AMJ96_CH00003	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH00004	PWY-7851	AMJ96_CH00004
AMJ96_CH00023	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_CH00023	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH00023	PWY-5744	glyoxylate assimilation
AMJ96_CH00023	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH00023	PWY-6722	candicidin biosynthesis
AMJ96_CH00024	PWY-2161	folate polyglutamylation
AMJ96_CH00031	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMJ96_CH00037	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH00037	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH00040	PWY-3961	phosphopantothenate biosynthesis II
AMJ96_CH00053	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH00053	PWY-7118	chitin degradation to ethanol
AMJ96_CH00053	PWY-7294	xylose degradation IV
AMJ96_CH00053	PWY-7295	L-arabinose degradation IV
AMJ96_CH00053	PWY-7854	AMJ96_CH00053
AMJ96_CH00071	PWY-3821	galactose degradation III
AMJ96_CH00071	PWY-6317	galactose degradation I (Leloir pathway)
AMJ96_CH00071	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMJ96_CH00071	PWY-6527	stachyose degradation
AMJ96_CH00071	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMJ96_CH00071	PWY-7344	UDP-D-galactose biosynthesis
AMJ96_CH00072	PWY-5129	sphingolipid biosynthesis (plants)
AMJ96_CH00072	PWY-7836	AMJ96_CH00072
AMJ96_CH00072	PWY-7838	AMJ96_CH00072
AMJ96_CH00072	PWY-7839	AMJ96_CH00072
AMJ96_CH00072	PWY-7841	AMJ96_CH00072
AMJ96_CH00091	PWY-6531	mannitol cycle
AMJ96_CH00092	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
AMJ96_CH00092	PWY-7248	pectin degradation III
AMJ96_CH00100	PWY-7205	CMP phosphorylation
AMJ96_CH00109	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH00109	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH00109	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH00109	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMJ96_CH00109	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH00109	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH00109	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH00109	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH00109	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH00109	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH00109	PWY-7858	AMJ96_CH00109
AMJ96_CH00109	PWYG-321	mycolate biosynthesis
AMJ96_CH00111	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH00111	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH00111	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH00111	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH00111	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH00111	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH00111	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH00111	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH00111	PWY-7858	AMJ96_CH00111
AMJ96_CH00111	PWYG-321	mycolate biosynthesis
AMJ96_CH00133	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_CH00133	PWY-7761	AMJ96_CH00133
AMJ96_CH00137	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AMJ96_CH00138	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMJ96_CH00151	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH00151	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH00151	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH00151	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH00161	PWY-7805	AMJ96_CH00161
AMJ96_CH00161	PWY-7807	AMJ96_CH00161
AMJ96_CH00162	PWY-7399	methylphosphonate degradation II
AMJ96_CH00162	PWY-7805	AMJ96_CH00162
AMJ96_CH00162	PWY-7807	AMJ96_CH00162
AMJ96_CH00163	PWY-7805	AMJ96_CH00163
AMJ96_CH00163	PWY-7807	AMJ96_CH00163
AMJ96_CH00169	PWY-7399	methylphosphonate degradation II
AMJ96_CH00169	PWY-7805	AMJ96_CH00169
AMJ96_CH00169	PWY-7807	AMJ96_CH00169
AMJ96_CH00171	PWY-7399	methylphosphonate degradation II
AMJ96_CH00171	PWY-7805	AMJ96_CH00171
AMJ96_CH00171	PWY-7807	AMJ96_CH00171
AMJ96_CH00174	PWY-7399	methylphosphonate degradation II
AMJ96_CH00174	PWY-7805	AMJ96_CH00174
AMJ96_CH00174	PWY-7807	AMJ96_CH00174
AMJ96_CH00176	PWY-1622	formaldehyde assimilation I (serine pathway)
AMJ96_CH00176	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH00177	PWY-2941	L-lysine biosynthesis II
AMJ96_CH00177	PWY-2942	L-lysine biosynthesis III
AMJ96_CH00177	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH00179	PWY-2722	trehalose degradation IV
AMJ96_CH00179	PWY-2723	trehalose degradation V
AMJ96_CH00179	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMJ96_CH00179	PWY-5661	GDP-glucose biosynthesis
AMJ96_CH00179	PWY-621	sucrose degradation III (sucrose invertase)
AMJ96_CH00179	PWY-7238	sucrose biosynthesis II
AMJ96_CH00179	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMJ96_CH00188	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_CH00197	PWY-6556	pyrimidine ribonucleosides salvage II
AMJ96_CH00197	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMJ96_CH00197	PWY-7193	pyrimidine ribonucleosides salvage I
AMJ96_CH00197	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMJ96_CH00198	PWY-4202	arsenate detoxification I (glutaredoxin)
AMJ96_CH00198	PWY-5532	adenosine nucleotides degradation IV
AMJ96_CH00198	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMJ96_CH00198	PWY-6608	guanosine nucleotides degradation III
AMJ96_CH00198	PWY-6609	adenine and adenosine salvage III
AMJ96_CH00198	PWY-6611	adenine and adenosine salvage V
AMJ96_CH00198	PWY-6620	guanine and guanosine salvage
AMJ96_CH00198	PWY-6627	salinosporamide A biosynthesis
AMJ96_CH00198	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AMJ96_CH00198	PWY-7179	purine deoxyribonucleosides degradation I
AMJ96_CH00198	PWY-7179-1	purine deoxyribonucleosides degradation
AMJ96_CH00199	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AMJ96_CH00200	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMJ96_CH00202	PWY-7183	pyrimidine nucleobases salvage I
AMJ96_CH00203	PWY-6610	adenine and adenosine salvage IV
AMJ96_CH00204	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AMJ96_CH00222	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMJ96_CH00226	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH00229	PWY-2201	folate transformations I
AMJ96_CH00229	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH00229	PWY-7909	AMJ96_CH00229
AMJ96_CH00239	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
AMJ96_CH00240	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
AMJ96_CH00240	PWY-5940	streptomycin biosynthesis
AMJ96_CH00244	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH00244	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH00244	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH00244	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMJ96_CH00244	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH00244	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH00244	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH00244	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH00244	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH00244	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH00244	PWY-7858	AMJ96_CH00244
AMJ96_CH00244	PWYG-321	mycolate biosynthesis
AMJ96_CH00246	PWY-7723	AMJ96_CH00246
AMJ96_CH00247	PWY-7723	AMJ96_CH00247
AMJ96_CH00255	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH00259	PWY-6899	base-degraded thiamin salvage
AMJ96_CH00259	PWY-7356	thiamin salvage IV (yeast)
AMJ96_CH00310	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH00321	PWY-6700	queuosine biosynthesis
AMJ96_CH00323	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AMJ96_CH00329	PWY-5686	UMP biosynthesis
AMJ96_CH00329	PWY-7790	AMJ96_CH00329
AMJ96_CH00329	PWY-7791	AMJ96_CH00329
AMJ96_CH00336	PWY-5692	allantoin degradation to glyoxylate II
AMJ96_CH00336	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AMJ96_CH00340	PWY-6936	seleno-amino acid biosynthesis
AMJ96_CH00350	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH00356	PWY-7851	AMJ96_CH00356
AMJ96_CH00361	PWY-5028	L-histidine degradation II
AMJ96_CH00361	PWY-5030	L-histidine degradation III
AMJ96_CH00368	PWY-5839	menaquinol-7 biosynthesis
AMJ96_CH00368	PWY-5844	menaquinol-9 biosynthesis
AMJ96_CH00368	PWY-5849	menaquinol-6 biosynthesis
AMJ96_CH00368	PWY-5890	menaquinol-10 biosynthesis
AMJ96_CH00368	PWY-5891	menaquinol-11 biosynthesis
AMJ96_CH00368	PWY-5892	menaquinol-12 biosynthesis
AMJ96_CH00368	PWY-5895	menaquinol-13 biosynthesis
AMJ96_CH00383	PWY-6825	phosphatidylcholine biosynthesis V
AMJ96_CH00387	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMJ96_CH00387	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AMJ96_CH00403	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH00408	PWY-1281	sulfoacetaldehyde degradation I
AMJ96_CH00408	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_CH00408	PWY-5482	pyruvate fermentation to acetate II
AMJ96_CH00408	PWY-5485	pyruvate fermentation to acetate IV
AMJ96_CH00408	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH00408	PWY-6637	sulfolactate degradation II
AMJ96_CH00408	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH00411	PWY-7884	AMJ96_CH00411
AMJ96_CH00447	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH00447	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH00489	PWY-5686	UMP biosynthesis
AMJ96_CH00489	PWY-7790	AMJ96_CH00489
AMJ96_CH00489	PWY-7791	AMJ96_CH00489
AMJ96_CH00493	PWY-5686	UMP biosynthesis
AMJ96_CH00493	PWY-7790	AMJ96_CH00493
AMJ96_CH00493	PWY-7791	AMJ96_CH00493
AMJ96_CH00496	PWY-3801	sucrose degradation II (sucrose synthase)
AMJ96_CH00496	PWY-5054	sorbitol biosynthesis I
AMJ96_CH00496	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AMJ96_CH00496	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMJ96_CH00496	PWY-5659	GDP-mannose biosynthesis
AMJ96_CH00496	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH00496	PWY-621	sucrose degradation III (sucrose invertase)
AMJ96_CH00496	PWY-622	starch biosynthesis
AMJ96_CH00496	PWY-6981	chitin biosynthesis
AMJ96_CH00496	PWY-6992	1,5-anhydrofructose degradation
AMJ96_CH00496	PWY-7238	sucrose biosynthesis II
AMJ96_CH00496	PWY-7347	sucrose biosynthesis III
AMJ96_CH00496	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMJ96_CH00521	PWY-723	alkylnitronates degradation
AMJ96_CH00534	PWY-4981	L-proline biosynthesis II (from arginine)
AMJ96_CH00534	PWY-4984	urea cycle
AMJ96_CH00534	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH00555	PWY-5686	UMP biosynthesis
AMJ96_CH00577	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMJ96_CH00577	PWY-5109	2-methylbutanoate biosynthesis
AMJ96_CH00577	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMJ96_CH00577	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMJ96_CH00577	PWY-5177	glutaryl-CoA degradation
AMJ96_CH00577	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH00577	PWY-6435	4-hydroxybenzoate biosynthesis V
AMJ96_CH00577	PWY-6583	pyruvate fermentation to butanol I
AMJ96_CH00577	PWY-6863	pyruvate fermentation to hexanol
AMJ96_CH00577	PWY-6883	pyruvate fermentation to butanol II
AMJ96_CH00577	PWY-6944	androstenedione degradation
AMJ96_CH00577	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMJ96_CH00577	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMJ96_CH00577	PWY-7007	methyl ketone biosynthesis
AMJ96_CH00577	PWY-7046	4-coumarate degradation (anaerobic)
AMJ96_CH00577	PWY-7094	fatty acid salvage
AMJ96_CH00577	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMJ96_CH00577	PWY-735	jasmonic acid biosynthesis
AMJ96_CH00577	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMJ96_CH00577	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMJ96_CH00577	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMJ96_CH00577	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMJ96_CH00577	PWY-7726	AMJ96_CH00577
AMJ96_CH00577	PWY-7778	AMJ96_CH00577
AMJ96_CH00577	PWY-7779	AMJ96_CH00577
AMJ96_CH00580	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH00587	PWY-3821	galactose degradation III
AMJ96_CH00587	PWY-6317	galactose degradation I (Leloir pathway)
AMJ96_CH00587	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMJ96_CH00587	PWY-6527	stachyose degradation
AMJ96_CH00587	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMJ96_CH00587	PWY-7344	UDP-D-galactose biosynthesis
AMJ96_CH00615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH00615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH00615	PWY-7953	AMJ96_CH00615
AMJ96_CH00630	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH00630	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH00644	PWY-2941	L-lysine biosynthesis II
AMJ96_CH00644	PWY-2942	L-lysine biosynthesis III
AMJ96_CH00644	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH00696	PWY-7980	AMJ96_CH00696
AMJ96_CH00710	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
AMJ96_CH00736	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMJ96_CH00736	PWY-2201	folate transformations I
AMJ96_CH00736	PWY-3841	folate transformations II
AMJ96_CH00736	PWY-5030	L-histidine degradation III
AMJ96_CH00736	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH00736	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMJ96_CH00736	PWY-7909	AMJ96_CH00736
AMJ96_CH00744	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH00744	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH00744	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH00744	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH00745	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMJ96_CH00745	PWY-6855	chitin degradation I (archaea)
AMJ96_CH00745	PWY-6906	chitin derivatives degradation
AMJ96_CH00746	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMJ96_CH00748	PWY-381	nitrate reduction II (assimilatory)
AMJ96_CH00748	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_CH00748	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH00748	PWY-6963	ammonia assimilation cycle I
AMJ96_CH00748	PWY-6964	ammonia assimilation cycle II
AMJ96_CH00756	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH00773	PWY-5642	2,4-dinitrotoluene degradation
AMJ96_CH00780	PWY-5530	sorbitol biosynthesis II
AMJ96_CH00780	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH00788	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMJ96_CH00788	PWY-6808	dTDP-D-forosamine biosynthesis
AMJ96_CH00788	PWY-6942	dTDP-D-desosamine biosynthesis
AMJ96_CH00788	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMJ96_CH00788	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMJ96_CH00788	PWY-6974	dTDP-L-olivose biosynthesis
AMJ96_CH00788	PWY-6976	dTDP-L-mycarose biosynthesis
AMJ96_CH00788	PWY-7104	dTDP-L-megosamine biosynthesis
AMJ96_CH00788	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMJ96_CH00788	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMJ96_CH00788	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMJ96_CH00788	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMJ96_CH00788	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMJ96_CH00788	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMJ96_CH00788	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMJ96_CH00788	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMJ96_CH00788	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMJ96_CH00788	PWY-7688	AMJ96_CH00788
AMJ96_CH00788	PWY-7814	AMJ96_CH00788
AMJ96_CH00789	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMJ96_CH00789	PWY-7688	AMJ96_CH00789
AMJ96_CH00796	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_CH00798	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMJ96_CH00808	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMJ96_CH00808	PWY-6808	dTDP-D-forosamine biosynthesis
AMJ96_CH00808	PWY-6942	dTDP-D-desosamine biosynthesis
AMJ96_CH00808	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMJ96_CH00808	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMJ96_CH00808	PWY-6974	dTDP-L-olivose biosynthesis
AMJ96_CH00808	PWY-6976	dTDP-L-mycarose biosynthesis
AMJ96_CH00808	PWY-7104	dTDP-L-megosamine biosynthesis
AMJ96_CH00808	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMJ96_CH00808	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMJ96_CH00808	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMJ96_CH00808	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMJ96_CH00808	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMJ96_CH00808	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMJ96_CH00808	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMJ96_CH00808	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMJ96_CH00808	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMJ96_CH00808	PWY-7688	AMJ96_CH00808
AMJ96_CH00808	PWY-7814	AMJ96_CH00808
AMJ96_CH00809	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AMJ96_CH00809	PWY-5739	GDP-D-perosamine biosynthesis
AMJ96_CH00809	PWY-5740	GDP-L-colitose biosynthesis
AMJ96_CH00809	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AMJ96_CH00809	PWY-7573	GDP-mycosamine biosynthesis
AMJ96_CH00810	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AMJ96_CH00818	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMJ96_CH00818	PWY-6596	adenosine nucleotides degradation I
AMJ96_CH00818	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH00825	PWY-6840	homoglutathione biosynthesis
AMJ96_CH00825	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMJ96_CH00853	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMJ96_CH00853	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH00853	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_CH00853	PWY-7863	AMJ96_CH00853
AMJ96_CH00866	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AMJ96_CH00875	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMJ96_CH00875	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_CH00875	PWY-7242	D-fructuronate degradation
AMJ96_CH00875	PWY-7310	D-glucosaminate degradation
AMJ96_CH00875	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMJ96_CH00876	PWY-7130	L-glucose degradation
AMJ96_CH00894	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH00905	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH00907	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH00907	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH00907	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH00934	PWY-6891	thiazole biosynthesis II (Bacillus)
AMJ96_CH00934	PWY-6892	thiazole biosynthesis I (E. coli)
AMJ96_CH00934	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH00953	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH00953	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_CH00953	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMJ96_CH00953	PWY-7991	AMJ96_CH00953
AMJ96_CH00954	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH00959	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH00959	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH00959	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH00959	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH00959	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH00959	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH00959	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH00959	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH00959	PWY-7858	AMJ96_CH00959
AMJ96_CH00959	PWYG-321	mycolate biosynthesis
AMJ96_CH00962	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH00962	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH00973	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH00973	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_CH00973	PWY-6692	Fe(II) oxidation
AMJ96_CH00973	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH00982	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH00983	PWY-702	L-methionine biosynthesis II
AMJ96_CH01022	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_CH01022	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH01022	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_CH01022	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH01089	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_CH01089	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH01089	PWY-5744	glyoxylate assimilation
AMJ96_CH01089	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH01089	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH01089	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_CH01089	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH01095	PWY-7644	heparin degradation
AMJ96_CH01101	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH01157	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMJ96_CH01166	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH01166	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH01166	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH01166	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH01170	PWY-5278	sulfite oxidation III
AMJ96_CH01170	PWY-5340	sulfate activation for sulfonation
AMJ96_CH01170	PWY-6683	sulfate reduction III (assimilatory)
AMJ96_CH01170	PWY-6932	selenate reduction
AMJ96_CH01171	PWY-5278	sulfite oxidation III
AMJ96_CH01171	PWY-5340	sulfate activation for sulfonation
AMJ96_CH01171	PWY-6683	sulfate reduction III (assimilatory)
AMJ96_CH01171	PWY-6932	selenate reduction
AMJ96_CH01174	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AMJ96_CH01174	PWY-7494	choline degradation IV
AMJ96_CH01175	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AMJ96_CH01175	PWY-7494	choline degradation IV
AMJ96_CH01227	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMJ96_CH01246	PWY-6854	ethylene biosynthesis III (microbes)
AMJ96_CH01284	PWY-5941	glycogen degradation II (eukaryotic)
AMJ96_CH01284	PWY-6724	starch degradation II
AMJ96_CH01284	PWY-6737	starch degradation V
AMJ96_CH01284	PWY-7238	sucrose biosynthesis II
AMJ96_CH01306	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH01306	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH01306	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH01306	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH01318	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH01318	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH01322	PWY-6855	chitin degradation I (archaea)
AMJ96_CH01322	PWY-6902	chitin degradation II
AMJ96_CH01322	PWY-7822	AMJ96_CH01322
AMJ96_CH01356	PWY-381	nitrate reduction II (assimilatory)
AMJ96_CH01356	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_CH01356	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH01356	PWY-6963	ammonia assimilation cycle I
AMJ96_CH01356	PWY-6964	ammonia assimilation cycle II
AMJ96_CH01368	PWY-6617	adenosine nucleotides degradation III
AMJ96_CH01384	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_CH01393	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AMJ96_CH01393	PWY-5739	GDP-D-perosamine biosynthesis
AMJ96_CH01393	PWY-5740	GDP-L-colitose biosynthesis
AMJ96_CH01393	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AMJ96_CH01393	PWY-7573	GDP-mycosamine biosynthesis
AMJ96_CH01425	PWY-2941	L-lysine biosynthesis II
AMJ96_CH01425	PWY-2942	L-lysine biosynthesis III
AMJ96_CH01425	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH01432	PWY-6012	acyl carrier protein metabolism I
AMJ96_CH01432	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMJ96_CH01432	PWY-6289	petrobactin biosynthesis
AMJ96_CH01440	PWY-5963	thio-molybdenum cofactor biosynthesis
AMJ96_CH01444	PWY-6854	ethylene biosynthesis III (microbes)
AMJ96_CH01456	PWY-5669	phosphatidylethanolamine biosynthesis I
AMJ96_CH01457	PWY-5669	phosphatidylethanolamine biosynthesis I
AMJ96_CH01469	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH01469	PWY-6871	3-methylbutanol biosynthesis
AMJ96_CH01471	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH01472	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH01473	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH01479	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH01479	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH01479	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH01479	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH01483	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_CH01493	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_CH01493	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AMJ96_CH01493	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH01494	PWY-5367	petroselinate biosynthesis
AMJ96_CH01494	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH01494	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH01494	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH01494	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMJ96_CH01494	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH01494	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH01494	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH01494	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH01494	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH01494	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH01494	PWY-7858	AMJ96_CH01494
AMJ96_CH01494	PWYG-321	mycolate biosynthesis
AMJ96_CH01499	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH01516	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMJ96_CH01516	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMJ96_CH01516	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH01516	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH01516	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMJ96_CH01516	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH01516	PWY-7205	CMP phosphorylation
AMJ96_CH01516	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH01516	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH01516	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH01516	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH01516	PWY-7224	purine deoxyribonucleosides salvage
AMJ96_CH01516	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH01516	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH01520	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_CH01520	PWY-7887	AMJ96_CH01520
AMJ96_CH01522	PWY-5269	cardiolipin biosynthesis II
AMJ96_CH01522	PWY-5668	cardiolipin biosynthesis I
AMJ96_CH01522	PWY-7817	AMJ96_CH01522
AMJ96_CH01530	PWY-7399	methylphosphonate degradation II
AMJ96_CH01530	PWY-7805	AMJ96_CH01530
AMJ96_CH01530	PWY-7807	AMJ96_CH01530
AMJ96_CH01531	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH01531	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMJ96_CH01532	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH01532	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH01532	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH01546	PWY-7802	AMJ96_CH01546
AMJ96_CH01548	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMJ96_CH01548	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMJ96_CH01552	PWY-1622	formaldehyde assimilation I (serine pathway)
AMJ96_CH01552	PWY-181	photorespiration
AMJ96_CH01552	PWY-2161	folate polyglutamylation
AMJ96_CH01552	PWY-2201	folate transformations I
AMJ96_CH01552	PWY-3661	glycine betaine degradation I
AMJ96_CH01552	PWY-3661-1	glycine betaine degradation II (mammalian)
AMJ96_CH01552	PWY-3841	folate transformations II
AMJ96_CH01552	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH01554	PWY-7991	AMJ96_CH01554
AMJ96_CH01555	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH01555	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_CH01555	PWY-7980	AMJ96_CH01555
AMJ96_CH01559	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH01559	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_CH01561	PWY-7805	AMJ96_CH01561
AMJ96_CH01561	PWY-7807	AMJ96_CH01561
AMJ96_CH01566	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_CH01573	PWY-1001	cellulose biosynthesis
AMJ96_CH01575	PWY-6788	cellulose degradation II (fungi)
AMJ96_CH01591	PWY-6655	xanthan biosynthesis
AMJ96_CH01591	PWY-6658	acetan biosynthesis
AMJ96_CH01595	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH01595	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMJ96_CH01595	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMJ96_CH01599	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH01599	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH01600	PWY-40	putrescine biosynthesis I
AMJ96_CH01600	PWY-6305	putrescine biosynthesis IV
AMJ96_CH01615	PWY-5692	allantoin degradation to glyoxylate II
AMJ96_CH01615	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AMJ96_CH01650	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMJ96_CH01650	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMJ96_CH01652	PWY-5741	ethylmalonyl-CoA pathway
AMJ96_CH01652	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH01652	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH01652	PWY-6728	methylaspartate cycle
AMJ96_CH01652	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_CH01652	PWY-7854	AMJ96_CH01652
AMJ96_CH01675	PWY-5686	UMP biosynthesis
AMJ96_CH01675	PWY-7790	AMJ96_CH01675
AMJ96_CH01675	PWY-7791	AMJ96_CH01675
AMJ96_CH01679	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH01679	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH01679	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH01679	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH01683	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMJ96_CH01683	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMJ96_CH01683	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMJ96_CH01737	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH01747	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH01747	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH01747	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH01747	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH01749	PWY-7511	protein ubiquitylation
AMJ96_CH01789	PWY-6134	L-tyrosine biosynthesis IV
AMJ96_CH01789	PWY-7158	L-phenylalanine degradation V
AMJ96_CH01803	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMJ96_CH01803	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH01803	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH01803	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH01803	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH01803	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH01803	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH01803	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH01825	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMJ96_CH01825	PWY-7927	AMJ96_CH01825
AMJ96_CH01834	PWY-6683	sulfate reduction III (assimilatory)
AMJ96_CH01876	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AMJ96_CH01877	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_CH01877	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMJ96_CH01877	PWY-6596	adenosine nucleotides degradation I
AMJ96_CH01877	PWY-6606	guanosine nucleotides degradation II
AMJ96_CH01877	PWY-6607	guanosine nucleotides degradation I
AMJ96_CH01877	PWY-6608	guanosine nucleotides degradation III
AMJ96_CH01877	PWY-7185	UTP and CTP dephosphorylation I
AMJ96_CH01877	PWY-7821	AMJ96_CH01877
AMJ96_CH01907	PWY-7799	AMJ96_CH01907
AMJ96_CH01907	PWY-7800	AMJ96_CH01907
AMJ96_CH01914	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMJ96_CH01929	PWY-7801	AMJ96_CH01929
AMJ96_CH01932	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH01932	PWY-6416	quinate degradation II
AMJ96_CH01932	PWY-6707	gallate biosynthesis
AMJ96_CH01941	PWY-7805	AMJ96_CH01941
AMJ96_CH01941	PWY-7807	AMJ96_CH01941
AMJ96_CH01945	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH01946	PWY-5386	methylglyoxal degradation I
AMJ96_CH01966	PWY-6936	seleno-amino acid biosynthesis
AMJ96_CH01966	PWY-7274	D-cycloserine biosynthesis
AMJ96_CH01966	PWY-7870	AMJ96_CH01966
AMJ96_CH01986	PWY-5667	CDP-diacylglycerol biosynthesis I
AMJ96_CH01986	PWY-5981	CDP-diacylglycerol biosynthesis III
AMJ96_CH01986	PWY-7817	AMJ96_CH01986
AMJ96_CH01990	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH01990	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH01990	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH01990	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMJ96_CH01990	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH01990	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH01990	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH01990	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH01990	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH01990	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH01990	PWY-7858	AMJ96_CH01990
AMJ96_CH01990	PWYG-321	mycolate biosynthesis
AMJ96_CH01999	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMJ96_CH01999	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMJ96_CH02000	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH02000	PWY-1622	formaldehyde assimilation I (serine pathway)
AMJ96_CH02000	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMJ96_CH02000	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH02000	PWY-5723	Rubisco shunt
AMJ96_CH02000	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH02000	PWY-6886	1-butanol autotrophic biosynthesis
AMJ96_CH02000	PWY-6901	superpathway of glucose and xylose degradation
AMJ96_CH02000	PWY-7003	glycerol degradation to butanol
AMJ96_CH02000	PWY-7124	ethylene biosynthesis V (engineered)
AMJ96_CH02000	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMJ96_CH02007	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMJ96_CH02007	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMJ96_CH02010	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMJ96_CH02010	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMJ96_CH02014	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH02050	PWY-5194	siroheme biosynthesis
AMJ96_CH02050	PWY-5196	factor 430 biosynthesis
AMJ96_CH02050	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMJ96_CH02052	PWY-6683	sulfate reduction III (assimilatory)
AMJ96_CH02099	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH02114	PWY-6486	D-galacturonate degradation II
AMJ96_CH02114	PWY-6497	D-galactarate degradation II
AMJ96_CH02114	PWY-6499	D-glucarate degradation II
AMJ96_CH02114	PWY-6501	D-glucuronate degradation II
AMJ96_CH02115	PWY-7242	D-fructuronate degradation
AMJ96_CH02131	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH02138	PWY-6826	phosphatidylcholine biosynthesis VI
AMJ96_CH02149	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMJ96_CH02150	PWY-6749	CMP-legionaminate biosynthesis I
AMJ96_CH02161	PWY-381	nitrate reduction II (assimilatory)
AMJ96_CH02161	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_CH02161	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH02161	PWY-6963	ammonia assimilation cycle I
AMJ96_CH02161	PWY-6964	ammonia assimilation cycle II
AMJ96_CH02163	PWY-6938	NADH repair
AMJ96_CH02174	PWY-7851	AMJ96_CH02174
AMJ96_CH02177	PWY-6700	queuosine biosynthesis
AMJ96_CH02178	PWY-6700	queuosine biosynthesis
AMJ96_CH02201	PWY-40	putrescine biosynthesis I
AMJ96_CH02201	PWY-6305	putrescine biosynthesis IV
AMJ96_CH02204	PWY-4041	&gamma;-glutamyl cycle
AMJ96_CH02204	PWY-4061	glutathione-mediated detoxification I
AMJ96_CH02204	PWY-5826	hypoglycin biosynthesis
AMJ96_CH02204	PWY-6842	glutathione-mediated detoxification II
AMJ96_CH02204	PWY-7112	4-hydroxy-2-nonenal detoxification
AMJ96_CH02204	PWY-7559	glutathione degradation (DUG pathway - yeast)
AMJ96_CH02218	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMJ96_CH02218	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH02218	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH02218	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMJ96_CH02218	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH02218	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH02219	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH02219	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH02234	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_CH02235	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_CH02243	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMJ96_CH02243	PWY-7177	UTP and CTP dephosphorylation II
AMJ96_CH02243	PWY-7185	UTP and CTP dephosphorylation I
AMJ96_CH02245	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH02245	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH02245	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH02245	PWY-7003	glycerol degradation to butanol
AMJ96_CH02260	PWY-5663	tetrahydrobiopterin biosynthesis I
AMJ96_CH02260	PWY-5664	tetrahydrobiopterin biosynthesis II
AMJ96_CH02260	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMJ96_CH02260	PWY-6703	preQ<sub>0</sub> biosynthesis
AMJ96_CH02260	PWY-6983	tetrahydrobiopterin biosynthesis III
AMJ96_CH02260	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMJ96_CH02260	PWY-7852	AMJ96_CH02260
AMJ96_CH02281	PWY-6825	phosphatidylcholine biosynthesis V
AMJ96_CH02283	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMJ96_CH02283	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMJ96_CH02287	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH02287	PWY-3162	L-tryptophan degradation V (side chain pathway)
AMJ96_CH02287	PWY-5057	L-valine degradation II
AMJ96_CH02287	PWY-5076	L-leucine degradation III
AMJ96_CH02287	PWY-5078	L-isoleucine degradation II
AMJ96_CH02287	PWY-5079	L-phenylalanine degradation III
AMJ96_CH02287	PWY-5082	L-methionine degradation III
AMJ96_CH02287	PWY-5480	pyruvate fermentation to ethanol I
AMJ96_CH02287	PWY-5486	pyruvate fermentation to ethanol II
AMJ96_CH02287	PWY-5751	phenylethanol biosynthesis
AMJ96_CH02287	PWY-6313	serotonin degradation
AMJ96_CH02287	PWY-6333	acetaldehyde biosynthesis I
AMJ96_CH02287	PWY-6342	noradrenaline and adrenaline degradation
AMJ96_CH02287	PWY-6587	pyruvate fermentation to ethanol III
AMJ96_CH02287	PWY-6802	salidroside biosynthesis
AMJ96_CH02287	PWY-6871	3-methylbutanol biosynthesis
AMJ96_CH02287	PWY-7013	L-1,2-propanediol degradation
AMJ96_CH02287	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH02287	PWY-7118	chitin degradation to ethanol
AMJ96_CH02287	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMJ96_CH02287	PWY-7798	AMJ96_CH02287
AMJ96_CH02292	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_CH02292	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH02292	PWY-5744	glyoxylate assimilation
AMJ96_CH02292	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH02292	PWY-6722	candicidin biosynthesis
AMJ96_CH02310	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMJ96_CH02315	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMJ96_CH02318	PWY-7883	AMJ96_CH02318
AMJ96_CH02331	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH02331	PWY-5723	Rubisco shunt
AMJ96_CH02334	PWY-6123	inosine-5'-phosphate biosynthesis I
AMJ96_CH02334	PWY-6124	inosine-5'-phosphate biosynthesis II
AMJ96_CH02334	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH02334	PWY-7234	inosine-5'-phosphate biosynthesis III
AMJ96_CH02340	PWY-6123	inosine-5'-phosphate biosynthesis I
AMJ96_CH02340	PWY-6124	inosine-5'-phosphate biosynthesis II
AMJ96_CH02340	PWY-7234	inosine-5'-phosphate biosynthesis III
AMJ96_CH02341	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH02341	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH02341	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH02343	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH02343	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH02343	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH02348	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMJ96_CH02348	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMJ96_CH02348	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMJ96_CH02351	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH02351	PWY-6416	quinate degradation II
AMJ96_CH02351	PWY-6707	gallate biosynthesis
AMJ96_CH02353	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH02377	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH02377	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH02381	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH02381	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH02381	PWY-6728	methylaspartate cycle
AMJ96_CH02381	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH02381	PWY-7124	ethylene biosynthesis V (engineered)
AMJ96_CH02381	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_CH02381	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMJ96_CH02389	PWY-6019	pseudouridine degradation
AMJ96_CH02398	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMJ96_CH02398	PWY-6148	tetrahydromethanopterin biosynthesis
AMJ96_CH02398	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMJ96_CH02398	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMJ96_CH02398	PWY-7852	AMJ96_CH02398
AMJ96_CH02398	PWY-7853	AMJ96_CH02398
AMJ96_CH02399	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMJ96_CH02399	PWY-6148	tetrahydromethanopterin biosynthesis
AMJ96_CH02399	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMJ96_CH02399	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMJ96_CH02400	PWY-6614	tetrahydrofolate biosynthesis
AMJ96_CH02419	PWY-1281	sulfoacetaldehyde degradation I
AMJ96_CH02419	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_CH02419	PWY-5482	pyruvate fermentation to acetate II
AMJ96_CH02419	PWY-5485	pyruvate fermentation to acetate IV
AMJ96_CH02419	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH02419	PWY-6637	sulfolactate degradation II
AMJ96_CH02419	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH02425	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMJ96_CH02428	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMJ96_CH02428	PWY-6164	3-dehydroquinate biosynthesis I
AMJ96_CH02428	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMJ96_CH02430	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_CH02430	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMJ96_CH02430	PWY-7761	AMJ96_CH02430
AMJ96_CH02432	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH02434	PWY-6164	3-dehydroquinate biosynthesis I
AMJ96_CH02436	PWY-4081	glutathione redox reactions I
AMJ96_CH02440	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH02440	PWY-5723	Rubisco shunt
AMJ96_CH02441	PWY-181	photorespiration
AMJ96_CH02443	PWY-5392	reductive TCA cycle II
AMJ96_CH02443	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH02443	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH02443	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH02443	PWY-6728	methylaspartate cycle
AMJ96_CH02443	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH02443	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_CH02443	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_CH02445	PWY-5392	reductive TCA cycle II
AMJ96_CH02445	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH02445	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH02445	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH02445	PWY-6728	methylaspartate cycle
AMJ96_CH02445	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH02445	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_CH02445	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_CH02447	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH02447	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH02452	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_CH02453	PWY-5839	menaquinol-7 biosynthesis
AMJ96_CH02453	PWY-5844	menaquinol-9 biosynthesis
AMJ96_CH02453	PWY-5849	menaquinol-6 biosynthesis
AMJ96_CH02453	PWY-5890	menaquinol-10 biosynthesis
AMJ96_CH02453	PWY-5891	menaquinol-11 biosynthesis
AMJ96_CH02453	PWY-5892	menaquinol-12 biosynthesis
AMJ96_CH02453	PWY-5895	menaquinol-13 biosynthesis
AMJ96_CH02458	PWY-4261	glycerol degradation I
AMJ96_CH02460	PWY-6891	thiazole biosynthesis II (Bacillus)
AMJ96_CH02460	PWY-6892	thiazole biosynthesis I (E. coli)
AMJ96_CH02460	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH02468	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AMJ96_CH02468	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AMJ96_CH02508	PWY-7039	phosphatidate metabolism, as a signaling molecule
AMJ96_CH02508	PWY-7817	AMJ96_CH02508
AMJ96_CH02509	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMJ96_CH02509	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMJ96_CH02509	PWY-7964	AMJ96_CH02509
AMJ96_CH02509	PWY-7965	AMJ96_CH02509
AMJ96_CH02509	PWY-7966	AMJ96_CH02509
AMJ96_CH02509	PWY-7967	AMJ96_CH02509
AMJ96_CH02509	PWY-7968	AMJ96_CH02509
AMJ96_CH02509	PWY-7969	AMJ96_CH02509
AMJ96_CH02509	PWY-7970	AMJ96_CH02509
AMJ96_CH02510	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMJ96_CH02510	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMJ96_CH02510	PWY-7961	AMJ96_CH02510
AMJ96_CH02510	PWY-7963	AMJ96_CH02510
AMJ96_CH02510	PWY-7964	AMJ96_CH02510
AMJ96_CH02510	PWY-7965	AMJ96_CH02510
AMJ96_CH02510	PWY-7966	AMJ96_CH02510
AMJ96_CH02510	PWY-7967	AMJ96_CH02510
AMJ96_CH02510	PWY-7968	AMJ96_CH02510
AMJ96_CH02510	PWY-7969	AMJ96_CH02510
AMJ96_CH02510	PWY-7970	AMJ96_CH02510
AMJ96_CH02510	PWY-7975	AMJ96_CH02510
AMJ96_CH02531	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH02531	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH02531	PWY-7953	AMJ96_CH02531
AMJ96_CH02544	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMJ96_CH02544	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMJ96_CH02544	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMJ96_CH02544	PWY-5994	palmitate biosynthesis I (animals and fungi)
AMJ96_CH02544	PWY-6113	superpathway of mycolate biosynthesis
AMJ96_CH02544	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMJ96_CH02544	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH02544	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMJ96_CH02544	PWY-7663	gondoate biosynthesis (anaerobic)
AMJ96_CH02544	PWY-7664	oleate biosynthesis IV (anaerobic)
AMJ96_CH02544	PWY-7858	AMJ96_CH02544
AMJ96_CH02544	PWYG-321	mycolate biosynthesis
AMJ96_CH02550	PWY-5443	aminopropanol phosphate biosynthesis I
AMJ96_CH02552	PWY-5194	siroheme biosynthesis
AMJ96_CH02552	PWY-5196	factor 430 biosynthesis
AMJ96_CH02552	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMJ96_CH02559	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMJ96_CH02559	PWY-7962	AMJ96_CH02559
AMJ96_CH02559	PWY-7971	AMJ96_CH02559
AMJ96_CH02559	PWY-7972	AMJ96_CH02559
AMJ96_CH02603	PWY-4202	arsenate detoxification I (glutaredoxin)
AMJ96_CH02603	PWY-4621	arsenate detoxification II (glutaredoxin)
AMJ96_CH02625	PWY-7942	AMJ96_CH02625
AMJ96_CH02633	PWY-7644	heparin degradation
AMJ96_CH02669	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH02669	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH02680	PWY-7644	heparin degradation
AMJ96_CH02747	PWY-4983	L-citrulline-nitric oxide cycle
AMJ96_CH02747	PWY-4984	urea cycle
AMJ96_CH02747	PWY-5	canavanine biosynthesis
AMJ96_CH02747	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH02747	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH02750	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH02776	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH02776	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_CH02776	PWY-6692	Fe(II) oxidation
AMJ96_CH02776	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH02798	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH02819	PWY-6807	xyloglucan degradation II (exoglucanase)
AMJ96_CH02848	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH02848	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_CH02866	PWY-7352	daunorubicin biosynthesis
AMJ96_CH02866	PWY-7354	aclacinomycin biosynthesis
AMJ96_CH02895	PWY-5057	L-valine degradation II
AMJ96_CH02895	PWY-5076	L-leucine degradation III
AMJ96_CH02895	PWY-5078	L-isoleucine degradation II
AMJ96_CH02895	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH02895	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH02895	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH02895	PWY-5108	L-isoleucine biosynthesis V
AMJ96_CH02895	PWY-7767	AMJ96_CH02895
AMJ96_CH02904	PWY-2301	<i>myo</i>-inositol biosynthesis
AMJ96_CH02904	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AMJ96_CH02904	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AMJ96_CH02904	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AMJ96_CH02904	PWY-6664	di-myo-inositol phosphate biosynthesis
AMJ96_CH02908	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH02908	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH02911	PWY-4261	glycerol degradation I
AMJ96_CH02927	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH02927	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH02945	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AMJ96_CH02945	PWY-581	indole-3-acetate biosynthesis II
AMJ96_CH02945	PWY-7308	acrylonitrile degradation I
AMJ96_CH02946	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AMJ96_CH02946	PWY-581	indole-3-acetate biosynthesis II
AMJ96_CH02946	PWY-7308	acrylonitrile degradation I
AMJ96_CH02947	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AMJ96_CH02947	PWY-581	indole-3-acetate biosynthesis II
AMJ96_CH02947	PWY-7308	acrylonitrile degradation I
AMJ96_CH02952	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH02952	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH02952	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH02952	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMJ96_CH02952	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMJ96_CH02952	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMJ96_CH02952	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH02953	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH02953	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH02953	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH02953	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMJ96_CH02953	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMJ96_CH02953	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMJ96_CH02953	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH02959	PWY-2781	<i>cis</i>-zeatin biosynthesis
AMJ96_CH02964	PWY-3841	folate transformations II
AMJ96_CH02964	PWY-6614	tetrahydrofolate biosynthesis
AMJ96_CH02965	PWY-3841	folate transformations II
AMJ96_CH02965	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH02965	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH02965	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH02965	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMJ96_CH02965	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH02976	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMJ96_CH03011	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03011	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03011	PWY-7953	AMJ96_CH03011
AMJ96_CH03013	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03013	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03013	PWY-7953	AMJ96_CH03013
AMJ96_CH03014	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03014	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03014	PWY-7953	AMJ96_CH03014
AMJ96_CH03015	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH03015	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH03015	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH03015	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH03016	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH03016	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH03016	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH03016	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH03017	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03017	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03018	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH03018	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH03018	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH03019	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03019	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03019	PWY-7953	AMJ96_CH03019
AMJ96_CH03031	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH03031	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH03031	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH03031	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMJ96_CH03041	PWY-2201	folate transformations I
AMJ96_CH03041	PWY-3841	folate transformations II
AMJ96_CH03057	PWY-381	nitrate reduction II (assimilatory)
AMJ96_CH03057	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_CH03057	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH03057	PWY-6963	ammonia assimilation cycle I
AMJ96_CH03057	PWY-6964	ammonia assimilation cycle II
AMJ96_CH03074	PWY-2201	folate transformations I
AMJ96_CH03074	PWY-3841	folate transformations II
AMJ96_CH03074	PWY-7977	AMJ96_CH03074
AMJ96_CH03078	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_CH03078	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_CH03090	PWY-6157	autoinducer AI-1 biosynthesis
AMJ96_CH03115	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_CH03116	PWY-7378	aminopropanol phosphate biosynthesis II
AMJ96_CH03122	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH03122	PWY-5686	UMP biosynthesis
AMJ96_CH03122	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH03122	PWY-7790	AMJ96_CH03122
AMJ96_CH03122	PWY-7791	AMJ96_CH03122
AMJ96_CH03130	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH03130	PWY-5686	UMP biosynthesis
AMJ96_CH03130	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH03130	PWY-7790	AMJ96_CH03130
AMJ96_CH03130	PWY-7791	AMJ96_CH03130
AMJ96_CH03173	PWY-3341	L-proline biosynthesis III
AMJ96_CH03173	PWY-4981	L-proline biosynthesis II (from arginine)
AMJ96_CH03173	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMJ96_CH03187	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMJ96_CH03194	PWY-6605	adenine and adenosine salvage II
AMJ96_CH03194	PWY-6610	adenine and adenosine salvage IV
AMJ96_CH03194	PWY-7805	AMJ96_CH03194
AMJ96_CH03194	PWY-7807	AMJ96_CH03194
AMJ96_CH03197	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH03197	PWY-6692	Fe(II) oxidation
AMJ96_CH03197	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AMJ96_CH03197	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH03205	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMJ96_CH03223	PWY-6871	3-methylbutanol biosynthesis
AMJ96_CH03227	PWY-6700	queuosine biosynthesis
AMJ96_CH03231	PWY-5958	acridone alkaloid biosynthesis
AMJ96_CH03231	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMJ96_CH03231	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMJ96_CH03235	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMJ96_CH03235	PWY-2161	folate polyglutamylation
AMJ96_CH03235	PWY-2201	folate transformations I
AMJ96_CH03235	PWY-3841	folate transformations II
AMJ96_CH03241	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMJ96_CH03251	PWY-6610	adenine and adenosine salvage IV
AMJ96_CH03261	PWY-381	nitrate reduction II (assimilatory)
AMJ96_CH03261	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_CH03261	PWY-6549	L-glutamine biosynthesis III
AMJ96_CH03261	PWY-6963	ammonia assimilation cycle I
AMJ96_CH03261	PWY-6964	ammonia assimilation cycle II
AMJ96_CH03270	PWY-7799	AMJ96_CH03270
AMJ96_CH03270	PWY-7800	AMJ96_CH03270
AMJ96_CH03275	PWY-4261	glycerol degradation I
AMJ96_CH03277	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH03277	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMJ96_CH03277	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AMJ96_CH03277	PWY-6596	adenosine nucleotides degradation I
AMJ96_CH03277	PWY-6606	guanosine nucleotides degradation II
AMJ96_CH03277	PWY-6607	guanosine nucleotides degradation I
AMJ96_CH03277	PWY-6608	guanosine nucleotides degradation III
AMJ96_CH03277	PWY-6999	theophylline degradation
AMJ96_CH03278	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH03278	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMJ96_CH03278	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AMJ96_CH03278	PWY-6596	adenosine nucleotides degradation I
AMJ96_CH03278	PWY-6606	guanosine nucleotides degradation II
AMJ96_CH03278	PWY-6607	guanosine nucleotides degradation I
AMJ96_CH03278	PWY-6608	guanosine nucleotides degradation III
AMJ96_CH03278	PWY-6999	theophylline degradation
AMJ96_CH03284	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH03284	PWY-6606	guanosine nucleotides degradation II
AMJ96_CH03284	PWY-6608	guanosine nucleotides degradation III
AMJ96_CH03284	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMJ96_CH03294	PWY-5691	urate degradation to allantoin I
AMJ96_CH03294	PWY-7394	urate degradation to allantoin II
AMJ96_CH03294	PWY-7849	AMJ96_CH03294
AMJ96_CH03295	PWY-5694	allantoin degradation to glyoxylate I
AMJ96_CH03295	PWY-5705	allantoin degradation to glyoxylate III
AMJ96_CH03297	PWY-5691	urate degradation to allantoin I
AMJ96_CH03297	PWY-7394	urate degradation to allantoin II
AMJ96_CH03297	PWY-7849	AMJ96_CH03297
AMJ96_CH03299	PWY-7805	AMJ96_CH03299
AMJ96_CH03299	PWY-7807	AMJ96_CH03299
AMJ96_CH03301	PWY-7892	AMJ96_CH03301
AMJ96_CH03317	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH03317	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH03317	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH03317	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH03381	PWY-7942	AMJ96_CH03381
AMJ96_CH03414	PWY-6717	(1,4)-&beta;-xylan degradation
AMJ96_CH03414	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMJ96_CH03427	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH03427	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH03427	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH03427	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH03439	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AMJ96_CH03439	PWY-7820	AMJ96_CH03439
AMJ96_CH03445	PWY-6749	CMP-legionaminate biosynthesis I
AMJ96_CH03446	PWY-5659	GDP-mannose biosynthesis
AMJ96_CH03446	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AMJ96_CH03477	PWY-2661	trehalose biosynthesis V
AMJ96_CH03503	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMJ96_CH03503	PWY-7927	AMJ96_CH03503
AMJ96_CH03520	PWY-5704	urea degradation II
AMJ96_CH03523	PWY-5704	urea degradation II
AMJ96_CH03525	PWY-5704	urea degradation II
AMJ96_CH03559	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH03562	PWY-5101	L-isoleucine biosynthesis II
AMJ96_CH03562	PWY-5103	L-isoleucine biosynthesis III
AMJ96_CH03562	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_CH03562	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_CH03644	PWY-6123	inosine-5'-phosphate biosynthesis I
AMJ96_CH03644	PWY-6124	inosine-5'-phosphate biosynthesis II
AMJ96_CH03644	PWY-7234	inosine-5'-phosphate biosynthesis III
AMJ96_CH03655	PWY-6610	adenine and adenosine salvage IV
AMJ96_CH03677	PWY-5482	pyruvate fermentation to acetate II
AMJ96_CH03677	PWY-5485	pyruvate fermentation to acetate IV
AMJ96_CH03677	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH03689	PWY-7887	AMJ96_CH03689
AMJ96_CH03689	PWY-7892	AMJ96_CH03689
AMJ96_CH03696	PWY-6749	CMP-legionaminate biosynthesis I
AMJ96_CH03737	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH03737	PWY-5723	Rubisco shunt
AMJ96_CH03737	PWY-6891	thiazole biosynthesis II (Bacillus)
AMJ96_CH03737	PWY-6892	thiazole biosynthesis I (E. coli)
AMJ96_CH03737	PWY-6901	superpathway of glucose and xylose degradation
AMJ96_CH03737	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH03738	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH03738	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH03738	PWY-6901	superpathway of glucose and xylose degradation
AMJ96_CH03738	PWY-7003	glycerol degradation to butanol
AMJ96_CH03742	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH03742	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH03742	PWY-6886	1-butanol autotrophic biosynthesis
AMJ96_CH03742	PWY-6901	superpathway of glucose and xylose degradation
AMJ96_CH03742	PWY-7003	glycerol degradation to butanol
AMJ96_CH03743	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH03743	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH03743	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH03743	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH03743	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMJ96_CH03759	PWY-2301	<i>myo</i>-inositol biosynthesis
AMJ96_CH03759	PWY-4702	phytate degradation I
AMJ96_CH03759	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AMJ96_CH03771	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMJ96_CH03771	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMJ96_CH03771	PWY-6897	thiamin salvage II
AMJ96_CH03771	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMJ96_CH03771	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMJ96_CH03771	PWY-7356	thiamin salvage IV (yeast)
AMJ96_CH03771	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMJ96_CH03776	PWY-6123	inosine-5'-phosphate biosynthesis I
AMJ96_CH03776	PWY-7234	inosine-5'-phosphate biosynthesis III
AMJ96_CH03781	PWY-4041	&gamma;-glutamyl cycle
AMJ96_CH03781	PWY-4061	glutathione-mediated detoxification I
AMJ96_CH03781	PWY-5826	hypoglycin biosynthesis
AMJ96_CH03781	PWY-6842	glutathione-mediated detoxification II
AMJ96_CH03781	PWY-7112	4-hydroxy-2-nonenal detoxification
AMJ96_CH03781	PWY-7559	glutathione degradation (DUG pathway - yeast)
AMJ96_CH03787	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_CH03787	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMJ96_CH03787	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_CH03787	PWY-5723	Rubisco shunt
AMJ96_CH03787	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH03787	PWY-6886	1-butanol autotrophic biosynthesis
AMJ96_CH03787	PWY-6901	superpathway of glucose and xylose degradation
AMJ96_CH03787	PWY-7003	glycerol degradation to butanol
AMJ96_CH03787	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMJ96_CH03787	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_CH03795	PWY-5958	acridone alkaloid biosynthesis
AMJ96_CH03795	PWY-6543	4-aminobenzoate biosynthesis
AMJ96_CH03795	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMJ96_CH03795	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMJ96_CH03806	PWY-3801	sucrose degradation II (sucrose synthase)
AMJ96_CH03806	PWY-6527	stachyose degradation
AMJ96_CH03806	PWY-7238	sucrose biosynthesis II
AMJ96_CH03806	PWY-7343	UDP-glucose biosynthesis
AMJ96_CH03806	PWY-7817	AMJ96_CH03806
AMJ96_CH03840	PWY-5941	glycogen degradation II (eukaryotic)
AMJ96_CH03840	PWY-6731	starch degradation III
AMJ96_CH03840	PWY-6737	starch degradation V
AMJ96_CH03840	PWY-7238	sucrose biosynthesis II
AMJ96_CH03841	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMJ96_CH03841	PWY-622	starch biosynthesis
AMJ96_CH03841	PWY-7900	AMJ96_CH03841
AMJ96_CH03842	PWY-622	starch biosynthesis
AMJ96_CH03842	PWY-7902	AMJ96_CH03842
AMJ96_CH03843	PWY-622	starch biosynthesis
AMJ96_CH03844	PWY-6749	CMP-legionaminate biosynthesis I
AMJ96_CH03848	PWY-3661	glycine betaine degradation I
AMJ96_CH03848	PWY-4722	creatinine degradation II
AMJ96_CH03849	PWY-3661	glycine betaine degradation I
AMJ96_CH03849	PWY-4722	creatinine degradation II
AMJ96_CH03850	PWY-3661	glycine betaine degradation I
AMJ96_CH03850	PWY-4722	creatinine degradation II
AMJ96_CH03851	PWY-3661	glycine betaine degradation I
AMJ96_CH03851	PWY-4722	creatinine degradation II
AMJ96_CH03862	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH03862	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_CH03862	PWY-6692	Fe(II) oxidation
AMJ96_CH03862	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH03873	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_CH03877	PWY-6936	seleno-amino acid biosynthesis
AMJ96_CH03877	PWY-7274	D-cycloserine biosynthesis
AMJ96_CH03877	PWY-7870	AMJ96_CH03877
AMJ96_CH03888	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMJ96_CH03888	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_CH03888	PWY-7242	D-fructuronate degradation
AMJ96_CH03888	PWY-7310	D-glucosaminate degradation
AMJ96_CH03888	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMJ96_CH03893	PWY-3121	linamarin degradation
AMJ96_CH03893	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AMJ96_CH03893	PWY-6002	lotaustralin degradation
AMJ96_CH03893	PWY-6788	cellulose degradation II (fungi)
AMJ96_CH03893	PWY-7091	linustatin bioactivation
AMJ96_CH03893	PWY-7092	neolinustatin bioactivation
AMJ96_CH03893	PWY-7913	AMJ96_CH03893
AMJ96_CH03902	PWY-4261	glycerol degradation I
AMJ96_CH03909	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMJ96_CH03925	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMJ96_CH03925	PWY-5723	Rubisco shunt
AMJ96_CH03932	PWY-4261	glycerol degradation I
AMJ96_CH03934	PWY-6531	mannitol cycle
AMJ96_CH03942	PWY-6902	chitin degradation II
AMJ96_CH03942	PWY-7822	AMJ96_CH03942
AMJ96_CH03942	PWY-7883	AMJ96_CH03942
AMJ96_CH03961	PWY-6807	xyloglucan degradation II (exoglucanase)
AMJ96_CH03967	PWY-6703	preQ<sub>0</sub> biosynthesis
AMJ96_CH03969	PWY-6703	preQ<sub>0</sub> biosynthesis
AMJ96_CH03971	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMJ96_CH03971	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH03971	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH03971	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH03971	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH03971	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH03971	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH03971	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH03972	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMJ96_CH03972	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH03972	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMJ96_CH03972	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMJ96_CH03972	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH03972	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMJ96_CH03972	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMJ96_CH03972	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMJ96_CH03999	PWY-2941	L-lysine biosynthesis II
AMJ96_CH03999	PWY-2942	L-lysine biosynthesis III
AMJ96_CH03999	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH03999	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMJ96_CH03999	PWY-6559	spermidine biosynthesis II
AMJ96_CH03999	PWY-6562	norspermidine biosynthesis
AMJ96_CH03999	PWY-7153	grixazone biosynthesis
AMJ96_CH03999	PWY-7977	AMJ96_CH03999
AMJ96_CH04000	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AMJ96_CH04000	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AMJ96_CH04000	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AMJ96_CH04000	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AMJ96_CH04000	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AMJ96_CH04000	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AMJ96_CH04000	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AMJ96_CH04000	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AMJ96_CH04000	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AMJ96_CH04000	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AMJ96_CH04008	PWY-6502	oxidized GTP and dGTP detoxification
AMJ96_CH04010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH04014	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMJ96_CH04014	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AMJ96_CH04014	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AMJ96_CH04037	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMJ96_CH04037	PWY-5109	2-methylbutanoate biosynthesis
AMJ96_CH04037	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMJ96_CH04037	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMJ96_CH04037	PWY-5177	glutaryl-CoA degradation
AMJ96_CH04037	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH04037	PWY-6435	4-hydroxybenzoate biosynthesis V
AMJ96_CH04037	PWY-6583	pyruvate fermentation to butanol I
AMJ96_CH04037	PWY-6863	pyruvate fermentation to hexanol
AMJ96_CH04037	PWY-6883	pyruvate fermentation to butanol II
AMJ96_CH04037	PWY-6944	androstenedione degradation
AMJ96_CH04037	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMJ96_CH04037	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMJ96_CH04037	PWY-7007	methyl ketone biosynthesis
AMJ96_CH04037	PWY-7046	4-coumarate degradation (anaerobic)
AMJ96_CH04037	PWY-7094	fatty acid salvage
AMJ96_CH04037	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMJ96_CH04037	PWY-735	jasmonic acid biosynthesis
AMJ96_CH04037	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMJ96_CH04037	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMJ96_CH04037	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMJ96_CH04037	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMJ96_CH04037	PWY-7726	AMJ96_CH04037
AMJ96_CH04037	PWY-7778	AMJ96_CH04037
AMJ96_CH04037	PWY-7779	AMJ96_CH04037
AMJ96_CH04039	PWY-4983	L-citrulline-nitric oxide cycle
AMJ96_CH04039	PWY-4984	urea cycle
AMJ96_CH04039	PWY-5	canavanine biosynthesis
AMJ96_CH04039	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH04039	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH04041	PWY-2941	L-lysine biosynthesis II
AMJ96_CH04041	PWY-2942	L-lysine biosynthesis III
AMJ96_CH04041	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH04044	PWY-6599	guanine and guanosine salvage II
AMJ96_CH04044	PWY-6609	adenine and adenosine salvage III
AMJ96_CH04044	PWY-6610	adenine and adenosine salvage IV
AMJ96_CH04044	PWY-6620	guanine and guanosine salvage
AMJ96_CH04050	PWY-7942	AMJ96_CH04050
AMJ96_CH04053	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AMJ96_CH04056	PWY-5386	methylglyoxal degradation I
AMJ96_CH04064	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMJ96_CH04065	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMJ96_CH04069	PWY-6164	3-dehydroquinate biosynthesis I
AMJ96_CH04070	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_CH04073	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_CH04073	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH04073	PWY-5744	glyoxylate assimilation
AMJ96_CH04073	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH04073	PWY-6722	candicidin biosynthesis
AMJ96_CH04086	PWY-7560	methylerythritol phosphate pathway II
AMJ96_CH04093	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMJ96_CH04093	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AMJ96_CH04098	PWY-31	canavanine degradation
AMJ96_CH04098	PWY-4984	urea cycle
AMJ96_CH04098	PWY-6305	putrescine biosynthesis IV
AMJ96_CH04098	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMJ96_CH04099	PWY-3341	L-proline biosynthesis III
AMJ96_CH04099	PWY-4981	L-proline biosynthesis II (from arginine)
AMJ96_CH04099	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMJ96_CH04099	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMJ96_CH04104	PWY-1881	formate oxidation to CO<sub>2</sub>
AMJ96_CH04104	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_CH04104	PWY-6696	oxalate degradation III
AMJ96_CH04104	PWY-7985	AMJ96_CH04104
AMJ96_CH04119	PWY-7980	AMJ96_CH04119
AMJ96_CH04121	PWY-7980	AMJ96_CH04121
AMJ96_CH04131	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMJ96_CH04131	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMJ96_CH04136	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMJ96_CH04138	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMJ96_CH04139	PWY-5392	reductive TCA cycle II
AMJ96_CH04139	PWY-5537	pyruvate fermentation to acetate V
AMJ96_CH04139	PWY-5538	pyruvate fermentation to acetate VI
AMJ96_CH04139	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH04139	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH04139	PWY-6728	methylaspartate cycle
AMJ96_CH04139	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH04139	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_CH04140	PWY-5392	reductive TCA cycle II
AMJ96_CH04140	PWY-5537	pyruvate fermentation to acetate V
AMJ96_CH04140	PWY-5538	pyruvate fermentation to acetate VI
AMJ96_CH04140	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH04140	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH04140	PWY-6728	methylaspartate cycle
AMJ96_CH04140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH04140	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_CH04141	PWY-1622	formaldehyde assimilation I (serine pathway)
AMJ96_CH04141	PWY-5392	reductive TCA cycle II
AMJ96_CH04141	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH04141	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH04141	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_CH04141	PWY-6728	methylaspartate cycle
AMJ96_CH04141	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH04141	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_CH04141	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_CH04144	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH04144	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMJ96_CH04144	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH04144	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH04144	PWY-6728	methylaspartate cycle
AMJ96_CH04144	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH04144	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_CH04144	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH04145	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_CH04145	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMJ96_CH04145	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_CH04145	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_CH04145	PWY-6728	methylaspartate cycle
AMJ96_CH04145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_CH04145	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_CH04145	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_CH04152	PWY-5667	CDP-diacylglycerol biosynthesis I
AMJ96_CH04152	PWY-5981	CDP-diacylglycerol biosynthesis III
AMJ96_CH04152	PWY-7902	AMJ96_CH04152
AMJ96_CH04154	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMJ96_CH04154	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMJ96_CH04155	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMJ96_CH04155	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMJ96_CH04163	PWY-7805	AMJ96_CH04163
AMJ96_CH04163	PWY-7807	AMJ96_CH04163
AMJ96_CH04171	PWY-4983	L-citrulline-nitric oxide cycle
AMJ96_CH04171	PWY-4984	urea cycle
AMJ96_CH04171	PWY-5	canavanine biosynthesis
AMJ96_CH04171	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH04171	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH04180	PWY-7511	protein ubiquitylation
AMJ96_CH04181	PWY-7158	L-phenylalanine degradation V
AMJ96_CH04202	PWY-2941	L-lysine biosynthesis II
AMJ96_CH04202	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH04205	PWY-3461	L-tyrosine biosynthesis II
AMJ96_CH04205	PWY-3462	L-phenylalanine biosynthesis II
AMJ96_CH04205	PWY-6120	L-tyrosine biosynthesis III
AMJ96_CH04205	PWY-6627	salinosporamide A biosynthesis
AMJ96_CH04205	PWY-7626	bacilysin biosynthesis
AMJ96_CH04208	PWY-6829	tRNA methylation (yeast)
AMJ96_CH04208	PWY-7285	methylwyosine biosynthesis
AMJ96_CH04208	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AMJ96_CH04232	PWY-3821	galactose degradation III
AMJ96_CH04232	PWY-6317	galactose degradation I (Leloir pathway)
AMJ96_CH04232	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMJ96_CH04232	PWY-6527	stachyose degradation
AMJ96_CH04232	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMJ96_CH04232	PWY-7344	UDP-D-galactose biosynthesis
AMJ96_CH04238	PWY-7533	gliotoxin biosynthesis
AMJ96_CH04251	PWY-5750	itaconate biosynthesis
AMJ96_CH04251	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH04251	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AMJ96_CH04262	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_CH04262	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_CH04262	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_CH04262	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_CH04269	PWY-5676	acetyl-CoA fermentation to butanoate II
AMJ96_CH04269	PWY-5741	ethylmalonyl-CoA pathway
AMJ96_CH04269	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMJ96_CH04269	PWY-7948	AMJ96_CH04269
AMJ96_CH04281	PWY-6898	thiamin salvage III
AMJ96_CH04281	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMJ96_CH04281	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMJ96_CH04281	PWY-7356	thiamin salvage IV (yeast)
AMJ96_CH04285	PWY-6317	galactose degradation I (Leloir pathway)
AMJ96_CH04288	PWY-6906	chitin derivatives degradation
AMJ96_CH04288	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AMJ96_CH04288	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AMJ96_CH04323	PWY-3341	L-proline biosynthesis III
AMJ96_CH04323	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMJ96_CH04324	PWY-3341	L-proline biosynthesis III
AMJ96_CH04324	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMJ96_CH04325	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_CH04325	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMJ96_CH04325	PWY-7761	AMJ96_CH04325
AMJ96_CH04348	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMJ96_CH04354	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMJ96_CH04354	PWY-5491	diethylphosphate degradation
AMJ96_CH04355	PWY-2941	L-lysine biosynthesis II
AMJ96_CH04355	PWY-2942	L-lysine biosynthesis III
AMJ96_CH04355	PWY-5097	L-lysine biosynthesis VI
AMJ96_CH04355	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_CH04355	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AMJ96_CH04355	PWY-6559	spermidine biosynthesis II
AMJ96_CH04355	PWY-6562	norspermidine biosynthesis
AMJ96_CH04355	PWY-7153	grixazone biosynthesis
AMJ96_CH04355	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMJ96_CH04355	PWY-7977	AMJ96_CH04355
AMJ96_CH04358	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_CH04358	PWY-5743	3-hydroxypropanoate cycle
AMJ96_CH04358	PWY-5744	glyoxylate assimilation
AMJ96_CH04358	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_CH04358	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_CH04358	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_CH04358	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_CH04359	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_CH04359	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_CH04361	PWY-5022	4-aminobutanoate degradation V
AMJ96_CH04361	PWY-6728	methylaspartate cycle
AMJ96_CH04361	PWY-7126	ethylene biosynthesis IV
AMJ96_CH04363	PWY-6123	inosine-5'-phosphate biosynthesis I
AMJ96_CH04363	PWY-6124	inosine-5'-phosphate biosynthesis II
AMJ96_CH04363	PWY-7234	inosine-5'-phosphate biosynthesis III
AMJ96_CH04368	PWY-5108	L-isoleucine biosynthesis V
AMJ96_CH04368	PWY-5132	humulone biosynthesis
AMJ96_CH04368	PWY-5133	cohumulone biosynthesis
AMJ96_CH04368	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMJ96_CH04368	PWY-7118	chitin degradation to ethanol
AMJ96_CH04368	PWY-7857	AMJ96_CH04368
AMJ96_CH04371	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_CH04380	PWY-7980	AMJ96_CH04380
AMJ96_CH04382	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMJ96_CH04382	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMJ96_CH04382	PWY-7766	AMJ96_CH04382
AMJ96_PA00018	PWY-7942	AMJ96_PA00018
AMJ96_PA00039	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AMJ96_PA00057	PWY-6807	xyloglucan degradation II (exoglucanase)
AMJ96_PA00064	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_PA00069	PWY-5101	L-isoleucine biosynthesis II
AMJ96_PA00069	PWY-5103	L-isoleucine biosynthesis III
AMJ96_PA00069	PWY-5104	L-isoleucine biosynthesis IV
AMJ96_PA00069	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_PA00082	PWY-4381	fatty acid biosynthesis initiation I
AMJ96_PA00082	PWY-5743	3-hydroxypropanoate cycle
AMJ96_PA00082	PWY-5744	glyoxylate assimilation
AMJ96_PA00082	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_PA00082	PWY-6722	candicidin biosynthesis
AMJ96_PA00088	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMJ96_PA00091	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMJ96_PA00091	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMJ96_PA00118	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMJ96_PA00118	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AMJ96_PA00132	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PA00132	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PA00132	PWY-6692	Fe(II) oxidation
AMJ96_PA00132	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PA00144	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PA00144	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PA00144	PWY-6692	Fe(II) oxidation
AMJ96_PA00144	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PA00147	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMJ96_PA00153	PWY-6523	nitrite-dependent anaerobic methane oxidation
AMJ96_PA00153	PWY-6748	nitrate reduction VII (denitrification)
AMJ96_PA00153	PWY-7084	nitrifier denitrification
AMJ96_PA00183	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMJ96_PA00183	PWY-3602	L-carnitine degradation II
AMJ96_PA00183	PWY-5109	2-methylbutanoate biosynthesis
AMJ96_PA00183	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMJ96_PA00183	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMJ96_PA00183	PWY-5177	glutaryl-CoA degradation
AMJ96_PA00183	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_PA00183	PWY-6435	4-hydroxybenzoate biosynthesis V
AMJ96_PA00183	PWY-6583	pyruvate fermentation to butanol I
AMJ96_PA00183	PWY-6863	pyruvate fermentation to hexanol
AMJ96_PA00183	PWY-6883	pyruvate fermentation to butanol II
AMJ96_PA00183	PWY-6944	androstenedione degradation
AMJ96_PA00183	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMJ96_PA00183	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMJ96_PA00183	PWY-7007	methyl ketone biosynthesis
AMJ96_PA00183	PWY-7046	4-coumarate degradation (anaerobic)
AMJ96_PA00183	PWY-7094	fatty acid salvage
AMJ96_PA00183	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMJ96_PA00183	PWY-735	jasmonic acid biosynthesis
AMJ96_PA00183	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMJ96_PA00183	PWY-7472	D-carnitine degradation II
AMJ96_PA00183	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMJ96_PA00183	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AMJ96_PA00183	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AMJ96_PA00183	PWY-7726	AMJ96_PA00183
AMJ96_PA00183	PWY-7778	AMJ96_PA00183
AMJ96_PA00183	PWY-7779	AMJ96_PA00183
AMJ96_PA00185	PWY-5392	reductive TCA cycle II
AMJ96_PA00185	PWY-5537	pyruvate fermentation to acetate V
AMJ96_PA00185	PWY-5538	pyruvate fermentation to acetate VI
AMJ96_PA00185	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_PA00185	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_PA00185	PWY-6728	methylaspartate cycle
AMJ96_PA00185	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_PA00185	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_PA00202	PWY-5530	sorbitol biosynthesis II
AMJ96_PA00235	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_PA00241	PWY-5940	streptomycin biosynthesis
AMJ96_PA00241	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
AMJ96_PA00241	PWY-7241	<I>myo</I>-inositol degradation II
AMJ96_PA00256	PWY-4041	&gamma;-glutamyl cycle
AMJ96_PA00256	PWY-7942	AMJ96_PA00256
AMJ96_PA00258	PWY-4041	&gamma;-glutamyl cycle
AMJ96_PA00258	PWY-7942	AMJ96_PA00258
AMJ96_PA00287	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMJ96_PB00016	PWY-6700	queuosine biosynthesis
AMJ96_PB00018	PWY-6703	preQ<sub>0</sub> biosynthesis
AMJ96_PB00074	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_PB00074	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_PB00074	PWY-7953	AMJ96_PB00074
AMJ96_PB00075	PWY-2941	L-lysine biosynthesis II
AMJ96_PB00075	PWY-5097	L-lysine biosynthesis VI
AMJ96_PB00101	PWY-7980	AMJ96_PB00101
AMJ96_PB00123	PWY-6752	<i>o</i>-diquinones biosynthesis
AMJ96_PB00167	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PB00169	PWY-6167	flavin biosynthesis II (archaea)
AMJ96_PB00169	PWY-6168	flavin biosynthesis III (fungi)
AMJ96_PB00169	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMJ96_PB00169	PWY-7991	AMJ96_PB00169
AMJ96_PB00172	PWY-1622	formaldehyde assimilation I (serine pathway)
AMJ96_PB00172	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_PB00276	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMJ96_PB00276	PWY-5743	3-hydroxypropanoate cycle
AMJ96_PB00276	PWY-5744	glyoxylate assimilation
AMJ96_PB00276	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMJ96_PB00276	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_PB00276	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_PB00276	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_PB00302	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMJ96_PB00309	PWY-6823	molybdenum cofactor biosynthesis
AMJ96_PB00331	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AMJ96_PB00331	PWY-6174	mevalonate pathway II (archaea)
AMJ96_PB00331	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AMJ96_PB00331	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AMJ96_PB00331	PWY-7102	bisabolene biosynthesis
AMJ96_PB00331	PWY-7391	isoprene biosynthesis II (engineered)
AMJ96_PB00331	PWY-7524	mevalonate pathway III (archaea)
AMJ96_PB00331	PWY-7560	methylerythritol phosphate pathway II
AMJ96_PB00331	PWY-922	mevalonate pathway I
AMJ96_PB00348	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMJ96_PB00377	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PB00377	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PB00377	PWY-6692	Fe(II) oxidation
AMJ96_PB00377	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PB00381	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMJ96_PB00428	PWY-6605	adenine and adenosine salvage II
AMJ96_PB00428	PWY-6610	adenine and adenosine salvage IV
AMJ96_PB00428	PWY-7805	AMJ96_PB00428
AMJ96_PB00428	PWY-7807	AMJ96_PB00428
AMJ96_PC00008	PWY-2661	trehalose biosynthesis V
AMJ96_PC00010	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_PC00010	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_PC00010	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_PC00010	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_PC00031	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PC00031	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PC00031	PWY-6692	Fe(II) oxidation
AMJ96_PC00031	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PC00031	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AMJ96_PC00037	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_PC00037	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_PC00037	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_PC00037	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_PC00039	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMJ96_PC00039	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMJ96_PC00039	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMJ96_PC00039	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMJ96_PC00048	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PC00064	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PC00067	PWY-6041	4-sulfocatechol degradation
AMJ96_PC00068	PWY-6041	4-sulfocatechol degradation
AMJ96_PC00070	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AMJ96_PC00083	PWY-5028	L-histidine degradation II
AMJ96_PC00083	PWY-5030	L-histidine degradation III
AMJ96_PC00086	PWY-5028	L-histidine degradation II
AMJ96_PC00086	PWY-5030	L-histidine degradation III
AMJ96_PC00087	PWY-5028	L-histidine degradation II
AMJ96_PC00087	PWY-5030	L-histidine degradation III
AMJ96_PC00129	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_PC00129	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_PC00211	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMJ96_PC00211	PWY-2361	3-oxoadipate degradation
AMJ96_PC00211	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AMJ96_PC00337	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMJ96_PC00351	PWY-6910	hydroxymethylpyrimidine salvage
AMJ96_PC00351	PWY-7356	thiamin salvage IV (yeast)
AMJ96_PC00351	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMJ96_PC00352	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMJ96_PC00352	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMJ96_PC00352	PWY-6897	thiamin salvage II
AMJ96_PC00352	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMJ96_PC00352	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMJ96_PC00352	PWY-7356	thiamin salvage IV (yeast)
AMJ96_PC00352	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMJ96_PC00353	PWY-6897	thiamin salvage II
AMJ96_PC00353	PWY-7356	thiamin salvage IV (yeast)
AMJ96_PC00353	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMJ96_PC00361	PWY-5692	allantoin degradation to glyoxylate II
AMJ96_PC00361	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AMJ96_PC00368	PWY-5392	reductive TCA cycle II
AMJ96_PC00368	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMJ96_PC00368	PWY-5690	TCA cycle II (plants and fungi)
AMJ96_PC00368	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_PC00368	PWY-6728	methylaspartate cycle
AMJ96_PC00368	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMJ96_PC00368	PWY-7254	TCA cycle VII (acetate-producers)
AMJ96_PC00368	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMJ96_PC00395	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_PC00406	PWY-6902	chitin degradation II
AMJ96_PC00406	PWY-7822	AMJ96_PC00406
AMJ96_PC00406	PWY-7883	AMJ96_PC00406
AMJ96_PC00414	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_PC00414	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMJ96_PC00415	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMJ96_PC00424	PWY-2201	folate transformations I
AMJ96_PC00424	PWY-5497	purine nucleobases degradation II (anaerobic)
AMJ96_PC00424	PWY-7909	AMJ96_PC00424
AMJ96_PC00425	PWY-381	nitrate reduction II (assimilatory)
AMJ96_PC00425	PWY-5675	nitrate reduction V (assimilatory)
AMJ96_PC00425	PWY-6549	L-glutamine biosynthesis III
AMJ96_PC00425	PWY-6963	ammonia assimilation cycle I
AMJ96_PC00425	PWY-6964	ammonia assimilation cycle II
AMJ96_PC00431	PWY-3661	glycine betaine degradation I
AMJ96_PC00431	PWY-4722	creatinine degradation II
AMJ96_PC00432	PWY-3661	glycine betaine degradation I
AMJ96_PC00432	PWY-4722	creatinine degradation II
AMJ96_PC00433	PWY-3661	glycine betaine degradation I
AMJ96_PC00433	PWY-4722	creatinine degradation II
AMJ96_PC00434	PWY-3661	glycine betaine degradation I
AMJ96_PC00434	PWY-4722	creatinine degradation II
AMJ96_PC00448	PWY-5316	nicotine biosynthesis
AMJ96_PC00448	PWY-5381	pyridine nucleotide cycling (plants)
AMJ96_PC00448	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMJ96_PC00448	PWY-7342	superpathway of nicotine biosynthesis
AMJ96_PC00449	PWY-5316	nicotine biosynthesis
AMJ96_PC00449	PWY-7342	superpathway of nicotine biosynthesis
AMJ96_PC00450	PWY-5316	nicotine biosynthesis
AMJ96_PC00450	PWY-7342	superpathway of nicotine biosynthesis
AMJ96_PC00452	PWY-6654	phosphopantothenate biosynthesis III
AMJ96_PC00458	PWY-5194	siroheme biosynthesis
AMJ96_PC00458	PWY-5196	factor 430 biosynthesis
AMJ96_PC00458	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMJ96_PC00459	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMJ96_PC00462	PWY-5194	siroheme biosynthesis
AMJ96_PC00462	PWY-5196	factor 430 biosynthesis
AMJ96_PC00462	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMJ96_PC00464	PWY-6683	sulfate reduction III (assimilatory)
AMJ96_PC00465	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMJ96_PD00003	PWY-6654	phosphopantothenate biosynthesis III
AMJ96_PD00005	PWY-5506	methanol oxidation to formaldehyde IV
AMJ96_PD00011	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_PD00011	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMJ96_PD00026	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PD00028	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMJ96_PD00028	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMJ96_PD00028	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMJ96_PD00043	PWY-1042	glycolysis IV (plant cytosol)
AMJ96_PD00043	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMJ96_PD00043	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMJ96_PD00043	PWY-7003	glycerol degradation to butanol
AMJ96_PD00045	PWY-5532	adenosine nucleotides degradation IV
AMJ96_PD00045	PWY-5723	Rubisco shunt
AMJ96_PD00081	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PD00081	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PD00081	PWY-6692	Fe(II) oxidation
AMJ96_PD00081	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PD00083	PWY-7942	AMJ96_PD00083
AMJ96_PD00124	PWY-7242	D-fructuronate degradation
AMJ96_PD00135	PWY-4261	glycerol degradation I
AMJ96_PD00135	PWY-6118	glycerol-3-phosphate shuttle
AMJ96_PD00135	PWY-6952	glycerophosphodiester degradation
AMJ96_PD00142	PWY-4261	glycerol degradation I
AMJ96_PD00189	PWY-3781	aerobic respiration I (cytochrome c)
AMJ96_PD00189	PWY-4521	arsenite oxidation I (respiratory)
AMJ96_PD00189	PWY-6692	Fe(II) oxidation
AMJ96_PD00189	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMJ96_PD00196	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMJ96_PD00196	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMJ96_PD00196	PWY-6897	thiamin salvage II
AMJ96_PD00196	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMJ96_PD00196	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMJ96_PD00196	PWY-7356	thiamin salvage IV (yeast)
AMJ96_PD00196	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMJ96_PD00197	PWY-6891	thiazole biosynthesis II (Bacillus)
AMJ96_PD00197	PWY-6892	thiazole biosynthesis I (E. coli)
AMJ96_PD00199	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMJ96_PD00199	PWY-7806	AMJ96_PD00199
AMJ96_PD00200	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AMJ96_PD00224	PWY-2301	<i>myo</i>-inositol biosynthesis
AMJ96_PD00224	PWY-4702	phytate degradation I
AMJ96_PD00224	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AMJ96_PD00249	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
AMJ96_PD00278	PWY-7855	AMJ96_PD00278
AMJ96_PD00279	PWY-7855	AMJ96_PD00279
AMJ96_PD00282	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMJ96_PD00282	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMJ96_PD00360	PWY-5941	glycogen degradation II (eukaryotic)
AMJ96_PD00360	PWY-6724	starch degradation II
AMJ96_PD00360	PWY-6737	starch degradation V
AMJ96_PD00360	PWY-7238	sucrose biosynthesis II
AMJ96_PD00361	PWY-2661	trehalose biosynthesis V
AMJ96_PD00370	PWY-5913	TCA cycle VI (obligate autotrophs)
AMJ96_PD00370	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AMJ96_PD00370	PWY-6638	sulfolactate degradation III
AMJ96_PD00370	PWY-6642	(<i>R</i>)-cysteate degradation
AMJ96_PD00370	PWY-6643	coenzyme M biosynthesis II
AMJ96_PD00370	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMJ96_PD00370	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMJ96_PD00370	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_PD00372	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMJ96_PD00372	PWY-622	starch biosynthesis
AMJ96_PD00372	PWY-7900	AMJ96_PD00372
AMJ96_PD00373	PWY-2622	trehalose biosynthesis IV
AMJ96_PD00373	PWY-7900	AMJ96_PD00373
AMJ96_PD00374	PWY-7900	AMJ96_PD00374
AMJ96_PD00401	PWY-6807	xyloglucan degradation II (exoglucanase)
AMJ96_PD00440	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMJ96_PD00442	PWY-5692	allantoin degradation to glyoxylate II
AMJ96_PD00442	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AMJ96_PD00447	PWY-7425	2-chloroacrylate degradation I
AMJ96_PD00473	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AMJ96_PD00473	PWY-6853	ethylene biosynthesis II (microbes)
AMJ96_PD00473	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMJ96_PD00484	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PD00485	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PD00486	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AMJ96_PD00486	PWY-3162	L-tryptophan degradation V (side chain pathway)
AMJ96_PD00486	PWY-5057	L-valine degradation II
AMJ96_PD00486	PWY-5076	L-leucine degradation III
AMJ96_PD00486	PWY-5078	L-isoleucine degradation II
AMJ96_PD00486	PWY-5079	L-phenylalanine degradation III
AMJ96_PD00486	PWY-5082	L-methionine degradation III
AMJ96_PD00486	PWY-5480	pyruvate fermentation to ethanol I
AMJ96_PD00486	PWY-5486	pyruvate fermentation to ethanol II
AMJ96_PD00486	PWY-5751	phenylethanol biosynthesis
AMJ96_PD00486	PWY-6313	serotonin degradation
AMJ96_PD00486	PWY-6333	acetaldehyde biosynthesis I
AMJ96_PD00486	PWY-6342	noradrenaline and adrenaline degradation
AMJ96_PD00486	PWY-6587	pyruvate fermentation to ethanol III
AMJ96_PD00486	PWY-6802	salidroside biosynthesis
AMJ96_PD00486	PWY-6871	3-methylbutanol biosynthesis
AMJ96_PD00486	PWY-7013	L-1,2-propanediol degradation
AMJ96_PD00486	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMJ96_PD00486	PWY-7118	chitin degradation to ethanol
AMJ96_PD00486	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMJ96_PD00486	PWY-7798	AMJ96_PD00486
AMJ96_PD00487	PWY-6046	dimethylsulfoniopropanoate degradation I (cleavage)
AMJ96_PD00487	PWY-6049	superpathway of dimethylsulfoniopropanoate degradation
AMJ96_PD00490	PWY-6046	dimethylsulfoniopropanoate degradation I (cleavage)
AMJ96_PD00490	PWY-6049	superpathway of dimethylsulfoniopropanoate degradation
AMJ96_PD00493	PWY-3341	L-proline biosynthesis III
AMJ96_PD00493	PWY-4981	L-proline biosynthesis II (from arginine)
AMJ96_PD00493	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMJ96_PD00516	PWY-3341	L-proline biosynthesis III
AMJ96_PD00516	PWY-4981	L-proline biosynthesis II (from arginine)
AMJ96_PD00516	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMJ96_PD00522	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMJ96_PD00525	PWY-6157	autoinducer AI-1 biosynthesis
AMJ96_PD00527	PWY-5941	glycogen degradation II (eukaryotic)
AMJ96_PD00540	PWY-6012	acyl carrier protein metabolism I
AMJ96_PD00540	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMJ96_PD00540	PWY-6289	petrobactin biosynthesis
AMJ96_PD00579	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMJ96_PD00626	PWY-2582	brassinosteroid biosynthesis II
AMJ96_PD00626	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMJ96_PD00626	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMJ96_PD00626	PWY-6948	sitosterol degradation to androstenedione
AMJ96_PD00626	PWY-699	brassinosteroid biosynthesis I
AMJ96_PD00626	PWY-7299	progesterone biosynthesis
AMJ96_PD00628	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMJ96_PD00628	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
