH00909	COG0840	transmembrane signaling receptor activity
AMJ96_CH00910	COG1683	Conserved Protein
AMJ96_CH00911	COG0751	glycine-tRNA ligase activity
AMJ96_CH00912	COG2183	response to ionizing radiation
AMJ96_CH00913	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMJ96_CH00914	COG0406	alpha-ribazole phosphatase activity
AMJ96_CH00920	COG0009	L-threonylcarbamoyladenylate synthase
AMJ96_CH00922	COG4638	Rieske (2fe-2S)
AMJ96_CH00926	COG1960	acyl-CoA dehydrogenase activity
AMJ96_CH00929	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH00930	COG1733	regulation of RNA biosynthetic process
AMJ96_CH00931	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMJ96_CH00933	COG0840	transmembrane signaling receptor activity
AMJ96_CH00934	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMJ96_CH00936	COG1741	Belongs to the pirin family
AMJ96_CH00938	COG1722	exodeoxyribonuclease VII activity
AMJ96_CH00939	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMJ96_CH00941	COG1802	Transcriptional regulator
AMJ96_CH00943	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_CH00946	COG0662	Cupin 2, conserved barrel domain protein
AMJ96_CH00947	COG0583	DNA-binding transcription factor activity
AMJ96_CH00949	COG1268	BioY protein
AMJ96_CH00950	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AMJ96_CH00951	COG1122	ATPase activity
AMJ96_CH00952	COG3214	Protein conserved in bacteria
AMJ96_CH00953	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJ96_CH00953	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJ96_CH00954	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMJ96_CH00959	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJ96_CH00960	COG0484	heat shock protein binding
AMJ96_CH00962	COG0259	pyridoxamine-phosphate oxidase activity
AMJ96_CH00964	COG1686	Belongs to the peptidase S11 family
AMJ96_CH00966	COG0306	phosphate transporter
AMJ96_CH00967	COG1392	Phosphate transport regulator
AMJ96_CH00970	COG0312	modulator of DNA gyrase
AMJ96_CH00972	COG1565	acr, cog1565
AMJ96_CH00972	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJ96_CH00973	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJ96_CH00974	COG0109	protoheme IX farnesyltransferase activity
AMJ96_CH00976	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMJ96_CH00978	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMJ96_CH00981	COG3346	SURF1 family
AMJ96_CH00982	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMJ96_CH00983	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMJ96_CH00984	COG0328	RNA-DNA hybrid ribonuclease activity
AMJ96_CH00988	COG1678	Uncharacterized ACR, COG1678
AMJ96_CH00990	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMJ96_CH00990	COG0678	peroxiredoxin activity
AMJ96_CH00992	COG1121	(ABC) transporter
AMJ96_CH00993	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMJ96_CH00994	COG0803	Belongs to the bacterial solute-binding protein 9 family
AMJ96_CH00998	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMJ96_CH00999	COG0612	Peptidase, M16
AMJ96_CH01002	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMJ96_CH01003	COG2814	Major facilitator Superfamily
AMJ96_CH01012	COG2189	Belongs to the N(4) N(6)-methyltransferase family
AMJ96_CH01015	COG1194	a g-specific adenine glycosylase
AMJ96_CH01020	COG1196	nuclear chromosome segregation
AMJ96_CH01021	COG0625	glutathione transferase activity
AMJ96_CH01022	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMJ96_CH01022	COG0574	Belongs to the PEP-utilizing enzyme family
AMJ96_CH01034	COG1715	Restriction endonuclease
AMJ96_CH01037	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AMJ96_CH01038	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
AMJ96_CH01047	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_CH01047	COG0204	Acyl-transferase
AMJ96_CH01050	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJ96_CH01054	COG1733	regulation of RNA biosynthetic process
AMJ96_CH01073	COG0640	Transcriptional regulator
AMJ96_CH01074	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01080	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01081	COG2207	Transcriptional regulator
AMJ96_CH01082	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01090	COG0659	secondary active sulfate transmembrane transporter activity
AMJ96_CH01091	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMJ96_CH01100	COG0640	Transcriptional regulator
AMJ96_CH01103	COG0640	Transcriptional regulator
AMJ96_CH01137	COG0110	maltose O-acetyltransferase activity
AMJ96_CH01152	COG4106	trans-aconitate 2-methyltransferase activity
AMJ96_CH01157	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMJ96_CH01158	COG1088	dTDP-glucose 4,6-dehydratase activity
AMJ96_CH01161	COG1609	Transcriptional regulator
AMJ96_CH01162	COG0583	DNA-binding transcription factor activity
AMJ96_CH01171	COG0175	sulfate reduction
AMJ96_CH01172	COG0175	sulfate reduction
AMJ96_CH01173	COG1959	2 iron, 2 sulfur cluster binding
AMJ96_CH01174	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AMJ96_CH01175	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH01176	COG1309	transcriptional regulator
AMJ96_CH01179	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMJ96_CH01183	COG2814	Major facilitator Superfamily
AMJ96_CH01185	COG1349	DNA-binding transcription factor activity
AMJ96_CH01190	COG0842	Transport permease protein
AMJ96_CH01190	COG1129	ABC transporter
AMJ96_CH01195	COG0583	DNA-binding transcription factor activity
AMJ96_CH01196	COG0435	Glutathione S-transferase
AMJ96_CH01198	COG1881	PFAM PEBP family protein
AMJ96_CH01201	COG1672	PFAM Archaeal ATPase
AMJ96_CH01201	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AMJ96_CH01204	COG0584	glycerophosphoryl diester phosphodiesterase
AMJ96_CH01207	COG1793	dna ligase
AMJ96_CH01209	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH01210	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH01211	COG1278	Cold shock
AMJ96_CH01213	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMJ96_CH01215	COG1846	Transcriptional regulator
AMJ96_CH01216	COG1764	response to oxidative stress
AMJ96_CH01221	COG0488	(ABC) transporter
AMJ96_CH01222	COG0488	(ABC) transporter
AMJ96_CH01223	COG0433	COG0433 Predicted ATPase
AMJ96_CH01225	COG1051	belongs to the nudix hydrolase family
AMJ96_CH01227	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMJ96_CH01228	COG4106	trans-aconitate 2-methyltransferase activity
AMJ96_CH01229	COG1253	flavin adenine dinucleotide binding
AMJ96_CH01232	COG1064	alcohol dehydrogenase
AMJ96_CH01233	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMJ96_CH01234	COG0583	DNA-binding transcription factor activity
AMJ96_CH01239	COG0625	glutathione transferase activity
AMJ96_CH01241	COG2814	Major facilitator Superfamily
AMJ96_CH01243	COG0730	response to heat
AMJ96_CH01246	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMJ96_CH01249	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH01253	COG0583	DNA-binding transcription factor activity
AMJ96_CH01255	COG2010	Cytochrome c
AMJ96_CH01264	COG4993	Dehydrogenase
AMJ96_CH01265	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMJ96_CH01266	COG0477	Major facilitator Superfamily
AMJ96_CH01274	COG2514	catechol 2,3-dioxygenase activity
AMJ96_CH01276	COG1272	protein, Hemolysin III
AMJ96_CH01279	COG5425	PFAM Usg family protein
AMJ96_CH01280	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMJ96_CH01281	COG0459	protein refolding
AMJ96_CH01283	COG0438	transferase activity, transferring glycosyl groups
AMJ96_CH01286	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJ96_CH01287	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJ96_CH01289	COG0519	Catalyzes the synthesis of GMP from XMP
AMJ96_CH01290	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJ96_CH01293	COG4957	zinc ion binding
AMJ96_CH01294	COG2166	iron-sulfur cluster assembly
AMJ96_CH01297	COG2205	protein histidine kinase activity
AMJ96_CH01299	COG0840	transmembrane signaling receptor activity
AMJ96_CH01306	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMJ96_CH01307	COG2983	Belongs to the UPF0260 family
AMJ96_CH01309	COG4221	oxidoreductase activity
AMJ96_CH01314	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJ96_CH01317	COG0625	glutathione transferase activity
AMJ96_CH01320	COG1309	transcriptional regulator
AMJ96_CH01326	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH01327	COG2205	protein histidine kinase activity
AMJ96_CH01329	COG4235	cytochrome complex assembly
AMJ96_CH01330	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMJ96_CH01331	COG1138	Cytochrome C-type biogenesis protein
AMJ96_CH01332	COG3088	subunit of a heme lyase
AMJ96_CH01333	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJ96_CH01334	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH01335	COG2205	protein histidine kinase activity
AMJ96_CH01336	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMJ96_CH01337	COG2202	Pas domain
AMJ96_CH01337	COG2205	protein histidine kinase activity
AMJ96_CH01338	COG0308	aminopeptidase N
AMJ96_CH01344	COG0443	Heat shock 70 kDa protein
AMJ96_CH01348	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01350	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH01353	COG2239	Acts as a magnesium transporter
AMJ96_CH01354	COG2814	Major facilitator Superfamily
AMJ96_CH01356	COG0174	glutamine synthetase
AMJ96_CH01358	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJ96_CH01359	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJ96_CH01360	COG0463	Glycosyl transferase, family 2
AMJ96_CH01361	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJ96_CH01363	COG4941	Belongs to the sigma-70 factor family
AMJ96_CH01365	COG3795	YCII-related domain
AMJ96_CH01366	COG3795	YCII-related domain
AMJ96_CH01368	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMJ96_CH01384	COG3718	enzyme involved in inositol metabolism
AMJ96_CH01385	COG1082	Xylose isomerase domain protein TIM barrel
AMJ96_CH01387	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_CH01389	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH01393	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AMJ96_CH01395	COG0297	glycogen (starch) synthase activity
AMJ96_CH01397	COG1215	transferase activity, transferring glycosyl groups
AMJ96_CH01403	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH01406	COG2197	response regulator
AMJ96_CH01408	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH01411	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH01412	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AMJ96_CH01416	COG0523	cobalamin synthesis protein
AMJ96_CH01418	COG0523	cobalamin synthesis protein
AMJ96_CH01425	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH01426	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMJ96_CH01428	COG1758	RNA polymerase activity
AMJ96_CH01432	COG0736	holo-[acyl-carrier-protein] synthase activity
AMJ96_CH01433	COG0681	Belongs to the peptidase S26 family
AMJ96_CH01434	COG0571	ribonuclease III activity
AMJ96_CH01435	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMJ96_CH01436	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJ96_CH01438	COG1381	Involved in DNA repair and RecF pathway recombination
AMJ96_CH01439	COG0656	L-ascorbic acid biosynthetic process
AMJ96_CH01441	COG1418	mRNA catabolic process
AMJ96_CH01442	COG5001	Diguanylate cyclase
AMJ96_CH01442	COG3300	MHYT domain
AMJ96_CH01444	COG2032	superoxide dismutase activity
AMJ96_CH01445	COG0668	transmembrane transport
AMJ96_CH01447	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
AMJ96_CH01448	COG0354	folic acid binding
AMJ96_CH01452	COG1051	belongs to the nudix hydrolase family
AMJ96_CH01453	COG1742	UPF0060 membrane protein
AMJ96_CH01457	COG0688	phosphatidylethanolamine metabolic process
AMJ96_CH01458	COG0640	Transcriptional regulator
AMJ96_CH01460	COG0740	serine-type endopeptidase activity
AMJ96_CH01461	COG5265	(ABC) transporter
AMJ96_CH01465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_CH01469	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJ96_CH01474	COG2852	Protein conserved in bacteria
AMJ96_CH01475	COG0215	cysteine-tRNA ligase activity
AMJ96_CH01478	COG4221	oxidoreductase activity
AMJ96_CH01479	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AMJ96_CH01480	COG1286	toxin biosynthetic process
AMJ96_CH01482	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH01483	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMJ96_CH01487	COG0305	Participates in initiation and elongation during chromosome replication
AMJ96_CH01488	COG0359	binds to the 23S rRNA
AMJ96_CH01490	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMJ96_CH01491	COG0360	Binds together with S18 to 16S ribosomal RNA
AMJ96_CH01492	COG0667	Aldo Keto reductase
AMJ96_CH01493	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMJ96_CH01495	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMJ96_CH01496	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMJ96_CH01497	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMJ96_CH01498	COG1561	YicC-like family, N-terminal region
AMJ96_CH01499	COG0194	GDP metabolic process
AMJ96_CH01500	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMJ96_CH01501	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMJ96_CH01503	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMJ96_CH01506	COG0671	phosphoesterase, PA-phosphatase related
AMJ96_CH01507	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMJ96_CH01510	COG1505	serine-type exopeptidase activity
AMJ96_CH01512	COG0488	(ABC) transporter
AMJ96_CH01513	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH01513	COG3706	GGDEF domain
AMJ96_CH01516	COG0105	UTP biosynthetic process
AMJ96_CH01520	COG0314	molybdopterin synthase activity
AMJ96_CH01522	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMJ96_CH01523	COG0322	excinuclease ABC activity
AMJ96_CH01524	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01527	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMJ96_CH01528	COG0243	molybdopterin cofactor binding
AMJ96_CH01529	COG0494	nUDIX hydrolase
AMJ96_CH01530	COG3454	Phosphonate metabolism
AMJ96_CH01531	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMJ96_CH01532	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMJ96_CH01533	COG0628	permease
AMJ96_CH01535	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMJ96_CH01538	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AMJ96_CH01539	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AMJ96_CH01540	COG2132	Multicopper oxidase
AMJ96_CH01541	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMJ96_CH01543	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AMJ96_CH01546	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMJ96_CH01548	COG0113	porphobilinogen synthase activity
AMJ96_CH01552	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJ96_CH01553	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMJ96_CH01554	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJ96_CH01554	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJ96_CH01556	COG0519	Catalyzes the synthesis of GMP from XMP
AMJ96_CH01559	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMJ96_CH01560	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMJ96_CH01561	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
AMJ96_CH01565	COG0416	fatty acid biosynthetic process
AMJ96_CH01566	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMJ96_CH01567	COG0776	regulation of translation
AMJ96_CH01573	COG1215	transferase activity, transferring glycosyl groups
AMJ96_CH01575	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AMJ96_CH01577	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMJ96_CH01580	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMJ96_CH01584	COG1940	carbohydrate kinase activity
AMJ96_CH01588	COG1175	transmembrane transport
AMJ96_CH01589	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH01592	COG0297	glycogen (starch) synthase activity
AMJ96_CH01597	COG1612	heme a metabolic process
AMJ96_CH01599	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMJ96_CH01600	COG0010	Belongs to the arginase family
AMJ96_CH01602	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMJ96_CH01603	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMJ96_CH01607	COG1832	CoA-binding protein
AMJ96_CH01616	COG3300	MHYT domain
AMJ96_CH01616	COG5001	Diguanylate cyclase
AMJ96_CH01618	COG3706	GGDEF domain
AMJ96_CH01619	COG0740	serine-type endopeptidase activity
AMJ96_CH01620	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMJ96_CH01621	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMJ96_CH01623	COG0776	regulation of translation
AMJ96_CH01625	COG0697	spore germination
AMJ96_CH01626	COG0667	Aldo Keto reductase
AMJ96_CH01630	COG0386	Belongs to the glutathione peroxidase family
AMJ96_CH01634	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH01635	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH01636	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH01637	COG0649	NAD binding
AMJ96_CH01639	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AMJ96_CH01640	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AMJ96_CH01641	COG3743	rRNA binding
AMJ96_CH01641	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMJ96_CH01643	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AMJ96_CH01644	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH01646	COG0713	ATP synthesis coupled electron transport
AMJ96_CH01649	COG1007	ATP synthesis coupled electron transport
AMJ96_CH01650	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AMJ96_CH01650	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AMJ96_CH01654	COG0442	prolyl-tRNA aminoacylation
AMJ96_CH01656	COG1136	(ABC) transporter
AMJ96_CH01658	COG0587	DNA-directed DNA polymerase activity
AMJ96_CH01660	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJ96_CH01664	COG0784	Response regulator, receiver
AMJ96_CH01665	COG3706	GGDEF domain
AMJ96_CH01665	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH01667	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMJ96_CH01668	COG0477	Major facilitator Superfamily
AMJ96_CH01670	COG0557	exoribonuclease II activity
AMJ96_CH01671	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMJ96_CH01672	COG0758	DNA mediated transformation
AMJ96_CH01673	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMJ96_CH01675	COG0540	Belongs to the ATCase OTCase family
AMJ96_CH01676	COG1960	acyl-CoA dehydrogenase activity
AMJ96_CH01677	COG1530	ribonuclease E activity
AMJ96_CH01678	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMJ96_CH01679	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMJ96_CH01683	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMJ96_CH01692	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJ96_CH01695	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH01700	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMJ96_CH01701	COG0081	regulation of translation
AMJ96_CH01703	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMJ96_CH01704	COG0222	ribosome binding
AMJ96_CH01706	COG0085	RNA polymerase activity
AMJ96_CH01707	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMJ96_CH01710	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMJ96_CH01711	COG0049	tRNA binding
AMJ96_CH01712	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMJ96_CH01713	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJ96_CH01714	COG0051	transcription antitermination factor activity, RNA binding
AMJ96_CH01715	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMJ96_CH01716	COG0088	Forms part of the polypeptide exit tunnel
AMJ96_CH01717	COG0089	rRNA binding
AMJ96_CH01718	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMJ96_CH01719	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMJ96_CH01720	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AMJ96_CH01721	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMJ96_CH01722	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMJ96_CH01723	COG0255	Belongs to the universal ribosomal protein uL29 family
AMJ96_CH01724	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMJ96_CH01725	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AMJ96_CH01726	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMJ96_CH01727	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMJ96_CH01728	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AMJ96_CH01729	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMJ96_CH01730	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMJ96_CH01731	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMJ96_CH01732	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AMJ96_CH01733	COG1841	ribosomal large subunit assembly
AMJ96_CH01734	COG0200	Binds to the 23S rRNA
AMJ96_CH01737	COG0563	adenylate kinase activity
AMJ96_CH01738	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AMJ96_CH01740	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AMJ96_CH01742	COG0202	RNA polymerase activity
AMJ96_CH01743	COG0203	ribosomal protein L17
AMJ96_CH01746	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMJ96_CH01747	COG0129	dihydroxy-acid dehydratase activity
AMJ96_CH01750	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJ96_CH01751	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMJ96_CH01754	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMJ96_CH01755	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01756	COG0583	DNA-binding transcription factor activity
AMJ96_CH01760	COG5002	protein histidine kinase activity
AMJ96_CH01761	COG1609	Transcriptional regulator
AMJ96_CH01763	COG1024	Enoyl-CoA hydratase
AMJ96_CH01765	COG1653	transport
AMJ96_CH01767	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH01768	COG3842	ATPase activity
AMJ96_CH01771	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH01772	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AMJ96_CH01778	COG2197	response regulator
AMJ96_CH01790	COG1522	sequence-specific DNA binding
AMJ96_CH01791	COG1522	sequence-specific DNA binding
AMJ96_CH01793	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AMJ96_CH01795	COG0625	glutathione transferase activity
AMJ96_CH01803	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJ96_CH01806	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
AMJ96_CH01808	COG1546	Belongs to the CinA family
AMJ96_CH01808	COG1058	Belongs to the CinA family
AMJ96_CH01811	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMJ96_CH01813	COG3706	GGDEF domain
AMJ96_CH01814	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH01816	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMJ96_CH01817	COG0583	DNA-binding transcription factor activity
AMJ96_CH01818	COG0737	Belongs to the 5'-nucleotidase family
AMJ96_CH01821	COG1522	sequence-specific DNA binding
AMJ96_CH01822	COG0686	Belongs to the AlaDH PNT family
AMJ96_CH01825	COG2897	thiosulfate sulfurtransferase activity
AMJ96_CH01827	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJ96_CH01828	COG3806	Anti-sigma factor
AMJ96_CH01829	COG0300	oxidoreductase activity
AMJ96_CH01831	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMJ96_CH01832	COG0243	molybdopterin cofactor binding
AMJ96_CH01834	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJ96_CH01836	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJ96_CH01837	COG3707	response regulator
AMJ96_CH01838	COG0450	alkyl hydroperoxide reductase
AMJ96_CH01849	COG3237	CsbD-like
AMJ96_CH01859	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMJ96_CH01861	COG0525	valine-tRNA ligase activity
AMJ96_CH01866	COG0316	Belongs to the HesB IscA family
AMJ96_CH01867	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AMJ96_CH01868	COG0018	arginyl-trna synthetase
AMJ96_CH01870	COG1472	Belongs to the glycosyl hydrolase 3 family
AMJ96_CH01871	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMJ96_CH01872	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMJ96_CH01873	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJ96_CH01874	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJ96_CH01875	COG0805	protein transport
AMJ96_CH01876	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMJ96_CH01877	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMJ96_CH01878	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMJ96_CH01883	COG0739	heme binding
AMJ96_CH01890	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
AMJ96_CH01899	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMJ96_CH01901	COG1032	radical SAM domain protein
AMJ96_CH01906	COG2003	Belongs to the UPF0758 family
AMJ96_CH01907	COG0024	Methionine aminopeptidase
AMJ96_CH01911	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMJ96_CH01912	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AMJ96_CH01913	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJ96_CH01914	COG0154	amidase activity
AMJ96_CH01920	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AMJ96_CH01923	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJ96_CH01927	COG4765	Protein conserved in bacteria
AMJ96_CH01929	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMJ96_CH01931	COG0511	ligase activity, forming carbon-carbon bonds
AMJ96_CH01932	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMJ96_CH01934	COG0436	Aminotransferase
AMJ96_CH01936	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJ96_CH01938	COG0436	Aminotransferase
AMJ96_CH01941	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMJ96_CH01946	COG0346	lactoylglutathione lyase activity
AMJ96_CH01947	COG1278	Cold shock
AMJ96_CH01958	COG1126	abc transporter atp-binding protein
AMJ96_CH01959	COG0765	amino acid transport
AMJ96_CH01960	COG4597	amino acid ABC transporter
AMJ96_CH01961	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH01962	COG0626	cystathionine gamma-synthase activity
AMJ96_CH01965	COG2267	carboxylic ester hydrolase activity
AMJ96_CH01969	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMJ96_CH01971	COG0537	adenosine 5'-monophosphoramidase activity
AMJ96_CH01981	COG0052	Belongs to the universal ribosomal protein uS2 family
AMJ96_CH01982	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMJ96_CH01983	COG0528	UMP kinase activity
AMJ96_CH01984	COG0233	cytoplasmic translational termination
AMJ96_CH01985	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMJ96_CH01987	COG0750	zinc metalloprotease
AMJ96_CH01989	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJ96_CH01990	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJ96_CH01991	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJ96_CH01992	COG3494	Protein of unknown function (DUF1009)
AMJ96_CH01993	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJ96_CH01996	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMJ96_CH01999	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMJ96_CH02000	COG0148	phosphopyruvate hydratase activity
AMJ96_CH02002	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMJ96_CH02003	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMJ96_CH02003	COG0022	dehydrogenase e1 component
AMJ96_CH02004	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMJ96_CH02007	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJ96_CH02010	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMJ96_CH02012	COG2867	negative regulation of translational initiation
AMJ96_CH02014	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMJ96_CH02014	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AMJ96_CH02017	COG2204	response regulator
AMJ96_CH02022	COG0583	DNA-binding transcription factor activity
AMJ96_CH02023	COG2814	Major facilitator Superfamily
AMJ96_CH02024	COG0583	DNA-binding transcription factor activity
AMJ96_CH02025	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AMJ96_CH02026	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH02027	COG4597	amino acid ABC transporter
AMJ96_CH02028	COG0765	amino acid transport
AMJ96_CH02029	COG1126	abc transporter atp-binding protein
AMJ96_CH02030	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMJ96_CH02031	COG0667	Aldo Keto reductase
AMJ96_CH02033	COG0559	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH02041	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02042	COG3836	Belongs to the HpcH HpaI aldolase family
AMJ96_CH02043	COG5000	phosphorelay sensor kinase activity
AMJ96_CH02044	COG2204	response regulator
AMJ96_CH02045	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMJ96_CH02046	COG1923	regulation of RNA biosynthetic process
AMJ96_CH02047	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMJ96_CH02048	COG3956	TIGRFAM MazG family protein
AMJ96_CH02050	COG1648	precorrin-2 dehydrogenase activity
AMJ96_CH02050	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMJ96_CH02054	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJ96_CH02055	COG0679	Auxin Efflux Carrier
AMJ96_CH02056	COG0785	Cytochrome C biogenesis protein
AMJ96_CH02073	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJ96_CH02078	COG5265	(ABC) transporter
AMJ96_CH02087	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02089	COG2207	Transcriptional regulator
AMJ96_CH02092	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMJ96_CH02094	COG0402	S-adenosylhomocysteine deaminase activity
AMJ96_CH02096	COG1116	anion transmembrane transporter activity
AMJ96_CH02104	COG1653	transport
AMJ96_CH02105	COG1175	transmembrane transport
AMJ96_CH02106	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH02107	COG3842	ATPase activity
AMJ96_CH02109	COG2186	Transcriptional regulator
AMJ96_CH02111	COG2113	Glycine betaine
AMJ96_CH02112	COG4176	ABC-type proline glycine betaine transport system permease component
AMJ96_CH02113	COG0517	IMP dehydrogenase activity
AMJ96_CH02113	COG4175	Glycine betaine
AMJ96_CH02114	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH02115	COG1312	Catalyzes the dehydration of D-mannonate
AMJ96_CH02116	COG2186	Transcriptional regulator
AMJ96_CH02117	COG0747	negative chemotaxis
AMJ96_CH02118	COG0601	transmembrane transport
AMJ96_CH02119	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_CH02120	COG0444	Belongs to the ABC transporter superfamily
AMJ96_CH02121	COG4608	Belongs to the ABC transporter superfamily
AMJ96_CH02122	COG0431	NADPH-dependent FMN reductase
AMJ96_CH02123	COG1609	Transcriptional regulator
AMJ96_CH02126	COG1175	transmembrane transport
AMJ96_CH02127	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH02133	COG0577	efflux transmembrane transporter activity
AMJ96_CH02133	COG1136	(ABC) transporter
AMJ96_CH02134	COG1136	(ABC) transporter
AMJ96_CH02134	COG0577	efflux transmembrane transporter activity
AMJ96_CH02138	COG1183	phosphatidylcholine synthase activity
AMJ96_CH02144	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_CH02145	COG1129	ABC transporter
AMJ96_CH02146	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH02147	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH02148	COG2186	Transcriptional regulator
AMJ96_CH02149	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMJ96_CH02150	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMJ96_CH02152	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMJ96_CH02154	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMJ96_CH02156	COG0237	dephospho-CoA kinase activity
AMJ96_CH02156	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AMJ96_CH02158	COG4166	transmembrane transport
AMJ96_CH02161	COG0174	glutamine synthetase
AMJ96_CH02162	COG0347	Belongs to the P(II) protein family
AMJ96_CH02163	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMJ96_CH02163	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMJ96_CH02165	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AMJ96_CH02166	COG0629	single-stranded DNA binding
AMJ96_CH02168	COG2095	MarC family integral membrane protein
AMJ96_CH02169	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AMJ96_CH02174	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMJ96_CH02175	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJ96_CH02176	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJ96_CH02177	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMJ96_CH02178	COG0343	queuine tRNA-ribosyltransferase activity
AMJ96_CH02180	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMJ96_CH02183	COG0483	inositol monophosphate 1-phosphatase activity
AMJ96_CH02184	COG3842	ATPase activity
AMJ96_CH02186	COG1840	ABC-type Fe3 transport system, periplasmic component
AMJ96_CH02187	COG1840	ABC-type Fe3 transport system, periplasmic component
AMJ96_CH02188	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH02189	COG4191	Histidine kinase
AMJ96_CH02189	COG0784	Response regulator, receiver
AMJ96_CH02200	COG1802	Transcriptional regulator
AMJ96_CH02203	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJ96_CH02207	COG2801	Transposase and inactivated derivatives
AMJ96_CH02209	COG0668	transmembrane transport
AMJ96_CH02212	COG0861	Integral membrane protein TerC family
AMJ96_CH02213	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMJ96_CH02213	COG0321	lipoyl(octanoyl) transferase activity
AMJ96_CH02214	COG0084	hydrolase, TatD family'
AMJ96_CH02215	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJ96_CH02216	COG0730	response to heat
AMJ96_CH02218	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMJ96_CH02224	COG2824	Alkylphosphonate utilization operon protein PhnA
AMJ96_CH02232	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMJ96_CH02233	COG0134	indole-3-glycerol-phosphate synthase activity
AMJ96_CH02234	COG0315	cyclic pyranopterin monophosphate synthase activity
AMJ96_CH02238	COG0513	Belongs to the DEAD box helicase family
AMJ96_CH02241	COG0372	Belongs to the citrate synthase family
AMJ96_CH02242	COG0372	Belongs to the citrate synthase family
AMJ96_CH02243	COG0504	CTP synthase activity
AMJ96_CH02245	COG0149	triose-phosphate isomerase activity
AMJ96_CH02247	COG0187	DNA topoisomerase II activity
AMJ96_CH02249	COG0628	permease
AMJ96_CH02256	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMJ96_CH02258	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMJ96_CH02259	COG0822	iron-sulfur transferase activity
AMJ96_CH02260	COG0302	gtp cyclohydrolase
AMJ96_CH02261	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMJ96_CH02262	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMJ96_CH02267	COG2267	carboxylic ester hydrolase activity
AMJ96_CH02270	COG1686	Belongs to the peptidase S11 family
AMJ96_CH02273	COG1760	l-serine dehydratase
AMJ96_CH02277	COG2239	Acts as a magnesium transporter
AMJ96_CH02278	COG0242	peptide deformylase activity
AMJ96_CH02283	COG0321	lipoyl(octanoyl) transferase activity
AMJ96_CH02287	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AMJ96_CH02288	COG2153	protein acetylation
AMJ96_CH02289	COG1671	Belongs to the UPF0178 family
AMJ96_CH02290	COG2076	Multidrug Resistance protein
AMJ96_CH02291	COG2259	Doxx family
AMJ96_CH02292	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMJ96_CH02295	COG0546	phosphoglycolate phosphatase activity
AMJ96_CH02297	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMJ96_CH02302	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJ96_CH02303	COG0509	glycine decarboxylation via glycine cleavage system
AMJ96_CH02304	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJ96_CH02304	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJ96_CH02308	COG0316	Belongs to the HesB IscA family
AMJ96_CH02309	COG2151	metal-sulfur cluster biosynthetic enzyme
AMJ96_CH02310	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMJ96_CH02311	COG0719	Fe-S assembly protein
AMJ96_CH02312	COG0396	ATPase activity
AMJ96_CH02314	COG0719	Fe-S assembly protein
AMJ96_CH02316	COG2945	thiolester hydrolase activity
AMJ96_CH02318	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMJ96_CH02319	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMJ96_CH02323	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMJ96_CH02324	COG2833	Protein of unknown function (DUF455)
AMJ96_CH02325	COG0741	lytic transglycosylase activity
AMJ96_CH02325	COG0739	heme binding
AMJ96_CH02325	COG1196	nuclear chromosome segregation
AMJ96_CH02326	COG0513	Belongs to the DEAD box helicase family
AMJ96_CH02329	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJ96_CH02334	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AMJ96_CH02340	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMJ96_CH02341	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMJ96_CH02342	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
AMJ96_CH02343	COG0047	phosphoribosylformylglycinamidine synthase activity
AMJ96_CH02346	COG2186	Transcriptional regulator
AMJ96_CH02348	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMJ96_CH02350	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH02351	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMJ96_CH02353	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMJ96_CH02354	COG1126	abc transporter atp-binding protein
AMJ96_CH02355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH02356	COG0765	amino acid transport
AMJ96_CH02360	COG3485	protocatechuate 3,4-dioxygenase
AMJ96_CH02361	COG3971	2-oxopent-4-enoate hydratase activity
AMJ96_CH02367	COG2814	Major facilitator Superfamily
AMJ96_CH02368	COG2814	Major facilitator Superfamily
AMJ96_CH02370	COG0483	inositol monophosphate 1-phosphatase activity
AMJ96_CH02371	COG0483	inositol monophosphate 1-phosphatase activity
AMJ96_CH02372	COG0037	tRNA processing
AMJ96_CH02373	COG2066	Belongs to the glutaminase family
AMJ96_CH02374	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AMJ96_CH02377	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AMJ96_CH02378	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AMJ96_CH02381	COG0538	isocitrate dehydrogenase activity
AMJ96_CH02386	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMJ96_CH02387	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMJ96_CH02389	COG2313	pseudouridylate synthase activity
AMJ96_CH02393	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMJ96_CH02395	COG3106	COG3106 Predicted ATPase
AMJ96_CH02396	COG3768	UPF0283 membrane protein
AMJ96_CH02398	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMJ96_CH02403	COG0633	Ferredoxin
AMJ96_CH02408	COG1686	Belongs to the peptidase S11 family
AMJ96_CH02411	COG1127	ABC transporter
AMJ96_CH02413	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_CH02414	COG2814	Major facilitator Superfamily
AMJ96_CH02419	COG0280	phosphate acetyltransferase
AMJ96_CH02419	COG0281	malic enzyme
AMJ96_CH02422	COG4941	Belongs to the sigma-70 factor family
AMJ96_CH02423	COG3795	YCII-related domain
AMJ96_CH02425	COG0778	Nitroreductase
AMJ96_CH02428	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMJ96_CH02429	COG0823	Involved in the tonB-independent uptake of proteins
AMJ96_CH02433	COG1132	(ABC) transporter
AMJ96_CH02434	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMJ96_CH02438	COG1254	Belongs to the acylphosphatase family
AMJ96_CH02440	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMJ96_CH02441	COG0546	phosphoglycolate phosphatase activity
AMJ96_CH02442	COG2989	Protein conserved in bacteria
AMJ96_CH02443	COG0114	fumarate hydratase activity
AMJ96_CH02445	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJ96_CH02445	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJ96_CH02446	COG3706	GGDEF domain
AMJ96_CH02449	COG1846	Transcriptional regulator
AMJ96_CH02452	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJ96_CH02453	COG2226	methyltransferase
AMJ96_CH02455	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMJ96_CH02456	COG1120	ATPase activity
AMJ96_CH02457	COG2390	Transcriptional regulator
AMJ96_CH02458	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMJ96_CH02459	COG3958	Transketolase
AMJ96_CH02460	COG3959	Transketolase, thiamine diphosphate binding domain
AMJ96_CH02461	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH02462	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_CH02463	COG1129	ABC transporter
AMJ96_CH02464	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02465	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02466	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02468	COG0746	molybdenum cofactor guanylyltransferase activity
AMJ96_CH02469	COG1763	Mo-molybdopterin cofactor biosynthetic process
AMJ96_CH02472	COG0667	Aldo Keto reductase
AMJ96_CH02474	COG1764	response to oxidative stress
AMJ96_CH02475	COG2205	protein histidine kinase activity
AMJ96_CH02476	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH02481	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH02482	COG4215	(ABC) transporter
AMJ96_CH02484	COG5425	PFAM Usg family protein
AMJ96_CH02497	COG2084	Dehydrogenase
AMJ96_CH02500	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AMJ96_CH02502	COG0583	DNA-binding transcription factor activity
AMJ96_CH02504	COG1522	sequence-specific DNA binding
AMJ96_CH02505	COG1573	uracil-dna glycosylase
AMJ96_CH02507	COG2202	Pas domain
AMJ96_CH02507	COG2205	protein histidine kinase activity
AMJ96_CH02509	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMJ96_CH02510	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
AMJ96_CH02512	COG2814	Major facilitator Superfamily
AMJ96_CH02515	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02516	COG0842	Transport permease protein
AMJ96_CH02517	COG1131	(ABC) transporter
AMJ96_CH02519	COG3507	Belongs to the glycosyl hydrolase 43 family
AMJ96_CH02520	COG0667	Aldo Keto reductase
AMJ96_CH02525	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH02534	COG0277	FAD linked oxidase domain protein
AMJ96_CH02535	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AMJ96_CH02542	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMJ96_CH02544	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJ96_CH02545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMJ96_CH02553	COG1957	nucleoside hydrolase
AMJ96_CH02562	COG1492	cobalamin metabolic process
AMJ96_CH02566	COG0583	DNA-binding transcription factor activity
AMJ96_CH02568	COG0583	DNA-binding transcription factor activity
AMJ96_CH02570	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMJ96_CH02571	COG1285	pathogenesis
AMJ96_CH02575	COG1566	PFAM secretion protein HlyD family protein
AMJ96_CH02578	COG0668	transmembrane transport
AMJ96_CH02583	COG2376	Dihydroxyacetone kinase
AMJ96_CH02587	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
AMJ96_CH02588	COG1461	Dihydroxyacetone kinase
AMJ96_CH02590	COG3842	ATPase activity
AMJ96_CH02593	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH02596	COG2814	Major facilitator Superfamily
AMJ96_CH02597	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH02599	COG3264	Mechanosensitive ion channel
AMJ96_CH02599	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
AMJ96_CH02602	COG0431	NADPH-dependent FMN reductase
AMJ96_CH02603	COG1393	Belongs to the ArsC family
AMJ96_CH02604	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMJ96_CH02606	COG0640	Transcriptional regulator
AMJ96_CH02609	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH02609	COG3706	GGDEF domain
AMJ96_CH02613	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJ96_CH02625	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AMJ96_CH02628	COG5001	Diguanylate cyclase
AMJ96_CH02628	COG3300	MHYT domain
AMJ96_CH02630	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH02631	COG3387	PFAM Glycoside hydrolase 15-related
AMJ96_CH02632	COG4251	negative regulation of phosphorylation
AMJ96_CH02632	COG5001	Diguanylate cyclase
AMJ96_CH02632	COG2203	Gaf domain
AMJ96_CH02632	COG3706	GGDEF domain
AMJ96_CH02637	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AMJ96_CH02637	COG1672	PFAM Archaeal ATPase
AMJ96_CH02656	COG1914	H( )-stimulated, divalent metal cation uptake system
AMJ96_CH02658	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJ96_CH02660	COG2852	Protein conserved in bacteria
AMJ96_CH02665	COG4372	Transposase
AMJ96_CH02666	COG3436	PFAM IS66 Orf2 family protein
AMJ96_CH02667	COG2963	transposase activity
AMJ96_CH02670	COG0596	Alpha beta hydrolase
AMJ96_CH02671	COG4191	Histidine kinase
AMJ96_CH02672	COG4566	intracellular signal transduction
AMJ96_CH02677	COG2801	Transposase and inactivated derivatives
AMJ96_CH02692	COG1846	Transcriptional regulator
AMJ96_CH02693	COG0494	nUDIX hydrolase
AMJ96_CH02695	COG1764	response to oxidative stress
AMJ96_CH02701	COG0840	transmembrane signaling receptor activity
AMJ96_CH02701	COG0840	transmembrane signaling receptor activity
AMJ96_CH02702	COG1607	acyl-coa hydrolase
AMJ96_CH02707	COG0702	epimerase
AMJ96_CH02710	COG0784	Response regulator, receiver
AMJ96_CH02711	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH02715	COG3152	Membrane
AMJ96_CH02718	COG0556	nucleotide-excision repair
AMJ96_CH02721	COG2135	peptidase activity
AMJ96_CH02722	COG0456	acetyltransferase
AMJ96_CH02725	COG1278	Cold shock
AMJ96_CH02726	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMJ96_CH02727	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJ96_CH02733	COG5002	protein histidine kinase activity
AMJ96_CH02734	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH02744	COG2354	Protein conserved in bacteria
AMJ96_CH02746	COG0702	epimerase
AMJ96_CH02747	COG0137	argininosuccinate synthase activity
AMJ96_CH02754	COG0456	acetyltransferase
AMJ96_CH02757	COG1917	Cupin 2, conserved barrel domain protein
AMJ96_CH02757	COG2207	Transcriptional regulator
AMJ96_CH02763	COG3158	transport of potassium into the cell
AMJ96_CH02769	COG1136	(ABC) transporter
AMJ96_CH02771	COG1917	Cupin 2, conserved barrel domain protein
AMJ96_CH02771	COG2207	Transcriptional regulator
AMJ96_CH02774	COG1845	cytochrome c oxidase, subunit III
AMJ96_CH02775	COG1845	cytochrome c oxidase, subunit III
AMJ96_CH02776	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJ96_CH02777	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJ96_CH02781	COG3453	Protein conserved in bacteria
AMJ96_CH02781	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_CH02786	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AMJ96_CH02806	COG5001	Diguanylate cyclase
AMJ96_CH02806	COG3300	MHYT domain
AMJ96_CH02809	COG2208	phosphoserine phosphatase activity
AMJ96_CH02817	COG1063	alcohol dehydrogenase
AMJ96_CH02821	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH02824	COG1846	Transcriptional regulator
AMJ96_CH02824	COG1940	carbohydrate kinase activity
AMJ96_CH02828	COG0697	spore germination
AMJ96_CH02829	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJ96_CH02830	COG2204	response regulator
AMJ96_CH02831	COG4191	Histidine kinase
AMJ96_CH02839	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_CH02843	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AMJ96_CH02870	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMJ96_CH02871	COG1121	(ABC) transporter
AMJ96_CH02872	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AMJ96_CH02877	COG1253	flavin adenine dinucleotide binding
AMJ96_CH02883	COG0384	phenazine biosynthesis protein PhzF
AMJ96_CH02888	COG1177	transmembrane transport
AMJ96_CH02891	COG1846	Transcriptional regulator
AMJ96_CH02892	COG0667	Aldo Keto reductase
AMJ96_CH02893	COG5634	Uncharacterized conserved protein (DUF2278)
AMJ96_CH02894	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJ96_CH02895	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMJ96_CH02904	COG1260	myo-inositol-1-phosphate synthase
AMJ96_CH02908	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMJ96_CH02911	COG1069	ribulokinase activity
AMJ96_CH02912	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMJ96_CH02915	COG1175	transmembrane transport
AMJ96_CH02917	COG3842	ATPase activity
AMJ96_CH02920	COG0463	Glycosyl transferase, family 2
AMJ96_CH02921	COG2207	Transcriptional regulator
AMJ96_CH02922	COG1064	alcohol dehydrogenase
AMJ96_CH02926	COG1522	sequence-specific DNA binding
AMJ96_CH02927	COG1794	racemase activity, acting on amino acids and derivatives
AMJ96_CH02928	COG0456	acetyltransferase
AMJ96_CH02928	COG1846	Transcriptional regulator
AMJ96_CH02929	COG1309	transcriptional regulator
AMJ96_CH02930	COG2814	Major facilitator Superfamily
AMJ96_CH02931	COG1733	regulation of RNA biosynthetic process
AMJ96_CH02933	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMJ96_CH02935	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMJ96_CH02940	COG0668	transmembrane transport
AMJ96_CH02951	COG0656	L-ascorbic acid biosynthetic process
AMJ96_CH02952	COG0440	acetolactate synthase activity
AMJ96_CH02953	COG0028	Belongs to the TPP enzyme family
AMJ96_CH02956	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH02959	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMJ96_CH02960	COG3830	Belongs to the UPF0237 family
AMJ96_CH02960	COG0560	Phosphoserine phosphatase
AMJ96_CH02961	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJ96_CH02962	COG0330	HflC and HflK could
AMJ96_CH02963	COG0330	HflC and HflK could
AMJ96_CH02965	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMJ96_CH02971	COG0277	FAD linked oxidase domain protein
AMJ96_CH02972	COG0667	Aldo Keto reductase
AMJ96_CH02974	COG3180	Ammonia monooxygenase
AMJ96_CH02977	COG2885	chlorophyll binding
AMJ96_CH02978	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMJ96_CH02979	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMJ96_CH02982	COG2719	SpoVR family
AMJ96_CH02983	COG2718	Belongs to the UPF0229 family
AMJ96_CH02984	COG2766	serine protein kinase
AMJ96_CH02988	COG1335	isochorismatase
AMJ96_CH02993	COG0006	proline dipeptidase activity
AMJ96_CH02995	COG2264	protein methyltransferase activity
AMJ96_CH02996	COG1999	signal sequence binding
AMJ96_CH02997	COG0840	transmembrane signaling receptor activity
AMJ96_CH02997	COG2972	Histidine kinase
AMJ96_CH02998	COG0835	chemotaxis
AMJ96_CH03002	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMJ96_CH03005	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMJ96_CH03008	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AMJ96_CH03009	COG0849	cell division
AMJ96_CH03010	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMJ96_CH03011	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMJ96_CH03013	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMJ96_CH03014	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMJ96_CH03015	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMJ96_CH03017	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMJ96_CH03018	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMJ96_CH03020	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMJ96_CH03023	COG0275	rRNA processing
AMJ96_CH03024	COG2001	Belongs to the MraZ family
AMJ96_CH03029	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMJ96_CH03030	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMJ96_CH03032	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH03037	COG3757	hydrolase, family 25
AMJ96_CH03041	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMJ96_CH03046	COG2267	carboxylic ester hydrolase activity
AMJ96_CH03047	COG0697	spore germination
AMJ96_CH03048	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMJ96_CH03049	COG0028	Belongs to the TPP enzyme family
AMJ96_CH03050	COG0251	oxidation-reduction process
AMJ96_CH03053	COG1376	ErfK ybiS ycfS ynhG family protein
AMJ96_CH03054	COG1192	Involved in chromosome partitioning
AMJ96_CH03057	COG0174	glutamine synthetase
AMJ96_CH03063	COG2011	ABC-type metal ion transport system permease component
AMJ96_CH03064	COG3842	ATPase activity
AMJ96_CH03066	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH03067	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH03070	COG2971	BadF BadG BcrA BcrD
AMJ96_CH03076	COG4702	Belongs to the UPF0303 family
AMJ96_CH03077	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJ96_CH03079	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH03080	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_CH03082	COG3842	ATPase activity
AMJ96_CH03100	COG2968	Membrane
AMJ96_CH03103	COG0432	Pfam Uncharacterised protein family UPF0047
AMJ96_CH03109	COG2207	Transcriptional regulator
AMJ96_CH03109	COG1917	Cupin 2, conserved barrel domain protein
AMJ96_CH03114	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMJ96_CH03116	COG1063	alcohol dehydrogenase
AMJ96_CH03117	COG0156	8-amino-7-oxononanoate synthase activity
AMJ96_CH03119	COG0358	DNA primase activity
AMJ96_CH03122	COG0505	Belongs to the CarA family
AMJ96_CH03125	COG0534	Mate efflux family protein
AMJ96_CH03127	COG0667	Aldo Keto reductase
AMJ96_CH03128	COG2321	neutral zinc metallopeptidase
AMJ96_CH03130	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMJ96_CH03133	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMJ96_CH03135	COG1301	dicarboxylic acid transport
AMJ96_CH03136	COG4191	Histidine kinase
AMJ96_CH03137	COG2204	response regulator
AMJ96_CH03138	COG1522	sequence-specific DNA binding
AMJ96_CH03139	COG0492	ferredoxin-NADP+ reductase activity
AMJ96_CH03140	COG0583	DNA-binding transcription factor activity
AMJ96_CH03144	COG2814	Major facilitator Superfamily
AMJ96_CH03145	COG1902	pentaerythritol trinitrate reductase activity
AMJ96_CH03148	COG0583	DNA-binding transcription factor activity
AMJ96_CH03149	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AMJ96_CH03149	COG0456	acetyltransferase
AMJ96_CH03151	COG0387	Pfam Sodium calcium exchanger
AMJ96_CH03154	COG1442	glycosyl transferase family 8
AMJ96_CH03160	COG2133	pyrroloquinoline quinone binding
AMJ96_CH03163	COG1278	Cold shock
AMJ96_CH03165	COG2205	protein histidine kinase activity
AMJ96_CH03166	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH03167	COG1846	Transcriptional regulator
AMJ96_CH03171	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_CH03172	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJ96_CH03177	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMJ96_CH03182	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMJ96_CH03184	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMJ96_CH03185	COG5001	Diguanylate cyclase
AMJ96_CH03185	COG3300	MHYT domain
AMJ96_CH03187	COG0193	aminoacyl-tRNA hydrolase activity
AMJ96_CH03189	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMJ96_CH03194	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMJ96_CH03195	COG2857	Cytochrome c1
AMJ96_CH03195	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMJ96_CH03199	COG1132	(ABC) transporter
AMJ96_CH03201	COG1132	(ABC) transporter
AMJ96_CH03202	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMJ96_CH03203	COG1283	sodium-dependent phosphate transmembrane transporter activity
AMJ96_CH03205	COG0408	coproporphyrinogen oxidase activity
AMJ96_CH03208	COG0617	tRNA 3'-terminal CCA addition
AMJ96_CH03211	COG0714	Associated with various cellular activities
AMJ96_CH03215	COG0454	-acetyltransferase
AMJ96_CH03217	COG0435	Glutathione S-transferase
AMJ96_CH03223	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJ96_CH03224	COG3135	benzoate transporter
AMJ96_CH03225	COG0740	serine-type endopeptidase activity
AMJ96_CH03226	COG3416	Protein conserved in bacteria
AMJ96_CH03227	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMJ96_CH03228	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AMJ96_CH03231	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMJ96_CH03231	COG0512	Glutamine amidotransferase of anthranilate synthase
AMJ96_CH03235	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AMJ96_CH03237	COG2197	response regulator
AMJ96_CH03241	COG1435	thymidine kinase activity
AMJ96_CH03244	COG4175	Glycine betaine
AMJ96_CH03251	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AMJ96_CH03252	COG0366	Alpha amylase catalytic
AMJ96_CH03254	COG0601	transmembrane transport
AMJ96_CH03255	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_CH03257	COG4608	Belongs to the ABC transporter superfamily
AMJ96_CH03259	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_CH03263	COG1160	GTP binding
AMJ96_CH03267	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AMJ96_CH03270	COG0024	Methionine aminopeptidase
AMJ96_CH03273	COG4941	Belongs to the sigma-70 factor family
AMJ96_CH03274	COG3795	YCII-related domain
AMJ96_CH03275	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMJ96_CH03276	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03278	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMJ96_CH03281	COG0583	DNA-binding transcription factor activity
AMJ96_CH03284	COG0402	S-adenosylhomocysteine deaminase activity
AMJ96_CH03285	COG1304	FMN binding
AMJ96_CH03287	COG2453	phosphatase
AMJ96_CH03287	COG0671	phosphoesterase, PA-phosphatase related
AMJ96_CH03288	COG2267	carboxylic ester hydrolase activity
AMJ96_CH03289	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMJ96_CH03290	COG1842	Phage shock protein A
AMJ96_CH03292	COG2268	Band 7 protein
AMJ96_CH03294	COG2351	hydroxyisourate hydrolase activity
AMJ96_CH03295	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
AMJ96_CH03301	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH03301	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AMJ96_CH03302	COG2205	protein histidine kinase activity
AMJ96_CH03302	COG0784	Response regulator, receiver
AMJ96_CH03302	COG5002	protein histidine kinase activity
AMJ96_CH03304	COG0477	Major facilitator Superfamily
AMJ96_CH03305	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH03306	COG1609	Transcriptional regulator
AMJ96_CH03307	COG4335	DNA alkylation repair
AMJ96_CH03308	COG0513	Belongs to the DEAD box helicase family
AMJ96_CH03312	COG2308	Evidence 4 Homologs of previously reported genes of
AMJ96_CH03318	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH03320	COG4214	carbohydrate transport
AMJ96_CH03328	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH03330	COG4213	ABC transporter substrate-binding protein
AMJ96_CH03331	COG4214	carbohydrate transport
AMJ96_CH03332	COG1129	ABC transporter
AMJ96_CH03340	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMJ96_CH03341	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMJ96_CH03350	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJ96_CH03353	COG2856	Zn peptidase
AMJ96_CH03375	COG1574	metal-dependent hydrolase with the TIM-barrel fold
AMJ96_CH03379	COG0346	lactoylglutathione lyase activity
AMJ96_CH03380	COG0583	DNA-binding transcription factor activity
AMJ96_CH03382	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJ96_CH03383	COG2755	lipolytic protein G-D-S-L family
AMJ96_CH03383	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJ96_CH03385	COG0723	plastoquinol--plastocyanin reductase activity
AMJ96_CH03386	COG3108	Peptidase M15
AMJ96_CH03392	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH03393	COG1129	ABC transporter
AMJ96_CH03398	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH03400	COG1215	transferase activity, transferring glycosyl groups
AMJ96_CH03401	COG1216	Glycosyl transferase, family 2
AMJ96_CH03403	COG1442	glycosyl transferase family 8
AMJ96_CH03403	COG1216	Glycosyl transferase, family 2
AMJ96_CH03410	COG1396	sequence-specific DNA binding
AMJ96_CH03421	COG0463	Glycosyl transferase, family 2
AMJ96_CH03422	COG1215	transferase activity, transferring glycosyl groups
AMJ96_CH03425	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJ96_CH03429	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJ96_CH03430	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
AMJ96_CH03434	COG0489	protein tyrosine kinase activity
AMJ96_CH03434	COG3206	protein involved in exopolysaccharide biosynthesis
AMJ96_CH03439	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AMJ96_CH03440	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJ96_CH03442	COG0400	carboxylic ester hydrolase activity
AMJ96_CH03443	COG0346	lactoylglutathione lyase activity
AMJ96_CH03444	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMJ96_CH03445	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJ96_CH03446	COG0662	Cupin 2, conserved barrel domain protein
AMJ96_CH03446	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
AMJ96_CH03449	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_CH03451	COG1309	transcriptional regulator
AMJ96_CH03452	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJ96_CH03453	COG1131	(ABC) transporter
AMJ96_CH03454	COG0842	Transport permease protein
AMJ96_CH03455	COG0842	Transport permease protein
AMJ96_CH03459	COG2076	Multidrug Resistance protein
AMJ96_CH03461	COG2346	COG2346, Truncated hemoglobins
AMJ96_CH03466	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
AMJ96_CH03472	COG0784	Response regulator, receiver
AMJ96_CH03477	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMJ96_CH03479	COG0366	Alpha amylase catalytic
AMJ96_CH03480	COG4977	sequence-specific DNA binding
AMJ96_CH03487	COG1196	nuclear chromosome segregation
AMJ96_CH03492	COG1431	PFAM Stem cell self-renewal protein Piwi
AMJ96_CH03502	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJ96_CH03504	COG1309	transcriptional regulator
AMJ96_CH03506	COG2852	Protein conserved in bacteria
AMJ96_CH03510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_CH03511	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_CH03512	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJ96_CH03515	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AMJ96_CH03516	COG0830	nickel cation binding
AMJ96_CH03517	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
AMJ96_CH03518	COG3706	GGDEF domain
AMJ96_CH03520	COG0804	urea catabolic process
AMJ96_CH03521	COG1442	glycosyl transferase family 8
AMJ96_CH03522	COG3755	Protein conserved in bacteria
AMJ96_CH03523	COG0832	Belongs to the urease beta subunit family
AMJ96_CH03524	COG3813	Protein conserved in bacteria
AMJ96_CH03526	COG0829	nickel cation binding
AMJ96_CH03534	COG2205	protein histidine kinase activity
AMJ96_CH03534	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH03536	COG0683	leucine binding
AMJ96_CH03539	COG0411	ABC transporter
AMJ96_CH03541	COG0559	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH03556	COG0564	pseudouridine synthase activity
AMJ96_CH03557	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMJ96_CH03559	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AMJ96_CH03562	COG0129	dihydroxy-acid dehydratase activity
AMJ96_CH03567	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03570	COG2094	Belongs to the DNA glycosylase MPG family
AMJ96_CH03575	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJ96_CH03577	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJ96_CH03579	COG1959	2 iron, 2 sulfur cluster binding
AMJ96_CH03580	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03584	COG3842	ATPase activity
AMJ96_CH03585	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH03586	COG1175	transmembrane transport
AMJ96_CH03587	COG1653	transport
AMJ96_CH03589	COG1940	carbohydrate kinase activity
AMJ96_CH03589	COG1846	Transcriptional regulator
AMJ96_CH03591	COG1653	transport
AMJ96_CH03598	COG2244	polysaccharide biosynthetic process
AMJ96_CH03599	COG0438	transferase activity, transferring glycosyl groups
AMJ96_CH03603	COG0489	protein tyrosine kinase activity
AMJ96_CH03605	COG1596	polysaccharide export
AMJ96_CH03613	COG2132	Multicopper oxidase
AMJ96_CH03616	COG0713	ATP synthesis coupled electron transport
AMJ96_CH03617	COG0651	ATP synthesis coupled electron transport
AMJ96_CH03623	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH03624	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH03625	COG0649	NAD binding
AMJ96_CH03630	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMJ96_CH03631	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AMJ96_CH03641	COG1187	pseudouridine synthase activity
AMJ96_CH03643	COG3273	potassium ion transport
AMJ96_CH03643	COG0471	metal ion transport
AMJ96_CH03644	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMJ96_CH03645	COG1309	transcriptional regulator
AMJ96_CH03647	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMJ96_CH03651	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_CH03652	COG1177	transmembrane transport
AMJ96_CH03655	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AMJ96_CH03659	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03660	COG0277	FAD linked oxidase domain protein
AMJ96_CH03662	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMJ96_CH03663	COG1473	amidohydrolase
AMJ96_CH03669	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMJ96_CH03676	COG3300	MHYT domain
AMJ96_CH03676	COG5001	Diguanylate cyclase
AMJ96_CH03677	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AMJ96_CH03678	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
AMJ96_CH03681	COG0683	leucine binding
AMJ96_CH03689	COG0482	sulfurtransferase activity
AMJ96_CH03692	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMJ96_CH03695	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AMJ96_CH03696	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJ96_CH03697	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJ96_CH03698	COG0037	tRNA processing
AMJ96_CH03700	COG2885	chlorophyll binding
AMJ96_CH03701	COG0823	Involved in the tonB-independent uptake of proteins
AMJ96_CH03703	COG0848	biopolymer transport protein
AMJ96_CH03705	COG0824	Thioesterase
AMJ96_CH03710	COG1692	metallophosphoesterase
AMJ96_CH03713	COG0217	transcriptional regulatory protein
AMJ96_CH03714	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_CH03715	COG0840	transmembrane signaling receptor activity
AMJ96_CH03716	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMJ96_CH03719	COG0632	four-way junction helicase activity
AMJ96_CH03720	COG2255	four-way junction helicase activity
AMJ96_CH03721	COG1408	metallophosphoesterase
AMJ96_CH03722	COG0494	nUDIX hydrolase
AMJ96_CH03723	COG2318	DinB family
AMJ96_CH03725	COG0392	lysyltransferase activity
AMJ96_CH03725	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AMJ96_CH03727	COG0668	transmembrane transport
AMJ96_CH03728	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
AMJ96_CH03742	COG0126	phosphoglycerate kinase activity
AMJ96_CH03743	COG3588	fructose-bisphosphate aldolase
AMJ96_CH03744	COG0384	phenazine biosynthesis protein PhzF
AMJ96_CH03750	COG0254	rRNA binding
AMJ96_CH03752	COG1132	(ABC) transporter
AMJ96_CH03754	COG3422	double-strand break repair
AMJ96_CH03759	COG0483	inositol monophosphate 1-phosphatase activity
AMJ96_CH03760	COG2201	protein-glutamate methylesterase activity
AMJ96_CH03764	COG0840	transmembrane signaling receptor activity
AMJ96_CH03765	COG0835	chemotaxis
AMJ96_CH03766	COG0643	Histidine kinase
AMJ96_CH03766	COG2198	Histidine kinase
AMJ96_CH03773	COG0640	Transcriptional regulator
AMJ96_CH03776	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMJ96_CH03777	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AMJ96_CH03778	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AMJ96_CH03779	COG0457	Tetratricopeptide repeat
AMJ96_CH03783	COG0583	DNA-binding transcription factor activity
AMJ96_CH03784	COG1942	4-Oxalocrotonate Tautomerase
AMJ96_CH03786	COG1280	lysine exporter protein (LysE YggA)
AMJ96_CH03787	COG0469	pyruvate kinase activity
AMJ96_CH03791	COG3750	Belongs to the UPF0335 family
AMJ96_CH03792	COG3108	Peptidase M15
AMJ96_CH03793	COG2204	response regulator
AMJ96_CH03798	COG5310	Homospermidine synthase
AMJ96_CH03800	COG0737	Belongs to the 5'-nucleotidase family
AMJ96_CH03801	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMJ96_CH03802	COG0330	HflC and HflK could
AMJ96_CH03806	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMJ96_CH03807	COG2951	lytic endotransglycosylase activity
AMJ96_CH03811	COG0067	glutamate synthase
AMJ96_CH03811	COG0069	glutamate synthase activity
AMJ96_CH03811	COG0070	glutamate synthase
AMJ96_CH03815	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJ96_CH03835	COG0642	Histidine kinase
AMJ96_CH03837	COG2308	Evidence 4 Homologs of previously reported genes of
AMJ96_CH03837	COG2307	Protein conserved in bacteria
AMJ96_CH03840	COG0058	SHG alpha-glucan phosphorylase activity
AMJ96_CH03841	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMJ96_CH03842	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AMJ96_CH03843	COG0297	glycogen (starch) synthase activity
AMJ96_CH03844	COG0033	Phosphoglucomutase
AMJ96_CH03849	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJ96_CH03849	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJ96_CH03851	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH03855	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMJ96_CH03857	COG2202	Pas domain
AMJ96_CH03857	COG3920	Histidine kinase
AMJ96_CH03859	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMJ96_CH03860	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMJ96_CH03861	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMJ96_CH03864	COG5001	Diguanylate cyclase
AMJ96_CH03868	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJ96_CH03869	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMJ96_CH03870	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJ96_CH03871	COG1609	Transcriptional regulator
AMJ96_CH03872	COG1846	Transcriptional regulator
AMJ96_CH03874	COG0523	cobalamin synthesis protein
AMJ96_CH03878	COG3706	GGDEF domain
AMJ96_CH03882	COG0583	DNA-binding transcription factor activity
AMJ96_CH03888	COG0800	Aldolase
AMJ96_CH03895	COG0673	inositol 2-dehydrogenase activity
AMJ96_CH03897	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_CH03898	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH03899	COG1129	ABC transporter
AMJ96_CH03900	COG1609	Transcriptional regulator
AMJ96_CH03901	COG2115	Belongs to the xylose isomerase family
AMJ96_CH03902	COG1070	Carbohydrate kinase
AMJ96_CH03903	COG1609	Transcriptional regulator
AMJ96_CH03908	COG1253	flavin adenine dinucleotide binding
AMJ96_CH03909	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJ96_CH03910	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMJ96_CH03912	COG0583	DNA-binding transcription factor activity
AMJ96_CH03913	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMJ96_CH03914	COG3842	ATPase activity
AMJ96_CH03915	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_CH03916	COG1177	transmembrane transport
AMJ96_CH03917	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH03922	COG1595	DNA-templated transcription, initiation
AMJ96_CH03925	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMJ96_CH03937	COG1175	transmembrane transport
AMJ96_CH03941	COG1940	carbohydrate kinase activity
AMJ96_CH03946	COG1764	response to oxidative stress
AMJ96_CH03947	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03950	COG1129	ABC transporter
AMJ96_CH03952	COG2186	Transcriptional regulator
AMJ96_CH03953	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_CH03955	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03957	COG1609	Transcriptional regulator
AMJ96_CH03959	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH03960	COG3386	PFAM SMP-30 Gluconolaconase
AMJ96_CH03962	COG3842	ATPase activity
AMJ96_CH03963	COG0395	ABC-type sugar transport system, permease component
AMJ96_CH03965	COG1653	transport
AMJ96_CH03966	COG1609	Transcriptional regulator
AMJ96_CH03967	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMJ96_CH03968	COG0720	synthase
AMJ96_CH03969	COG0602	queuosine metabolic process
AMJ96_CH03971	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJ96_CH03973	COG1780	Probably involved in ribonucleotide reductase function
AMJ96_CH03979	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH03981	COG0693	protein deglycase activity
AMJ96_CH03984	COG0387	Pfam Sodium calcium exchanger
AMJ96_CH03993	COG0542	response to heat
AMJ96_CH03996	COG2890	protein-(glutamine-N5) methyltransferase activity
AMJ96_CH03997	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMJ96_CH03999	COG0527	aspartate kinase activity
AMJ96_CH04000	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMJ96_CH04002	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMJ96_CH04005	COG2267	carboxylic ester hydrolase activity
AMJ96_CH04005	COG2226	methyltransferase
AMJ96_CH04008	COG0494	nUDIX hydrolase
AMJ96_CH04010	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AMJ96_CH04011	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJ96_CH04012	COG0653	protein targeting
AMJ96_CH04015	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJ96_CH04016	COG0667	Aldo Keto reductase
AMJ96_CH04022	COG4651	solute:proton antiporter activity
AMJ96_CH04022	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJ96_CH04028	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJ96_CH04030	COG0300	oxidoreductase activity
AMJ96_CH04034	COG2086	electron transfer activity
AMJ96_CH04037	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJ96_CH04038	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMJ96_CH04039	COG0165	Argininosuccinate lyase
AMJ96_CH04044	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AMJ96_CH04044	COG0037	tRNA processing
AMJ96_CH04046	COG2884	Cell division ATP-binding protein ftsE
AMJ96_CH04050	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AMJ96_CH04053	COG0287	Prephenate dehydrogenase
AMJ96_CH04054	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJ96_CH04055	COG2226	methyltransferase
AMJ96_CH04056	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_CH04060	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AMJ96_CH04062	COG0563	adenylate kinase activity
AMJ96_CH04068	COG4536	flavin adenine dinucleotide binding
AMJ96_CH04069	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMJ96_CH04070	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AMJ96_CH04072	COG4974	Belongs to the 'phage' integrase family
AMJ96_CH04073	COG0825	malonyl-CoA metabolic process
AMJ96_CH04074	COG3034	peptidoglycan biosynthetic process
AMJ96_CH04076	COG0523	cobalamin synthesis protein
AMJ96_CH04077	COG1686	Belongs to the peptidase S11 family
AMJ96_CH04078	COG1473	amidohydrolase
AMJ96_CH04086	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AMJ96_CH04090	COG1175	transmembrane transport
AMJ96_CH04093	COG0156	8-amino-7-oxononanoate synthase activity
AMJ96_CH04095	COG0729	surface antigen
AMJ96_CH04099	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJ96_CH04100	COG0835	chemotaxis
AMJ96_CH04103	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMJ96_CH04104	COG3383	formate dehydrogenase (NAD+) activity
AMJ96_CH04107	COG0583	DNA-binding transcription factor activity
AMJ96_CH04108	COG0640	Transcriptional regulator
AMJ96_CH04109	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH04110	COG0789	Transcriptional regulator
AMJ96_CH04112	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_CH04113	COG1116	anion transmembrane transporter activity
AMJ96_CH04114	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJ96_CH04117	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMJ96_CH04119	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMJ96_CH04120	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMJ96_CH04121	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMJ96_CH04122	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMJ96_CH04125	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_CH04128	COG4974	Belongs to the 'phage' integrase family
AMJ96_CH04130	COG3038	cytochrome b561
AMJ96_CH04133	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_CH04136	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMJ96_CH04139	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMJ96_CH04140	COG0045	succinate-CoA ligase (ADP-forming) activity
AMJ96_CH04141	COG0039	L-malate dehydrogenase activity
AMJ96_CH04142	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMJ96_CH04143	COG2845	Protein of unknown function (DUF459)
AMJ96_CH04151	COG2350	Protein conserved in bacteria
AMJ96_CH04152	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMJ96_CH04153	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMJ96_CH04154	COG0181	hydroxymethylbilane synthase activity
AMJ96_CH04159	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMJ96_CH04162	COG1872	DUF167
AMJ96_CH04163	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMJ96_CH04166	COG0339	signal peptide processing
AMJ96_CH04171	COG0137	argininosuccinate synthase activity
AMJ96_CH04174	COG0410	ABC transporter
AMJ96_CH04175	COG4120	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH04177	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMJ96_CH04179	COG1595	DNA-templated transcription, initiation
AMJ96_CH04181	COG2154	pterin-4-alpha-carbinolamine dehydratase
AMJ96_CH04182	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMJ96_CH04183	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
AMJ96_CH04185	COG4181	ATPase activity
AMJ96_CH04187	COG0670	Belongs to the BI1 family
AMJ96_CH04191	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMJ96_CH04193	COG4133	protoheme IX ABC transporter activity
AMJ96_CH04194	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMJ96_CH04195	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMJ96_CH04199	COG2917	probably involved in intracellular septation
AMJ96_CH04200	COG0552	protein localization to endoplasmic reticulum
AMJ96_CH04201	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMJ96_CH04202	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJ96_CH04204	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMJ96_CH04205	COG1605	Chorismate mutase
AMJ96_CH04205	COG0287	Prephenate dehydrogenase
AMJ96_CH04206	COG0228	four-way junction DNA binding
AMJ96_CH04207	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMJ96_CH04208	COG0336	Belongs to the RNA methyltransferase TrmD family
AMJ96_CH04209	COG0335	large ribosomal subunit rRNA binding
AMJ96_CH04211	COG0765	amino acid transport
AMJ96_CH04213	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMJ96_CH04214	COG0656	L-ascorbic acid biosynthetic process
AMJ96_CH04216	COG0745	RESPONSE REGULATOR receiver
AMJ96_CH04219	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMJ96_CH04220	COG1674	ftsk spoiiie
AMJ96_CH04221	COG0004	ammonium transporteR
AMJ96_CH04222	COG0347	Belongs to the P(II) protein family
AMJ96_CH04223	COG1946	Acyl-CoA thioesterase
AMJ96_CH04224	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJ96_CH04225	COG2835	tetraacyldisaccharide 4'-kinase activity
AMJ96_CH04236	COG1129	ABC transporter
AMJ96_CH04237	COG4211	Belongs to the binding-protein-dependent transport system permease family
AMJ96_CH04240	COG0601	transmembrane transport
AMJ96_CH04242	COG0444	Belongs to the ABC transporter superfamily
AMJ96_CH04243	COG4608	Belongs to the ABC transporter superfamily
AMJ96_CH04246	COG3459	Glycosyltransferase 36 associated
AMJ96_CH04249	COG1132	(ABC) transporter
AMJ96_CH04251	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
AMJ96_CH04253	COG1126	abc transporter atp-binding protein
AMJ96_CH04254	COG0765	amino acid transport
AMJ96_CH04255	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_CH04257	COG1349	DNA-binding transcription factor activity
AMJ96_CH04258	COG2223	nitrite transmembrane transporter activity
AMJ96_CH04259	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AMJ96_CH04260	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJ96_CH04261	COG0142	geranyltranstransferase activity
AMJ96_CH04262	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMJ96_CH04265	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMJ96_CH04267	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AMJ96_CH04268	COG0183	Belongs to the thiolase family
AMJ96_CH04276	COG1329	Transcriptional regulator
AMJ96_CH04277	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMJ96_CH04278	COG4783	chaperone-mediated protein folding
AMJ96_CH04279	COG2814	Major facilitator Superfamily
AMJ96_CH04283	COG4178	(ABC) transporter
AMJ96_CH04284	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
AMJ96_CH04286	COG2188	Transcriptional regulator
AMJ96_CH04287	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMJ96_CH04288	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMJ96_CH04289	COG4821	SIS domain
AMJ96_CH04291	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMJ96_CH04293	COG1509	lysine 2,3-aminomutase activity
AMJ96_CH04294	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMJ96_CH04296	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMJ96_CH04299	COG0438	transferase activity, transferring glycosyl groups
AMJ96_CH04304	COG5383	Protein conserved in bacteria
AMJ96_CH04305	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_CH04306	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_CH04309	COG3842	ATPase activity
AMJ96_CH04314	COG0477	Major facilitator Superfamily
AMJ96_CH04315	COG0583	DNA-binding transcription factor activity
AMJ96_CH04317	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMJ96_CH04318	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMJ96_CH04322	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMJ96_CH04323	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMJ96_CH04324	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMJ96_CH04325	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMJ96_CH04326	COG0725	ABC transporter, periplasmic molybdate-binding protein
AMJ96_CH04327	COG4149	molybdate abc transporter
AMJ96_CH04328	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMJ96_CH04330	COG0799	negative regulation of ribosome biogenesis
AMJ96_CH04331	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMJ96_CH04333	COG0793	Belongs to the peptidase S41A family
AMJ96_CH04335	COG0494	nUDIX hydrolase
AMJ96_CH04338	COG0587	DNA-directed DNA polymerase activity
AMJ96_CH04339	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJ96_CH04346	COG0066	3-isopropylmalate dehydratase activity
AMJ96_CH04348	COG0473	3-isopropylmalate dehydrogenase activity
AMJ96_CH04349	COG0671	phosphoesterase, PA-phosphatase related
AMJ96_CH04352	COG1136	(ABC) transporter
AMJ96_CH04354	COG1785	Belongs to the alkaline phosphatase family
AMJ96_CH04355	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMJ96_CH04358	COG0288	reversible hydration of carbon dioxide
AMJ96_CH04361	COG2902	Dehydrogenase
AMJ96_CH04362	COG2270	Major facilitator Superfamily
AMJ96_CH04363	COG0138	bifunctional purine biosynthesis protein purh
AMJ96_CH04365	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMJ96_CH04365	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMJ96_CH04366	COG0501	Belongs to the peptidase M48B family
AMJ96_CH04368	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJ96_CH04372	COG0495	leucyl-tRNA aminoacylation
AMJ96_CH04375	COG1475	DNA binding
AMJ96_CH04376	COG1192	Involved in chromosome partitioning
AMJ96_CH04377	COG0357	Ribosomal RNA small subunit methyltransferase G
AMJ96_CH04378	COG0445	tRNA wobble uridine modification
AMJ96_CH04379	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMJ96_CH04380	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMJ96_CH04382	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMJ96_PA00001	COG3668	Plasmid stabilization system
AMJ96_PA00003	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PA00004	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PA00005	COG1473	amidohydrolase
AMJ96_PA00007	COG1126	abc transporter atp-binding protein
AMJ96_PA00010	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PA00019	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_PA00020	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AMJ96_PA00021	COG4521	taurine ABC transporter
AMJ96_PA00024	COG1051	belongs to the nudix hydrolase family
AMJ96_PA00026	COG2267	carboxylic ester hydrolase activity
AMJ96_PA00028	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PA00029	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PA00032	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_PA00033	COG1177	transmembrane transport
AMJ96_PA00040	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMJ96_PA00041	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_PA00045	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMJ96_PA00053	COG1609	Transcriptional regulator
AMJ96_PA00054	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_PA00055	COG1802	Transcriptional regulator
AMJ96_PA00058	COG1609	Transcriptional regulator
AMJ96_PA00059	COG0747	negative chemotaxis
AMJ96_PA00060	COG0601	transmembrane transport
AMJ96_PA00061	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PA00062	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PA00063	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PA00067	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJ96_PA00070	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJ96_PA00072	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJ96_PA00076	COG0745	RESPONSE REGULATOR receiver
AMJ96_PA00077	COG2205	protein histidine kinase activity
AMJ96_PA00080	COG2030	dehydratase
AMJ96_PA00082	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMJ96_PA00083	COG1960	acyl-CoA dehydrogenase activity
AMJ96_PA00086	COG0183	Belongs to the thiolase family
AMJ96_PA00087	COG1960	acyl-CoA dehydrogenase activity
AMJ96_PA00089	COG0022	dehydrogenase e1 component
AMJ96_PA00095	COG0330	HflC and HflK could
AMJ96_PA00098	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PA00099	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PA00100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PA00101	COG0601	transmembrane transport
AMJ96_PA00103	COG1414	Transcriptional regulator
AMJ96_PA00105	COG3264	Mechanosensitive ion channel
AMJ96_PA00105	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
AMJ96_PA00108	COG1175	transmembrane transport
AMJ96_PA00109	COG0395	ABC-type sugar transport system, permease component
AMJ96_PA00110	COG3842	ATPase activity
AMJ96_PA00112	COG1349	DNA-binding transcription factor activity
AMJ96_PA00114	COG2801	Transposase and inactivated derivatives
AMJ96_PA00117	COG1132	(ABC) transporter
AMJ96_PA00118	COG0156	8-amino-7-oxononanoate synthase activity
AMJ96_PA00119	COG0517	IMP dehydrogenase activity
AMJ96_PA00120	COG1138	Cytochrome C-type biogenesis protein
AMJ96_PA00121	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMJ96_PA00122	COG4235	cytochrome complex assembly
AMJ96_PA00133	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJ96_PA00141	COG1845	cytochrome c oxidase, subunit III
AMJ96_PA00144	COG3256	nitric oxide reductase
AMJ96_PA00145	COG0714	Associated with various cellular activities
AMJ96_PA00147	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJ96_PA00151	COG2151	metal-sulfur cluster biosynthetic enzyme
AMJ96_PA00155	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJ96_PA00158	COG0745	RESPONSE REGULATOR receiver
AMJ96_PA00159	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_PA00161	COG1609	Transcriptional regulator
AMJ96_PA00162	COG0395	ABC-type sugar transport system, permease component
AMJ96_PA00165	COG3842	ATPase activity
AMJ96_PA00172	COG3174	membrane
AMJ96_PA00175	COG3300	MHYT domain
AMJ96_PA00175	COG5001	Diguanylate cyclase
AMJ96_PA00176	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_PA00180	COG0583	DNA-binding transcription factor activity
AMJ96_PA00182	COG3246	L-lysine catabolic process to acetate
AMJ96_PA00183	COG0824	Thioesterase
AMJ96_PA00183	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJ96_PA00184	COG1960	acyl-CoA dehydrogenase activity
AMJ96_PA00185	COG1042	CoA-binding domain protein
AMJ96_PA00185	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMJ96_PA00185	COG0045	succinate-CoA ligase (ADP-forming) activity
AMJ96_PA00186	COG1024	Enoyl-CoA hydratase
AMJ96_PA00187	COG0747	negative chemotaxis
AMJ96_PA00188	COG0601	transmembrane transport
AMJ96_PA00189	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PA00192	COG4166	transmembrane transport
AMJ96_PA00196	COG2304	oxidoreductase activity
AMJ96_PA00198	COG1609	Transcriptional regulator
AMJ96_PA00199	COG1063	alcohol dehydrogenase
AMJ96_PA00200	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJ96_PA00201	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PA00202	COG3265	gluconokinase activity
AMJ96_PA00203	COG2084	Dehydrogenase
AMJ96_PA00204	COG1129	ABC transporter
AMJ96_PA00205	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PA00208	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PA00210	COG0840	transmembrane signaling receptor activity
AMJ96_PA00215	COG1522	sequence-specific DNA binding
AMJ96_PA00217	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_PA00220	COG2040	homocysteine
AMJ96_PA00225	COG1116	anion transmembrane transporter activity
AMJ96_PA00230	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PA00231	COG1129	ABC transporter
AMJ96_PA00233	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PA00236	COG0251	oxidation-reduction process
AMJ96_PA00239	COG1082	Xylose isomerase domain protein TIM barrel
AMJ96_PA00240	COG0673	inositol 2-dehydrogenase activity
AMJ96_PA00241	COG0673	inositol 2-dehydrogenase activity
AMJ96_PA00242	COG1082	Xylose isomerase domain protein TIM barrel
AMJ96_PA00243	COG1129	ABC transporter
AMJ96_PA00247	COG1609	Transcriptional regulator
AMJ96_PA00248	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJ96_PA00249	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_PA00250	COG1126	abc transporter atp-binding protein
AMJ96_PA00251	COG0765	amino acid transport
AMJ96_PA00252	COG0765	amino acid transport
AMJ96_PA00253	COG4221	oxidoreductase activity
AMJ96_PA00256	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AMJ96_PA00257	COG1984	allophanate hydrolase subunit 2
AMJ96_PA00260	COG0439	Biotin carboxylase
AMJ96_PA00261	COG0511	ligase activity, forming carbon-carbon bonds
AMJ96_PA00266	COG1653	transport
AMJ96_PA00269	COG3842	ATPase activity
AMJ96_PA00272	COG0667	Aldo Keto reductase
AMJ96_PA00273	COG0583	DNA-binding transcription factor activity
AMJ96_PA00277	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMJ96_PA00281	COG0745	RESPONSE REGULATOR receiver
AMJ96_PA00283	COG1309	transcriptional regulator
AMJ96_PA00284	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJ96_PA00285	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJ96_PA00286	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJ96_PA00287	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMJ96_PA00289	COG1609	Transcriptional regulator
AMJ96_PA00290	COG1063	alcohol dehydrogenase
AMJ96_PA00291	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PA00293	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_PA00294	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
AMJ96_PA00295	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PA00297	COG4214	carbohydrate transport
AMJ96_PA00301	COG1877	trehalose-phosphatase activity
AMJ96_PA00303	COG1192	Involved in chromosome partitioning
AMJ96_PA00304	COG1475	DNA binding
AMJ96_PA00305	COG1414	Transcriptional regulator
AMJ96_PB00003	COG2801	Transposase and inactivated derivatives
AMJ96_PB00006	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMJ96_PB00018	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMJ96_PB00021	COG1431	PFAM Stem cell self-renewal protein Piwi
AMJ96_PB00022	COG1537	nuclear-transcribed mRNA catabolic process, no-go decay
AMJ96_PB00024	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMJ96_PB00030	COG1252	NADH dehydrogenase
AMJ96_PB00031	COG1396	sequence-specific DNA binding
AMJ96_PB00047	COG4191	Histidine kinase
AMJ96_PB00047	COG0784	Response regulator, receiver
AMJ96_PB00053	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_PB00063	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PB00064	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PB00070	COG0662	Cupin 2, conserved barrel domain protein
AMJ96_PB00072	COG4974	Belongs to the 'phage' integrase family
AMJ96_PB00073	COG0582	viral genome integration into host DNA
AMJ96_PB00074	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMJ96_PB00075	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJ96_PB00076	COG2963	transposase activity
AMJ96_PB00077	COG3436	PFAM IS66 Orf2 family protein
AMJ96_PB00078	COG4372	Transposase
AMJ96_PB00079	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMJ96_PB00085	COG2202	Pas domain
AMJ96_PB00085	COG3920	Histidine kinase
AMJ96_PB00102	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJ96_PB00103	COG4790	Type iii secretion
AMJ96_PB00104	COG1987	bacterial-type flagellum assembly
AMJ96_PB00105	COG4791	protein targeting
AMJ96_PB00106	COG4792	protein secretion
AMJ96_PB00107	COG5297	Belongs to the glycosyl hydrolase family 6
AMJ96_PB00108	COG4789	Type iii secretion
AMJ96_PB00113	COG1396	sequence-specific DNA binding
AMJ96_PB00118	COG1358	cellular component organization or biogenesis
AMJ96_PB00120	COG2801	Transposase and inactivated derivatives
AMJ96_PB00121	COG2963	transposase activity
AMJ96_PB00132	COG0596	Alpha beta hydrolase
AMJ96_PB00133	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PB00134	COG1129	ABC transporter
AMJ96_PB00135	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PB00136	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PB00142	COG0840	transmembrane signaling receptor activity
AMJ96_PB00148	COG2972	Histidine kinase
AMJ96_PB00148	COG0840	transmembrane signaling receptor activity
AMJ96_PB00149	COG4213	ABC transporter substrate-binding protein
AMJ96_PB00150	COG4372	Transposase
AMJ96_PB00151	COG3436	PFAM IS66 Orf2 family protein
AMJ96_PB00152	COG2963	transposase activity
AMJ96_PB00155	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_PB00156	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AMJ96_PB00158	COG2186	Transcriptional regulator
AMJ96_PB00161	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PB00162	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJ96_PB00163	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMJ96_PB00164	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PB00165	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PB00166	COG0436	Aminotransferase
AMJ96_PB00168	COG0431	NADPH-dependent FMN reductase
AMJ96_PB00169	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJ96_PB00169	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJ96_PB00173	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PB00174	COG1129	ABC transporter
AMJ96_PB00175	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PB00179	COG1252	NADH dehydrogenase
AMJ96_PB00181	COG0840	transmembrane signaling receptor activity
AMJ96_PB00189	COG3838	Conjugal transfer protein Trbc
AMJ96_PB00190	COG3702	type iv secretory pathway
AMJ96_PB00191	COG3451	type IV secretory pathway VirB4
AMJ96_PB00194	COG3704	protein secretion by the type IV secretion system
AMJ96_PB00196	COG3736	Type IV secretory pathway, component VirB8
AMJ96_PB00197	COG3504	Conjugal transfer protein
AMJ96_PB00198	COG2948	multi-organism process
AMJ96_PB00199	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
AMJ96_PB00208	COG3831	ATPase activity
AMJ96_PB00210	COG2161	toxin-antitoxin pair type II binding
AMJ96_PB00211	COG3505	Type IV secretory pathway VirD4
AMJ96_PB00221	COG1396	sequence-specific DNA binding
AMJ96_PB00232	COG5490	Phasin protein
AMJ96_PB00239	COG3501	Rhs element vgr protein
AMJ96_PB00262	COG0535	radical SAM domain protein
AMJ96_PB00264	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AMJ96_PB00266	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PB00270	COG3547	Transposase (IS116 IS110 IS902 family)
AMJ96_PB00272	COG2826	transposase and inactivated derivatives, IS30 family
AMJ96_PB00273	COG2801	Transposase and inactivated derivatives
AMJ96_PB00278	COG3436	PFAM IS66 Orf2 family protein
AMJ96_PB00284	COG1433	Dinitrogenase iron-molybdenum cofactor
AMJ96_PB00285	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00286	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00287	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00288	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00291	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AMJ96_PB00293	COG2124	cytochrome p450
AMJ96_PB00298	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AMJ96_PB00300	COG0316	Belongs to the HesB IscA family
AMJ96_PB00302	COG1104	cysteine desulfurase activity
AMJ96_PB00305	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AMJ96_PB00306	COG0644	oxidoreductase
AMJ96_PB00309	COG0535	radical SAM domain protein
AMJ96_PB00310	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMJ96_PB00311	COG5554	nitrogen fixation
AMJ96_PB00312	COG5554	nitrogen fixation
AMJ96_PB00314	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJ96_PB00323	COG4372	Transposase
AMJ96_PB00325	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMJ96_PB00326	COG4372	Transposase
AMJ96_PB00327	COG3436	PFAM IS66 Orf2 family protein
AMJ96_PB00328	COG2963	transposase activity
AMJ96_PB00330	COG0142	geranyltranstransferase activity
AMJ96_PB00331	COG1304	FMN binding
AMJ96_PB00333	COG1657	PFAM Prenyltransferase squalene oxidase
AMJ96_PB00334	COG2124	cytochrome p450
AMJ96_PB00335	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PB00336	COG2124	cytochrome p450
AMJ96_PB00337	COG2124	cytochrome p450
AMJ96_PB00338	COG2124	cytochrome p450
AMJ96_PB00340	COG2801	Transposase and inactivated derivatives
AMJ96_PB00346	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00348	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJ96_PB00352	COG0275	rRNA processing
AMJ96_PB00354	COG1484	DNA-dependent DNA replication
AMJ96_PB00363	COG3293	Transposase
AMJ96_PB00381	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJ96_PB00383	COG5490	Phasin protein
AMJ96_PB00385	COG3383	formate dehydrogenase (NAD+) activity
AMJ96_PB00386	COG5420	small protein containing a coiled-coil domain
AMJ96_PB00388	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00389	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00390	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
AMJ96_PB00398	COG2801	Transposase and inactivated derivatives
AMJ96_PB00399	COG2963	transposase activity
AMJ96_PB00404	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJ96_PB00404	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJ96_PB00409	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJ96_PB00411	COG2963	transposase activity
AMJ96_PB00416	COG2801	Transposase and inactivated derivatives
AMJ96_PB00417	COG2963	transposase activity
AMJ96_PB00420	COG2274	protein secretion by the type I secretion system
AMJ96_PB00421	COG2801	Transposase and inactivated derivatives
AMJ96_PB00426	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMJ96_PB00427	COG5490	Phasin protein
AMJ96_PB00429	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJ96_PB00433	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMJ96_PB00437	COG1192	Involved in chromosome partitioning
AMJ96_PB00438	COG1475	DNA binding
AMJ96_PB00440	COG0640	Transcriptional regulator
AMJ96_PC00002	COG0670	Belongs to the BI1 family
AMJ96_PC00010	COG4953	penicillin-binding protein 1C
AMJ96_PC00012	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJ96_PC00013	COG3034	peptidoglycan biosynthetic process
AMJ96_PC00016	COG2814	Major facilitator Superfamily
AMJ96_PC00019	COG1609	Transcriptional regulator
AMJ96_PC00022	COG1132	(ABC) transporter
AMJ96_PC00023	COG1132	(ABC) transporter
AMJ96_PC00026	COG0784	Response regulator, receiver
AMJ96_PC00026	COG4191	Histidine kinase
AMJ96_PC00028	COG3346	SURF1 family
AMJ96_PC00029	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMJ96_PC00030	COG1845	cytochrome c oxidase, subunit III
AMJ96_PC00031	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJ96_PC00032	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJ96_PC00035	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMJ96_PC00035	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJ96_PC00036	COG1132	(ABC) transporter
AMJ96_PC00038	COG0438	transferase activity, transferring glycosyl groups
AMJ96_PC00040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PC00042	COG4166	transmembrane transport
AMJ96_PC00049	COG1959	2 iron, 2 sulfur cluster binding
AMJ96_PC00055	COG0714	Associated with various cellular activities
AMJ96_PC00065	COG1234	tRNA 3'-trailer cleavage
AMJ96_PC00066	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AMJ96_PC00067	COG3485	protocatechuate 3,4-dioxygenase
AMJ96_PC00068	COG3485	protocatechuate 3,4-dioxygenase
AMJ96_PC00069	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMJ96_PC00070	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMJ96_PC00071	COG0583	DNA-binding transcription factor activity
AMJ96_PC00072	COG5642	Protein of unknown function (DUF2384)
AMJ96_PC00073	COG5654	RES domain protein
AMJ96_PC00077	COG3384	dioxygenase
AMJ96_PC00081	COG0484	heat shock protein binding
AMJ96_PC00083	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMJ96_PC00086	COG2986	histidine ammonia-lyase
AMJ96_PC00087	COG1228	amidohydrolase
AMJ96_PC00088	COG0402	S-adenosylhomocysteine deaminase activity
AMJ96_PC00090	COG2188	Transcriptional regulator
AMJ96_PC00095	COG2986	histidine ammonia-lyase
AMJ96_PC00097	COG0671	phosphoesterase, PA-phosphatase related
AMJ96_PC00102	COG4106	trans-aconitate 2-methyltransferase activity
AMJ96_PC00104	COG1486	melibiose metabolic process
AMJ96_PC00105	COG0747	negative chemotaxis
AMJ96_PC00106	COG0601	transmembrane transport
AMJ96_PC00107	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PC00108	COG4172	Belongs to the ABC transporter superfamily
AMJ96_PC00109	COG1486	melibiose metabolic process
AMJ96_PC00110	COG2345	Transcriptional regulator
AMJ96_PC00112	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PC00113	COG3842	ATPase activity
AMJ96_PC00116	COG1653	transport
AMJ96_PC00119	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PC00120	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PC00122	COG0793	Belongs to the peptidase S41A family
AMJ96_PC00127	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00128	COG1737	Transcriptional regulator
AMJ96_PC00133	COG1175	transmembrane transport
AMJ96_PC00135	COG0024	Methionine aminopeptidase
AMJ96_PC00148	COG0583	DNA-binding transcription factor activity
AMJ96_PC00152	COG0640	Transcriptional regulator
AMJ96_PC00163	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00183	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
AMJ96_PC00183	COG1672	PFAM Archaeal ATPase
AMJ96_PC00184	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_PC00186	COG0640	Transcriptional regulator
AMJ96_PC00188	COG1175	transmembrane transport
AMJ96_PC00197	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PC00199	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PC00208	COG1414	Transcriptional regulator
AMJ96_PC00210	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMJ96_PC00213	COG2814	Major facilitator Superfamily
AMJ96_PC00220	COG0784	Response regulator, receiver
AMJ96_PC00220	COG4191	Histidine kinase
AMJ96_PC00222	COG0730	response to heat
AMJ96_PC00223	COG3453	Protein conserved in bacteria
AMJ96_PC00223	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_PC00225	COG1522	sequence-specific DNA binding
AMJ96_PC00229	COG2072	flavoprotein involved in K transport
AMJ96_PC00230	COG1126	abc transporter atp-binding protein
AMJ96_PC00231	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_PC00232	COG0765	amino acid transport
AMJ96_PC00233	COG0765	amino acid transport
AMJ96_PC00237	COG1573	uracil-dna glycosylase
AMJ96_PC00253	COG2186	Transcriptional regulator
AMJ96_PC00254	COG0626	cystathionine gamma-synthase activity
AMJ96_PC00257	COG0395	ABC-type sugar transport system, permease component
AMJ96_PC00258	COG3842	ATPase activity
AMJ96_PC00260	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
AMJ96_PC00263	COG0596	Alpha beta hydrolase
AMJ96_PC00266	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMJ96_PC00267	COG4208	sulfate ABC transporter
AMJ96_PC00269	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMJ96_PC00273	COG2205	protein histidine kinase activity
AMJ96_PC00274	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AMJ96_PC00275	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AMJ96_PC00276	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AMJ96_PC00278	COG2372	response to copper ion
AMJ96_PC00279	COG1063	alcohol dehydrogenase
AMJ96_PC00283	COG1960	acyl-CoA dehydrogenase activity
AMJ96_PC00289	COG0410	ABC transporter
AMJ96_PC00294	COG1120	ATPase activity
AMJ96_PC00299	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PC00303	COG3347	Dehydrogenase
AMJ96_PC00303	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00304	COG4952	isomerase
AMJ96_PC00306	COG1595	DNA-templated transcription, initiation
AMJ96_PC00307	COG3964	amidohydrolase
AMJ96_PC00312	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00321	COG4964	Belongs to the GSP D family
AMJ96_PC00339	COG3119	arylsulfatase activity
AMJ96_PC00340	COG0583	DNA-binding transcription factor activity
AMJ96_PC00342	COG3836	Belongs to the HpcH HpaI aldolase family
AMJ96_PC00345	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PC00352	COG0352	thiamine-phosphate diphosphorylase activity
AMJ96_PC00355	COG0747	negative chemotaxis
AMJ96_PC00356	COG0601	transmembrane transport
AMJ96_PC00359	COG1921	L-seryl-tRNASec selenium transferase activity
AMJ96_PC00360	COG4172	Belongs to the ABC transporter superfamily
AMJ96_PC00361	COG3257	ureidoglycine aminohydrolase activity
AMJ96_PC00363	COG2186	Transcriptional regulator
AMJ96_PC00364	COG4221	oxidoreductase activity
AMJ96_PC00368	COG1027	Aspartate ammonia-lyase
AMJ96_PC00371	COG1621	beta-fructofuranosidase activity
AMJ96_PC00374	COG0395	ABC-type sugar transport system, permease component
AMJ96_PC00376	COG1653	transport
AMJ96_PC00377	COG1609	Transcriptional regulator
AMJ96_PC00386	COG0673	inositol 2-dehydrogenase activity
AMJ96_PC00388	COG0395	ABC-type sugar transport system, permease component
AMJ96_PC00390	COG3842	ATPase activity
AMJ96_PC00398	COG0251	oxidation-reduction process
AMJ96_PC00400	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00411	COG3459	Glycosyltransferase 36 associated
AMJ96_PC00413	COG2186	Transcriptional regulator
AMJ96_PC00414	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00415	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AMJ96_PC00420	COG0667	Aldo Keto reductase
AMJ96_PC00422	COG2894	cell division
AMJ96_PC00423	COG0850	regulation of cytokinetic process
AMJ96_PC00426	COG0069	glutamate synthase activity
AMJ96_PC00427	COG2218	PFAM glutamate synthase alpha subunit domain protein
AMJ96_PC00428	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AMJ96_PC00430	COG4977	sequence-specific DNA binding
AMJ96_PC00431	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_PC00432	COG4311	Sarcosine oxidase, delta subunit
AMJ96_PC00433	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJ96_PC00433	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJ96_PC00436	COG1309	transcriptional regulator
AMJ96_PC00438	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PC00439	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PC00442	COG1396	sequence-specific DNA binding
AMJ96_PC00449	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AMJ96_PC00450	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AMJ96_PC00452	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMJ96_PC00456	COG1609	Transcriptional regulator
AMJ96_PC00466	COG1192	Involved in chromosome partitioning
AMJ96_PC00467	COG1475	DNA binding
AMJ96_PC00469	COG1414	Transcriptional regulator
AMJ96_PD00009	COG4456	Virulence-associated protein
AMJ96_PD00011	COG0259	pyridoxamine-phosphate oxidase activity
AMJ96_PD00012	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PD00014	COG3321	synthase
AMJ96_PD00014	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PD00014	COG0604	alcohol dehydrogenase
AMJ96_PD00016	COG0318	PFAM AMP-dependent synthetase and ligase
AMJ96_PD00017	COG0183	Belongs to the thiolase family
AMJ96_PD00033	COG1461	Dihydroxyacetone kinase
AMJ96_PD00034	COG2376	Dihydroxyacetone kinase
AMJ96_PD00036	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00037	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PD00038	COG1129	ABC transporter
AMJ96_PD00040	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PD00041	COG0287	Prephenate dehydrogenase
AMJ96_PD00042	COG0698	ribose 5-phosphate isomerase
AMJ96_PD00045	COG1850	ribulose-bisphosphate carboxylase activity
AMJ96_PD00046	COG2186	Transcriptional regulator
AMJ96_PD00049	COG1132	(ABC) transporter
AMJ96_PD00050	COG1609	Transcriptional regulator
AMJ96_PD00051	COG1653	transport
AMJ96_PD00052	COG1175	transmembrane transport
AMJ96_PD00053	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00055	COG3685	Protein conserved in bacteria
AMJ96_PD00070	COG2202	Pas domain
AMJ96_PD00070	COG3920	Histidine kinase
AMJ96_PD00073	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJ96_PD00075	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJ96_PD00076	COG1063	alcohol dehydrogenase
AMJ96_PD00083	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AMJ96_PD00084	COG0583	DNA-binding transcription factor activity
AMJ96_PD00087	COG2203	Gaf domain
AMJ96_PD00087	COG4251	negative regulation of phosphorylation
AMJ96_PD00087	COG5001	Diguanylate cyclase
AMJ96_PD00087	COG3706	GGDEF domain
AMJ96_PD00088	COG3920	Histidine kinase
AMJ96_PD00089	COG0784	Response regulator, receiver
AMJ96_PD00089	COG4191	Histidine kinase
AMJ96_PD00096	COG0475	glutathione-regulated potassium exporter activity
AMJ96_PD00097	COG1609	Transcriptional regulator
AMJ96_PD00098	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_PD00099	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PD00100	COG3842	ATPase activity
AMJ96_PD00102	COG1175	transmembrane transport
AMJ96_PD00103	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00104	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_PD00107	COG1175	transmembrane transport
AMJ96_PD00109	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMJ96_PD00110	COG3609	addiction module antidote protein, CC2985 family
AMJ96_PD00112	COG2801	Transposase and inactivated derivatives
AMJ96_PD00113	COG2826	transposase and inactivated derivatives, IS30 family
AMJ96_PD00115	COG3547	Transposase (IS116 IS110 IS902 family)
AMJ96_PD00116	COG3443	Belongs to the bacterial solute-binding protein 9 family
AMJ96_PD00117	COG1414	Transcriptional regulator
AMJ96_PD00123	COG1802	Transcriptional regulator
AMJ96_PD00127	COG0488	(ABC) transporter
AMJ96_PD00139	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00142	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMJ96_PD00143	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMJ96_PD00144	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMJ96_PD00145	COG1454	alcohol dehydrogenase
AMJ96_PD00147	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_PD00148	COG0747	negative chemotaxis
AMJ96_PD00149	COG0601	transmembrane transport
AMJ96_PD00150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PD00151	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PD00152	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PD00155	COG0028	Belongs to the TPP enzyme family
AMJ96_PD00158	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMJ96_PD00159	COG0531	amino acid
AMJ96_PD00162	COG4221	oxidoreductase activity
AMJ96_PD00170	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00171	COG1063	alcohol dehydrogenase
AMJ96_PD00173	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_PD00180	COG2010	Cytochrome c
AMJ96_PD00183	COG2201	protein-glutamate methylesterase activity
AMJ96_PD00189	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJ96_PD00190	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJ96_PD00192	COG0243	molybdopterin cofactor binding
AMJ96_PD00195	COG0277	FAD linked oxidase domain protein
AMJ96_PD00195	COG0247	lactate metabolic process
AMJ96_PD00203	COG0420	3'-5' exonuclease activity
AMJ96_PD00204	COG4717	serine-type aminopeptidase activity
AMJ96_PD00208	COG0625	glutathione transferase activity
AMJ96_PD00209	COG5564	TIM-barrel signal transduction protein
AMJ96_PD00214	COG4589	Belongs to the CDS family
AMJ96_PD00217	COG0402	S-adenosylhomocysteine deaminase activity
AMJ96_PD00218	COG4106	trans-aconitate 2-methyltransferase activity
AMJ96_PD00219	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJ96_PD00221	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_PD00223	COG3842	ATPase activity
AMJ96_PD00225	COG3842	ATPase activity
AMJ96_PD00230	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00231	COG1609	Transcriptional regulator
AMJ96_PD00234	COG1609	Transcriptional regulator
AMJ96_PD00235	COG0584	glycerophosphoryl diester phosphodiesterase
AMJ96_PD00236	COG3842	ATPase activity
AMJ96_PD00240	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMJ96_PD00242	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJ96_PD00245	COG4988	ABC transporter
AMJ96_PD00246	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMJ96_PD00247	COG1271	oxidase subunit
AMJ96_PD00248	COG1294	oxidase, subunit
AMJ96_PD00252	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00256	COG0346	lactoylglutathione lyase activity
AMJ96_PD00258	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00259	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00262	COG2011	ABC-type metal ion transport system permease component
AMJ96_PD00264	COG1464	Belongs to the NlpA lipoprotein family
AMJ96_PD00265	COG2223	nitrite transmembrane transporter activity
AMJ96_PD00266	COG1396	sequence-specific DNA binding
AMJ96_PD00268	COG0765	amino acid transport
AMJ96_PD00271	COG2186	Transcriptional regulator
AMJ96_PD00273	COG0765	amino acid transport
AMJ96_PD00274	COG0765	amino acid transport
AMJ96_PD00276	COG1309	transcriptional regulator
AMJ96_PD00277	COG0840	transmembrane signaling receptor activity
AMJ96_PD00278	COG3608	succinylglutamate desuccinylase aspartoacylase
AMJ96_PD00279	COG0006	proline dipeptidase activity
AMJ96_PD00280	COG2423	ornithine cyclodeaminase activity
AMJ96_PD00281	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMJ96_PD00282	COG3473	Maleate cis-trans isomerase
AMJ96_PD00283	COG0765	amino acid transport
AMJ96_PD00284	COG0765	amino acid transport
AMJ96_PD00286	COG1126	abc transporter atp-binding protein
AMJ96_PD00287	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJ96_PD00288	COG1522	sequence-specific DNA binding
AMJ96_PD00289	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PD00290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJ96_PD00295	COG3842	ATPase activity
AMJ96_PD00298	COG1653	transport
AMJ96_PD00299	COG1609	Transcriptional regulator
AMJ96_PD00300	COG1414	Transcriptional regulator
AMJ96_PD00301	COG1475	DNA binding
AMJ96_PD00302	COG1192	Involved in chromosome partitioning
AMJ96_PD00304	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PD00305	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PD00306	COG1129	ABC transporter
AMJ96_PD00309	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PD00312	COG1609	Transcriptional regulator
AMJ96_PD00314	COG4191	Histidine kinase
AMJ96_PD00315	COG4566	intracellular signal transduction
AMJ96_PD00316	COG0745	RESPONSE REGULATOR receiver
AMJ96_PD00317	COG4566	intracellular signal transduction
AMJ96_PD00319	COG0778	Nitroreductase
AMJ96_PD00322	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PD00323	COG4172	Belongs to the ABC transporter superfamily
AMJ96_PD00324	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PD00325	COG0601	transmembrane transport
AMJ96_PD00326	COG0747	negative chemotaxis
AMJ96_PD00327	COG2186	Transcriptional regulator
AMJ96_PD00328	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_PD00329	COG3386	PFAM SMP-30 Gluconolaconase
AMJ96_PD00330	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_PD00331	COG0747	negative chemotaxis
AMJ96_PD00332	COG0601	transmembrane transport
AMJ96_PD00334	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PD00335	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PD00337	COG0697	spore germination
AMJ96_PD00340	COG0392	lysyltransferase activity
AMJ96_PD00345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_PD00346	COG1126	abc transporter atp-binding protein
AMJ96_PD00347	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJ96_PD00348	COG1609	Transcriptional regulator
AMJ96_PD00361	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMJ96_PD00363	COG2205	protein histidine kinase activity
AMJ96_PD00363	COG3850	Histidine kinase
AMJ96_PD00363	COG3437	response regulator, receiver
AMJ96_PD00363	COG4999	Histidine kinase
AMJ96_PD00367	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMJ96_PD00368	COG1120	ATPase activity
AMJ96_PD00370	COG1448	Aminotransferase
AMJ96_PD00371	COG0028	Belongs to the TPP enzyme family
AMJ96_PD00373	COG0366	Alpha amylase catalytic
AMJ96_PD00374	COG0366	Alpha amylase catalytic
AMJ96_PD00376	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJ96_PD00378	COG0598	Magnesium transport protein CorA
AMJ96_PD00379	COG1953	Uracil, thiamine, allantoin
AMJ96_PD00382	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJ96_PD00385	COG1609	Transcriptional regulator
AMJ96_PD00388	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00389	COG1175	transmembrane transport
AMJ96_PD00392	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
AMJ96_PD00398	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00399	COG1175	transmembrane transport
AMJ96_PD00402	COG1609	Transcriptional regulator
AMJ96_PD00405	COG2186	Transcriptional regulator
AMJ96_PD00406	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJ96_PD00408	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_PD00416	COG1175	transmembrane transport
AMJ96_PD00417	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00419	COG3842	ATPase activity
AMJ96_PD00426	COG5002	protein histidine kinase activity
AMJ96_PD00432	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMJ96_PD00440	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMJ96_PD00443	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PD00444	COG0473	3-isopropylmalate dehydrogenase activity
AMJ96_PD00445	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PD00446	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_PD00448	COG0235	Class ii aldolase
AMJ96_PD00449	COG1609	Transcriptional regulator
AMJ96_PD00450	COG2084	Dehydrogenase
AMJ96_PD00451	COG3622	Belongs to the hyi family
AMJ96_PD00452	COG3395	kinase activity
AMJ96_PD00457	COG0601	transmembrane transport
AMJ96_PD00458	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PD00459	COG4172	Belongs to the ABC transporter superfamily
AMJ96_PD00461	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_PD00466	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMJ96_PD00470	COG1522	sequence-specific DNA binding
AMJ96_PD00472	COG0840	transmembrane signaling receptor activity
AMJ96_PD00472	COG2972	Histidine kinase
AMJ96_PD00475	COG1522	sequence-specific DNA binding
AMJ96_PD00480	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PD00481	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJ96_PD00482	COG1802	Transcriptional regulator
AMJ96_PD00484	COG3791	Glutathione-dependent formaldehyde-activating
AMJ96_PD00485	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AMJ96_PD00486	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AMJ96_PD00488	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AMJ96_PD00489	COG2086	electron transfer activity
AMJ96_PD00491	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJ96_PD00491	COG1902	pentaerythritol trinitrate reductase activity
AMJ96_PD00493	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMJ96_PD00495	COG4176	ABC-type proline glycine betaine transport system permease component
AMJ96_PD00496	COG4175	Glycine betaine
AMJ96_PD00496	COG0517	IMP dehydrogenase activity
AMJ96_PD00498	COG2207	Transcriptional regulator
AMJ96_PD00498	COG3708	Transcriptional regulator
AMJ96_PD00500	COG0243	molybdopterin cofactor binding
AMJ96_PD00501	COG4251	negative regulation of phosphorylation
AMJ96_PD00501	COG2203	Gaf domain
AMJ96_PD00501	COG3706	GGDEF domain
AMJ96_PD00501	COG5001	Diguanylate cyclase
AMJ96_PD00514	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
AMJ96_PD00516	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMJ96_PD00521	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJ96_PD00522	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMJ96_PD00523	COG1522	sequence-specific DNA binding
AMJ96_PD00534	COG3961	Belongs to the TPP enzyme family
AMJ96_PD00535	COG3300	MHYT domain
AMJ96_PD00535	COG5001	Diguanylate cyclase
AMJ96_PD00536	COG0840	transmembrane signaling receptor activity
AMJ96_PD00537	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJ96_PD00538	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJ96_PD00539	COG1116	anion transmembrane transporter activity
AMJ96_PD00542	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMJ96_PD00546	COG0626	cystathionine gamma-synthase activity
AMJ96_PD00549	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AMJ96_PD00550	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMJ96_PD00551	COG0300	oxidoreductase activity
AMJ96_PD00552	COG2207	Transcriptional regulator
AMJ96_PD00554	COG4774	siderophore transport
AMJ96_PD00556	COG2885	chlorophyll binding
AMJ96_PD00557	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJ96_PD00561	COG0583	DNA-binding transcription factor activity
AMJ96_PD00564	COG4585	Histidine kinase
AMJ96_PD00565	COG1879	ABC-type sugar transport system periplasmic component
AMJ96_PD00566	COG1129	ABC transporter
AMJ96_PD00567	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMJ96_PD00572	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMJ96_PD00573	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJ96_PD00576	COG4191	Histidine kinase
AMJ96_PD00577	COG4566	intracellular signal transduction
AMJ96_PD00583	COG3239	Fatty acid desaturase
AMJ96_PD00585	COG1278	Cold shock
AMJ96_PD00590	COG2207	Transcriptional regulator
AMJ96_PD00591	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMJ96_PD00593	COG1012	belongs to the aldehyde dehydrogenase family
AMJ96_PD00594	COG2186	Transcriptional regulator
AMJ96_PD00597	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMJ96_PD00598	COG4702	Belongs to the UPF0303 family
AMJ96_PD00600	COG4948	Mandelate Racemase Muconate Lactonizing
AMJ96_PD00602	COG0656	L-ascorbic acid biosynthetic process
AMJ96_PD00603	COG3842	ATPase activity
AMJ96_PD00604	COG1653	transport
AMJ96_PD00605	COG1175	transmembrane transport
AMJ96_PD00606	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00608	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJ96_PD00610	COG2186	Transcriptional regulator
AMJ96_PD00611	COG2084	Dehydrogenase
AMJ96_PD00612	COG4608	Belongs to the ABC transporter superfamily
AMJ96_PD00613	COG0444	Belongs to the ABC transporter superfamily
AMJ96_PD00614	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PD00615	COG0601	transmembrane transport
AMJ96_PD00616	COG0747	negative chemotaxis
AMJ96_PD00620	COG0747	negative chemotaxis
AMJ96_PD00621	COG0601	transmembrane transport
AMJ96_PD00622	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMJ96_PD00627	COG1309	transcriptional regulator
AMJ96_PD00628	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJ96_PD00628	COG1017	nitric oxide dioxygenase activity
AMJ96_PD00631	COG2963	transposase activity
AMJ96_PD00632	COG3436	PFAM IS66 Orf2 family protein
AMJ96_PD00633	COG4372	Transposase
AMJ96_PD00642	COG0745	RESPONSE REGULATOR receiver
AMJ96_PD00643	COG1028	Short-chain dehydrogenase reductase Sdr
AMJ96_PD00644	COG0028	Belongs to the TPP enzyme family
AMJ96_PD00645	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMJ96_PD00647	COG3842	ATPase activity
AMJ96_PD00648	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJ96_PD00651	COG0156	8-amino-7-oxononanoate synthase activity
AMJ96_PD00656	COG3505	Type IV secretory pathway VirD4
AMJ96_PD00658	COG2161	toxin-antitoxin pair type II binding
AMJ96_PD00671	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
AMJ96_PD00672	COG2948	multi-organism process
AMJ96_PD00673	COG3504	Conjugal transfer protein
AMJ96_PD00674	COG3736	Type IV secretory pathway, component VirB8
AMJ96_PD00676	COG3704	protein secretion by the type IV secretion system
AMJ96_PD00679	COG3451	type IV secretory pathway VirB4
AMJ96_PD00680	COG3702	type iv secretory pathway
AMJ96_PD00681	COG3838	Conjugal transfer protein Trbc
AMJ96_PD00686	COG1475	DNA binding
AMJ96_PD00690	COG0673	inositol 2-dehydrogenase activity
AMJ96_PD00692	COG1175	transmembrane transport
AMJ96_PD00693	COG0395	ABC-type sugar transport system, permease component
AMJ96_PD00696	COG3842	ATPase activity
AMJ96_PD00697	COG1192	Involved in chromosome partitioning
AMJ96_PD00698	COG1475	DNA binding
AMJ96_PD00699	COG1414	Transcriptional regulator