AMJ96_CH00001 PF03618 AMJ96_CH00001 AMJ96_CH00002 PF02545 Maf-like protein AMJ96_CH00003 PF01488 Shikimate / quinate 5-dehydrogenase AMJ96_CH00003 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_CH00004 PF01121 Dephospho-CoA kinase AMJ96_CH00005 PF00929 Exonuclease AMJ96_CH00006 PF02556 Preprotein translocase subunit SecB AMJ96_CH00007 PF04186 AMJ96_CH00007 AMJ96_CH00008 PF04280 Tim44-like domain AMJ96_CH00009 PF03562 MltA specific insert domain AMJ96_CH00009 PF06725 3D domain AMJ96_CH00010 PF01713 Smr domain AMJ96_CH00011 PF13560 Helix-turn-helix domain AMJ96_CH00012 PF00204 DNA gyrase B AMJ96_CH00012 PF00986 DNA gyrase B subunit, carboxyl terminus AMJ96_CH00012 PF01751 Toprim domain AMJ96_CH00012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00013 PF00881 Nitroreductase family AMJ96_CH00014 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) AMJ96_CH00015 PF13409 Glutathione S-transferase, N-terminal domain AMJ96_CH00015 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH00016 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH00017 PF06850 AMJ96_CH00017 AMJ96_CH00018 PF11014 AMJ96_CH00018 AMJ96_CH00019 PF01863 Protein of unknown function DUF45 AMJ96_CH00020 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMJ96_CH00021 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH00022 PF00290 Tryptophan synthase alpha chain AMJ96_CH00023 PF01039 Carboxyl transferase domain AMJ96_CH00024 PF08245 Mur ligase middle domain AMJ96_CH00025 PF00085 Thioredoxin AMJ96_CH00026 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH00026 PF12705 PD-(D/E)XK nuclease superfamily AMJ96_CH00026 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH00027 PF12705 PD-(D/E)XK nuclease superfamily AMJ96_CH00028 PF12804 MobA-like NTP transferase domain AMJ96_CH00029 PF01636 Phosphotransferase enzyme family AMJ96_CH00029 PF02367 Uncharacterised P-loop hydrolase UPF0079 AMJ96_CH00030 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00030 PF12860 AMJ96_CH00030 AMJ96_CH00030 PF13188 PAS domain AMJ96_CH00031 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMJ96_CH00031 PF05221 S-adenosyl-L-homocysteine hydrolase AMJ96_CH00032 PF00381 PTS HPr component phosphorylation site AMJ96_CH00033 PF03610 PTS system fructose IIA component AMJ96_CH00034 PF07475 HPr Serine kinase C-terminal domain AMJ96_CH00035 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00035 PF00672 HAMP domain AMJ96_CH00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00035 PF13755 AMJ96_CH00035 AMJ96_CH00035 PF13756 AMJ96_CH00035 AMJ96_CH00036 PF00072 Response regulator receiver domain AMJ96_CH00036 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00037 PF01293 Phosphoenolpyruvate carboxykinase AMJ96_CH00038 PF00472 RF-1 domain AMJ96_CH00039 PF13532 2OG-Fe(II) oxygenase superfamily AMJ96_CH00040 PF00485 Phosphoribulokinase / Uridine kinase family AMJ96_CH00041 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMJ96_CH00042 PF00977 Histidine biosynthesis protein AMJ96_CH00043 PF00977 Histidine biosynthesis protein AMJ96_CH00046 PF00117 Glutamine amidotransferase class-I AMJ96_CH00047 PF10947 AMJ96_CH00047 AMJ96_CH00048 PF00475 Imidazoleglycerol-phosphate dehydratase AMJ96_CH00049 PF00227 Proteasome subunit AMJ96_CH00050 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH00050 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH00050 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH00051 PF07182 AMJ96_CH00051 AMJ96_CH00052 PF00067 Cytochrome P450 AMJ96_CH00053 PF01274 Malate synthase AMJ96_CH00054 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH00055 PF06319 Protein of unknown function (DUF1052) AMJ96_CH00056 PF00072 Response regulator receiver domain AMJ96_CH00056 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH00057 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00058 PF00270 DEAD/DEAH box helicase AMJ96_CH00058 PF00271 Helicase conserved C-terminal domain AMJ96_CH00058 PF04408 Helicase associated domain (HA2) AMJ96_CH00058 PF08482 AMJ96_CH00058 AMJ96_CH00059 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_CH00067 PF13086 AAA domain AMJ96_CH00067 PF13087 AAA domain AMJ96_CH00068 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00070 PF16363 AMJ96_CH00070 AMJ96_CH00071 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00072 PF13506 Glycosyl transferase family 21 AMJ96_CH00073 PF06191 AMJ96_CH00073 AMJ96_CH00074 PF02156 Glycosyl hydrolase family 26 AMJ96_CH00075 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH00076 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00076 PF13377 Periplasmic binding protein-like domain AMJ96_CH00077 PF10022 AMJ96_CH00077 AMJ96_CH00078 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH00078 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00079 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00079 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00080 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH00081 PF06187 Protein of unknown function (DUF993) AMJ96_CH00082 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00083 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00084 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH00085 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00086 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00087 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00087 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH00088 PF00005 ABC transporter AMJ96_CH00088 PF08402 TOBE domain AMJ96_CH00089 PF01633 Choline/ethanolamine kinase AMJ96_CH00090 PF01266 FAD dependent oxidoreductase AMJ96_CH00090 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH00090 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH00090 PF16350 AMJ96_CH00090 AMJ96_CH00091 PF01232 Mannitol dehydrogenase Rossmann domain AMJ96_CH00091 PF08125 Mannitol dehydrogenase C-terminal domain AMJ96_CH00092 PF02614 Glucuronate isomerase AMJ96_CH00093 PF04102 SlyX AMJ96_CH00094 PF00171 Aldehyde dehydrogenase family AMJ96_CH00095 PF00202 Aminotransferase class-III AMJ96_CH00096 PF07883 Cupin domain AMJ96_CH00096 PF13411 MerR HTH family regulatory protein AMJ96_CH00096 PF13560 Helix-turn-helix domain AMJ96_CH00097 PF01612 3'-5' exonuclease AMJ96_CH00099 PF00575 S1 RNA binding domain AMJ96_CH00100 PF02224 Cytidylate kinase AMJ96_CH00101 PF09538 AMJ96_CH00101 AMJ96_CH00103 PF11391 AMJ96_CH00103 AMJ96_CH00104 PF06912 AMJ96_CH00104 AMJ96_CH00105 PF02698 DUF218 domain AMJ96_CH00107 PF03458 AMJ96_CH00107 AMJ96_CH00108 PF01475 Ferric uptake regulator family AMJ96_CH00109 PF07977 FabA-like domain AMJ96_CH00110 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH00110 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH00111 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH00112 PF15919 AMJ96_CH00112 AMJ96_CH00113 PF05175 Methyltransferase small domain AMJ96_CH00113 PF08468 Methyltransferase small domain N-terminal AMJ96_CH00114 PF00013 KH domain AMJ96_CH00114 PF00575 S1 RNA binding domain AMJ96_CH00114 PF01138 3' exoribonuclease family, domain 1 AMJ96_CH00114 PF03725 3' exoribonuclease family, domain 2 AMJ96_CH00114 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMJ96_CH00115 PF00312 Ribosomal protein S15 AMJ96_CH00116 PF00561 alpha/beta hydrolase fold AMJ96_CH00117 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMJ96_CH00117 PF09157 Pseudouridine synthase II TruB, C-terminal AMJ96_CH00117 PF16198 AMJ96_CH00117 AMJ96_CH00118 PF02033 Ribosome-binding factor A AMJ96_CH00119 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00119 PF04760 Translation initiation factor IF-2, N-terminal region AMJ96_CH00119 PF08364 AMJ96_CH00119 AMJ96_CH00119 PF11987 Translation-initiation factor 2 AMJ96_CH00120 PF04296 Protein of unknown function (DUF448) AMJ96_CH00121 PF00575 S1 RNA binding domain AMJ96_CH00121 PF08529 NusA N-terminal domain AMJ96_CH00121 PF13184 NusA-like KH domain AMJ96_CH00121 PF14520 Helix-hairpin-helix domain AMJ96_CH00122 PF02576 Uncharacterised BCR, YhbC family COG0779 AMJ96_CH00122 PF17384 AMJ96_CH00122 AMJ96_CH00124 PF05977 Transmembrane secretion effector AMJ96_CH00125 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00126 PF01471 Putative peptidoglycan binding domain AMJ96_CH00126 PF13406 Transglycosylase SLT domain AMJ96_CH00127 PF02132 RecR protein AMJ96_CH00127 PF13662 Toprim domain AMJ96_CH00128 PF03473 MOSC domain AMJ96_CH00129 PF02575 YbaB/EbfC DNA-binding family AMJ96_CH00130 PF12169 DNA polymerase III subunits gamma and tau domain III AMJ96_CH00130 PF12362 AMJ96_CH00130 AMJ96_CH00130 PF13177 DNA polymerase III, delta subunit AMJ96_CH00132 PF01230 HIT domain AMJ96_CH00133 PF00293 NUDIX domain AMJ96_CH00133 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMJ96_CH00133 PF09297 NADH pyrophosphatase zinc ribbon domain AMJ96_CH00134 PF08279 HTH domain AMJ96_CH00134 PF13280 AMJ96_CH00134 AMJ96_CH00136 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00137 PF00800 Prephenate dehydratase AMJ96_CH00138 PF02348 Cytidylyltransferase AMJ96_CH00139 PF00034 Cytochrome c AMJ96_CH00140 PF03547 AMJ96_CH00140 AMJ96_CH00141 PF00294 pfkB family carbohydrate kinase AMJ96_CH00142 PF06347 Bacterial SH3 domain AMJ96_CH00143 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH00143 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00144 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00145 PF00899 ThiF family AMJ96_CH00146 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH00147 PF12844 Helix-turn-helix domain AMJ96_CH00149 PF00226 DnaJ domain AMJ96_CH00149 PF00684 DnaJ central domain AMJ96_CH00149 PF01556 DnaJ C terminal domain AMJ96_CH00150 PF00012 Hsp70 protein AMJ96_CH00151 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH00151 PF00912 Transglycosylase AMJ96_CH00153 PF08239 Bacterial SH3 domain AMJ96_CH00154 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00154 PF07687 Peptidase dimerisation domain AMJ96_CH00155 PF00563 EAL domain AMJ96_CH00155 PF00990 GGDEF domain AMJ96_CH00155 PF03707 AMJ96_CH00155 AMJ96_CH00155 PF13188 PAS domain AMJ96_CH00156 PF01047 MarR family AMJ96_CH00158 PF00476 DNA polymerase family A AMJ96_CH00158 PF01367 5'-3' exonuclease, C-terminal SAM fold AMJ96_CH00158 PF01612 3'-5' exonuclease AMJ96_CH00158 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMJ96_CH00159 PF01580 FtsK/SpoIIIE family AMJ96_CH00159 PF09397 Ftsk gamma domain AMJ96_CH00160 PF04229 GrpB protein AMJ96_CH00161 PF13238 AAA domain AMJ96_CH00162 PF07969 Amidohydrolase family AMJ96_CH00163 PF06299 AMJ96_CH00163 AMJ96_CH00164 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00165 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00166 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMJ96_CH00167 PF00005 ABC transporter AMJ96_CH00168 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH00169 PF00005 ABC transporter AMJ96_CH00170 PF00005 ABC transporter AMJ96_CH00171 PF06007 AMJ96_CH00171 AMJ96_CH00172 PF05861 AMJ96_CH00172 AMJ96_CH00173 PF05845 Bacterial phosphonate metabolism protein (PhnH) AMJ96_CH00174 PF06754 AMJ96_CH00174 AMJ96_CH00175 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00175 PF07702 UTRA domain AMJ96_CH00176 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00177 PF01113 Dihydrodipicolinate reductase, N-terminus AMJ96_CH00177 PF05173 Dihydrodipicolinate reductase, C-terminus AMJ96_CH00178 PF00005 ABC transporter AMJ96_CH00178 PF00664 ABC transporter transmembrane region AMJ96_CH00179 PF02685 Glucokinase AMJ96_CH00180 PF02142 MGS-like domain AMJ96_CH00181 PF03411 Penicillin-insensitive murein endopeptidase AMJ96_CH00182 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00183 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00184 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00185 PF00005 ABC transporter AMJ96_CH00185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00186 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH00188 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMJ96_CH00190 PF13619 AMJ96_CH00190 AMJ96_CH00193 PF02608 Basic membrane protein AMJ96_CH00194 PF00005 ABC transporter AMJ96_CH00195 PF02653 AMJ96_CH00195 AMJ96_CH00196 PF02653 AMJ96_CH00196 AMJ96_CH00197 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJ96_CH00198 PF01048 Phosphorylase superfamily AMJ96_CH00199 PF01791 DeoC/LacD family aldolase AMJ96_CH00200 PF00591 Glycosyl transferase family, a/b domain AMJ96_CH00200 PF02885 Glycosyl transferase family, helical bundle domain AMJ96_CH00200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMJ96_CH00201 PF13975 AMJ96_CH00201 AMJ96_CH00202 PF14681 Uracil phosphoribosyltransferase AMJ96_CH00203 PF00962 Adenosine/AMP deaminase AMJ96_CH00204 PF01676 Metalloenzyme superfamily AMJ96_CH00205 PF07811 AMJ96_CH00205 AMJ96_CH00206 PF07811 AMJ96_CH00206 AMJ96_CH00207 PF13629 AMJ96_CH00207 AMJ96_CH00208 PF04964 AMJ96_CH00208 AMJ96_CH00209 PF01478 Type IV leader peptidase family AMJ96_CH00210 PF08666 SAF domain AMJ96_CH00210 PF16976 AMJ96_CH00210 AMJ96_CH00211 PF00263 AMJ96_CH00211 AMJ96_CH00211 PF04972 BON domain AMJ96_CH00211 PF13629 AMJ96_CH00211 AMJ96_CH00212 PF09476 AMJ96_CH00212 AMJ96_CH00214 PF00437 Type II/IV secretion system protein AMJ96_CH00215 PF00482 Type II secretion system (T2SS), protein F AMJ96_CH00216 PF00482 Type II secretion system (T2SS), protein F AMJ96_CH00217 PF01810 AMJ96_CH00217 AMJ96_CH00218 PF07721 Tetratricopeptide repeat AMJ96_CH00219 PF00883 Cytosol aminopeptidase family, catalytic domain AMJ96_CH00220 PF12802 MarR family AMJ96_CH00221 PF00877 NlpC/P60 family AMJ96_CH00222 PF01425 Amidase AMJ96_CH00223 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00224 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00226 PF03576 Peptidase family S58 AMJ96_CH00228 PF00202 Aminotransferase class-III AMJ96_CH00228 PF01636 Phosphotransferase enzyme family AMJ96_CH00229 PF00551 Formyl transferase AMJ96_CH00230 PF01757 AMJ96_CH00230 AMJ96_CH00232 PF00150 Cellulase (glycosyl hydrolase family 5) AMJ96_CH00233 PF13807 AMJ96_CH00233 AMJ96_CH00235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH00236 PF00535 Glycosyl transferase family 2 AMJ96_CH00237 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMJ96_CH00238 PF08421 Putative zinc binding domain AMJ96_CH00238 PF08484 C-methyltransferase C-terminal domain AMJ96_CH00238 PF13489 Methyltransferase domain AMJ96_CH00239 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00240 PF00483 Nucleotidyl transferase AMJ96_CH00241 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH00242 PF03102 NeuB family AMJ96_CH00242 PF08666 SAF domain AMJ96_CH00243 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH00243 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH00243 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH00244 PF07977 FabA-like domain AMJ96_CH00245 PF00550 Phosphopantetheine attachment site AMJ96_CH00246 PF05893 Acyl-CoA reductase (LuxC) AMJ96_CH00247 PF04443 AMJ96_CH00247 AMJ96_CH00248 PF00501 AMP-binding enzyme AMJ96_CH00249 PF06169 Protein of unknown function (DUF982) AMJ96_CH00251 PF07886 AMJ96_CH00251 AMJ96_CH00252 PF10262 Rdx family AMJ96_CH00253 PF00117 Glutamine amidotransferase class-I AMJ96_CH00254 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH00254 PF12464 Maltose acetyltransferase AMJ96_CH00255 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH00256 PF01845 CcdB protein AMJ96_CH00257 PF07362 Post-segregation antitoxin CcdA AMJ96_CH00258 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00258 PF00679 Elongation factor G C-terminus AMJ96_CH00258 PF03144 Elongation factor Tu domain 2 AMJ96_CH00258 PF06421 GTP-binding protein LepA C-terminus AMJ96_CH00259 PF03070 TENA/THI-4/PQQC family AMJ96_CH00260 PF01381 Helix-turn-helix AMJ96_CH00260 PF07883 Cupin domain AMJ96_CH00261 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00262 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH00263 PF00850 Histone deacetylase domain AMJ96_CH00264 PF02631 RecX family AMJ96_CH00265 PF00892 EamA-like transporter family AMJ96_CH00267 PF02915 Rubrerythrin AMJ96_CH00268 PF05598 AMJ96_CH00268 AMJ96_CH00268 PF13751 AMJ96_CH00268 AMJ96_CH00269 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AMJ96_CH00270 PF12697 Alpha/beta hydrolase family AMJ96_CH00271 PF00707 Translation initiation factor IF-3, C-terminal domain AMJ96_CH00271 PF05198 Translation initiation factor IF-3, N-terminal domain AMJ96_CH00273 PF01632 Ribosomal protein L35 AMJ96_CH00274 PF00453 Ribosomal protein L20 AMJ96_CH00275 PF01409 tRNA synthetases class II core domain (F) AMJ96_CH00275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMJ96_CH00276 PF01588 Putative tRNA binding domain AMJ96_CH00276 PF03147 Ferredoxin-fold anticodon binding domain AMJ96_CH00276 PF03483 B3/4 domain AMJ96_CH00276 PF03484 tRNA synthetase B5 domain AMJ96_CH00277 PF12893 Putative lumazine-binding AMJ96_CH00278 PF00248 Aldo/keto reductase family AMJ96_CH00279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00279 PF03466 LysR substrate binding domain AMJ96_CH00280 PF05974 Domain of unknown function (DUF892) AMJ96_CH00282 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00283 PF00248 Aldo/keto reductase family AMJ96_CH00284 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH00285 PF04138 AMJ96_CH00285 AMJ96_CH00286 PF00535 Glycosyl transferase family 2 AMJ96_CH00289 PF02601 AMJ96_CH00289 AMJ96_CH00289 PF13742 AMJ96_CH00289 AMJ96_CH00290 PF02525 Flavodoxin-like fold AMJ96_CH00291 PF01047 MarR family AMJ96_CH00292 PF00892 EamA-like transporter family AMJ96_CH00293 PF02073 Thermophilic metalloprotease (M29) AMJ96_CH00294 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH00294 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH00295 PF12802 MarR family AMJ96_CH00296 PF04073 Aminoacyl-tRNA editing domain AMJ96_CH00297 PF03960 ArsC family AMJ96_CH00298 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMJ96_CH00299 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH00300 PF00106 short chain dehydrogenase AMJ96_CH00301 PF00106 short chain dehydrogenase AMJ96_CH00302 PF11512 Agrobacterium tumefaciens protein Atu4866 AMJ96_CH00303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00303 PF03466 LysR substrate binding domain AMJ96_CH00304 PF12833 Helix-turn-helix domain AMJ96_CH00305 PF01161 Phosphatidylethanolamine-binding protein AMJ96_CH00306 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH00307 PF01872 RibD C-terminal domain AMJ96_CH00309 PF08279 HTH domain AMJ96_CH00309 PF13280 AMJ96_CH00309 AMJ96_CH00310 PF00117 Glutamine amidotransferase class-I AMJ96_CH00310 PF00958 GMP synthase C terminal domain AMJ96_CH00310 PF03054 tRNA methyl transferase AMJ96_CH00311 PF01048 Phosphorylase superfamily AMJ96_CH00312 PF03061 Thioesterase superfamily AMJ96_CH00313 PF10009 AMJ96_CH00313 AMJ96_CH00314 PF07433 AMJ96_CH00314 AMJ96_CH00315 PF09375 Imelysin AMJ96_CH00316 PF06537 AMJ96_CH00316 AMJ96_CH00317 PF09375 Imelysin AMJ96_CH00318 PF01189 NOL1/NOP2/sun family AMJ96_CH00319 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMJ96_CH00320 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00321 PF08331 AMJ96_CH00321 AMJ96_CH00321 PF13484 AMJ96_CH00321 AMJ96_CH00322 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH00322 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH00323 PF02673 AMJ96_CH00323 AMJ96_CH00325 PF07704 AMJ96_CH00325 AMJ96_CH00327 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00328 PF07045 Protein of unknown function (DUF1330) AMJ96_CH00329 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMJ96_CH00330 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00331 PF13649 Methyltransferase domain AMJ96_CH00332 PF01904 Protein of unknown function DUF72 AMJ96_CH00333 PF00712 DNA polymerase III beta subunit, N-terminal domain AMJ96_CH00333 PF02767 DNA polymerase III beta subunit, central domain AMJ96_CH00333 PF02768 DNA polymerase III beta subunit, C-terminal domain AMJ96_CH00334 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH00335 PF02021 Uncharacterised protein family UPF0102 AMJ96_CH00336 PF05899 Protein of unknown function (DUF861) AMJ96_CH00337 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMJ96_CH00337 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMJ96_CH00338 PF01078 Magnesium chelatase, subunit ChlI AMJ96_CH00338 PF13335 AMJ96_CH00338 AMJ96_CH00338 PF13541 Subunit ChlI of Mg-chelatase AMJ96_CH00340 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH00341 PF01810 AMJ96_CH00341 AMJ96_CH00342 PF00892 EamA-like transporter family AMJ96_CH00343 PF01037 AsnC family AMJ96_CH00343 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH00345 PF00692 dUTPase AMJ96_CH00346 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH00346 PF03144 Elongation factor Tu domain 2 AMJ96_CH00346 PF16658 AMJ96_CH00346 AMJ96_CH00347 PF13437 HlyD family secretion protein AMJ96_CH00347 PF13533 Biotin-lipoyl like AMJ96_CH00348 PF00005 ABC transporter AMJ96_CH00348 PF00664 ABC transporter transmembrane region AMJ96_CH00350 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH00351 PF00450 Serine carboxypeptidase AMJ96_CH00352 PF07690 Major Facilitator Superfamily AMJ96_CH00353 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00353 PF07729 FCD domain AMJ96_CH00355 PF13230 Glutamine amidotransferases class-II AMJ96_CH00356 PF02441 Flavoprotein AMJ96_CH00356 PF04127 DNA / pantothenate metabolism flavoprotein AMJ96_CH00357 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH00358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00358 PF03466 LysR substrate binding domain AMJ96_CH00359 PF07690 Major Facilitator Superfamily AMJ96_CH00360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00361 PF01175 Urocanase AMJ96_CH00361 PF17391 AMJ96_CH00361 AMJ96_CH00361 PF17392 AMJ96_CH00361 AMJ96_CH00362 PF04993 TfoX N-terminal domain AMJ96_CH00363 PF06032 Protein of unknown function (DUF917) AMJ96_CH00364 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00364 PF07687 Peptidase dimerisation domain AMJ96_CH00365 PF01979 Amidohydrolase family AMJ96_CH00366 PF00221 Aromatic amino acid lyase AMJ96_CH00367 PF03109 AMJ96_CH00367 AMJ96_CH00368 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH00369 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMJ96_CH00369 PF06827 Zinc finger found in FPG and IleRS AMJ96_CH00369 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMJ96_CH00370 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_CH00371 PF01649 Ribosomal protein S20 AMJ96_CH00372 PF00308 Bacterial dnaA protein AMJ96_CH00372 PF08299 Bacterial dnaA protein helix-turn-helix AMJ96_CH00372 PF11638 DnaA N-terminal domain AMJ96_CH00373 PF03435 Saccharopine dehydrogenase AMJ96_CH00373 PF16653 AMJ96_CH00373 AMJ96_CH00374 PF04055 Radical SAM superfamily AMJ96_CH00374 PF06969 HemN C-terminal domain AMJ96_CH00375 PF01725 Ham1 family AMJ96_CH00376 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00377 PF01138 3' exoribonuclease family, domain 1 AMJ96_CH00377 PF03725 3' exoribonuclease family, domain 2 AMJ96_CH00378 PF01628 HrcA protein C terminal domain AMJ96_CH00379 PF01025 GrpE AMJ96_CH00380 PF01156 Inosine-uridine preferring nucleoside hydrolase AMJ96_CH00381 PF00011 Hsp20/alpha crystallin family AMJ96_CH00382 PF06620 AMJ96_CH00382 AMJ96_CH00383 PF04191 Phospholipid methyltransferase AMJ96_CH00384 PF12697 Alpha/beta hydrolase family AMJ96_CH00385 PF10041 AMJ96_CH00385 AMJ96_CH00386 PF02390 Putative methyltransferase AMJ96_CH00387 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMJ96_CH00387 PF02772 S-adenosylmethionine synthetase, central domain AMJ96_CH00387 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMJ96_CH00388 PF05598 AMJ96_CH00388 AMJ96_CH00388 PF13751 AMJ96_CH00388 AMJ96_CH00389 PF01381 Helix-turn-helix AMJ96_CH00390 PF00795 Carbon-nitrogen hydrolase AMJ96_CH00391 PF00571 CBS domain AMJ96_CH00391 PF03471 Transporter associated domain AMJ96_CH00392 PF02130 Uncharacterized protein family UPF0054 AMJ96_CH00393 PF02562 PhoH-like protein AMJ96_CH00394 PF00919 Uncharacterized protein family UPF0004 AMJ96_CH00394 PF01938 TRAM domain AMJ96_CH00394 PF04055 Radical SAM superfamily AMJ96_CH00395 PF01553 Acyltransferase AMJ96_CH00396 PF01475 Ferric uptake regulator family AMJ96_CH00397 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00398 PF00814 Glycoprotease family AMJ96_CH00399 PF01106 NifU-like domain AMJ96_CH00399 PF08712 Scaffold protein Nfu/NifU N terminal AMJ96_CH00400 PF00582 Universal stress protein family AMJ96_CH00401 PF00579 tRNA synthetases class I (W and Y) AMJ96_CH00402 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00403 PF08291 Peptidase M15 AMJ96_CH00404 PF03023 AMJ96_CH00404 AMJ96_CH00405 PF01842 ACT domain AMJ96_CH00405 PF01909 Nucleotidyltransferase domain AMJ96_CH00405 PF01966 HD domain AMJ96_CH00405 PF08335 GlnD PII-uridylyltransferase AMJ96_CH00407 PF00488 MutS domain V AMJ96_CH00407 PF01624 MutS domain I AMJ96_CH00407 PF05188 MutS domain II AMJ96_CH00407 PF05190 MutS family domain IV AMJ96_CH00407 PF05192 MutS domain III AMJ96_CH00408 PF00390 Malic enzyme, N-terminal domain AMJ96_CH00408 PF01515 Phosphate acetyl/butaryl transferase AMJ96_CH00408 PF03949 Malic enzyme, NAD binding domain AMJ96_CH00409 PF13444 Acetyltransferase (GNAT) domain AMJ96_CH00410 PF00072 Response regulator receiver domain AMJ96_CH00410 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00411 PF01252 AMJ96_CH00411 AMJ96_CH00412 PF00588 SpoU rRNA Methylase family AMJ96_CH00412 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMJ96_CH00413 PF10672 S-adenosylmethionine-dependent methyltransferase AMJ96_CH00414 PF00293 NUDIX domain AMJ96_CH00415 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AMJ96_CH00416 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00417 PF06305 AMJ96_CH00417 AMJ96_CH00418 PF00216 Bacterial DNA-binding protein AMJ96_CH00419 PF01343 Peptidase family S49 AMJ96_CH00420 PF06835 Lipopolysaccharide-assembly, LptC-related AMJ96_CH00421 PF03968 OstA-like protein AMJ96_CH00422 PF00005 ABC transporter AMJ96_CH00423 PF00309 AMJ96_CH00423 AMJ96_CH00423 PF04552 Sigma-54, DNA binding domain AMJ96_CH00423 PF04963 Sigma-54 factor, core binding domain AMJ96_CH00424 PF00892 EamA-like transporter family AMJ96_CH00425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMJ96_CH00425 PF16321 AMJ96_CH00425 AMJ96_CH00426 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_CH00427 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00428 PF00294 pfkB family carbohydrate kinase AMJ96_CH00429 PF02646 AMJ96_CH00429 AMJ96_CH00430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00430 PF11563 Protoglobin AMJ96_CH00431 PF01327 Polypeptide deformylase AMJ96_CH00433 PF01850 PIN domain AMJ96_CH00434 PF00551 Formyl transferase AMJ96_CH00434 PF02911 Formyl transferase, C-terminal domain AMJ96_CH00435 PF01416 tRNA pseudouridine synthase AMJ96_CH00437 PF01546 Peptidase family M20/M25/M40 AMJ96_CH00437 PF07687 Peptidase dimerisation domain AMJ96_CH00438 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH00438 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH00438 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMJ96_CH00439 PF03641 Possible lysine decarboxylase AMJ96_CH00440 PF13202 EF hand AMJ96_CH00441 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH00442 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH00442 PF02805 Metal binding domain of Ada AMJ96_CH00442 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMJ96_CH00442 PF12833 Helix-turn-helix domain AMJ96_CH00443 PF13714 Phosphoenolpyruvate phosphomutase AMJ96_CH00444 PF01070 FMN-dependent dehydrogenase AMJ96_CH00445 PF00487 AMJ96_CH00445 AMJ96_CH00446 PF12840 Helix-turn-helix domain AMJ96_CH00447 PF00696 Amino acid kinase family AMJ96_CH00448 PF04542 Sigma-70 region 2 AMJ96_CH00448 PF08281 Sigma-70, region 4 AMJ96_CH00449 PF10099 AMJ96_CH00449 AMJ96_CH00450 PF02469 Fasciclin domain AMJ96_CH00451 PF01926 50S ribosome-binding GTPase AMJ96_CH00452 PF02096 60Kd inner membrane protein AMJ96_CH00452 PF14849 YidC periplasmic domain AMJ96_CH00453 PF00825 Ribonuclease P AMJ96_CH00454 PF00468 Ribosomal protein L34 AMJ96_CH00456 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00456 PF00672 HAMP domain AMJ96_CH00457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00460 PF06169 Protein of unknown function (DUF982) AMJ96_CH00466 PF13649 Methyltransferase domain AMJ96_CH00467 PF00248 Aldo/keto reductase family AMJ96_CH00468 PF05990 Alpha/beta hydrolase of unknown function (DUF900) AMJ96_CH00469 PF01266 FAD dependent oxidoreductase AMJ96_CH00470 PF05544 Proline racemase AMJ96_CH00472 PF04993 TfoX N-terminal domain AMJ96_CH00473 PF12680 SnoaL-like domain AMJ96_CH00474 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00475 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00476 PF07883 Cupin domain AMJ96_CH00477 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMJ96_CH00478 PF00563 EAL domain AMJ96_CH00478 PF00990 GGDEF domain AMJ96_CH00479 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00479 PF13602 Zinc-binding dehydrogenase AMJ96_CH00480 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00481 PF05067 Manganese containing catalase AMJ96_CH00481 PF05974 Domain of unknown function (DUF892) AMJ96_CH00483 PF05025 RbsD / FucU transport protein family AMJ96_CH00484 PF00480 ROK family AMJ96_CH00484 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH00485 PF13407 Periplasmic binding protein domain AMJ96_CH00486 PF02653 AMJ96_CH00486 AMJ96_CH00487 PF00005 ABC transporter AMJ96_CH00488 PF03308 ArgK protein AMJ96_CH00489 PF01979 Amidohydrolase family AMJ96_CH00490 PF00990 GGDEF domain AMJ96_CH00491 PF08592 AMJ96_CH00491 AMJ96_CH00492 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00493 PF00156 Phosphoribosyl transferase domain AMJ96_CH00494 PF00294 pfkB family carbohydrate kinase AMJ96_CH00495 PF00982 Glycosyltransferase family 20 AMJ96_CH00496 PF00342 Phosphoglucose isomerase AMJ96_CH00497 PF00501 AMP-binding enzyme AMJ96_CH00497 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00498 PF05239 PRC-barrel domain AMJ96_CH00499 PF00703 Glycosyl hydrolases family 2 AMJ96_CH00500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00501 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00502 PF00005 ABC transporter AMJ96_CH00503 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00504 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH00506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00506 PF03466 LysR substrate binding domain AMJ96_CH00507 PF03932 CutC family AMJ96_CH00508 PF00107 Zinc-binding dehydrogenase AMJ96_CH00508 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00509 PF02653 AMJ96_CH00509 AMJ96_CH00510 PF00005 ABC transporter AMJ96_CH00511 PF13407 Periplasmic binding protein domain AMJ96_CH00512 PF05025 RbsD / FucU transport protein family AMJ96_CH00513 PF00248 Aldo/keto reductase family AMJ96_CH00514 PF04295 AMJ96_CH00514 AMJ96_CH00514 PF08666 SAF domain AMJ96_CH00515 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00515 PF07729 FCD domain AMJ96_CH00516 PF00005 ABC transporter AMJ96_CH00516 PF06472 AMJ96_CH00516 AMJ96_CH00517 PF07690 Major Facilitator Superfamily AMJ96_CH00519 PF01757 AMJ96_CH00519 AMJ96_CH00521 PF03060 Nitronate monooxygenase AMJ96_CH00523 PF03976 Polyphosphate kinase 2 (PPK2) AMJ96_CH00524 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00525 PF12849 PBP superfamily domain AMJ96_CH00526 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00526 PF12501 AMJ96_CH00526 AMJ96_CH00527 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00527 PF11812 AMJ96_CH00527 AMJ96_CH00528 PF00005 ABC transporter AMJ96_CH00529 PF01895 PhoU domain AMJ96_CH00530 PF00072 Response regulator receiver domain AMJ96_CH00530 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00531 PF07750 AMJ96_CH00531 AMJ96_CH00533 PF00202 Aminotransferase class-III AMJ96_CH00534 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJ96_CH00534 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJ96_CH00535 PF01430 Hsp33 protein AMJ96_CH00536 PF04379 Protein of unknown function (DUF525) AMJ96_CH00537 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH00538 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AMJ96_CH00540 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00541 PF16576 AMJ96_CH00541 AMJ96_CH00542 PF00873 AcrB/AcrD/AcrF family AMJ96_CH00543 PF00106 short chain dehydrogenase AMJ96_CH00545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00546 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00546 PF00672 HAMP domain AMJ96_CH00547 PF01548 AMJ96_CH00547 AMJ96_CH00547 PF02371 AMJ96_CH00547 AMJ96_CH00548 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH00551 PF00717 Peptidase S24-like AMJ96_CH00552 PF00072 Response regulator receiver domain AMJ96_CH00552 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00554 PF06108 Protein of unknown function (DUF952) AMJ96_CH00555 PF01180 Dihydroorotate dehydrogenase AMJ96_CH00556 PF01554 MatE AMJ96_CH00557 PF00188 Cysteine-rich secretory protein family AMJ96_CH00559 PF13489 Methyltransferase domain AMJ96_CH00560 PF02588 AMJ96_CH00560 AMJ96_CH00562 PF02627 Carboxymuconolactone decarboxylase family AMJ96_CH00563 PF02082 Transcriptional regulator AMJ96_CH00564 PF02588 AMJ96_CH00564 AMJ96_CH00565 PF00270 DEAD/DEAH box helicase AMJ96_CH00565 PF00271 Helicase conserved C-terminal domain AMJ96_CH00565 PF08494 AMJ96_CH00565 AMJ96_CH00566 PF00149 Calcineurin-like phosphoesterase AMJ96_CH00567 PF01464 Transglycosylase SLT domain AMJ96_CH00568 PF01872 RibD C-terminal domain AMJ96_CH00569 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00570 PF03795 YCII-related domain AMJ96_CH00571 PF09608 AMJ96_CH00571 AMJ96_CH00572 PF01925 AMJ96_CH00572 AMJ96_CH00573 PF01471 Putative peptidoglycan binding domain AMJ96_CH00573 PF08238 Sel1 repeat AMJ96_CH00574 PF03352 Methyladenine glycosylase AMJ96_CH00575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00575 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH00575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_CH00575 PF12418 AMJ96_CH00575 AMJ96_CH00575 PF12806 AMJ96_CH00575 AMJ96_CH00576 PF00108 Thiolase, N-terminal domain AMJ96_CH00576 PF02803 Thiolase, C-terminal domain AMJ96_CH00577 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_CH00577 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00577 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_CH00578 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH00579 PF12802 MarR family AMJ96_CH00580 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH00581 PF13474 SnoaL-like domain AMJ96_CH00582 PF07690 Major Facilitator Superfamily AMJ96_CH00583 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00583 PF16859 AMJ96_CH00583 AMJ96_CH00584 PF00072 Response regulator receiver domain AMJ96_CH00584 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00584 PF12860 AMJ96_CH00584 AMJ96_CH00585 PF01741 Large-conductance mechanosensitive channel, MscL AMJ96_CH00586 PF00155 Aminotransferase class I and II AMJ96_CH00587 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00588 PF00563 EAL domain AMJ96_CH00588 PF00990 GGDEF domain AMJ96_CH00589 PF16113 AMJ96_CH00589 AMJ96_CH00590 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH00591 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH00591 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH00593 PF04972 BON domain AMJ96_CH00595 PF06169 Protein of unknown function (DUF982) AMJ96_CH00597 PF00589 Phage integrase family AMJ96_CH00599 PF03869 Arc-like DNA binding domain AMJ96_CH00600 PF03869 Arc-like DNA binding domain AMJ96_CH00615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJ96_CH00616 PF11164 AMJ96_CH00616 AMJ96_CH00617 PF00815 Histidinol dehydrogenase AMJ96_CH00618 PF06793 AMJ96_CH00618 AMJ96_CH00619 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJ96_CH00620 PF01176 Translation initiation factor 1A / IF-1 AMJ96_CH00621 PF02545 Maf-like protein AMJ96_CH00622 PF03884 Domain of unknown function (DUF329) AMJ96_CH00625 PF06965 Na+/H+ antiporter 1 AMJ96_CH00626 PF04264 YceI-like domain AMJ96_CH00627 PF00797 N-acetyltransferase AMJ96_CH00628 PF07883 Cupin domain AMJ96_CH00630 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH00630 PF13185 GAF domain AMJ96_CH00631 PF10048 AMJ96_CH00631 AMJ96_CH00632 PF05114 Protein of unknown function (DUF692) AMJ96_CH00633 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) AMJ96_CH00634 PF07681 AMJ96_CH00634 AMJ96_CH00635 PF00107 Zinc-binding dehydrogenase AMJ96_CH00635 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH00636 PF07345 Domain of unknown function (DUF1476) AMJ96_CH00637 PF02040 AMJ96_CH00637 AMJ96_CH00639 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00640 PF01042 Endoribonuclease L-PSP AMJ96_CH00641 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH00642 PF00005 ABC transporter AMJ96_CH00642 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00643 PF00005 ABC transporter AMJ96_CH00643 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00644 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH00645 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00646 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00647 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00648 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00648 PF07729 FCD domain AMJ96_CH00649 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00649 PF13377 Periplasmic binding protein-like domain AMJ96_CH00650 PF13407 Periplasmic binding protein domain AMJ96_CH00651 PF00005 ABC transporter AMJ96_CH00652 PF02653 AMJ96_CH00652 AMJ96_CH00653 PF13229 Right handed beta helix region AMJ96_CH00654 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_CH00655 PF01068 ATP dependent DNA ligase domain AMJ96_CH00655 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH00656 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_CH00657 PF09954 AMJ96_CH00657 AMJ96_CH00659 PF02566 OsmC-like protein AMJ96_CH00660 PF13454 FAD-NAD(P)-binding AMJ96_CH00661 PF00892 EamA-like transporter family AMJ96_CH00662 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00663 PF00072 Response regulator receiver domain AMJ96_CH00663 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00664 PF00072 Response regulator receiver domain AMJ96_CH00665 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00665 PF00989 PAS fold AMJ96_CH00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00666 PF00072 Response regulator receiver domain AMJ96_CH00667 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00668 PF00072 Response regulator receiver domain AMJ96_CH00669 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00669 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00670 PF02355 Protein export membrane protein AMJ96_CH00670 PF07549 SecD/SecF GG Motif AMJ96_CH00672 PF00999 Sodium/hydrogen exchanger family AMJ96_CH00672 PF02254 TrkA-N domain AMJ96_CH00673 PF01381 Helix-turn-helix AMJ96_CH00674 PF13231 AMJ96_CH00674 AMJ96_CH00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00675 PF11563 Protoglobin AMJ96_CH00676 PF13466 STAS domain AMJ96_CH00677 PF00072 Response regulator receiver domain AMJ96_CH00678 PF01584 CheW-like domain AMJ96_CH00678 PF01627 Hpt domain AMJ96_CH00678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00678 PF02895 Signal transducing histidine kinase, homodimeric domain AMJ96_CH00679 PF01584 CheW-like domain AMJ96_CH00680 PF01739 CheR methyltransferase, SAM binding domain AMJ96_CH00680 PF03705 CheR methyltransferase, all-alpha domain AMJ96_CH00681 PF00072 Response regulator receiver domain AMJ96_CH00681 PF01339 CheB methylesterase AMJ96_CH00682 PF00072 Response regulator receiver domain AMJ96_CH00683 PF03975 CheD chemotactic sensory transduction AMJ96_CH00685 PF01514 Secretory protein of YscJ/FliF family AMJ96_CH00685 PF08345 AMJ96_CH00685 AMJ96_CH00686 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00687 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00689 PF01312 FlhB HrpN YscU SpaS Family AMJ96_CH00691 PF01706 FliG C-terminal domain AMJ96_CH00691 PF14841 FliG middle domain AMJ96_CH00691 PF14842 FliG N-terminal domain AMJ96_CH00692 PF01052 Surface presentation of antigens (SPOA) AMJ96_CH00693 PF01052 Surface presentation of antigens (SPOA) AMJ96_CH00694 PF01618 AMJ96_CH00694 AMJ96_CH00695 PF00460 Flagella basal body rod protein AMJ96_CH00695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00696 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH00699 PF00460 Flagella basal body rod protein AMJ96_CH00699 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00700 PF02049 AMJ96_CH00700 AMJ96_CH00701 PF00460 Flagella basal body rod protein AMJ96_CH00701 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00702 PF13144 SAF-like AMJ96_CH00703 PF02119 AMJ96_CH00703 AMJ96_CH00705 PF02107 AMJ96_CH00705 AMJ96_CH00706 PF03748 AMJ96_CH00706 AMJ96_CH00707 PF00813 AMJ96_CH00707 AMJ96_CH00708 PF06821 Serine hydrolase AMJ96_CH00709 PF01037 AsnC family AMJ96_CH00709 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH00710 PF13844 Glycosyl transferase family 41 AMJ96_CH00711 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00711 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00712 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00712 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00713 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00713 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00714 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00714 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00716 PF00691 OmpA family AMJ96_CH00716 PF13677 AMJ96_CH00716 AMJ96_CH00718 PF02120 Flagellar hook-length control protein FliK AMJ96_CH00719 PF01464 Transglycosylase SLT domain AMJ96_CH00720 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH00721 PF00460 Flagella basal body rod protein AMJ96_CH00721 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00721 PF07559 Flagellar basal body protein FlaE AMJ96_CH00722 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH00723 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH00723 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH00724 PF07309 AMJ96_CH00724 AMJ96_CH00725 PF07378 AMJ96_CH00725 AMJ96_CH00726 PF03963 AMJ96_CH00726 AMJ96_CH00727 PF01313 AMJ96_CH00727 AMJ96_CH00728 PF00771 FHIPEP family AMJ96_CH00729 PF01311 AMJ96_CH00729 AMJ96_CH00731 PF10135 AMJ96_CH00731 AMJ96_CH00734 PF03808 AMJ96_CH00734 AMJ96_CH00736 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMJ96_CH00736 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMJ96_CH00737 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH00737 PF13377 Periplasmic binding protein-like domain AMJ96_CH00738 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH00739 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00740 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00741 PF00128 Alpha amylase, catalytic domain AMJ96_CH00742 PF00005 ABC transporter AMJ96_CH00742 PF08402 TOBE domain AMJ96_CH00744 PF00920 Dehydratase family AMJ96_CH00745 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMJ96_CH00746 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMJ96_CH00746 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMJ96_CH00747 PF01266 FAD dependent oxidoreductase AMJ96_CH00748 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH00749 PF03486 HI0933-like protein AMJ96_CH00751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00751 PF00672 HAMP domain AMJ96_CH00752 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00752 PF17201 AMJ96_CH00752 AMJ96_CH00754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00756 PF00463 Isocitrate lyase family AMJ96_CH00757 PF01381 Helix-turn-helix AMJ96_CH00757 PF06114 Domain of unknown function (DUF955) AMJ96_CH00757 PF09856 AMJ96_CH00757 AMJ96_CH00758 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH00759 PF00005 ABC transporter AMJ96_CH00759 PF08402 TOBE domain AMJ96_CH00760 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00761 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00762 PF05170 AMJ96_CH00762 AMJ96_CH00762 PF13502 AMJ96_CH00762 AMJ96_CH00763 PF00501 AMP-binding enzyme AMJ96_CH00763 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00765 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH00765 PF00989 PAS fold AMJ96_CH00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00765 PF13188 PAS domain AMJ96_CH00766 PF09361 AMJ96_CH00766 AMJ96_CH00768 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMJ96_CH00768 PF08548 Peptidase M10 serralysin C terminal AMJ96_CH00769 PF13778 AMJ96_CH00769 AMJ96_CH00771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00771 PF03466 LysR substrate binding domain AMJ96_CH00772 PF03992 Antibiotic biosynthesis monooxygenase AMJ96_CH00773 PF00171 Aldehyde dehydrogenase family AMJ96_CH00774 PF02082 Transcriptional regulator AMJ96_CH00775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH00776 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00777 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH00777 PF12911 AMJ96_CH00777 AMJ96_CH00778 PF00005 ABC transporter AMJ96_CH00778 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00779 PF00005 ABC transporter AMJ96_CH00779 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH00780 PF01202 Shikimate kinase AMJ96_CH00781 PF01266 FAD dependent oxidoreductase AMJ96_CH00782 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMJ96_CH00783 PF00195 Chalcone and stilbene synthases, N-terminal domain AMJ96_CH00783 PF02797 Chalcone and stilbene synthases, C-terminal domain AMJ96_CH00784 PF13432 Tetratricopeptide repeat AMJ96_CH00785 PF04542 Sigma-70 region 2 AMJ96_CH00785 PF08281 Sigma-70, region 4 AMJ96_CH00787 PF00535 Glycosyl transferase family 2 AMJ96_CH00788 PF00483 Nucleotidyl transferase AMJ96_CH00789 PF05523 WxcM-like, C-terminal AMJ96_CH00790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH00791 PF01061 AMJ96_CH00791 AMJ96_CH00792 PF00005 ABC transporter AMJ96_CH00792 PF14524 Wzt C-terminal domain AMJ96_CH00793 PF16363 AMJ96_CH00793 AMJ96_CH00794 PF00483 Nucleotidyl transferase AMJ96_CH00795 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00796 PF04055 Radical SAM superfamily AMJ96_CH00796 PF13186 Iron-sulfur cluster-binding domain AMJ96_CH00797 PF03102 NeuB family AMJ96_CH00797 PF08666 SAF domain AMJ96_CH00798 PF02348 Cytidylyltransferase AMJ96_CH00800 PF08889 AMJ96_CH00800 AMJ96_CH00801 PF02585 GlcNAc-PI de-N-acetylase AMJ96_CH00804 PF00535 Glycosyl transferase family 2 AMJ96_CH00804 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH00805 PF13524 Glycosyl transferases group 1 AMJ96_CH00806 PF08241 Methyltransferase domain AMJ96_CH00808 PF16363 AMJ96_CH00808 AMJ96_CH00809 PF16363 AMJ96_CH00809 AMJ96_CH00810 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH00811 PF00891 O-methyltransferase AMJ96_CH00811 PF16864 AMJ96_CH00811 AMJ96_CH00813 PF02541 Ppx/GppA phosphatase family AMJ96_CH00814 PF01728 FtsJ-like methyltransferase AMJ96_CH00816 PF07690 Major Facilitator Superfamily AMJ96_CH00817 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH00818 PF00478 IMP dehydrogenase / GMP reductase domain AMJ96_CH00818 PF00571 CBS domain AMJ96_CH00820 PF01124 MAPEG family AMJ96_CH00821 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH00822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00822 PF03466 LysR substrate binding domain AMJ96_CH00823 PF06568 AMJ96_CH00823 AMJ96_CH00824 PF06078 Bacterial protein of unknown function (DUF937) AMJ96_CH00825 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMJ96_CH00826 PF04452 RNA methyltransferase AMJ96_CH00827 PF01384 AMJ96_CH00827 AMJ96_CH00828 PF00293 NUDIX domain AMJ96_CH00829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00829 PF03466 LysR substrate binding domain AMJ96_CH00830 PF01565 FAD binding domain AMJ96_CH00830 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH00831 PF01565 FAD binding domain AMJ96_CH00831 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH00832 PF02754 AMJ96_CH00832 AMJ96_CH00832 PF12838 4Fe-4S dicluster domain AMJ96_CH00834 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH00835 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH00836 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH00837 PF03352 Methyladenine glycosylase AMJ96_CH00839 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH00840 PF00248 Aldo/keto reductase family AMJ96_CH00841 PF03713 Domain of unknown function (DUF305) AMJ96_CH00844 PF03129 Anticodon binding domain AMJ96_CH00844 PF13393 Histidyl-tRNA synthetase AMJ96_CH00845 PF13393 Histidyl-tRNA synthetase AMJ96_CH00846 PF01634 ATP phosphoribosyltransferase AMJ96_CH00847 PF07681 AMJ96_CH00847 AMJ96_CH00848 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH00848 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH00850 PF00118 TCP-1/cpn60 chaperonin family AMJ96_CH00851 PF00166 Chaperonin 10 Kd subunit AMJ96_CH00852 PF13242 HAD-hyrolase-like AMJ96_CH00852 PF13344 Haloacid dehalogenase-like hydrolase AMJ96_CH00853 PF01687 Riboflavin kinase AMJ96_CH00853 PF06574 FAD synthetase AMJ96_CH00854 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH00854 PF08264 Anticodon-binding domain of tRNA AMJ96_CH00856 PF14437 AMJ96_CH00856 AMJ96_CH00857 PF00849 RNA pseudouridylate synthase AMJ96_CH00857 PF01479 S4 domain AMJ96_CH00858 PF03602 Conserved hypothetical protein 95 AMJ96_CH00859 PF01734 Patatin-like phospholipase AMJ96_CH00860 PF01878 EVE domain AMJ96_CH00861 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH00862 PF00999 Sodium/hydrogen exchanger family AMJ96_CH00862 PF02254 TrkA-N domain AMJ96_CH00863 PF01523 Putative modulator of DNA gyrase AMJ96_CH00864 PF00459 Inositol monophosphatase family AMJ96_CH00865 PF13773 Domain of unknown function (DUF4170) AMJ96_CH00866 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMJ96_CH00867 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH00868 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMJ96_CH00869 PF09866 AMJ96_CH00869 AMJ96_CH00870 PF01119 DNA mismatch repair protein, C-terminal domain AMJ96_CH00870 PF08676 MutL C terminal dimerisation domain AMJ96_CH00870 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH00871 PF00072 Response regulator receiver domain AMJ96_CH00871 PF08448 PAS fold AMJ96_CH00871 PF12860 AMJ96_CH00871 AMJ96_CH00872 PF00563 EAL domain AMJ96_CH00872 PF00990 GGDEF domain AMJ96_CH00873 PF05239 PRC-barrel domain AMJ96_CH00874 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_CH00875 PF01081 KDPG and KHG aldolase AMJ96_CH00876 PF05035 2-keto-3-deoxy-galactonokinase AMJ96_CH00877 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH00878 PF01614 Bacterial transcriptional regulator AMJ96_CH00878 PF09339 IclR helix-turn-helix domain AMJ96_CH00879 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00879 PF03472 Autoinducer binding domain AMJ96_CH00880 PF01883 Domain of unknown function DUF59 AMJ96_CH00880 PF10609 ParA/MinD ATPase like AMJ96_CH00881 PF01544 CorA-like Mg2+ transporter protein AMJ96_CH00882 PF02705 AMJ96_CH00882 AMJ96_CH00883 PF07486 Cell Wall Hydrolase AMJ96_CH00884 PF09527 AMJ96_CH00884 AMJ96_CH00885 PF00119 ATP synthase A chain AMJ96_CH00886 PF00137 ATP synthase subunit C AMJ96_CH00887 PF00430 ATP synthase B/B' CF(0) AMJ96_CH00888 PF00430 ATP synthase B/B' CF(0) AMJ96_CH00889 PF01351 Ribonuclease HII AMJ96_CH00890 PF04055 Radical SAM superfamily AMJ96_CH00893 PF00994 Probable molybdopterin binding domain AMJ96_CH00894 PF00288 GHMP kinases N terminal domain AMJ96_CH00894 PF08544 GHMP kinases C terminal AMJ96_CH00895 PF00515 Tetratricopeptide repeat AMJ96_CH00895 PF13432 Tetratricopeptide repeat AMJ96_CH00895 PF14559 Tetratricopeptide repeat AMJ96_CH00896 PF00348 Polyprenyl synthetase AMJ96_CH00897 PF09413 Domain of unknown function (DUF2007) AMJ96_CH00898 PF05175 Methyltransferase small domain AMJ96_CH00899 PF01566 AMJ96_CH00899 AMJ96_CH00900 PF01343 Peptidase family S49 AMJ96_CH00902 PF02091 Glycyl-tRNA synthetase alpha subunit AMJ96_CH00903 PF13238 AAA domain AMJ96_CH00904 PF04011 LemA family AMJ96_CH00905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJ96_CH00906 PF09972 AMJ96_CH00906 AMJ96_CH00907 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMJ96_CH00907 PF02843 Phosphoribosylglycinamide synthetase, C domain AMJ96_CH00907 PF02844 Phosphoribosylglycinamide synthetase, N domain AMJ96_CH00909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00909 PF17200 AMJ96_CH00909 AMJ96_CH00910 PF04463 AMJ96_CH00910 AMJ96_CH00911 PF02092 AMJ96_CH00911 AMJ96_CH00911 PF05746 DALR anticodon binding domain AMJ96_CH00912 PF00575 S1 RNA binding domain AMJ96_CH00912 PF09371 Tex-like protein N-terminal domain AMJ96_CH00912 PF12836 Helix-hairpin-helix motif AMJ96_CH00912 PF16921 AMJ96_CH00912 AMJ96_CH00913 PF02353 Mycolic acid cyclopropane synthetase AMJ96_CH00914 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00915 PF06629 AMJ96_CH00915 AMJ96_CH00916 PF01040 UbiA prenyltransferase family AMJ96_CH00918 PF06748 Protein of unknown function (DUF1217) AMJ96_CH00919 PF01565 FAD binding domain AMJ96_CH00919 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH00920 PF01300 Telomere recombination AMJ96_CH00920 PF03481 Putative GTP-binding controlling metal-binding AMJ96_CH00922 PF00355 Rieske [2Fe-2S] domain AMJ96_CH00922 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMJ96_CH00923 PF07886 AMJ96_CH00923 AMJ96_CH00924 PF06169 Protein of unknown function (DUF982) AMJ96_CH00925 PF01544 CorA-like Mg2+ transporter protein AMJ96_CH00926 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH00926 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH00926 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_CH00926 PF12806 AMJ96_CH00926 AMJ96_CH00927 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_CH00928 PF12706 Beta-lactamase superfamily domain AMJ96_CH00929 PF00106 short chain dehydrogenase AMJ96_CH00930 PF01638 HxlR-like helix-turn-helix AMJ96_CH00931 PF05958 tRNA (Uracil-5-)-methyltransferase AMJ96_CH00932 PF01479 S4 domain AMJ96_CH00932 PF01728 FtsJ-like methyltransferase AMJ96_CH00933 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH00933 PF00672 HAMP domain AMJ96_CH00933 PF05227 CHASE3 domain AMJ96_CH00934 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH00934 PF02780 Transketolase, C-terminal domain AMJ96_CH00934 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMJ96_CH00935 PF13091 PLD-like domain AMJ96_CH00936 PF02678 Pirin AMJ96_CH00936 PF05726 Pirin C-terminal cupin domain AMJ96_CH00937 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH00938 PF02609 Exonuclease VII small subunit AMJ96_CH00939 PF00850 Histone deacetylase domain AMJ96_CH00941 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH00941 PF07729 FCD domain AMJ96_CH00942 PF05292 Malonyl-CoA decarboxylase (MCD) AMJ96_CH00942 PF17408 AMJ96_CH00942 AMJ96_CH00943 PF00501 AMP-binding enzyme AMJ96_CH00943 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH00944 PF03600 Citrate transporter AMJ96_CH00944 PF07158 AMJ96_CH00944 AMJ96_CH00945 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH00946 PF06339 AMJ96_CH00946 AMJ96_CH00947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH00947 PF03466 LysR substrate binding domain AMJ96_CH00948 PF01757 AMJ96_CH00948 AMJ96_CH00949 PF02632 BioY family AMJ96_CH00950 PF02361 Cobalt transport protein AMJ96_CH00951 PF00005 ABC transporter AMJ96_CH00952 PF06224 AMJ96_CH00952 AMJ96_CH00953 PF00925 GTP cyclohydrolase II AMJ96_CH00953 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMJ96_CH00954 PF01264 Chorismate synthase AMJ96_CH00955 PF07076 AMJ96_CH00955 AMJ96_CH00956 PF08972 Domain of unknown function (DUF1902) AMJ96_CH00957 PF07927 YcfA-like protein AMJ96_CH00958 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH00959 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH00960 PF00226 DnaJ domain AMJ96_CH00960 PF01556 DnaJ C terminal domain AMJ96_CH00961 PF16998 AMJ96_CH00961 AMJ96_CH00962 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH00962 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMJ96_CH00963 PF01522 Polysaccharide deacetylase AMJ96_CH00964 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH00964 PF05036 Sporulation related domain AMJ96_CH00965 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMJ96_CH00966 PF01384 AMJ96_CH00966 AMJ96_CH00967 PF01865 Protein of unknown function DUF47 AMJ96_CH00968 PF00293 NUDIX domain AMJ96_CH00969 PF00583 Acetyltransferase (GNAT) family AMJ96_CH00970 PF01523 Putative modulator of DNA gyrase AMJ96_CH00971 PF06776 Invasion associated locus B (IalB) protein AMJ96_CH00972 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_CH00972 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMJ96_CH00973 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_CH00974 PF01040 UbiA prenyltransferase family AMJ96_CH00976 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMJ96_CH00977 PF00510 Cytochrome c oxidase subunit III AMJ96_CH00978 PF02660 AMJ96_CH00978 AMJ96_CH00979 PF07931 Chloramphenicol phosphotransferase-like protein AMJ96_CH00980 PF06170 AMJ96_CH00980 AMJ96_CH00981 PF02104 AMJ96_CH00981 AMJ96_CH00982 PF02401 LytB protein AMJ96_CH00983 PF01636 Phosphotransferase enzyme family AMJ96_CH00984 PF00075 RNase H AMJ96_CH00986 PF10005 AMJ96_CH00986 AMJ96_CH00986 PF15887 AMJ96_CH00986 AMJ96_CH00987 PF05532 CsbD-like AMJ96_CH00988 PF02622 Uncharacterized ACR, COG1678 AMJ96_CH00989 PF11412 Disulphide bond corrector protein DsbC AMJ96_CH00990 PF08534 Redoxin AMJ96_CH00992 PF00005 ABC transporter AMJ96_CH00993 PF00950 AMJ96_CH00993 AMJ96_CH00994 PF01297 Periplasmic solute binding protein family AMJ96_CH00995 PF07876 Stress responsive A/B Barrel Domain AMJ96_CH00997 PF00563 EAL domain AMJ96_CH00997 PF00990 GGDEF domain AMJ96_CH00997 PF07696 7TMR-DISM extracellular 2 AMJ96_CH00997 PF08447 PAS fold AMJ96_CH00998 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH00999 PF00675 Insulinase (Peptidase family M16) AMJ96_CH00999 PF05193 Peptidase M16 inactive domain AMJ96_CH01000 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01000 PF14821 Threonine synthase N terminus AMJ96_CH01002 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01003 PF07690 Major Facilitator Superfamily AMJ96_CH01004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01004 PF03466 LysR substrate binding domain AMJ96_CH01008 PF12686 AMJ96_CH01008 AMJ96_CH01009 PF12840 Helix-turn-helix domain AMJ96_CH01010 PF07978 NIPSNAP AMJ96_CH01011 PF03992 Antibiotic biosynthesis monooxygenase AMJ96_CH01012 PF01555 DNA methylase AMJ96_CH01013 PF12680 SnoaL-like domain AMJ96_CH01014 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01015 PF00633 Helix-hairpin-helix motif AMJ96_CH01015 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJ96_CH01015 PF14815 NUDIX domain AMJ96_CH01016 PF05258 AMJ96_CH01016 AMJ96_CH01017 PF03693 Uncharacterised protein family (UPF0156) AMJ96_CH01018 PF05016 Plasmid stabilisation system protein AMJ96_CH01019 PF13462 Thioredoxin AMJ96_CH01020 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH01021 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01021 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH01022 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH01022 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMJ96_CH01022 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH01027 PF07386 AMJ96_CH01027 AMJ96_CH01029 PF00578 AhpC/TSA family AMJ96_CH01030 PF03435 Saccharopine dehydrogenase AMJ96_CH01030 PF13761 AMJ96_CH01030 AMJ96_CH01031 PF04134 AMJ96_CH01031 AMJ96_CH01032 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH01034 PF04471 Restriction endonuclease AMJ96_CH01034 PF14338 AMJ96_CH01034 AMJ96_CH01036 PF01420 Type I restriction modification DNA specificity domain AMJ96_CH01037 PF02384 N-6 DNA Methylase AMJ96_CH01037 PF12161 HsdM N-terminal domain AMJ96_CH01038 PF00271 Helicase conserved C-terminal domain AMJ96_CH01038 PF04851 Type III restriction enzyme, res subunit AMJ96_CH01038 PF08463 AMJ96_CH01038 AMJ96_CH01038 PF13643 AMJ96_CH01038 AMJ96_CH01040 PF14088 AMJ96_CH01040 AMJ96_CH01042 PF00106 short chain dehydrogenase AMJ96_CH01043 PF02661 Fic/DOC family AMJ96_CH01043 PF13784 Fic/DOC family N-terminal AMJ96_CH01044 PF13305 WHG domain AMJ96_CH01045 PF04012 AMJ96_CH01045 AMJ96_CH01046 PF05360 AMJ96_CH01046 AMJ96_CH01047 PF00501 AMP-binding enzyme AMJ96_CH01047 PF01553 Acyltransferase AMJ96_CH01047 PF07690 Major Facilitator Superfamily AMJ96_CH01049 PF07690 Major Facilitator Superfamily AMJ96_CH01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH01054 PF01638 HxlR-like helix-turn-helix AMJ96_CH01055 PF13460 NADH(P)-binding AMJ96_CH01056 PF13564 AMJ96_CH01056 AMJ96_CH01057 PF03466 LysR substrate binding domain AMJ96_CH01058 PF06169 Protein of unknown function (DUF982) AMJ96_CH01067 PF07750 AMJ96_CH01067 AMJ96_CH01068 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01070 PF01755 AMJ96_CH01070 AMJ96_CH01071 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01072 PF00072 Response regulator receiver domain AMJ96_CH01072 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01073 PF12840 Helix-turn-helix domain AMJ96_CH01074 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH01075 PF14026 Protein of unknown function (DUF4242) AMJ96_CH01076 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01076 PF13431 Tetratricopeptide repeat AMJ96_CH01076 PF13432 Tetratricopeptide repeat AMJ96_CH01077 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01077 PF07719 Tetratricopeptide repeat AMJ96_CH01080 PF00106 short chain dehydrogenase AMJ96_CH01081 PF06719 AMJ96_CH01081 AMJ96_CH01081 PF12833 Helix-turn-helix domain AMJ96_CH01082 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH01083 PF12697 Alpha/beta hydrolase family AMJ96_CH01084 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01084 PF00672 HAMP domain AMJ96_CH01084 PF12860 AMJ96_CH01084 AMJ96_CH01086 PF09966 Uncharacterized protein conserved in bacteria (DUF2200) AMJ96_CH01088 PF13489 Methyltransferase domain AMJ96_CH01089 PF00484 Carbonic anhydrase AMJ96_CH01090 PF00916 AMJ96_CH01090 AMJ96_CH01091 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01091 PF00679 Elongation factor G C-terminus AMJ96_CH01091 PF03764 Elongation factor G, domain IV AMJ96_CH01094 PF01569 PAP2 superfamily AMJ96_CH01095 PF14099 Polysaccharide lyase AMJ96_CH01096 PF03160 Calx-beta domain AMJ96_CH01096 PF07995 Glucose / Sorbosone dehydrogenase AMJ96_CH01096 PF13313 AMJ96_CH01096 AMJ96_CH01098 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01098 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH01099 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH01100 PF12840 Helix-turn-helix domain AMJ96_CH01101 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH01102 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH01103 PF12840 Helix-turn-helix domain AMJ96_CH01107 PF07332 AMJ96_CH01107 AMJ96_CH01108 PF12277 AMJ96_CH01108 AMJ96_CH01110 PF02522 Aminoglycoside 3-N-acetyltransferase AMJ96_CH01112 PF06078 Bacterial protein of unknown function (DUF937) AMJ96_CH01113 PF01738 Dienelactone hydrolase family AMJ96_CH01114 PF14384 AMJ96_CH01114 AMJ96_CH01115 PF04365 Protein of unknown function (DUF497) AMJ96_CH01137 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01139 PF00959 Phage lysozyme AMJ96_CH01147 PF04134 AMJ96_CH01147 AMJ96_CH01148 PF08889 AMJ96_CH01148 AMJ96_CH01149 PF13489 Methyltransferase domain AMJ96_CH01150 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMJ96_CH01151 PF00535 Glycosyl transferase family 2 AMJ96_CH01152 PF13649 Methyltransferase domain AMJ96_CH01153 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01155 PF04138 AMJ96_CH01155 AMJ96_CH01156 PF13489 Methyltransferase domain AMJ96_CH01157 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01158 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01159 PF02366 AMJ96_CH01159 AMJ96_CH01160 PF13180 PDZ domain AMJ96_CH01160 PF13365 Trypsin-like peptidase domain AMJ96_CH01161 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH01161 PF13377 Periplasmic binding protein-like domain AMJ96_CH01162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01162 PF03466 LysR substrate binding domain AMJ96_CH01163 PF05368 NmrA-like family AMJ96_CH01164 PF00107 Zinc-binding dehydrogenase AMJ96_CH01164 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01165 PF03466 LysR substrate binding domain AMJ96_CH01166 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01166 PF00912 Transglycosylase AMJ96_CH01166 PF07886 AMJ96_CH01166 AMJ96_CH01167 PF00578 AhpC/TSA family AMJ96_CH01170 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01171 PF01507 Phosphoadenosine phosphosulfate reductase family AMJ96_CH01172 PF01507 Phosphoadenosine phosphosulfate reductase family AMJ96_CH01173 PF02082 Transcriptional regulator AMJ96_CH01174 PF00732 GMC oxidoreductase AMJ96_CH01174 PF05199 GMC oxidoreductase AMJ96_CH01175 PF00171 Aldehyde dehydrogenase family AMJ96_CH01176 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01176 PF13977 Bacterial transcriptional repressor AMJ96_CH01177 PF03729 AMJ96_CH01177 AMJ96_CH01178 PF03693 Uncharacterised protein family (UPF0156) AMJ96_CH01179 PF00563 EAL domain AMJ96_CH01179 PF00571 CBS domain AMJ96_CH01179 PF00990 GGDEF domain AMJ96_CH01180 PF00107 Zinc-binding dehydrogenase AMJ96_CH01180 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01181 PF07690 Major Facilitator Superfamily AMJ96_CH01183 PF07690 Major Facilitator Superfamily AMJ96_CH01184 PF06089 AMJ96_CH01184 AMJ96_CH01185 PF00455 AMJ96_CH01185 AMJ96_CH01185 PF08220 DeoR-like helix-turn-helix domain AMJ96_CH01187 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01187 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01188 PF06182 AMJ96_CH01188 AMJ96_CH01189 PF06182 AMJ96_CH01189 AMJ96_CH01190 PF00005 ABC transporter AMJ96_CH01191 PF11160 AMJ96_CH01191 AMJ96_CH01192 PF09990 AMJ96_CH01192 AMJ96_CH01193 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH01195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01195 PF03466 LysR substrate binding domain AMJ96_CH01196 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01196 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH01198 PF01161 Phosphatidylethanolamine-binding protein AMJ96_CH01199 PF05048 Periplasmic copper-binding protein (NosD) AMJ96_CH01199 PF13229 Right handed beta helix region AMJ96_CH01200 PF00563 EAL domain AMJ96_CH01200 PF00990 GGDEF domain AMJ96_CH01200 PF08448 PAS fold AMJ96_CH01200 PF13185 GAF domain AMJ96_CH01201 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01201 PF00536 SAM domain (Sterile alpha motif) AMJ96_CH01201 PF13191 AAA ATPase domain AMJ96_CH01202 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01202 PF03472 Autoinducer binding domain AMJ96_CH01203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH01203 PF08447 PAS fold AMJ96_CH01203 PF13426 PAS domain AMJ96_CH01204 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_CH01205 PF12697 Alpha/beta hydrolase family AMJ96_CH01207 PF01068 ATP dependent DNA ligase domain AMJ96_CH01207 PF04675 DNA ligase N terminus AMJ96_CH01207 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH01208 PF00326 Prolyl oligopeptidase family AMJ96_CH01209 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01210 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01211 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH01213 PF01165 Ribosomal protein S21 AMJ96_CH01215 PF01047 MarR family AMJ96_CH01216 PF02566 OsmC-like protein AMJ96_CH01217 PF01047 MarR family AMJ96_CH01218 PF05988 AMJ96_CH01218 AMJ96_CH01219 PF07617 AMJ96_CH01219 AMJ96_CH01220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01221 PF00005 ABC transporter AMJ96_CH01222 PF00005 ABC transporter AMJ96_CH01223 PF05872 AMJ96_CH01223 AMJ96_CH01225 PF00293 NUDIX domain AMJ96_CH01227 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMJ96_CH01227 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMJ96_CH01228 PF13649 Methyltransferase domain AMJ96_CH01229 PF00571 CBS domain AMJ96_CH01229 PF01595 AMJ96_CH01229 AMJ96_CH01229 PF03471 Transporter associated domain AMJ96_CH01231 PF07883 Cupin domain AMJ96_CH01232 PF00107 Zinc-binding dehydrogenase AMJ96_CH01232 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH01233 PF01063 Aminotransferase class IV AMJ96_CH01234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01234 PF03466 LysR substrate binding domain AMJ96_CH01235 PF00529 HlyD family secretion protein AMJ96_CH01235 PF16576 AMJ96_CH01235 AMJ96_CH01236 PF07690 Major Facilitator Superfamily AMJ96_CH01237 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01238 PF02540 NAD synthase AMJ96_CH01239 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01239 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH01240 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01241 PF07690 Major Facilitator Superfamily AMJ96_CH01242 PF12680 SnoaL-like domain AMJ96_CH01243 PF01925 AMJ96_CH01243 AMJ96_CH01244 PF08241 Methyltransferase domain AMJ96_CH01246 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMJ96_CH01246 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMJ96_CH01247 PF00149 Calcineurin-like phosphoesterase AMJ96_CH01248 PF08279 HTH domain AMJ96_CH01248 PF13280 AMJ96_CH01248 AMJ96_CH01249 PF01810 AMJ96_CH01249 AMJ96_CH01250 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH01251 PF13460 NADH(P)-binding AMJ96_CH01253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01253 PF03466 LysR substrate binding domain AMJ96_CH01254 PF01322 Cytochrome C' AMJ96_CH01255 PF00034 Cytochrome c AMJ96_CH01256 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH01256 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01257 PF00583 Acetyltransferase (GNAT) family AMJ96_CH01259 PF02583 Metal-sensitive transcriptional repressor AMJ96_CH01260 PF01545 Cation efflux family AMJ96_CH01261 PF13354 Beta-lactamase enzyme family AMJ96_CH01262 PF06568 AMJ96_CH01262 AMJ96_CH01263 PF03704 Bacterial transcriptional activator domain AMJ96_CH01264 PF01011 PQQ enzyme repeat AMJ96_CH01264 PF13360 PQQ-like domain AMJ96_CH01265 PF02696 AMJ96_CH01265 AMJ96_CH01266 PF07690 Major Facilitator Superfamily AMJ96_CH01267 PF08002 Protein of unknown function (DUF1697) AMJ96_CH01268 PF00326 Prolyl oligopeptidase family AMJ96_CH01268 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMJ96_CH01269 PF06059 AMJ96_CH01269 AMJ96_CH01270 PF01522 Polysaccharide deacetylase AMJ96_CH01271 PF01266 FAD dependent oxidoreductase AMJ96_CH01272 PF01594 AMJ96_CH01272 AMJ96_CH01274 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01275 PF00582 Universal stress protein family AMJ96_CH01276 PF03006 AMJ96_CH01276 AMJ96_CH01277 PF13420 Acetyltransferase (GNAT) domain AMJ96_CH01278 PF00805 Pentapeptide repeats (8 copies) AMJ96_CH01279 PF06233 AMJ96_CH01279 AMJ96_CH01280 PF00166 Chaperonin 10 Kd subunit AMJ96_CH01281 PF00118 TCP-1/cpn60 chaperonin family AMJ96_CH01283 PF00534 Glycosyl transferases group 1 AMJ96_CH01283 PF13439 Glycosyltransferase Family 4 AMJ96_CH01284 PF06202 Amylo-alpha-1,6-glucosidase AMJ96_CH01284 PF14742 AMJ96_CH01284 AMJ96_CH01286 PF00011 Hsp20/alpha crystallin family AMJ96_CH01287 PF00011 Hsp20/alpha crystallin family AMJ96_CH01288 PF03779 AMJ96_CH01288 AMJ96_CH01289 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH01290 PF01641 SelR domain AMJ96_CH01293 PF05443 ROS/MUCR transcriptional regulator protein AMJ96_CH01294 PF02657 Fe-S metabolism associated domain AMJ96_CH01295 PF17264 AMJ96_CH01295 AMJ96_CH01297 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01298 PF01471 Putative peptidoglycan binding domain AMJ96_CH01299 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH01300 PF07372 Protein of unknown function (DUF1491) AMJ96_CH01301 PF10098 AMJ96_CH01301 AMJ96_CH01305 PF06742 Protein of unknown function (DUF1214) AMJ96_CH01306 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01306 PF00912 Transglycosylase AMJ96_CH01307 PF03692 AMJ96_CH01307 AMJ96_CH01308 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01309 PF00106 short chain dehydrogenase AMJ96_CH01312 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01313 PF13180 PDZ domain AMJ96_CH01313 PF13365 Trypsin-like peptidase domain AMJ96_CH01314 PF00155 Aminotransferase class I and II AMJ96_CH01314 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH01315 PF06170 AMJ96_CH01315 AMJ96_CH01316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01316 PF03466 LysR substrate binding domain AMJ96_CH01317 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01317 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH01318 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH01319 PF07080 Protein of unknown function (DUF1348) AMJ96_CH01320 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01322 PF00182 Chitinase class I AMJ96_CH01323 PF07876 Stress responsive A/B Barrel Domain AMJ96_CH01324 PF07690 Major Facilitator Superfamily AMJ96_CH01326 PF00072 Response regulator receiver domain AMJ96_CH01326 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01329 PF14559 Tetratricopeptide repeat AMJ96_CH01330 PF03100 CcmE AMJ96_CH01331 PF01578 AMJ96_CH01331 AMJ96_CH01331 PF16327 AMJ96_CH01331 AMJ96_CH01332 PF03918 Cytochrome C biogenesis protein AMJ96_CH01333 PF13180 PDZ domain AMJ96_CH01333 PF13365 Trypsin-like peptidase domain AMJ96_CH01334 PF00072 Response regulator receiver domain AMJ96_CH01334 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01335 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01335 PF00672 HAMP domain AMJ96_CH01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01336 PF03710 Glutamate-ammonia ligase adenylyltransferase AMJ96_CH01336 PF08335 GlnD PII-uridylyltransferase AMJ96_CH01337 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01337 PF08447 PAS fold AMJ96_CH01337 PF12860 AMJ96_CH01337 AMJ96_CH01338 PF01433 Peptidase family M1 AMJ96_CH01338 PF11940 Domain of unknown function (DUF3458) AMJ96_CH01338 PF17432 AMJ96_CH01338 AMJ96_CH01339 PF00892 EamA-like transporter family AMJ96_CH01343 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH01344 PF00012 Hsp70 protein AMJ96_CH01345 PF00873 AcrB/AcrD/AcrF family AMJ96_CH01346 PF16576 AMJ96_CH01346 AMJ96_CH01347 PF01636 Phosphotransferase enzyme family AMJ96_CH01348 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH01349 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMJ96_CH01349 PF13450 NAD(P)-binding Rossmann-like domain AMJ96_CH01350 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01351 PF00892 EamA-like transporter family AMJ96_CH01352 PF01037 AsnC family AMJ96_CH01352 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH01353 PF00571 CBS domain AMJ96_CH01353 PF01769 Divalent cation transporter AMJ96_CH01353 PF03448 MgtE intracellular N domain AMJ96_CH01354 PF07690 Major Facilitator Superfamily AMJ96_CH01355 PF00781 Diacylglycerol kinase catalytic domain AMJ96_CH01356 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH01357 PF00202 Aminotransferase class-III AMJ96_CH01358 PF13231 AMJ96_CH01358 AMJ96_CH01359 PF13231 AMJ96_CH01359 AMJ96_CH01360 PF00535 Glycosyl transferase family 2 AMJ96_CH01361 PF13231 AMJ96_CH01361 AMJ96_CH01362 PF03706 AMJ96_CH01362 AMJ96_CH01363 PF04542 Sigma-70 region 2 AMJ96_CH01363 PF08281 Sigma-70, region 4 AMJ96_CH01364 PF03795 YCII-related domain AMJ96_CH01365 PF03795 YCII-related domain AMJ96_CH01366 PF03795 YCII-related domain AMJ96_CH01368 PF01048 Phosphorylase superfamily AMJ96_CH01368 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AMJ96_CH01370 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AMJ96_CH01372 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01375 PF10116 AMJ96_CH01375 AMJ96_CH01376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01380 PF01554 MatE AMJ96_CH01382 PF12833 Helix-turn-helix domain AMJ96_CH01383 PF06568 AMJ96_CH01383 AMJ96_CH01384 PF04962 KduI/IolB family AMJ96_CH01385 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH01386 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH01386 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH01386 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH01387 PF00294 pfkB family carbohydrate kinase AMJ96_CH01387 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) AMJ96_CH01388 PF01380 SIS domain AMJ96_CH01388 PF01418 Helix-turn-helix domain, rpiR family AMJ96_CH01389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01389 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH01390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01390 PF14759 Reductase C-terminal AMJ96_CH01392 PF02530 AMJ96_CH01392 AMJ96_CH01393 PF16363 AMJ96_CH01393 AMJ96_CH01394 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH01395 PF00534 Glycosyl transferases group 1 AMJ96_CH01395 PF13439 Glycosyltransferase Family 4 AMJ96_CH01396 PF00534 Glycosyl transferases group 1 AMJ96_CH01396 PF13579 Glycosyl transferase 4-like domain AMJ96_CH01397 PF00535 Glycosyl transferase family 2 AMJ96_CH01398 PF04932 AMJ96_CH01398 AMJ96_CH01399 PF13229 Right handed beta helix region AMJ96_CH01401 PF03808 AMJ96_CH01401 AMJ96_CH01402 PF02397 AMJ96_CH01402 AMJ96_CH01403 PF16363 AMJ96_CH01403 AMJ96_CH01404 PF00535 Glycosyl transferase family 2 AMJ96_CH01405 PF00535 Glycosyl transferase family 2 AMJ96_CH01406 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01407 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01408 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01409 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01410 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01410 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH01411 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01412 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJ96_CH01413 PF13440 AMJ96_CH01413 AMJ96_CH01413 PF14667 Polysaccharide biosynthesis C-terminal domain AMJ96_CH01414 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH01415 PF05345 Putative Ig domain AMJ96_CH01415 PF13313 AMJ96_CH01415 AMJ96_CH01416 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01416 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH01417 PF13313 AMJ96_CH01417 AMJ96_CH01418 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01418 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH01420 PF00005 ABC transporter AMJ96_CH01420 PF00664 ABC transporter transmembrane region AMJ96_CH01420 PF03412 Peptidase C39 family AMJ96_CH01421 PF13437 HlyD family secretion protein AMJ96_CH01422 PF00561 alpha/beta hydrolase fold AMJ96_CH01423 PF01464 Transglycosylase SLT domain AMJ96_CH01425 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH01426 PF01668 SmpB protein AMJ96_CH01427 PF01936 NYN domain AMJ96_CH01428 PF01192 RNA polymerase Rpb6 AMJ96_CH01429 PF02824 TGS domain AMJ96_CH01429 PF04607 Region found in RelA / SpoT proteins AMJ96_CH01429 PF13291 ACT domain AMJ96_CH01429 PF13328 HD domain AMJ96_CH01430 PF12086 AMJ96_CH01430 AMJ96_CH01431 PF09835 AMJ96_CH01431 AMJ96_CH01432 PF01648 4'-phosphopantetheinyl transferase superfamily AMJ96_CH01433 PF00717 Peptidase S24-like AMJ96_CH01433 PF10502 Signal peptidase, peptidase S26 AMJ96_CH01434 PF00035 Double-stranded RNA binding motif AMJ96_CH01434 PF14622 Ribonuclease-III-like AMJ96_CH01435 PF01926 50S ribosome-binding GTPase AMJ96_CH01435 PF07650 KH domain AMJ96_CH01436 PF00027 Cyclic nucleotide-binding domain AMJ96_CH01436 PF13545 Crp-like helix-turn-helix domain AMJ96_CH01437 PF00072 Response regulator receiver domain AMJ96_CH01438 PF02565 Recombination protein O C terminal AMJ96_CH01438 PF11967 Recombination protein O N terminal AMJ96_CH01439 PF00248 Aldo/keto reductase family AMJ96_CH01440 PF03473 MOSC domain AMJ96_CH01440 PF03476 MOSC N-terminal beta barrel domain AMJ96_CH01441 PF01966 HD domain AMJ96_CH01442 PF00563 EAL domain AMJ96_CH01442 PF00990 GGDEF domain AMJ96_CH01442 PF12860 AMJ96_CH01442 AMJ96_CH01444 PF00080 Copper/zinc superoxide dismutase (SODC) AMJ96_CH01445 PF00924 Mechanosensitive ion channel AMJ96_CH01447 PF13023 HD domain AMJ96_CH01448 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH01448 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH01451 PF09539 AMJ96_CH01451 AMJ96_CH01452 PF00293 NUDIX domain AMJ96_CH01453 PF02694 AMJ96_CH01453 AMJ96_CH01454 PF02586 Uncharacterised ACR, COG2135 AMJ96_CH01456 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH01456 PF08009 AMJ96_CH01456 AMJ96_CH01457 PF02666 AMJ96_CH01457 AMJ96_CH01458 PF12840 Helix-turn-helix domain AMJ96_CH01460 PF00574 Clp protease AMJ96_CH01461 PF00005 ABC transporter AMJ96_CH01461 PF00664 ABC transporter transmembrane region AMJ96_CH01462 PF01476 LysM domain AMJ96_CH01463 PF03641 Possible lysine decarboxylase AMJ96_CH01464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01464 PF03466 LysR substrate binding domain AMJ96_CH01465 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH01466 PF00326 Prolyl oligopeptidase family AMJ96_CH01466 PF00561 alpha/beta hydrolase fold AMJ96_CH01468 PF00892 EamA-like transporter family AMJ96_CH01469 PF00682 HMGL-like AMJ96_CH01469 PF08502 LeuA allosteric (dimerisation) domain AMJ96_CH01470 PF00561 alpha/beta hydrolase fold AMJ96_CH01471 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH01472 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH01473 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH01474 PF04480 Protein of unknown function (DUF559) AMJ96_CH01475 PF01406 tRNA synthetases class I (C) catalytic domain AMJ96_CH01477 PF01183 Glycosyl hydrolases family 25 AMJ96_CH01478 PF00106 short chain dehydrogenase AMJ96_CH01479 PF00156 Phosphoribosyl transferase domain AMJ96_CH01479 PF13537 Glutamine amidotransferase domain AMJ96_CH01480 PF02674 AMJ96_CH01480 AMJ96_CH01481 PF13481 AAA domain AMJ96_CH01481 PF13541 Subunit ChlI of Mg-chelatase AMJ96_CH01482 PF01810 AMJ96_CH01482 AMJ96_CH01483 PF00842 Alanine racemase, C-terminal domain AMJ96_CH01483 PF01168 Alanine racemase, N-terminal domain AMJ96_CH01484 PF02311 AraC-like ligand binding domain AMJ96_CH01484 PF12833 Helix-turn-helix domain AMJ96_CH01485 PF03591 AMJ96_CH01485 AMJ96_CH01486 PF05437 AMJ96_CH01486 AMJ96_CH01487 PF00772 DnaB-like helicase N terminal domain AMJ96_CH01487 PF03796 DnaB-like helicase C terminal domain AMJ96_CH01488 PF01281 Ribosomal protein L9, N-terminal domain AMJ96_CH01488 PF03948 Ribosomal protein L9, C-terminal domain AMJ96_CH01490 PF01084 Ribosomal protein S18 AMJ96_CH01491 PF01250 Ribosomal protein S6 AMJ96_CH01492 PF00248 Aldo/keto reductase family AMJ96_CH01493 PF00698 Acyl transferase domain AMJ96_CH01494 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH01495 PF00550 Phosphopantetheine attachment site AMJ96_CH01496 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH01496 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH01497 PF02618 YceG-like family AMJ96_CH01498 PF03755 AMJ96_CH01498 AMJ96_CH01498 PF08340 AMJ96_CH01498 AMJ96_CH01499 PF00625 Guanylate kinase AMJ96_CH01500 PF00398 Ribosomal RNA adenine dimethylase AMJ96_CH01501 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMJ96_CH01503 PF04453 Organic solvent tolerance protein AMJ96_CH01504 PF03739 AMJ96_CH01504 AMJ96_CH01505 PF03739 AMJ96_CH01505 AMJ96_CH01506 PF01569 PAP2 superfamily AMJ96_CH01507 PF00883 Cytosol aminopeptidase family, catalytic domain AMJ96_CH01507 PF02789 Cytosol aminopeptidase family, N-terminal domain AMJ96_CH01508 PF04364 DNA polymerase III chi subunit, HolC AMJ96_CH01509 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01510 PF00326 Prolyl oligopeptidase family AMJ96_CH01510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMJ96_CH01511 PF01522 Polysaccharide deacetylase AMJ96_CH01512 PF00005 ABC transporter AMJ96_CH01512 PF12848 ABC transporter AMJ96_CH01512 PF16326 AMJ96_CH01512 AMJ96_CH01513 PF00990 GGDEF domain AMJ96_CH01514 PF05163 DinB family AMJ96_CH01516 PF00334 Nucleoside diphosphate kinase AMJ96_CH01518 PF11706 CGNR zinc finger AMJ96_CH01519 PF02653 AMJ96_CH01519 AMJ96_CH01520 PF02391 MoaE protein AMJ96_CH01521 PF02597 ThiS family AMJ96_CH01522 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH01523 PF01541 GIY-YIG catalytic domain AMJ96_CH01523 PF02151 UvrB/uvrC motif AMJ96_CH01523 PF08459 UvrC Helix-hairpin-helix N-terminal AMJ96_CH01523 PF12826 Helix-hairpin-helix motif AMJ96_CH01524 PF00106 short chain dehydrogenase AMJ96_CH01525 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH01526 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH01527 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AMJ96_CH01528 PF00384 Molybdopterin oxidoreductase AMJ96_CH01528 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH01528 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH01529 PF00293 NUDIX domain AMJ96_CH01530 PF01979 Amidohydrolase family AMJ96_CH01531 PF00551 Formyl transferase AMJ96_CH01532 PF00586 AIR synthase related protein, N-terminal domain AMJ96_CH01532 PF02769 AIR synthase related protein, C-terminal domain AMJ96_CH01533 PF01594 AMJ96_CH01533 AMJ96_CH01534 PF00308 Bacterial dnaA protein AMJ96_CH01535 PF02503 Polyphosphate kinase middle domain AMJ96_CH01535 PF13089 Polyphosphate kinase N-terminal domain AMJ96_CH01535 PF13090 Polyphosphate kinase C-terminal domain AMJ96_CH01536 PF02541 Ppx/GppA phosphatase family AMJ96_CH01537 PF13449 Esterase-like activity of phytase AMJ96_CH01538 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH01539 PF00570 HRDC domain AMJ96_CH01539 PF01612 3'-5' exonuclease AMJ96_CH01540 PF00394 Multicopper oxidase AMJ96_CH01540 PF07731 Multicopper oxidase AMJ96_CH01540 PF07732 Multicopper oxidase AMJ96_CH01541 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH01541 PF01336 OB-fold nucleic acid binding domain AMJ96_CH01541 PF02938 GAD domain AMJ96_CH01543 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJ96_CH01543 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJ96_CH01544 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH01545 PF00892 EamA-like transporter family AMJ96_CH01546 PF04376 AMJ96_CH01546 AMJ96_CH01546 PF04377 AMJ96_CH01546 AMJ96_CH01547 PF06271 AMJ96_CH01547 AMJ96_CH01548 PF00490 Delta-aminolevulinic acid dehydratase AMJ96_CH01550 PF13463 Winged helix DNA-binding domain AMJ96_CH01551 PF01471 Putative peptidoglycan binding domain AMJ96_CH01551 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01552 PF00464 Serine hydroxymethyltransferase AMJ96_CH01553 PF03477 ATP cone domain AMJ96_CH01554 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJ96_CH01554 PF01872 RibD C-terminal domain AMJ96_CH01555 PF00677 Lumazine binding domain AMJ96_CH01556 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH01557 PF07883 Cupin domain AMJ96_CH01559 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMJ96_CH01560 PF01029 NusB family AMJ96_CH01561 PF03030 Inorganic H+ pyrophosphatase AMJ96_CH01562 PF04355 SmpA / OmlA family AMJ96_CH01563 PF03981 AMJ96_CH01563 AMJ96_CH01564 PF02620 AMJ96_CH01564 AMJ96_CH01565 PF02504 Fatty acid synthesis protein AMJ96_CH01566 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMJ96_CH01566 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMJ96_CH01567 PF00216 Bacterial DNA-binding protein AMJ96_CH01568 PF13411 MerR HTH family regulatory protein AMJ96_CH01569 PF00072 Response regulator receiver domain AMJ96_CH01570 PF00072 Response regulator receiver domain AMJ96_CH01570 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01570 PF13493 Domain of unknown function (DUF4118) AMJ96_CH01571 PF06823 AMJ96_CH01571 AMJ96_CH01572 PF17038 AMJ96_CH01572 AMJ96_CH01573 PF00535 Glycosyl transferase family 2 AMJ96_CH01573 PF03552 Cellulose synthase AMJ96_CH01573 PF07238 PilZ domain AMJ96_CH01574 PF03170 Bacterial cellulose synthase subunit AMJ96_CH01575 PF01270 Glycosyl hydrolases family 8 AMJ96_CH01577 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01580 PF13489 Methyltransferase domain AMJ96_CH01583 PF01381 Helix-turn-helix AMJ96_CH01584 PF00480 ROK family AMJ96_CH01584 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH01586 PF00583 Acetyltransferase (GNAT) family AMJ96_CH01587 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH01588 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01589 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01590 PF04932 AMJ96_CH01590 AMJ96_CH01591 PF02397 AMJ96_CH01591 AMJ96_CH01591 PF13727 CoA-binding domain AMJ96_CH01592 PF00534 Glycosyl transferases group 1 AMJ96_CH01592 PF13439 Glycosyltransferase Family 4 AMJ96_CH01593 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH01593 PF10531 SLBB domain AMJ96_CH01594 PF02706 Chain length determinant protein AMJ96_CH01595 PF13480 Acetyltransferase (GNAT) domain AMJ96_CH01596 PF11003 AMJ96_CH01596 AMJ96_CH01597 PF02628 AMJ96_CH01597 AMJ96_CH01598 PF01925 AMJ96_CH01598 AMJ96_CH01599 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJ96_CH01600 PF00491 Arginase family AMJ96_CH01601 PF07690 Major Facilitator Superfamily AMJ96_CH01602 PF00380 Ribosomal protein S9/S16 AMJ96_CH01603 PF00572 Ribosomal protein L13 AMJ96_CH01604 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_CH01605 PF00892 EamA-like transporter family AMJ96_CH01607 PF13380 CoA binding domain AMJ96_CH01608 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH01612 PF13238 AAA domain AMJ96_CH01613 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01614 PF06169 Protein of unknown function (DUF982) AMJ96_CH01615 PF05899 Protein of unknown function (DUF861) AMJ96_CH01616 PF00563 EAL domain AMJ96_CH01616 PF00990 GGDEF domain AMJ96_CH01616 PF05228 AMJ96_CH01616 AMJ96_CH01617 PF00067 Cytochrome P450 AMJ96_CH01618 PF00990 GGDEF domain AMJ96_CH01619 PF00574 Clp protease AMJ96_CH01620 PF06689 ClpX C4-type zinc finger AMJ96_CH01620 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH01620 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH01621 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH01621 PF02190 ATP-dependent protease La (LON) domain AMJ96_CH01621 PF05362 Lon protease (S16) C-terminal proteolytic domain AMJ96_CH01623 PF00216 Bacterial DNA-binding protein AMJ96_CH01625 PF00892 EamA-like transporter family AMJ96_CH01626 PF00248 Aldo/keto reductase family AMJ96_CH01627 PF07883 Cupin domain AMJ96_CH01628 PF13578 Methyltransferase domain AMJ96_CH01630 PF00255 Glutathione peroxidase AMJ96_CH01634 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMJ96_CH01635 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH01636 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMJ96_CH01637 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMJ96_CH01639 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMJ96_CH01640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH01640 PF10531 SLBB domain AMJ96_CH01640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH01642 PF00384 Molybdopterin oxidoreductase AMJ96_CH01642 PF09326 AMJ96_CH01642 AMJ96_CH01642 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH01642 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH01643 PF00146 NADH dehydrogenase AMJ96_CH01644 PF12838 4Fe-4S dicluster domain AMJ96_CH01645 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMJ96_CH01646 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJ96_CH01647 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH01647 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMJ96_CH01648 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH01649 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH01650 PF02237 Biotin protein ligase C terminal domain AMJ96_CH01650 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH01651 PF07521 RNA-metabolising metallo-beta-lactamase AMJ96_CH01651 PF12706 Beta-lactamase superfamily domain AMJ96_CH01652 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01653 PF07330 AMJ96_CH01653 AMJ96_CH01654 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH01654 PF03129 Anticodon binding domain AMJ96_CH01655 PF02687 AMJ96_CH01655 AMJ96_CH01655 PF12704 MacB-like periplasmic core domain AMJ96_CH01656 PF00005 ABC transporter AMJ96_CH01658 PF02811 PHP domain AMJ96_CH01658 PF07733 Bacterial DNA polymerase III alpha subunit AMJ96_CH01658 PF14579 Helix-hairpin-helix motif AMJ96_CH01659 PF01471 Putative peptidoglycan binding domain AMJ96_CH01659 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01660 PF00817 impB/mucB/samB family AMJ96_CH01660 PF11799 impB/mucB/samB family C-terminal domain AMJ96_CH01661 PF00583 Acetyltransferase (GNAT) family AMJ96_CH01663 PF12096 AMJ96_CH01663 AMJ96_CH01664 PF00072 Response regulator receiver domain AMJ96_CH01665 PF00072 Response regulator receiver domain AMJ96_CH01665 PF00990 GGDEF domain AMJ96_CH01667 PF00471 Ribosomal protein L33 AMJ96_CH01668 PF07690 Major Facilitator Superfamily AMJ96_CH01669 PF06170 AMJ96_CH01669 AMJ96_CH01670 PF00575 S1 RNA binding domain AMJ96_CH01670 PF00773 RNB domain AMJ96_CH01671 PF01131 DNA topoisomerase AMJ96_CH01671 PF01396 AMJ96_CH01671 AMJ96_CH01671 PF01751 Toprim domain AMJ96_CH01671 PF13368 AMJ96_CH01671 AMJ96_CH01672 PF02481 DNA recombination-mediator protein A AMJ96_CH01673 PF02660 AMJ96_CH01673 AMJ96_CH01674 PF01979 Amidohydrolase family AMJ96_CH01675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJ96_CH01675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJ96_CH01676 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH01676 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_CH01677 PF10150 Ribonuclease E/G family AMJ96_CH01678 PF01520 N-acetylmuramoyl-L-alanine amidase AMJ96_CH01678 PF11741 AMIN domain AMJ96_CH01679 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH01679 PF00912 Transglycosylase AMJ96_CH01679 PF17092 AMJ96_CH01679 AMJ96_CH01680 PF00472 RF-1 domain AMJ96_CH01680 PF03462 PCRF domain AMJ96_CH01683 PF01513 ATP-NAD kinase AMJ96_CH01687 PF02974 Protease inhibitor Inh AMJ96_CH01688 PF00588 SpoU rRNA Methylase family AMJ96_CH01688 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMJ96_CH01692 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01692 PF03143 Elongation factor Tu C-terminal domain AMJ96_CH01692 PF03144 Elongation factor Tu domain 2 AMJ96_CH01695 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01698 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMJ96_CH01699 PF00467 KOW motif AMJ96_CH01699 PF02357 Transcription termination factor nusG AMJ96_CH01700 PF00298 Ribosomal protein L11, RNA binding domain AMJ96_CH01700 PF03946 Ribosomal protein L11, N-terminal domain AMJ96_CH01701 PF00687 Ribosomal protein L1p/L10e family AMJ96_CH01703 PF00466 Ribosomal protein L10 AMJ96_CH01704 PF00542 Ribosomal protein L7/L12 C-terminal domain AMJ96_CH01704 PF16320 AMJ96_CH01704 AMJ96_CH01706 PF00562 RNA polymerase Rpb2, domain 6 AMJ96_CH01706 PF04560 RNA polymerase Rpb2, domain 7 AMJ96_CH01706 PF04561 RNA polymerase Rpb2, domain 2 AMJ96_CH01706 PF04563 RNA polymerase beta subunit AMJ96_CH01706 PF04565 RNA polymerase Rpb2, domain 3 AMJ96_CH01706 PF10385 RNA polymerase beta subunit external 1 domain AMJ96_CH01707 PF00623 RNA polymerase Rpb1, domain 2 AMJ96_CH01707 PF04983 RNA polymerase Rpb1, domain 3 AMJ96_CH01707 PF04997 RNA polymerase Rpb1, domain 1 AMJ96_CH01707 PF04998 RNA polymerase Rpb1, domain 5 AMJ96_CH01707 PF05000 RNA polymerase Rpb1, domain 4 AMJ96_CH01710 PF00164 Ribosomal protein S12/S23 AMJ96_CH01711 PF00177 Ribosomal protein S7p/S5e AMJ96_CH01712 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01712 PF00679 Elongation factor G C-terminus AMJ96_CH01712 PF03144 Elongation factor Tu domain 2 AMJ96_CH01712 PF03764 Elongation factor G, domain IV AMJ96_CH01712 PF14492 Elongation Factor G, domain II AMJ96_CH01713 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH01713 PF03143 Elongation factor Tu C-terminal domain AMJ96_CH01713 PF03144 Elongation factor Tu domain 2 AMJ96_CH01714 PF00338 Ribosomal protein S10p/S20e AMJ96_CH01715 PF00297 Ribosomal protein L3 AMJ96_CH01716 PF00573 Ribosomal protein L4/L1 family AMJ96_CH01717 PF00276 Ribosomal protein L23 AMJ96_CH01718 PF00181 Ribosomal Proteins L2, RNA binding domain AMJ96_CH01718 PF03947 Ribosomal Proteins L2, C-terminal domain AMJ96_CH01719 PF00203 Ribosomal protein S19 AMJ96_CH01720 PF00237 Ribosomal protein L22p/L17e AMJ96_CH01721 PF00189 Ribosomal protein S3, C-terminal domain AMJ96_CH01721 PF07650 KH domain AMJ96_CH01722 PF00252 Ribosomal protein L16p/L10e AMJ96_CH01723 PF00831 Ribosomal L29 protein AMJ96_CH01724 PF00366 Ribosomal protein S17 AMJ96_CH01725 PF00238 Ribosomal protein L14p/L23e AMJ96_CH01726 PF00467 KOW motif AMJ96_CH01726 PF17136 AMJ96_CH01726 AMJ96_CH01727 PF00281 Ribosomal protein L5 AMJ96_CH01727 PF00673 ribosomal L5P family C-terminus AMJ96_CH01728 PF00253 Ribosomal protein S14p/S29e AMJ96_CH01729 PF00410 Ribosomal protein S8 AMJ96_CH01730 PF00347 Ribosomal protein L6 AMJ96_CH01731 PF00861 Ribosomal L18p/L5e family AMJ96_CH01732 PF00333 Ribosomal protein S5, N-terminal domain AMJ96_CH01732 PF03719 Ribosomal protein S5, C-terminal domain AMJ96_CH01733 PF00327 Ribosomal protein L30p/L7e AMJ96_CH01734 PF00828 Ribosomal protein L18e/L15 AMJ96_CH01736 PF00344 SecY translocase AMJ96_CH01737 PF00406 Adenylate kinase AMJ96_CH01737 PF05191 Adenylate kinase, active site lid AMJ96_CH01738 PF00416 Ribosomal protein S13/S18 AMJ96_CH01740 PF00411 Ribosomal protein S11 AMJ96_CH01742 PF01000 RNA polymerase Rpb3/RpoA insert domain AMJ96_CH01742 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMJ96_CH01742 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMJ96_CH01743 PF01196 Ribosomal protein L17 AMJ96_CH01744 PF10990 AMJ96_CH01744 AMJ96_CH01745 PF01794 AMJ96_CH01745 AMJ96_CH01746 PF00174 Oxidoreductase molybdopterin binding domain AMJ96_CH01747 PF00920 Dehydratase family AMJ96_CH01749 PF06803 AMJ96_CH01749 AMJ96_CH01750 PF13180 PDZ domain AMJ96_CH01750 PF13365 Trypsin-like peptidase domain AMJ96_CH01751 PF05496 Holliday junction DNA helicase ruvB N-terminus AMJ96_CH01751 PF12002 MgsA AAA+ ATPase C terminal AMJ96_CH01751 PF16193 AMJ96_CH01751 AMJ96_CH01752 PF08980 Domain of unknown function (DUF1883) AMJ96_CH01754 PF02558 Ketopantoate reductase PanE/ApbA AMJ96_CH01754 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMJ96_CH01755 PF00106 short chain dehydrogenase AMJ96_CH01756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01756 PF03466 LysR substrate binding domain AMJ96_CH01757 PF05014 Nucleoside 2-deoxyribosyltransferase AMJ96_CH01758 PF07859 alpha/beta hydrolase fold AMJ96_CH01759 PF02627 Carboxymuconolactone decarboxylase family AMJ96_CH01760 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH01760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH01760 PF12860 AMJ96_CH01760 AMJ96_CH01761 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH01761 PF13377 Periplasmic binding protein-like domain AMJ96_CH01762 PF01144 Coenzyme A transferase AMJ96_CH01763 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_CH01764 PF00171 Aldehyde dehydrogenase family AMJ96_CH01765 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH01766 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01767 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01768 PF00005 ABC transporter AMJ96_CH01769 PF00732 GMC oxidoreductase AMJ96_CH01769 PF05199 GMC oxidoreductase AMJ96_CH01770 PF00732 GMC oxidoreductase AMJ96_CH01770 PF05199 GMC oxidoreductase AMJ96_CH01771 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH01771 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH01772 PF00890 FAD binding domain AMJ96_CH01775 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH01778 PF00072 Response regulator receiver domain AMJ96_CH01778 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH01779 PF07730 Histidine kinase AMJ96_CH01781 PF13649 Methyltransferase domain AMJ96_CH01783 PF06823 AMJ96_CH01783 AMJ96_CH01785 PF07886 AMJ96_CH01785 AMJ96_CH01788 PF01471 Putative peptidoglycan binding domain AMJ96_CH01788 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH01789 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMJ96_CH01790 PF01037 AsnC family AMJ96_CH01790 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH01791 PF01037 AsnC family AMJ96_CH01791 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH01792 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01792 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AMJ96_CH01793 PF04209 homogentisate 1,2-dioxygenase AMJ96_CH01794 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH01795 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_CH01795 PF14497 Glutathione S-transferase, C-terminal domain AMJ96_CH01796 PF08670 AMJ96_CH01796 AMJ96_CH01798 PF01734 Patatin-like phospholipase AMJ96_CH01800 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH01800 PF00561 alpha/beta hydrolase fold AMJ96_CH01800 PF03704 Bacterial transcriptional activator domain AMJ96_CH01802 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH01803 PF02867 Ribonucleotide reductase, barrel domain AMJ96_CH01803 PF08471 AMJ96_CH01803 AMJ96_CH01806 PF00156 Phosphoribosyl transferase domain AMJ96_CH01807 PF00582 Universal stress protein family AMJ96_CH01808 PF00994 Probable molybdopterin binding domain AMJ96_CH01810 PF04892 AMJ96_CH01810 AMJ96_CH01811 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01811 PF00585 C-terminal regulatory domain of Threonine dehydratase AMJ96_CH01812 PF10115 AMJ96_CH01812 AMJ96_CH01813 PF00990 GGDEF domain AMJ96_CH01814 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH01815 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01816 PF02525 Flavodoxin-like fold AMJ96_CH01817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01817 PF03466 LysR substrate binding domain AMJ96_CH01818 PF00149 Calcineurin-like phosphoesterase AMJ96_CH01818 PF02872 5'-nucleotidase, C-terminal domain AMJ96_CH01819 PF07238 PilZ domain AMJ96_CH01820 PF00892 EamA-like transporter family AMJ96_CH01821 PF01037 AsnC family AMJ96_CH01821 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH01822 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_CH01822 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_CH01823 PF06718 AMJ96_CH01823 AMJ96_CH01825 PF00581 Rhodanese-like domain AMJ96_CH01826 PF01411 tRNA synthetases class II (A) AMJ96_CH01826 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH01827 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH01828 PF12973 ChrR Cupin-like domain AMJ96_CH01829 PF00106 short chain dehydrogenase AMJ96_CH01831 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH01832 PF00384 Molybdopterin oxidoreductase AMJ96_CH01832 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH01832 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_CH01832 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH01833 PF13806 Rieske-like [2Fe-2S] domain AMJ96_CH01834 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJ96_CH01834 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJ96_CH01834 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_CH01834 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01835 PF07690 Major Facilitator Superfamily AMJ96_CH01836 PF13379 NMT1-like family AMJ96_CH01837 PF00072 Response regulator receiver domain AMJ96_CH01837 PF03861 ANTAR domain AMJ96_CH01838 PF00578 AhpC/TSA family AMJ96_CH01838 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMJ96_CH01839 PF01464 Transglycosylase SLT domain AMJ96_CH01840 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH01841 PF05161 MOFRL family AMJ96_CH01841 PF13660 Domain of unknown function (DUF4147) AMJ96_CH01843 PF04120 AMJ96_CH01843 AMJ96_CH01844 PF04120 AMJ96_CH01844 AMJ96_CH01849 PF05532 CsbD-like AMJ96_CH01852 PF09656 AMJ96_CH01852 AMJ96_CH01854 PF13619 AMJ96_CH01854 AMJ96_CH01857 PF04116 AMJ96_CH01857 AMJ96_CH01859 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMJ96_CH01860 PF10691 AMJ96_CH01860 AMJ96_CH01861 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH01861 PF08264 Anticodon-binding domain of tRNA AMJ96_CH01861 PF10458 Valyl tRNA synthetase tRNA binding arm AMJ96_CH01862 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMJ96_CH01864 PF08238 Sel1 repeat AMJ96_CH01865 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH01866 PF01521 Iron-sulphur cluster biosynthesis AMJ96_CH01867 PF01966 HD domain AMJ96_CH01867 PF13286 Phosphohydrolase-associated domain AMJ96_CH01868 PF00750 tRNA synthetases class I (R) AMJ96_CH01868 PF03485 Arginyl tRNA synthetase N terminal domain AMJ96_CH01868 PF05746 DALR anticodon binding domain AMJ96_CH01869 PF05036 Sporulation related domain AMJ96_CH01870 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_CH01871 PF02616 ScpA/B protein AMJ96_CH01872 PF04079 Putative transcriptional regulators (Ypuh-like) AMJ96_CH01873 PF02416 mttA/Hcf106 family AMJ96_CH01874 PF02416 mttA/Hcf106 family AMJ96_CH01875 PF00902 Sec-independent protein translocase protein (TatC) AMJ96_CH01876 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH01876 PF02403 Seryl-tRNA synthetase N-terminal domain AMJ96_CH01877 PF01975 Survival protein SurE AMJ96_CH01878 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMJ96_CH01879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH01879 PF03466 LysR substrate binding domain AMJ96_CH01880 PF13564 AMJ96_CH01880 AMJ96_CH01882 PF00296 Luciferase-like monooxygenase AMJ96_CH01883 PF01476 LysM domain AMJ96_CH01883 PF01551 Peptidase family M23 AMJ96_CH01884 PF05673 Protein of unknown function (DUF815) AMJ96_CH01885 PF02699 Preprotein translocase subunit AMJ96_CH01886 PF02355 Protein export membrane protein AMJ96_CH01886 PF07549 SecD/SecF GG Motif AMJ96_CH01887 PF04430 Protein of unknown function (DUF498/DUF598) AMJ96_CH01888 PF00494 Squalene/phytoene synthase AMJ96_CH01890 PF01134 Glucose inhibited division protein A AMJ96_CH01891 PF06568 AMJ96_CH01891 AMJ96_CH01892 PF06568 AMJ96_CH01892 AMJ96_CH01895 PF09925 AMJ96_CH01895 AMJ96_CH01896 PF14345 AMJ96_CH01896 AMJ96_CH01899 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJ96_CH01899 PF05697 Bacterial trigger factor protein (TF) AMJ96_CH01899 PF05698 Bacterial trigger factor protein (TF) C-terminus AMJ96_CH01900 PF12680 SnoaL-like domain AMJ96_CH01901 PF04055 Radical SAM superfamily AMJ96_CH01902 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH01903 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH01903 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH01904 PF01070 FMN-dependent dehydrogenase AMJ96_CH01906 PF04002 RadC-like JAB domain AMJ96_CH01907 PF00557 Metallopeptidase family M24 AMJ96_CH01908 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH01911 PF03652 Uncharacterised protein family (UPF0081) AMJ96_CH01912 PF13483 Beta-lactamase superfamily domain AMJ96_CH01913 PF02686 Glu-tRNAGln amidotransferase C subunit AMJ96_CH01914 PF01425 Amidase AMJ96_CH01915 PF00583 Acetyltransferase (GNAT) family AMJ96_CH01918 PF15648 AMJ96_CH01918 AMJ96_CH01920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH01921 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH01922 PF06961 AMJ96_CH01922 AMJ96_CH01923 PF02637 GatB domain AMJ96_CH01923 PF02934 GatB/GatE catalytic domain AMJ96_CH01924 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH01925 PF13508 Acetyltransferase (GNAT) domain AMJ96_CH01926 PF05071 AMJ96_CH01926 AMJ96_CH01927 PF09923 AMJ96_CH01927 AMJ96_CH01928 PF09935 AMJ96_CH01928 AMJ96_CH01929 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMJ96_CH01930 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMJ96_CH01930 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH01930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH01931 PF00364 Biotin-requiring enzyme AMJ96_CH01932 PF01220 Dehydroquinase class II AMJ96_CH01933 PF01323 DSBA-like thioredoxin domain AMJ96_CH01934 PF00155 Aminotransferase class I and II AMJ96_CH01935 PF10908 AMJ96_CH01935 AMJ96_CH01936 PF07167 AMJ96_CH01936 AMJ96_CH01938 PF00155 Aminotransferase class I and II AMJ96_CH01939 PF00742 Homoserine dehydrogenase AMJ96_CH01939 PF01842 ACT domain AMJ96_CH01939 PF03447 Homoserine dehydrogenase, NAD binding domain AMJ96_CH01941 PF01368 DHH family AMJ96_CH01941 PF02272 DHHA1 domain AMJ96_CH01945 PF08291 Peptidase M15 AMJ96_CH01946 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH01947 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH01948 PF02643 Uncharacterized ACR, COG1430 AMJ96_CH01951 PF04800 ETC complex I subunit conserved region AMJ96_CH01954 PF13229 Right handed beta helix region AMJ96_CH01958 PF00005 ABC transporter AMJ96_CH01959 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01960 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH01961 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH01962 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_CH01963 PF01494 FAD binding domain AMJ96_CH01963 PF13450 NAD(P)-binding Rossmann-like domain AMJ96_CH01964 PF10276 Zinc-finger domain AMJ96_CH01965 PF00561 alpha/beta hydrolase fold AMJ96_CH01966 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01966 PF06426 Serine acetyltransferase, N-terminal AMJ96_CH01967 PF11324 AMJ96_CH01967 AMJ96_CH01968 PF09361 AMJ96_CH01968 AMJ96_CH01969 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH01970 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH01970 PF02861 Clp amino terminal domain AMJ96_CH01970 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH01970 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH01971 PF01230 HIT domain AMJ96_CH01972 PF04339 AMJ96_CH01972 AMJ96_CH01973 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_CH01974 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMJ96_CH01975 PF08904 AMJ96_CH01975 AMJ96_CH01976 PF05816 AMJ96_CH01976 AMJ96_CH01977 PF13531 Bacterial extracellular solute-binding protein AMJ96_CH01977 PF13768 von Willebrand factor type A domain AMJ96_CH01978 PF10112 AMJ96_CH01978 AMJ96_CH01979 PF13531 Bacterial extracellular solute-binding protein AMJ96_CH01981 PF00318 Ribosomal protein S2 AMJ96_CH01982 PF00889 Elongation factor TS AMJ96_CH01983 PF00696 Amino acid kinase family AMJ96_CH01984 PF01765 Ribosome recycling factor AMJ96_CH01985 PF01255 Putative undecaprenyl diphosphate synthase AMJ96_CH01986 PF01148 Cytidylyltransferase family AMJ96_CH01987 PF02163 Peptidase family M50 AMJ96_CH01987 PF13180 PDZ domain AMJ96_CH01988 PF01103 Surface antigen AMJ96_CH01988 PF07244 Surface antigen variable number repeat AMJ96_CH01989 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01989 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMJ96_CH01990 PF07977 FabA-like domain AMJ96_CH01991 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH01991 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMJ96_CH01992 PF06230 Protein of unknown function (DUF1009) AMJ96_CH01993 PF02684 AMJ96_CH01993 AMJ96_CH01994 PF00285 Citrate synthase AMJ96_CH01995 PF03772 AMJ96_CH01995 AMJ96_CH01995 PF13567 AMJ96_CH01995 AMJ96_CH01996 PF00717 Peptidase S24-like AMJ96_CH01996 PF01726 LexA DNA binding domain AMJ96_CH01998 PF13468 Glyoxalase-like domain AMJ96_CH01999 PF00793 DAHP synthetase I family AMJ96_CH02000 PF00113 Enolase, C-terminal TIM barrel domain AMJ96_CH02000 PF03952 Enolase, N-terminal domain AMJ96_CH02001 PF04977 Septum formation initiator AMJ96_CH02002 PF00676 Dehydrogenase E1 component AMJ96_CH02003 PF00364 Biotin-requiring enzyme AMJ96_CH02003 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH02003 PF02780 Transketolase, C-terminal domain AMJ96_CH02004 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_CH02004 PF00364 Biotin-requiring enzyme AMJ96_CH02004 PF02817 e3 binding domain AMJ96_CH02005 PF13472 GDSL-like Lipase/Acylhydrolase family AMJ96_CH02006 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02007 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH02007 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02008 PF04226 AMJ96_CH02008 AMJ96_CH02009 PF04226 AMJ96_CH02009 AMJ96_CH02010 PF04055 Radical SAM superfamily AMJ96_CH02010 PF16881 AMJ96_CH02010 AMJ96_CH02012 PF03364 Polyketide cyclase / dehydrase and lipid transport AMJ96_CH02013 PF02464 Competence-damaged protein AMJ96_CH02014 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMJ96_CH02014 PF02542 YgbB family AMJ96_CH02015 PF01207 Dihydrouridine synthase (Dus) AMJ96_CH02016 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02016 PF00989 PAS fold AMJ96_CH02016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02017 PF00072 Response regulator receiver domain AMJ96_CH02017 PF00158 Sigma-54 interaction domain AMJ96_CH02017 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH02018 PF01593 Flavin containing amine oxidoreductase AMJ96_CH02019 PF12973 ChrR Cupin-like domain AMJ96_CH02020 PF00107 Zinc-binding dehydrogenase AMJ96_CH02020 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02022 PF03466 LysR substrate binding domain AMJ96_CH02023 PF07690 Major Facilitator Superfamily AMJ96_CH02024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02024 PF03466 LysR substrate binding domain AMJ96_CH02025 PF00155 Aminotransferase class I and II AMJ96_CH02026 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02027 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02028 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02029 PF00005 ABC transporter AMJ96_CH02030 PF13462 Thioredoxin AMJ96_CH02031 PF00248 Aldo/keto reductase family AMJ96_CH02032 PF13458 Periplasmic binding protein AMJ96_CH02033 PF02653 AMJ96_CH02033 AMJ96_CH02034 PF02653 AMJ96_CH02034 AMJ96_CH02035 PF00005 ABC transporter AMJ96_CH02035 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH02036 PF00005 ABC transporter AMJ96_CH02037 PF00155 Aminotransferase class I and II AMJ96_CH02038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02038 PF03466 LysR substrate binding domain AMJ96_CH02039 PF01968 Hydantoinase/oxoprolinase AMJ96_CH02039 PF05378 AMJ96_CH02039 AMJ96_CH02040 PF02538 AMJ96_CH02040 AMJ96_CH02041 PF00106 short chain dehydrogenase AMJ96_CH02042 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH02043 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02043 PF00989 PAS fold AMJ96_CH02043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02044 PF00072 Response regulator receiver domain AMJ96_CH02044 PF00158 Sigma-54 interaction domain AMJ96_CH02044 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH02045 PF01063 Aminotransferase class IV AMJ96_CH02046 PF17209 AMJ96_CH02046 AMJ96_CH02047 PF01926 50S ribosome-binding GTPase AMJ96_CH02047 PF13167 AMJ96_CH02047 AMJ96_CH02047 PF16360 AMJ96_CH02047 AMJ96_CH02048 PF03819 MazG nucleotide pyrophosphohydrolase domain AMJ96_CH02049 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJ96_CH02050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH02050 PF10414 Sirohaem synthase dimerisation region AMJ96_CH02050 PF13241 Putative NAD(P)-binding AMJ96_CH02051 PF11011 AMJ96_CH02051 AMJ96_CH02052 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJ96_CH02052 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJ96_CH02053 PF06073 AMJ96_CH02053 AMJ96_CH02054 PF01494 FAD binding domain AMJ96_CH02055 PF03547 AMJ96_CH02055 AMJ96_CH02056 PF02683 AMJ96_CH02056 AMJ96_CH02064 PF00565 Staphylococcal nuclease homologue AMJ96_CH02065 PF01936 NYN domain AMJ96_CH02066 PF07676 WD40-like Beta Propeller Repeat AMJ96_CH02070 PF13643 AMJ96_CH02070 AMJ96_CH02071 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH02073 PF01494 FAD binding domain AMJ96_CH02075 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02076 PF07883 Cupin domain AMJ96_CH02077 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02078 PF00005 ABC transporter AMJ96_CH02078 PF00664 ABC transporter transmembrane region AMJ96_CH02079 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJ96_CH02079 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJ96_CH02081 PF06169 Protein of unknown function (DUF982) AMJ96_CH02082 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02082 PF14026 Protein of unknown function (DUF4242) AMJ96_CH02083 PF06169 Protein of unknown function (DUF982) AMJ96_CH02086 PF12680 SnoaL-like domain AMJ96_CH02087 PF00106 short chain dehydrogenase AMJ96_CH02088 PF03928 Domain of unknown function (DUF336) AMJ96_CH02089 PF12833 Helix-turn-helix domain AMJ96_CH02091 PF01042 Endoribonuclease L-PSP AMJ96_CH02092 PF02525 Flavodoxin-like fold AMJ96_CH02093 PF01565 FAD binding domain AMJ96_CH02094 PF07969 Amidohydrolase family AMJ96_CH02095 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02096 PF00005 ABC transporter AMJ96_CH02097 PF09084 NMT1/THI5 like AMJ96_CH02098 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02098 PF03466 LysR substrate binding domain AMJ96_CH02099 PF02633 Creatinine amidohydrolase AMJ96_CH02100 PF11158 AMJ96_CH02100 AMJ96_CH02101 PF06283 Trehalose utilisation AMJ96_CH02102 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH02103 PF00480 ROK family AMJ96_CH02103 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH02104 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02105 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02106 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02107 PF00005 ABC transporter AMJ96_CH02107 PF08402 TOBE domain AMJ96_CH02108 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02109 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02109 PF07729 FCD domain AMJ96_CH02110 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02111 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH02112 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02113 PF00005 ABC transporter AMJ96_CH02114 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH02115 PF03786 D-mannonate dehydratase (UxuA) AMJ96_CH02116 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02116 PF07729 FCD domain AMJ96_CH02117 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH02118 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02119 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02119 PF12911 AMJ96_CH02119 AMJ96_CH02120 PF00005 ABC transporter AMJ96_CH02121 PF00005 ABC transporter AMJ96_CH02122 PF03358 NADPH-dependent FMN reductase AMJ96_CH02123 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH02123 PF13377 Periplasmic binding protein-like domain AMJ96_CH02125 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02126 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02127 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02128 PF00005 ABC transporter AMJ96_CH02128 PF08402 TOBE domain AMJ96_CH02131 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH02132 PF16576 AMJ96_CH02132 AMJ96_CH02133 PF00005 ABC transporter AMJ96_CH02134 PF02687 AMJ96_CH02134 AMJ96_CH02134 PF12704 MacB-like periplasmic core domain AMJ96_CH02135 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02135 PF07729 FCD domain AMJ96_CH02136 PF00970 Oxidoreductase FAD-binding domain AMJ96_CH02139 PF00107 Zinc-binding dehydrogenase AMJ96_CH02139 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02140 PF00005 ABC transporter AMJ96_CH02141 PF02653 AMJ96_CH02141 AMJ96_CH02142 PF02653 AMJ96_CH02142 AMJ96_CH02143 PF02608 Basic membrane protein AMJ96_CH02144 PF13407 Periplasmic binding protein domain AMJ96_CH02145 PF00005 ABC transporter AMJ96_CH02146 PF02653 AMJ96_CH02146 AMJ96_CH02147 PF02653 AMJ96_CH02147 AMJ96_CH02148 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02148 PF07729 FCD domain AMJ96_CH02149 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH02149 PF12804 MobA-like NTP transferase domain AMJ96_CH02149 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH02150 PF01380 SIS domain AMJ96_CH02150 PF13522 Glutamine amidotransferase domain AMJ96_CH02151 PF04367 AMJ96_CH02151 AMJ96_CH02152 PF00270 DEAD/DEAH box helicase AMJ96_CH02152 PF00271 Helicase conserved C-terminal domain AMJ96_CH02152 PF17191 AMJ96_CH02152 AMJ96_CH02153 PF03937 Flavinator of succinate dehydrogenase AMJ96_CH02154 PF00270 DEAD/DEAH box helicase AMJ96_CH02154 PF00271 Helicase conserved C-terminal domain AMJ96_CH02154 PF02559 CarD-like/TRCF domain AMJ96_CH02154 PF03461 TRCF domain AMJ96_CH02155 PF02566 OsmC-like protein AMJ96_CH02156 PF04229 GrpB protein AMJ96_CH02157 PF01323 DSBA-like thioredoxin domain AMJ96_CH02158 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH02159 PF06776 Invasion associated locus B (IalB) protein AMJ96_CH02160 PF08755 Hemimethylated DNA-binding protein YccV like AMJ96_CH02161 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH02161 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH02162 PF00543 Nitrogen regulatory protein P-II AMJ96_CH02163 PF01256 Carbohydrate kinase AMJ96_CH02163 PF03853 YjeF-related protein N-terminus AMJ96_CH02164 PF01904 Protein of unknown function DUF72 AMJ96_CH02165 PF00005 ABC transporter AMJ96_CH02166 PF00436 Single-strand binding protein family AMJ96_CH02167 PF10754 AMJ96_CH02167 AMJ96_CH02168 PF01914 AMJ96_CH02168 AMJ96_CH02169 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJ96_CH02169 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJ96_CH02170 PF05598 AMJ96_CH02170 AMJ96_CH02170 PF13751 AMJ96_CH02170 AMJ96_CH02174 PF01467 Cytidylyltransferase AMJ96_CH02175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJ96_CH02176 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJ96_CH02177 PF02547 Queuosine biosynthesis protein AMJ96_CH02178 PF01702 Queuine tRNA-ribosyltransferase AMJ96_CH02179 PF16156 AMJ96_CH02179 AMJ96_CH02180 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH02180 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH02181 PF01638 HxlR-like helix-turn-helix AMJ96_CH02182 PF00293 NUDIX domain AMJ96_CH02183 PF00459 Inositol monophosphatase family AMJ96_CH02184 PF00005 ABC transporter AMJ96_CH02184 PF08402 TOBE domain AMJ96_CH02185 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02186 PF13343 Bacterial extracellular solute-binding protein AMJ96_CH02187 PF13343 Bacterial extracellular solute-binding protein AMJ96_CH02188 PF00072 Response regulator receiver domain AMJ96_CH02188 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02193 PF08445 FR47-like protein AMJ96_CH02194 PF13181 Tetratricopeptide repeat AMJ96_CH02195 PF00578 AhpC/TSA family AMJ96_CH02196 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02196 PF12773 AMJ96_CH02196 AMJ96_CH02196 PF13191 AAA ATPase domain AMJ96_CH02196 PF13424 Tetratricopeptide repeat AMJ96_CH02197 PF00005 ABC transporter AMJ96_CH02198 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02199 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02200 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02200 PF07729 FCD domain AMJ96_CH02201 PF00491 Arginase family AMJ96_CH02202 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02203 PF00202 Aminotransferase class-III AMJ96_CH02204 PF01019 Gamma-glutamyltranspeptidase AMJ96_CH02205 PF00171 Aldehyde dehydrogenase family AMJ96_CH02206 PF00563 EAL domain AMJ96_CH02206 PF00990 GGDEF domain AMJ96_CH02206 PF03924 CHASE domain AMJ96_CH02207 PF13551 Winged helix-turn helix AMJ96_CH02208 PF13523 Acetyltransferase (GNAT) domain AMJ96_CH02209 PF00924 Mechanosensitive ion channel AMJ96_CH02212 PF03741 AMJ96_CH02212 AMJ96_CH02213 PF12706 Beta-lactamase superfamily domain AMJ96_CH02214 PF01026 TatD related DNase AMJ96_CH02215 PF09334 tRNA synthetases class I (M) AMJ96_CH02216 PF01925 AMJ96_CH02216 AMJ96_CH02217 PF13177 DNA polymerase III, delta subunit AMJ96_CH02218 PF02223 Thymidylate kinase AMJ96_CH02219 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH02219 PF07943 Penicillin-binding protein 5, C-terminal domain AMJ96_CH02220 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMJ96_CH02223 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMJ96_CH02224 PF03831 PhnA protein AMJ96_CH02225 PF01841 Transglutaminase-like superfamily AMJ96_CH02226 PF01841 Transglutaminase-like superfamily AMJ96_CH02226 PF08379 AMJ96_CH02226 AMJ96_CH02229 PF04226 AMJ96_CH02229 AMJ96_CH02231 PF13145 PPIC-type PPIASE domain AMJ96_CH02231 PF13624 SurA N-terminal domain AMJ96_CH02232 PF00591 Glycosyl transferase family, a/b domain AMJ96_CH02232 PF02885 Glycosyl transferase family, helical bundle domain AMJ96_CH02233 PF00218 Indole-3-glycerol phosphate synthase AMJ96_CH02234 PF01967 MoaC family AMJ96_CH02235 PF00994 Probable molybdopterin binding domain AMJ96_CH02235 PF03453 MoeA N-terminal region (domain I and II) AMJ96_CH02235 PF03454 MoeA C-terminal region (domain IV) AMJ96_CH02237 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMJ96_CH02238 PF00270 DEAD/DEAH box helicase AMJ96_CH02238 PF00271 Helicase conserved C-terminal domain AMJ96_CH02238 PF03880 DbpA RNA binding domain AMJ96_CH02239 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02239 PF05226 AMJ96_CH02239 AMJ96_CH02240 PF04773 FecR protein AMJ96_CH02241 PF00285 Citrate synthase AMJ96_CH02242 PF00285 Citrate synthase AMJ96_CH02243 PF00117 Glutamine amidotransferase class-I AMJ96_CH02243 PF06418 CTP synthase N-terminus AMJ96_CH02244 PF03840 Preprotein translocase SecG subunit AMJ96_CH02245 PF00121 Triosephosphate isomerase AMJ96_CH02247 PF00204 DNA gyrase B AMJ96_CH02247 PF00986 DNA gyrase B subunit, carboxyl terminus AMJ96_CH02247 PF01751 Toprim domain AMJ96_CH02247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02248 PF13449 Esterase-like activity of phytase AMJ96_CH02249 PF01594 AMJ96_CH02249 AMJ96_CH02250 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02252 PF10098 AMJ96_CH02252 AMJ96_CH02253 PF01613 Flavin reductase like domain AMJ96_CH02254 PF00881 Nitroreductase family AMJ96_CH02256 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH02256 PF02824 TGS domain AMJ96_CH02256 PF03129 Anticodon binding domain AMJ96_CH02256 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH02257 PF08002 Protein of unknown function (DUF1697) AMJ96_CH02258 PF01809 AMJ96_CH02258 AMJ96_CH02259 PF01592 NifU-like N terminal domain AMJ96_CH02260 PF01227 GTP cyclohydrolase I AMJ96_CH02261 PF01502 Phosphoribosyl-AMP cyclohydrolase AMJ96_CH02262 PF01734 Patatin-like phospholipase AMJ96_CH02263 PF00571 CBS domain AMJ96_CH02264 PF01694 Rhomboid family AMJ96_CH02265 PF07310 AMJ96_CH02265 AMJ96_CH02266 PF07238 PilZ domain AMJ96_CH02267 PF00561 alpha/beta hydrolase fold AMJ96_CH02268 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AMJ96_CH02270 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH02270 PF05036 Sporulation related domain AMJ96_CH02272 PF07370 AMJ96_CH02272 AMJ96_CH02273 PF03313 AMJ96_CH02273 AMJ96_CH02273 PF03315 Serine dehydratase beta chain AMJ96_CH02274 PF04654 AMJ96_CH02274 AMJ96_CH02275 PF07786 AMJ96_CH02275 AMJ96_CH02276 PF13411 MerR HTH family regulatory protein AMJ96_CH02277 PF00571 CBS domain AMJ96_CH02277 PF01769 Divalent cation transporter AMJ96_CH02277 PF03448 MgtE intracellular N domain AMJ96_CH02278 PF01327 Polypeptide deformylase AMJ96_CH02279 PF04972 BON domain AMJ96_CH02281 PF04191 Phospholipid methyltransferase AMJ96_CH02283 PF03099 Biotin/lipoate A/B protein ligase family AMJ96_CH02284 PF00892 EamA-like transporter family AMJ96_CH02286 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMJ96_CH02286 PF00364 Biotin-requiring enzyme AMJ96_CH02286 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH02286 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH02287 PF00107 Zinc-binding dehydrogenase AMJ96_CH02287 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02288 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH02289 PF02639 AMJ96_CH02289 AMJ96_CH02290 PF00893 Small Multidrug Resistance protein AMJ96_CH02291 PF07681 AMJ96_CH02291 AMJ96_CH02292 PF01039 Carboxyl transferase domain AMJ96_CH02294 PF07542 ATP12 chaperone protein AMJ96_CH02295 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02296 PF00849 RNA pseudouridylate synthase AMJ96_CH02297 PF02537 AMJ96_CH02297 AMJ96_CH02299 PF04314 Protein of unknown function (DUF461) AMJ96_CH02299 PF07987 Domain of unkown function (DUF1775) AMJ96_CH02302 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH02302 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH02303 PF01597 Glycine cleavage H-protein AMJ96_CH02304 PF02347 Glycine cleavage system P-protein AMJ96_CH02305 PF01183 Glycosyl hydrolases family 25 AMJ96_CH02306 PF00460 Flagella basal body rod protein AMJ96_CH02306 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJ96_CH02308 PF01521 Iron-sulphur cluster biosynthesis AMJ96_CH02309 PF01883 Domain of unknown function DUF59 AMJ96_CH02310 PF00266 Aminotransferase class-V AMJ96_CH02311 PF01458 Uncharacterized protein family (UPF0051) AMJ96_CH02312 PF00005 ABC transporter AMJ96_CH02313 PF01541 GIY-YIG catalytic domain AMJ96_CH02314 PF01458 Uncharacterized protein family (UPF0051) AMJ96_CH02315 PF00266 Aminotransferase class-V AMJ96_CH02316 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMJ96_CH02317 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH02318 PF03702 Uncharacterised protein family (UPF0075) AMJ96_CH02319 PF00579 tRNA synthetases class I (W and Y) AMJ96_CH02321 PF00128 Alpha amylase, catalytic domain AMJ96_CH02322 PF13116 AMJ96_CH02322 AMJ96_CH02322 PF13502 AMJ96_CH02322 AMJ96_CH02323 PF00578 AhpC/TSA family AMJ96_CH02324 PF04305 AMJ96_CH02324 AMJ96_CH02325 PF01551 Peptidase family M23 AMJ96_CH02326 PF00270 DEAD/DEAH box helicase AMJ96_CH02326 PF00271 Helicase conserved C-terminal domain AMJ96_CH02327 PF00293 NUDIX domain AMJ96_CH02328 PF04993 TfoX N-terminal domain AMJ96_CH02329 PF01613 Flavin reductase like domain AMJ96_CH02330 PF13458 Periplasmic binding protein AMJ96_CH02331 PF00834 Ribulose-phosphate 3 epimerase family AMJ96_CH02332 PF10016 AMJ96_CH02332 AMJ96_CH02334 PF00206 Lyase AMJ96_CH02334 PF10397 Adenylosuccinate lyase C-terminus AMJ96_CH02336 PF04120 AMJ96_CH02336 AMJ96_CH02337 PF09955 AMJ96_CH02337 AMJ96_CH02338 PF06821 Serine hydrolase AMJ96_CH02339 PF00563 EAL domain AMJ96_CH02339 PF00990 GGDEF domain AMJ96_CH02339 PF08447 PAS fold AMJ96_CH02340 PF01259 SAICAR synthetase AMJ96_CH02341 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMJ96_CH02342 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMJ96_CH02343 PF13507 CobB/CobQ-like glutamine amidotransferase domain AMJ96_CH02345 PF06568 AMJ96_CH02345 AMJ96_CH02346 PF00155 Aminotransferase class I and II AMJ96_CH02346 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02347 PF09411 Lipid A 3-O-deacylase (PagL) AMJ96_CH02348 PF00586 AIR synthase related protein, N-terminal domain AMJ96_CH02348 PF02769 AIR synthase related protein, C-terminal domain AMJ96_CH02349 PF01722 BolA-like protein AMJ96_CH02350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH02350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH02351 PF01220 Dehydroquinase class II AMJ96_CH02353 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_CH02354 PF00005 ABC transporter AMJ96_CH02355 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02356 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02357 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02358 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH02359 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02359 PF07729 FCD domain AMJ96_CH02360 PF00775 Dioxygenase AMJ96_CH02360 PF04444 Catechol dioxygenase N terminus AMJ96_CH02362 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH02363 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02366 PF00462 Glutaredoxin AMJ96_CH02367 PF07690 Major Facilitator Superfamily AMJ96_CH02368 PF07690 Major Facilitator Superfamily AMJ96_CH02369 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH02370 PF00459 Inositol monophosphatase family AMJ96_CH02371 PF00459 Inositol monophosphatase family AMJ96_CH02372 PF01171 PP-loop family AMJ96_CH02373 PF04960 Glutaminase AMJ96_CH02374 PF00163 Ribosomal protein S4/S9 N-terminal domain AMJ96_CH02374 PF01479 S4 domain AMJ96_CH02376 PF01935 Domain of unknown function DUF87 AMJ96_CH02377 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH02378 PF00588 SpoU rRNA Methylase family AMJ96_CH02379 PF13515 AMJ96_CH02379 AMJ96_CH02381 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_CH02382 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02383 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH02384 PF06445 GyrI-like small molecule binding domain AMJ96_CH02384 PF12833 Helix-turn-helix domain AMJ96_CH02386 PF01411 tRNA synthetases class II (A) AMJ96_CH02386 PF02272 DHHA1 domain AMJ96_CH02386 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJ96_CH02387 PF00154 recA bacterial DNA recombination protein AMJ96_CH02388 PF00294 pfkB family carbohydrate kinase AMJ96_CH02389 PF04227 Indigoidine synthase A like protein AMJ96_CH02390 PF00072 Response regulator receiver domain AMJ96_CH02390 PF00989 PAS fold AMJ96_CH02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02390 PF13426 PAS domain AMJ96_CH02391 PF04347 AMJ96_CH02391 AMJ96_CH02392 PF06353 AMJ96_CH02392 AMJ96_CH02393 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMJ96_CH02394 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH02395 PF04317 AMJ96_CH02395 AMJ96_CH02396 PF05128 AMJ96_CH02396 AMJ96_CH02398 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMJ96_CH02399 PF02152 Dihydroneopterin aldolase AMJ96_CH02400 PF00809 Pterin binding enzyme AMJ96_CH02401 PF06037 AMJ96_CH02401 AMJ96_CH02403 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH02404 PF01627 Hpt domain AMJ96_CH02405 PF01442 Apolipoprotein A1/A4/E domain AMJ96_CH02406 PF00857 Isochorismatase family AMJ96_CH02407 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJ96_CH02408 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH02409 PF03886 Protein of unknown function (DUF330) AMJ96_CH02410 PF02470 AMJ96_CH02410 AMJ96_CH02411 PF00005 ABC transporter AMJ96_CH02412 PF02405 AMJ96_CH02412 AMJ96_CH02412 PF13466 STAS domain AMJ96_CH02413 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_CH02413 PF13378 Enolase C-terminal domain-like AMJ96_CH02414 PF12832 MFS_1 like family AMJ96_CH02415 PF12850 Calcineurin-like phosphoesterase superfamily domain AMJ96_CH02417 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH02418 PF01565 FAD binding domain AMJ96_CH02418 PF08031 Berberine and berberine like AMJ96_CH02419 PF00390 Malic enzyme, N-terminal domain AMJ96_CH02419 PF01515 Phosphate acetyl/butaryl transferase AMJ96_CH02419 PF03949 Malic enzyme, NAD binding domain AMJ96_CH02420 PF00075 RNase H AMJ96_CH02422 PF04542 Sigma-70 region 2 AMJ96_CH02423 PF03795 YCII-related domain AMJ96_CH02424 PF11064 AMJ96_CH02424 AMJ96_CH02425 PF00881 Nitroreductase family AMJ96_CH02428 PF00793 DAHP synthetase I family AMJ96_CH02429 PF07676 WD40-like Beta Propeller Repeat AMJ96_CH02430 PF00795 Carbon-nitrogen hydrolase AMJ96_CH02430 PF02540 NAD synthase AMJ96_CH02431 PF06210 AMJ96_CH02431 AMJ96_CH02432 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH02433 PF00005 ABC transporter AMJ96_CH02433 PF00664 ABC transporter transmembrane region AMJ96_CH02434 PF01474 Class-II DAHP synthetase family AMJ96_CH02435 PF13400 AMJ96_CH02435 AMJ96_CH02436 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH02436 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02438 PF00708 Acylphosphatase AMJ96_CH02439 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AMJ96_CH02440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMJ96_CH02441 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02442 PF01471 Putative peptidoglycan binding domain AMJ96_CH02442 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH02443 PF00206 Lyase AMJ96_CH02443 PF10415 Fumarase C C-terminus AMJ96_CH02445 PF05681 AMJ96_CH02445 AMJ96_CH02445 PF05683 Fumarase C-terminus AMJ96_CH02446 PF00990 GGDEF domain AMJ96_CH02447 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH02448 PF12697 Alpha/beta hydrolase family AMJ96_CH02449 PF01047 MarR family AMJ96_CH02450 PF06772 AMJ96_CH02450 AMJ96_CH02451 PF06155 Protein of unknown function (DUF971) AMJ96_CH02452 PF04055 Radical SAM superfamily AMJ96_CH02452 PF06463 Molybdenum Cofactor Synthesis C AMJ96_CH02452 PF13353 4Fe-4S single cluster domain AMJ96_CH02453 PF01209 ubiE/COQ5 methyltransferase family AMJ96_CH02454 PF01497 Periplasmic binding protein AMJ96_CH02455 PF01032 FecCD transport family AMJ96_CH02456 PF00005 ABC transporter AMJ96_CH02457 PF04198 Putative sugar-binding domain AMJ96_CH02457 PF12802 MarR family AMJ96_CH02458 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH02458 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH02459 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH02459 PF02780 Transketolase, C-terminal domain AMJ96_CH02460 PF00456 Transketolase, thiamine diphosphate binding domain AMJ96_CH02461 PF02653 AMJ96_CH02461 AMJ96_CH02462 PF13407 Periplasmic binding protein domain AMJ96_CH02463 PF00005 ABC transporter AMJ96_CH02464 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02465 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02466 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02467 PF00892 EamA-like transporter family AMJ96_CH02468 PF12804 MobA-like NTP transferase domain AMJ96_CH02469 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AMJ96_CH02470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02470 PF03466 LysR substrate binding domain AMJ96_CH02471 PF07883 Cupin domain AMJ96_CH02472 PF00248 Aldo/keto reductase family AMJ96_CH02473 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH02473 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH02474 PF02566 OsmC-like protein AMJ96_CH02475 PF00672 HAMP domain AMJ96_CH02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02476 PF00072 Response regulator receiver domain AMJ96_CH02476 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02477 PF00561 alpha/beta hydrolase fold AMJ96_CH02478 PF00578 AhpC/TSA family AMJ96_CH02478 PF02683 AMJ96_CH02478 AMJ96_CH02479 PF12697 Alpha/beta hydrolase family AMJ96_CH02480 PF00691 OmpA family AMJ96_CH02481 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH02482 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02483 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02484 PF06233 AMJ96_CH02484 AMJ96_CH02485 PF10028 AMJ96_CH02485 AMJ96_CH02486 PF13847 Methyltransferase domain AMJ96_CH02487 PF00043 Glutathione S-transferase, C-terminal domain AMJ96_CH02487 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH02488 PF12840 Helix-turn-helix domain AMJ96_CH02489 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH02490 PF08818 Domain of unknown function (DU1801) AMJ96_CH02491 PF08818 Domain of unknown function (DU1801) AMJ96_CH02493 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH02494 PF12840 Helix-turn-helix domain AMJ96_CH02495 PF00296 Luciferase-like monooxygenase AMJ96_CH02497 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH02497 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_CH02498 PF08713 DNA alkylation repair enzyme AMJ96_CH02500 PF00571 CBS domain AMJ96_CH02502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02502 PF03466 LysR substrate binding domain AMJ96_CH02503 PF02530 AMJ96_CH02503 AMJ96_CH02504 PF01037 AsnC family AMJ96_CH02504 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH02505 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH02506 PF00565 Staphylococcal nuclease homologue AMJ96_CH02507 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02508 PF01219 Prokaryotic diacylglycerol kinase AMJ96_CH02509 PF02277 Phosphoribosyltransferase AMJ96_CH02510 PF02654 AMJ96_CH02510 AMJ96_CH02511 PF13975 AMJ96_CH02511 AMJ96_CH02512 PF07690 Major Facilitator Superfamily AMJ96_CH02514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02514 PF03466 LysR substrate binding domain AMJ96_CH02515 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02516 PF01061 AMJ96_CH02516 AMJ96_CH02517 PF00005 ABC transporter AMJ96_CH02519 PF04616 Glycosyl hydrolases family 43 AMJ96_CH02520 PF00248 Aldo/keto reductase family AMJ96_CH02521 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH02522 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH02523 PF00703 Glycosyl hydrolases family 2 AMJ96_CH02524 PF00005 ABC transporter AMJ96_CH02524 PF08402 TOBE domain AMJ96_CH02525 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02526 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02527 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02528 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH02528 PF13377 Periplasmic binding protein-like domain AMJ96_CH02529 PF01548 AMJ96_CH02529 AMJ96_CH02529 PF02371 AMJ96_CH02529 AMJ96_CH02530 PF13529 Peptidase_C39 like family AMJ96_CH02531 PF01820 D-ala D-ala ligase N-terminus AMJ96_CH02531 PF07478 D-ala D-ala ligase C-terminus AMJ96_CH02532 PF13521 AAA domain AMJ96_CH02533 PF13649 Methyltransferase domain AMJ96_CH02534 PF01565 FAD binding domain AMJ96_CH02534 PF08031 Berberine and berberine like AMJ96_CH02535 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH02535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH02536 PF12833 Helix-turn-helix domain AMJ96_CH02538 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH02539 PF08448 PAS fold AMJ96_CH02540 PF03279 AMJ96_CH02540 AMJ96_CH02541 PF00107 Zinc-binding dehydrogenase AMJ96_CH02541 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02542 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH02542 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJ96_CH02543 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJ96_CH02544 PF07977 FabA-like domain AMJ96_CH02545 PF00550 Phosphopantetheine attachment site AMJ96_CH02546 PF00027 Cyclic nucleotide-binding domain AMJ96_CH02546 PF13545 Crp-like helix-turn-helix domain AMJ96_CH02547 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH02549 PF03186 AMJ96_CH02549 AMJ96_CH02550 PF00155 Aminotransferase class I and II AMJ96_CH02551 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH02551 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMJ96_CH02552 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_CH02553 PF01156 Inosine-uridine preferring nucleoside hydrolase AMJ96_CH02554 PF01890 Cobalamin synthesis G C-terminus AMJ96_CH02555 PF01925 AMJ96_CH02555 AMJ96_CH02556 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMJ96_CH02556 PF12557 Cob(I)alamin adenosyltransferase N terminal AMJ96_CH02557 PF02514 AMJ96_CH02557 AMJ96_CH02558 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02558 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH02559 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMJ96_CH02560 PF00654 Voltage gated chloride channel AMJ96_CH02561 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02562 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH02562 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMJ96_CH02563 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH02565 PF08085 AMJ96_CH02565 AMJ96_CH02566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02566 PF03466 LysR substrate binding domain AMJ96_CH02567 PF01810 AMJ96_CH02567 AMJ96_CH02568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02568 PF03466 LysR substrate binding domain AMJ96_CH02570 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_CH02571 PF02308 AMJ96_CH02571 AMJ96_CH02572 PF11450 AMJ96_CH02572 AMJ96_CH02573 PF09939 AMJ96_CH02573 AMJ96_CH02574 PF11168 AMJ96_CH02574 AMJ96_CH02575 PF13533 Biotin-lipoyl like AMJ96_CH02575 PF16576 AMJ96_CH02575 AMJ96_CH02578 PF00924 Mechanosensitive ion channel AMJ96_CH02580 PF01914 AMJ96_CH02580 AMJ96_CH02581 PF13565 AMJ96_CH02581 AMJ96_CH02582 PF13358 DDE superfamily endonuclease AMJ96_CH02583 PF02733 Dak1 domain AMJ96_CH02585 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH02585 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH02585 PF05524 PEP-utilising enzyme, N-terminal AMJ96_CH02586 PF00381 PTS HPr component phosphorylation site AMJ96_CH02587 PF03610 PTS system fructose IIA component AMJ96_CH02588 PF02734 DAK2 domain AMJ96_CH02589 PF02733 Dak1 domain AMJ96_CH02589 PF02734 DAK2 domain AMJ96_CH02590 PF00005 ABC transporter AMJ96_CH02591 PF00005 ABC transporter AMJ96_CH02591 PF08402 TOBE domain AMJ96_CH02593 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02594 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02595 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02596 PF07690 Major Facilitator Superfamily AMJ96_CH02597 PF00072 Response regulator receiver domain AMJ96_CH02597 PF07568 AMJ96_CH02597 AMJ96_CH02597 PF13581 Histidine kinase-like ATPase domain AMJ96_CH02598 PF06041 Bacterial protein of unknown function (DUF924) AMJ96_CH02599 PF00924 Mechanosensitive ion channel AMJ96_CH02601 PF07690 Major Facilitator Superfamily AMJ96_CH02602 PF03358 NADPH-dependent FMN reductase AMJ96_CH02603 PF03960 ArsC family AMJ96_CH02604 PF00230 Major intrinsic protein AMJ96_CH02605 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJ96_CH02606 PF12840 Helix-turn-helix domain AMJ96_CH02608 PF00072 Response regulator receiver domain AMJ96_CH02609 PF00072 Response regulator receiver domain AMJ96_CH02609 PF00990 GGDEF domain AMJ96_CH02610 PF01965 DJ-1/PfpI family AMJ96_CH02610 PF12833 Helix-turn-helix domain AMJ96_CH02612 PF12844 Helix-turn-helix domain AMJ96_CH02613 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH02613 PF01434 Peptidase family M41 AMJ96_CH02616 PF00565 Staphylococcal nuclease homologue AMJ96_CH02617 PF02586 Uncharacterised ACR, COG2135 AMJ96_CH02618 PF01068 ATP dependent DNA ligase domain AMJ96_CH02618 PF04679 ATP dependent DNA ligase C terminal region AMJ96_CH02624 PF01402 Ribbon-helix-helix protein, copG family AMJ96_CH02625 PF04752 AMJ96_CH02625 AMJ96_CH02626 PF14863 Alkyl sulfatase dimerisation AMJ96_CH02627 PF02705 AMJ96_CH02627 AMJ96_CH02628 PF00563 EAL domain AMJ96_CH02628 PF00990 GGDEF domain AMJ96_CH02629 PF11042 AMJ96_CH02629 AMJ96_CH02630 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02631 PF00723 Glycosyl hydrolases family 15 AMJ96_CH02632 PF00989 PAS fold AMJ96_CH02632 PF00990 GGDEF domain AMJ96_CH02632 PF08447 PAS fold AMJ96_CH02632 PF13426 PAS domain AMJ96_CH02633 PF14099 Polysaccharide lyase AMJ96_CH02634 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02635 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02635 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 AMJ96_CH02635 PF13432 Tetratricopeptide repeat AMJ96_CH02637 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02637 PF00536 SAM domain (Sterile alpha motif) AMJ96_CH02637 PF13191 AAA ATPase domain AMJ96_CH02638 PF14026 Protein of unknown function (DUF4242) AMJ96_CH02640 PF14281 AMJ96_CH02640 AMJ96_CH02654 PF02567 Phenazine biosynthesis-like protein AMJ96_CH02655 PF06169 Protein of unknown function (DUF982) AMJ96_CH02656 PF01566 AMJ96_CH02656 AMJ96_CH02658 PF00817 impB/mucB/samB family AMJ96_CH02659 PF02811 PHP domain AMJ96_CH02659 PF07733 Bacterial DNA polymerase III alpha subunit AMJ96_CH02659 PF14579 Helix-hairpin-helix motif AMJ96_CH02660 PF04480 Protein of unknown function (DUF559) AMJ96_CH02660 PF13087 AAA domain AMJ96_CH02660 PF13604 AAA domain AMJ96_CH02663 PF09823 AMJ96_CH02663 AMJ96_CH02665 PF03050 AMJ96_CH02665 AMJ96_CH02665 PF13005 AMJ96_CH02665 AMJ96_CH02665 PF13007 AMJ96_CH02665 AMJ96_CH02665 PF13817 AMJ96_CH02665 AMJ96_CH02666 PF05717 AMJ96_CH02666 AMJ96_CH02667 PF01527 Transposase AMJ96_CH02669 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_CH02670 PF00561 alpha/beta hydrolase fold AMJ96_CH02671 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH02671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02671 PF08447 PAS fold AMJ96_CH02672 PF00072 Response regulator receiver domain AMJ96_CH02672 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH02677 PF00665 Integrase core domain AMJ96_CH02677 PF13276 AMJ96_CH02677 AMJ96_CH02678 PF01527 Transposase AMJ96_CH02679 PF02265 S1/P1 Nuclease AMJ96_CH02680 PF14099 Polysaccharide lyase AMJ96_CH02681 PF13091 PLD-like domain AMJ96_CH02684 PF00665 Integrase core domain AMJ96_CH02685 PF13401 AAA domain AMJ96_CH02687 PF01527 Transposase AMJ96_CH02690 PF13358 DDE superfamily endonuclease AMJ96_CH02691 PF13565 AMJ96_CH02691 AMJ96_CH02692 PF01047 MarR family AMJ96_CH02693 PF00293 NUDIX domain AMJ96_CH02694 PF11294 AMJ96_CH02694 AMJ96_CH02695 PF02566 OsmC-like protein AMJ96_CH02696 PF13649 Methyltransferase domain AMJ96_CH02697 PF01494 FAD binding domain AMJ96_CH02698 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02698 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMJ96_CH02700 PF06904 AMJ96_CH02700 AMJ96_CH02701 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH02701 PF00672 HAMP domain AMJ96_CH02701 PF17200 AMJ96_CH02701 AMJ96_CH02702 PF03061 Thioesterase superfamily AMJ96_CH02704 PF07394 AMJ96_CH02704 AMJ96_CH02705 PF08811 AMJ96_CH02705 AMJ96_CH02706 PF08241 Methyltransferase domain AMJ96_CH02707 PF05368 NmrA-like family AMJ96_CH02708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02708 PF03466 LysR substrate binding domain AMJ96_CH02710 PF00072 Response regulator receiver domain AMJ96_CH02711 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH02712 PF13316 AMJ96_CH02712 AMJ96_CH02713 PF05988 AMJ96_CH02713 AMJ96_CH02714 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02715 PF05656 AMJ96_CH02715 AMJ96_CH02718 PF00271 Helicase conserved C-terminal domain AMJ96_CH02718 PF02151 UvrB/uvrC motif AMJ96_CH02718 PF04851 Type III restriction enzyme, res subunit AMJ96_CH02718 PF12344 Ultra-violet resistance protein B AMJ96_CH02721 PF02586 Uncharacterised ACR, COG2135 AMJ96_CH02722 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02723 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMJ96_CH02724 PF12883 Protein of unknown function (DUF3828) AMJ96_CH02725 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH02726 PF01207 Dihydrouridine synthase (Dus) AMJ96_CH02727 PF13180 PDZ domain AMJ96_CH02727 PF13365 Trypsin-like peptidase domain AMJ96_CH02728 PF00561 alpha/beta hydrolase fold AMJ96_CH02730 PF07886 AMJ96_CH02730 AMJ96_CH02731 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH02732 PF11769 AMJ96_CH02732 AMJ96_CH02733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02734 PF00072 Response regulator receiver domain AMJ96_CH02734 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH02736 PF01638 HxlR-like helix-turn-helix AMJ96_CH02737 PF01872 RibD C-terminal domain AMJ96_CH02739 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02741 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02742 PF13578 Methyltransferase domain AMJ96_CH02744 PF05661 AMJ96_CH02744 AMJ96_CH02745 PF01638 HxlR-like helix-turn-helix AMJ96_CH02746 PF13460 NADH(P)-binding AMJ96_CH02747 PF00764 Arginosuccinate synthase AMJ96_CH02749 PF09992 Predicted periplasmic protein (DUF2233) AMJ96_CH02750 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH02751 PF06983 3-demethylubiquinone-9 3-methyltransferase AMJ96_CH02753 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_CH02754 PF00583 Acetyltransferase (GNAT) family AMJ96_CH02757 PF02311 AraC-like ligand binding domain AMJ96_CH02757 PF12833 Helix-turn-helix domain AMJ96_CH02759 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMJ96_CH02762 PF00999 Sodium/hydrogen exchanger family AMJ96_CH02763 PF02705 AMJ96_CH02763 AMJ96_CH02764 PF00775 Dioxygenase AMJ96_CH02765 PF13229 Right handed beta helix region AMJ96_CH02766 PF13229 Right handed beta helix region AMJ96_CH02767 PF12704 MacB-like periplasmic core domain AMJ96_CH02768 PF02687 AMJ96_CH02768 AMJ96_CH02768 PF12704 MacB-like periplasmic core domain AMJ96_CH02769 PF00005 ABC transporter AMJ96_CH02770 PF16576 AMJ96_CH02770 AMJ96_CH02771 PF12833 Helix-turn-helix domain AMJ96_CH02772 PF01738 Dienelactone hydrolase family AMJ96_CH02773 PF03626 AMJ96_CH02773 AMJ96_CH02774 PF00510 Cytochrome c oxidase subunit III AMJ96_CH02775 PF00510 Cytochrome c oxidase subunit III AMJ96_CH02776 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_CH02777 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_CH02778 PF00034 Cytochrome c AMJ96_CH02779 PF03690 AMJ96_CH02779 AMJ96_CH02781 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH02781 PF04273 Putative phosphatase (DUF442) AMJ96_CH02783 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH02784 PF13563 2'-5' RNA ligase superfamily AMJ96_CH02786 PF00091 Tubulin/FtsZ family, GTPase domain AMJ96_CH02786 PF12327 FtsZ family, C-terminal domain AMJ96_CH02787 PF13560 Helix-turn-helix domain AMJ96_CH02788 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH02791 PF08592 AMJ96_CH02791 AMJ96_CH02795 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMJ96_CH02797 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH02798 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH02799 PF01965 DJ-1/PfpI family AMJ96_CH02800 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH02800 PF13407 Periplasmic binding protein domain AMJ96_CH02801 PF04116 AMJ96_CH02801 AMJ96_CH02802 PF00355 Rieske [2Fe-2S] domain AMJ96_CH02803 PF13407 Periplasmic binding protein domain AMJ96_CH02804 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02804 PF14759 Reductase C-terminal AMJ96_CH02806 PF00563 EAL domain AMJ96_CH02806 PF00990 GGDEF domain AMJ96_CH02808 PF08241 Methyltransferase domain AMJ96_CH02809 PF00672 HAMP domain AMJ96_CH02809 PF07228 Stage II sporulation protein E (SpoIIE) AMJ96_CH02813 PF03629 Domain of unknown function (DUF303) AMJ96_CH02815 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02817 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02817 PF13602 Zinc-binding dehydrogenase AMJ96_CH02818 PF13534 4Fe-4S dicluster domain AMJ96_CH02819 PF02449 Beta-galactosidase AMJ96_CH02819 PF08532 Beta-galactosidase trimerisation domain AMJ96_CH02819 PF08533 Beta-galactosidase C-terminal domain AMJ96_CH02820 PF00005 ABC transporter AMJ96_CH02820 PF08402 TOBE domain AMJ96_CH02821 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02822 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02823 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH02823 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMJ96_CH02824 PF00480 ROK family AMJ96_CH02824 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH02825 PF10041 AMJ96_CH02825 AMJ96_CH02826 PF07883 Cupin domain AMJ96_CH02827 PF13767 AMJ96_CH02827 AMJ96_CH02828 PF00892 EamA-like transporter family AMJ96_CH02829 PF00155 Aminotransferase class I and II AMJ96_CH02829 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02830 PF00072 Response regulator receiver domain AMJ96_CH02831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH02833 PF01548 AMJ96_CH02833 AMJ96_CH02833 PF02371 AMJ96_CH02833 AMJ96_CH02834 PF13360 PQQ-like domain AMJ96_CH02836 PF05988 AMJ96_CH02836 AMJ96_CH02838 PF00106 short chain dehydrogenase AMJ96_CH02839 PF00296 Luciferase-like monooxygenase AMJ96_CH02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02840 PF03466 LysR substrate binding domain AMJ96_CH02841 PF07690 Major Facilitator Superfamily AMJ96_CH02842 PF12840 Helix-turn-helix domain AMJ96_CH02843 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02846 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH02848 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMJ96_CH02850 PF06707 Protein of unknown function (DUF1194) AMJ96_CH02851 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02851 PF03466 LysR substrate binding domain AMJ96_CH02852 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH02853 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMJ96_CH02855 PF04773 FecR protein AMJ96_CH02855 PF14559 Tetratricopeptide repeat AMJ96_CH02856 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02856 PF05226 AMJ96_CH02856 AMJ96_CH02857 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02858 PF03729 AMJ96_CH02858 AMJ96_CH02859 PF13460 NADH(P)-binding AMJ96_CH02861 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_CH02862 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH02863 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMJ96_CH02866 PF07366 SnoaL-like polyketide cyclase AMJ96_CH02867 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AMJ96_CH02869 PF01475 Ferric uptake regulator family AMJ96_CH02870 PF00950 AMJ96_CH02870 AMJ96_CH02871 PF00005 ABC transporter AMJ96_CH02872 PF01297 Periplasmic solute binding protein family AMJ96_CH02873 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02873 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH02875 PF11776 Domain of unknown function (DUF3315) AMJ96_CH02876 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH02877 PF00571 CBS domain AMJ96_CH02877 PF01595 AMJ96_CH02877 AMJ96_CH02877 PF03471 Transporter associated domain AMJ96_CH02878 PF02417 AMJ96_CH02878 AMJ96_CH02879 PF00581 Rhodanese-like domain AMJ96_CH02879 PF09828 AMJ96_CH02879 AMJ96_CH02883 PF02567 Phenazine biosynthesis-like protein AMJ96_CH02885 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH02886 PF13827 AMJ96_CH02886 AMJ96_CH02887 PF00005 ABC transporter AMJ96_CH02887 PF08402 TOBE domain AMJ96_CH02888 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02889 PF13343 Bacterial extracellular solute-binding protein AMJ96_CH02890 PF12697 Alpha/beta hydrolase family AMJ96_CH02891 PF01047 MarR family AMJ96_CH02892 PF00248 Aldo/keto reductase family AMJ96_CH02893 PF00932 Lamin Tail Domain AMJ96_CH02893 PF10042 AMJ96_CH02893 AMJ96_CH02894 PF00155 Aminotransferase class I and II AMJ96_CH02895 PF01063 Aminotransferase class IV AMJ96_CH02897 PF05016 Plasmid stabilisation system protein AMJ96_CH02898 PF08241 Methyltransferase domain AMJ96_CH02899 PF09990 AMJ96_CH02899 AMJ96_CH02900 PF07995 Glucose / Sorbosone dehydrogenase AMJ96_CH02902 PF08003 Protein of unknown function (DUF1698) AMJ96_CH02904 PF01658 Myo-inositol-1-phosphate synthase AMJ96_CH02906 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term AMJ96_CH02906 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus AMJ96_CH02907 PF04230 AMJ96_CH02907 AMJ96_CH02908 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMJ96_CH02908 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMJ96_CH02909 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02909 PF14246 AefR-like transcriptional repressor, C-terminal region AMJ96_CH02911 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH02911 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH02912 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH02913 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_CH02914 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02915 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH02916 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH02917 PF00005 ABC transporter AMJ96_CH02917 PF08402 TOBE domain AMJ96_CH02918 PF04198 Putative sugar-binding domain AMJ96_CH02920 PF00535 Glycosyl transferase family 2 AMJ96_CH02921 PF06719 AMJ96_CH02921 AMJ96_CH02921 PF12833 Helix-turn-helix domain AMJ96_CH02922 PF00107 Zinc-binding dehydrogenase AMJ96_CH02922 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH02923 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH02923 PF00679 Elongation factor G C-terminus AMJ96_CH02923 PF03764 Elongation factor G, domain IV AMJ96_CH02923 PF14492 Elongation Factor G, domain II AMJ96_CH02924 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH02925 PF07886 AMJ96_CH02925 AMJ96_CH02926 PF01037 AsnC family AMJ96_CH02926 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH02927 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH02928 PF12802 MarR family AMJ96_CH02928 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH02929 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH02930 PF07690 Major Facilitator Superfamily AMJ96_CH02931 PF01638 HxlR-like helix-turn-helix AMJ96_CH02932 PF05368 NmrA-like family AMJ96_CH02933 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMJ96_CH02934 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH02934 PF13411 MerR HTH family regulatory protein AMJ96_CH02935 PF13538 UvrD-like helicase C-terminal domain AMJ96_CH02935 PF13604 AAA domain AMJ96_CH02936 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02936 PF03466 LysR substrate binding domain AMJ96_CH02937 PF02627 Carboxymuconolactone decarboxylase family AMJ96_CH02938 PF13460 NADH(P)-binding AMJ96_CH02939 PF07883 Cupin domain AMJ96_CH02940 PF00027 Cyclic nucleotide-binding domain AMJ96_CH02940 PF00924 Mechanosensitive ion channel AMJ96_CH02941 PF02082 Transcriptional regulator AMJ96_CH02942 PF03640 AMJ96_CH02942 AMJ96_CH02943 PF04542 Sigma-70 region 2 AMJ96_CH02943 PF08281 Sigma-70, region 4 AMJ96_CH02945 PF02211 Nitrile hydratase beta subunit AMJ96_CH02946 PF02211 Nitrile hydratase beta subunit AMJ96_CH02947 PF02979 Nitrile hydratase, alpha chain AMJ96_CH02948 PF13460 NADH(P)-binding AMJ96_CH02948 PF13781 AMJ96_CH02948 AMJ96_CH02949 PF10027 AMJ96_CH02949 AMJ96_CH02950 PF01810 AMJ96_CH02950 AMJ96_CH02951 PF00248 Aldo/keto reductase family AMJ96_CH02952 PF01842 ACT domain AMJ96_CH02952 PF10369 Small subunit of acetolactate synthase AMJ96_CH02953 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH02953 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH02953 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH02955 PF01935 Domain of unknown function DUF87 AMJ96_CH02956 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH02957 PF01810 AMJ96_CH02957 AMJ96_CH02958 PF00155 Aminotransferase class I and II AMJ96_CH02958 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH02959 PF01715 IPP transferase AMJ96_CH02960 PF12710 haloacid dehalogenase-like hydrolase AMJ96_CH02961 PF13180 PDZ domain AMJ96_CH02961 PF13365 Trypsin-like peptidase domain AMJ96_CH02962 PF01145 SPFH domain / Band 7 family AMJ96_CH02963 PF01145 SPFH domain / Band 7 family AMJ96_CH02963 PF12221 AMJ96_CH02963 AMJ96_CH02964 PF00186 Dihydrofolate reductase AMJ96_CH02965 PF00303 Thymidylate synthase AMJ96_CH02967 PF04386 Stringent starvation protein B AMJ96_CH02968 PF13770 AMJ96_CH02968 AMJ96_CH02969 PF13467 Ribbon-helix-helix domain AMJ96_CH02970 PF05170 AMJ96_CH02970 AMJ96_CH02970 PF13502 AMJ96_CH02970 AMJ96_CH02971 PF01565 FAD binding domain AMJ96_CH02971 PF02913 FAD linked oxidases, C-terminal domain AMJ96_CH02972 PF00248 Aldo/keto reductase family AMJ96_CH02973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH02973 PF03466 LysR substrate binding domain AMJ96_CH02974 PF05145 AMJ96_CH02974 AMJ96_CH02975 PF02311 AraC-like ligand binding domain AMJ96_CH02975 PF12833 Helix-turn-helix domain AMJ96_CH02976 PF09391 Protein of unknown function (DUF2000) AMJ96_CH02977 PF00691 OmpA family AMJ96_CH02977 PF13441 AMJ96_CH02977 AMJ96_CH02978 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH02978 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH02979 PF00873 AcrB/AcrD/AcrF family AMJ96_CH02980 PF16576 AMJ96_CH02980 AMJ96_CH02981 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH02982 PF04293 AMJ96_CH02982 AMJ96_CH02983 PF04285 AMJ96_CH02983 AMJ96_CH02984 PF06798 AMJ96_CH02984 AMJ96_CH02984 PF08298 PrkA AAA domain AMJ96_CH02985 PF06983 3-demethylubiquinone-9 3-methyltransferase AMJ96_CH02986 PF00580 UvrD/REP helicase N-terminal domain AMJ96_CH02986 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH02988 PF00857 Isochorismatase family AMJ96_CH02990 PF09932 AMJ96_CH02990 AMJ96_CH02991 PF03591 AMJ96_CH02991 AMJ96_CH02992 PF05437 AMJ96_CH02992 AMJ96_CH02993 PF00557 Metallopeptidase family M24 AMJ96_CH02993 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_CH02993 PF16188 AMJ96_CH02993 AMJ96_CH02993 PF16189 AMJ96_CH02993 AMJ96_CH02995 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMJ96_CH02996 PF02630 SCO1/SenC AMJ96_CH02997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH02998 PF01584 CheW-like domain AMJ96_CH02999 PF05981 AMJ96_CH02999 AMJ96_CH03000 PF00929 Exonuclease AMJ96_CH03001 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03002 PF00533 BRCA1 C Terminus (BRCT) domain AMJ96_CH03002 PF01653 NAD-dependent DNA ligase adenylation domain AMJ96_CH03002 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMJ96_CH03002 PF03120 NAD-dependent DNA ligase OB-fold domain AMJ96_CH03002 PF12826 Helix-hairpin-helix motif AMJ96_CH03004 PF02463 RecF/RecN/SMC N terminal domain AMJ96_CH03005 PF13525 Outer membrane lipoprotein AMJ96_CH03007 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMJ96_CH03008 PF00091 Tubulin/FtsZ family, GTPase domain AMJ96_CH03008 PF12327 FtsZ family, C-terminal domain AMJ96_CH03009 PF02491 SHS2 domain inserted in FTSA AMJ96_CH03009 PF14450 Cell division protein FtsA AMJ96_CH03010 PF03799 Cell division protein FtsQ AMJ96_CH03010 PF08478 POTRA domain, FtsQ-type AMJ96_CH03011 PF01820 D-ala D-ala ligase N-terminus AMJ96_CH03011 PF07478 D-ala D-ala ligase C-terminus AMJ96_CH03012 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03013 PF01565 FAD binding domain AMJ96_CH03013 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMJ96_CH03014 PF01225 Mur ligase family, catalytic domain AMJ96_CH03014 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03014 PF08245 Mur ligase middle domain AMJ96_CH03015 PF03033 Glycosyltransferase family 28 N-terminal domain AMJ96_CH03015 PF04101 Glycosyltransferase family 28 C-terminal domain AMJ96_CH03016 PF01098 AMJ96_CH03016 AMJ96_CH03017 PF08245 Mur ligase middle domain AMJ96_CH03018 PF00953 Glycosyl transferase family 4 AMJ96_CH03018 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMJ96_CH03019 PF01225 Mur ligase family, catalytic domain AMJ96_CH03019 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03019 PF08245 Mur ligase middle domain AMJ96_CH03020 PF01225 Mur ligase family, catalytic domain AMJ96_CH03020 PF02875 Mur ligase family, glutamate ligase domain AMJ96_CH03020 PF08245 Mur ligase middle domain AMJ96_CH03021 PF00905 Penicillin binding protein transpeptidase domain AMJ96_CH03021 PF03717 Penicillin-binding Protein dimerisation domain AMJ96_CH03023 PF01795 MraW methylase family AMJ96_CH03024 PF02381 MraZ protein AMJ96_CH03026 PF01266 FAD dependent oxidoreductase AMJ96_CH03027 PF01266 FAD dependent oxidoreductase AMJ96_CH03028 PF01464 Transglycosylase SLT domain AMJ96_CH03029 PF01471 Putative peptidoglycan binding domain AMJ96_CH03029 PF01510 N-acetylmuramoyl-L-alanine amidase AMJ96_CH03030 PF00226 DnaJ domain AMJ96_CH03030 PF05099 Tellurite resistance protein TerB AMJ96_CH03031 PF00365 Phosphofructokinase AMJ96_CH03032 PF01810 AMJ96_CH03032 AMJ96_CH03033 PF01464 Transglycosylase SLT domain AMJ96_CH03034 PF00144 Beta-lactamase AMJ96_CH03035 PF11899 AMJ96_CH03035 AMJ96_CH03036 PF13649 Methyltransferase domain AMJ96_CH03037 PF01183 Glycosyl hydrolases family 25 AMJ96_CH03038 PF01471 Putative peptidoglycan binding domain AMJ96_CH03038 PF13406 Transglycosylase SLT domain AMJ96_CH03039 PF00892 EamA-like transporter family AMJ96_CH03041 PF02219 Methylenetetrahydrofolate reductase AMJ96_CH03042 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH03042 PF08241 Methyltransferase domain AMJ96_CH03044 PF00005 ABC transporter AMJ96_CH03044 PF12848 ABC transporter AMJ96_CH03045 PF00445 Ribonuclease T2 family AMJ96_CH03046 PF12146 Putative lysophospholipase AMJ96_CH03047 PF00892 EamA-like transporter family AMJ96_CH03048 PF02515 CoA-transferase family III AMJ96_CH03049 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_CH03049 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_CH03049 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_CH03050 PF01042 Endoribonuclease L-PSP AMJ96_CH03051 PF04273 Putative phosphatase (DUF442) AMJ96_CH03052 PF14486 Domain of unknown function (DUF4432) AMJ96_CH03053 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH03054 PF07015 VirC1 protein AMJ96_CH03055 PF00465 Iron-containing alcohol dehydrogenase AMJ96_CH03056 PF00171 Aldehyde dehydrogenase family AMJ96_CH03057 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH03058 PF13520 Amino acid permease AMJ96_CH03059 PF05013 N-formylglutamate amidohydrolase AMJ96_CH03060 PF01380 SIS domain AMJ96_CH03060 PF01418 Helix-turn-helix domain, rpiR family AMJ96_CH03061 PF13343 Bacterial extracellular solute-binding protein AMJ96_CH03062 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03063 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03064 PF00005 ABC transporter AMJ96_CH03064 PF08402 TOBE domain AMJ96_CH03065 PF00005 ABC transporter AMJ96_CH03065 PF08402 TOBE domain AMJ96_CH03066 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03067 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03068 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03069 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03070 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMJ96_CH03071 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH03071 PF07702 UTRA domain AMJ96_CH03072 PF01850 PIN domain AMJ96_CH03073 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_CH03074 PF00809 Pterin binding enzyme AMJ96_CH03074 PF02310 B12 binding domain AMJ96_CH03074 PF02574 Homocysteine S-methyltransferase AMJ96_CH03074 PF02607 B12 binding domain AMJ96_CH03074 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMJ96_CH03075 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMJ96_CH03076 PF03928 Domain of unknown function (DUF336) AMJ96_CH03077 PF01613 Flavin reductase like domain AMJ96_CH03078 PF01177 Asp/Glu/Hydantoin racemase AMJ96_CH03079 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03080 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03081 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03082 PF00005 ABC transporter AMJ96_CH03082 PF08402 TOBE domain AMJ96_CH03083 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH03083 PF07729 FCD domain AMJ96_CH03084 PF13778 AMJ96_CH03084 AMJ96_CH03087 PF11154 AMJ96_CH03087 AMJ96_CH03089 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH03089 PF03472 Autoinducer binding domain AMJ96_CH03090 PF00765 Autoinducer synthetase AMJ96_CH03092 PF00072 Response regulator receiver domain AMJ96_CH03094 PF13676 TIR domain AMJ96_CH03097 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH03100 PF04402 Protein of unknown function (DUF541) AMJ96_CH03103 PF01894 Uncharacterised protein family UPF0047 AMJ96_CH03104 PF06037 AMJ96_CH03104 AMJ96_CH03106 PF04248 Domain of unknown function (DUF427) AMJ96_CH03107 PF03483 B3/4 domain AMJ96_CH03108 PF00892 EamA-like transporter family AMJ96_CH03109 PF02311 AraC-like ligand binding domain AMJ96_CH03109 PF12833 Helix-turn-helix domain AMJ96_CH03110 PF01636 Phosphotransferase enzyme family AMJ96_CH03112 PF06059 AMJ96_CH03112 AMJ96_CH03113 PF08734 AMJ96_CH03113 AMJ96_CH03114 PF00140 Sigma-70 factor, region 1 AMJ96_CH03114 PF03979 Sigma-70 factor, region 1 AMJ96_CH03114 PF04539 Sigma-70 region 3 AMJ96_CH03114 PF04542 Sigma-70 region 2 AMJ96_CH03114 PF04545 Sigma-70, region 4 AMJ96_CH03114 PF04546 Sigma-70, non-essential region AMJ96_CH03115 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_CH03116 PF00107 Zinc-binding dehydrogenase AMJ96_CH03116 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH03117 PF00155 Aminotransferase class I and II AMJ96_CH03118 PF00270 DEAD/DEAH box helicase AMJ96_CH03118 PF00271 Helicase conserved C-terminal domain AMJ96_CH03118 PF00570 HRDC domain AMJ96_CH03118 PF09382 RQC domain AMJ96_CH03118 PF16124 AMJ96_CH03118 AMJ96_CH03119 PF01807 CHC2 zinc finger AMJ96_CH03119 PF08275 DNA primase catalytic core, N-terminal domain AMJ96_CH03119 PF10410 DnaB-helicase binding domain of primase AMJ96_CH03119 PF13662 Toprim domain AMJ96_CH03121 PF09424 Yqey-like protein AMJ96_CH03122 PF00117 Glutamine amidotransferase class-I AMJ96_CH03122 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMJ96_CH03123 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03123 PF13432 Tetratricopeptide repeat AMJ96_CH03125 PF01554 MatE AMJ96_CH03126 PF07690 Major Facilitator Superfamily AMJ96_CH03127 PF00248 Aldo/keto reductase family AMJ96_CH03128 PF04228 AMJ96_CH03128 AMJ96_CH03129 PF00107 Zinc-binding dehydrogenase AMJ96_CH03129 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_CH03130 PF02142 MGS-like domain AMJ96_CH03130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH03130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMJ96_CH03131 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH03131 PF13566 AMJ96_CH03131 AMJ96_CH03133 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_CH03133 PF03449 Transcription elongation factor, N-terminal AMJ96_CH03134 PF00534 Glycosyl transferases group 1 AMJ96_CH03135 PF00375 Sodium:dicarboxylate symporter family AMJ96_CH03136 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03137 PF00072 Response regulator receiver domain AMJ96_CH03137 PF00158 Sigma-54 interaction domain AMJ96_CH03137 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03138 PF01037 AsnC family AMJ96_CH03138 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH03139 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03140 PF03466 LysR substrate binding domain AMJ96_CH03143 PF12840 Helix-turn-helix domain AMJ96_CH03144 PF07690 Major Facilitator Superfamily AMJ96_CH03145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJ96_CH03146 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMJ96_CH03147 PF13460 NADH(P)-binding AMJ96_CH03148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03148 PF03466 LysR substrate binding domain AMJ96_CH03149 PF04229 GrpB protein AMJ96_CH03150 PF09954 AMJ96_CH03150 AMJ96_CH03151 PF01699 Sodium/calcium exchanger protein AMJ96_CH03154 PF01501 Glycosyl transferase family 8 AMJ96_CH03155 PF01850 PIN domain AMJ96_CH03156 PF00155 Aminotransferase class I and II AMJ96_CH03157 PF13231 AMJ96_CH03157 AMJ96_CH03158 PF08487 AMJ96_CH03158 AMJ96_CH03158 PF13768 von Willebrand factor type A domain AMJ96_CH03159 PF04203 Sortase family AMJ96_CH03160 PF07995 Glucose / Sorbosone dehydrogenase AMJ96_CH03163 PF00313 'Cold-shock' DNA-binding domain AMJ96_CH03164 PF07886 AMJ96_CH03164 AMJ96_CH03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03166 PF00072 Response regulator receiver domain AMJ96_CH03166 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03167 PF12802 MarR family AMJ96_CH03170 PF06823 AMJ96_CH03170 AMJ96_CH03170 PF08239 Bacterial SH3 domain AMJ96_CH03171 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH03172 PF01588 Putative tRNA binding domain AMJ96_CH03173 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_CH03173 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJ96_CH03174 PF10722 Putative bacterial sensory transduction regulator AMJ96_CH03176 PF04380 AMJ96_CH03176 AMJ96_CH03177 PF01790 AMJ96_CH03177 AMJ96_CH03178 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03179 PF02578 Multi-copper polyphenol oxidoreductase laccase AMJ96_CH03180 PF00557 Metallopeptidase family M24 AMJ96_CH03180 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_CH03182 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMJ96_CH03182 PF14572 Phosphoribosyl synthetase-associated domain AMJ96_CH03184 PF01386 Ribosomal L25p family AMJ96_CH03184 PF14693 Ribosomal protein TL5, C-terminal domain AMJ96_CH03185 PF00563 EAL domain AMJ96_CH03185 PF00672 HAMP domain AMJ96_CH03185 PF00990 GGDEF domain AMJ96_CH03185 PF13426 PAS domain AMJ96_CH03186 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH03187 PF01195 Peptidyl-tRNA hydrolase AMJ96_CH03188 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03189 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH03190 PF01926 50S ribosome-binding GTPase AMJ96_CH03190 PF06071 Protein of unknown function (DUF933) AMJ96_CH03192 PF01575 MaoC like domain AMJ96_CH03193 PF01575 MaoC like domain AMJ96_CH03194 PF00156 Phosphoribosyl transferase domain AMJ96_CH03195 PF02167 Cytochrome C1 family AMJ96_CH03196 PF00032 Cytochrome b(C-terminal)/b6/petD AMJ96_CH03196 PF00033 Cytochrome b(N-terminal)/b6/petB AMJ96_CH03197 PF00355 Rieske [2Fe-2S] domain AMJ96_CH03197 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMJ96_CH03198 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH03199 PF00005 ABC transporter AMJ96_CH03199 PF00664 ABC transporter transmembrane region AMJ96_CH03201 PF00005 ABC transporter AMJ96_CH03201 PF00664 ABC transporter transmembrane region AMJ96_CH03202 PF00588 SpoU rRNA Methylase family AMJ96_CH03203 PF01895 PhoU domain AMJ96_CH03203 PF02690 AMJ96_CH03203 AMJ96_CH03205 PF01218 Coproporphyrinogen III oxidase AMJ96_CH03207 PF06348 AMJ96_CH03207 AMJ96_CH03208 PF01743 Poly A polymerase head domain AMJ96_CH03208 PF12627 Probable RNA and SrmB- binding site of polymerase A AMJ96_CH03209 PF00293 NUDIX domain AMJ96_CH03210 PF06938 Protein of unknown function (DUF1285) AMJ96_CH03211 PF07726 ATPase family associated with various cellular activities (AAA) AMJ96_CH03212 PF01882 AMJ96_CH03212 AMJ96_CH03213 PF07584 AMJ96_CH03213 AMJ96_CH03213 PF13709 Domain of unknown function (DUF4159) AMJ96_CH03215 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03216 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03217 PF13409 Glutathione S-transferase, N-terminal domain AMJ96_CH03217 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH03218 PF00293 NUDIX domain AMJ96_CH03219 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03221 PF04542 Sigma-70 region 2 AMJ96_CH03221 PF08281 Sigma-70, region 4 AMJ96_CH03223 PF00682 HMGL-like AMJ96_CH03223 PF08502 LeuA allosteric (dimerisation) domain AMJ96_CH03224 PF03594 AMJ96_CH03224 AMJ96_CH03225 PF00574 Clp protease AMJ96_CH03226 PF09849 AMJ96_CH03226 AMJ96_CH03227 PF14489 QueF-like protein AMJ96_CH03228 PF01545 Cation efflux family AMJ96_CH03228 PF16916 AMJ96_CH03228 AMJ96_CH03229 PF09929 AMJ96_CH03229 AMJ96_CH03231 PF00117 Glutamine amidotransferase class-I AMJ96_CH03231 PF00425 chorismate binding enzyme AMJ96_CH03231 PF04715 Anthranilate synthase component I, N terminal region AMJ96_CH03233 PF00593 TonB dependent receptor AMJ96_CH03234 PF06904 AMJ96_CH03234 AMJ96_CH03235 PF01268 Formate--tetrahydrofolate ligase AMJ96_CH03237 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH03237 PF03472 Autoinducer binding domain AMJ96_CH03238 PF08447 PAS fold AMJ96_CH03239 PF10095 AMJ96_CH03239 AMJ96_CH03241 PF00265 Thymidine kinase AMJ96_CH03242 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_CH03243 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03244 PF00005 ABC transporter AMJ96_CH03245 PF13883 Pyridoxamine 5'-phosphate oxidase AMJ96_CH03246 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH03247 PF00202 Aminotransferase class-III AMJ96_CH03248 PF11871 AMJ96_CH03248 AMJ96_CH03248 PF13487 HD domain AMJ96_CH03249 PF13458 Periplasmic binding protein AMJ96_CH03250 PF13103 TonB C terminal AMJ96_CH03251 PF01979 Amidohydrolase family AMJ96_CH03251 PF13382 Adenine deaminase C-terminal domain AMJ96_CH03252 PF00128 Alpha amylase, catalytic domain AMJ96_CH03252 PF16657 AMJ96_CH03252 AMJ96_CH03253 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH03254 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03255 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03255 PF12911 AMJ96_CH03255 AMJ96_CH03256 PF00005 ABC transporter AMJ96_CH03256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH03257 PF00005 ABC transporter AMJ96_CH03257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_CH03259 PF00294 pfkB family carbohydrate kinase AMJ96_CH03260 PF10931 AMJ96_CH03260 AMJ96_CH03261 PF00120 Glutamine synthetase, catalytic domain AMJ96_CH03261 PF03951 Glutamine synthetase, beta-Grasp domain AMJ96_CH03262 PF13439 Glycosyltransferase Family 4 AMJ96_CH03262 PF13692 Glycosyl transferases group 1 AMJ96_CH03263 PF01926 50S ribosome-binding GTPase AMJ96_CH03263 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMJ96_CH03264 PF09976 Tetratricopeptide repeat AMJ96_CH03265 PF07298 AMJ96_CH03265 AMJ96_CH03267 PF05992 AMJ96_CH03267 AMJ96_CH03268 PF06779 AMJ96_CH03268 AMJ96_CH03269 PF01548 AMJ96_CH03269 AMJ96_CH03269 PF02371 AMJ96_CH03269 AMJ96_CH03270 PF00557 Metallopeptidase family M24 AMJ96_CH03271 PF00296 Luciferase-like monooxygenase AMJ96_CH03272 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH03273 PF04542 Sigma-70 region 2 AMJ96_CH03273 PF08281 Sigma-70, region 4 AMJ96_CH03274 PF03795 YCII-related domain AMJ96_CH03275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03276 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03277 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH03277 PF00941 FAD binding domain in molybdopterin dehydrogenase AMJ96_CH03277 PF01799 [2Fe-2S] binding domain AMJ96_CH03277 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMJ96_CH03278 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMJ96_CH03278 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMJ96_CH03279 PF02625 XdhC and CoxI family AMJ96_CH03279 PF13478 XdhC Rossmann domain AMJ96_CH03281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03281 PF03466 LysR substrate binding domain AMJ96_CH03283 PF06181 AMJ96_CH03283 AMJ96_CH03284 PF01979 Amidohydrolase family AMJ96_CH03285 PF01070 FMN-dependent dehydrogenase AMJ96_CH03287 PF14378 AMJ96_CH03287 AMJ96_CH03288 PF12146 Putative lysophospholipase AMJ96_CH03288 PF12147 AMJ96_CH03288 AMJ96_CH03289 PF01066 CDP-alcohol phosphatidyltransferase AMJ96_CH03290 PF04012 AMJ96_CH03290 AMJ96_CH03291 PF07290 AMJ96_CH03291 AMJ96_CH03292 PF01145 SPFH domain / Band 7 family AMJ96_CH03292 PF15975 AMJ96_CH03292 AMJ96_CH03293 PF12850 Calcineurin-like phosphoesterase superfamily domain AMJ96_CH03294 PF00576 HIUase/Transthyretin family AMJ96_CH03295 PF04115 Ureidoglycolate hydrolase AMJ96_CH03296 PF01934 Protein of unknown function DUF86 AMJ96_CH03297 PF09349 OHCU decarboxylase AMJ96_CH03298 PF01522 Polysaccharide deacetylase AMJ96_CH03299 PF06299 AMJ96_CH03299 AMJ96_CH03300 PF01266 FAD dependent oxidoreductase AMJ96_CH03301 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03302 PF00072 Response regulator receiver domain AMJ96_CH03302 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03302 PF08448 PAS fold AMJ96_CH03302 PF12860 AMJ96_CH03302 AMJ96_CH03302 PF13426 PAS domain AMJ96_CH03304 PF00083 Sugar (and other) transporter AMJ96_CH03305 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH03306 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03306 PF13377 Periplasmic binding protein-like domain AMJ96_CH03307 PF08713 DNA alkylation repair enzyme AMJ96_CH03308 PF00270 DEAD/DEAH box helicase AMJ96_CH03308 PF00271 Helicase conserved C-terminal domain AMJ96_CH03309 PF12833 Helix-turn-helix domain AMJ96_CH03309 PF12852 Cupin AMJ96_CH03310 PF07690 Major Facilitator Superfamily AMJ96_CH03311 PF00892 EamA-like transporter family AMJ96_CH03312 PF14403 AMJ96_CH03312 AMJ96_CH03313 PF04168 AMJ96_CH03313 AMJ96_CH03314 PF01841 Transglutaminase-like superfamily AMJ96_CH03314 PF08379 AMJ96_CH03314 AMJ96_CH03315 PF01850 PIN domain AMJ96_CH03316 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_CH03317 PF00920 Dehydratase family AMJ96_CH03318 PF00171 Aldehyde dehydrogenase family AMJ96_CH03320 PF02653 AMJ96_CH03320 AMJ96_CH03321 PF00005 ABC transporter AMJ96_CH03322 PF13407 Periplasmic binding protein domain AMJ96_CH03324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03324 PF03466 LysR substrate binding domain AMJ96_CH03326 PF13403 Hint domain AMJ96_CH03328 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03328 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03329 PF00480 ROK family AMJ96_CH03329 PF13412 Winged helix-turn-helix DNA-binding AMJ96_CH03330 PF13407 Periplasmic binding protein domain AMJ96_CH03331 PF02653 AMJ96_CH03331 AMJ96_CH03332 PF00005 ABC transporter AMJ96_CH03334 PF14130 AMJ96_CH03334 AMJ96_CH03335 PF13476 AAA domain AMJ96_CH03338 PF00144 Beta-lactamase AMJ96_CH03339 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH03340 PF00669 Bacterial flagellin N-terminal helical region AMJ96_CH03340 PF00700 Bacterial flagellin C-terminal helical region AMJ96_CH03341 PF00239 Resolvase, N terminal domain AMJ96_CH03342 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH03346 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03348 PF12766 Pyridoxamine 5'-phosphate oxidase AMJ96_CH03350 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03350 PF01434 Peptidase family M41 AMJ96_CH03353 PF06114 Domain of unknown function (DUF955) AMJ96_CH03356 PF14452 AMJ96_CH03356 AMJ96_CH03356 PF14462 AMJ96_CH03356 AMJ96_CH03357 PF00899 ThiF family AMJ96_CH03357 PF14464 Prokaryotic homologs of the JAB domain AMJ96_CH03359 PF01936 NYN domain AMJ96_CH03359 PF12872 OST-HTH/LOTUS domain AMJ96_CH03368 PF00665 Integrase core domain AMJ96_CH03368 PF09299 Mu transposase, C-terminal AMJ96_CH03369 PF05621 AMJ96_CH03369 AMJ96_CH03370 PF06527 AMJ96_CH03370 AMJ96_CH03370 PF12728 Helix-turn-helix domain AMJ96_CH03371 PF07784 AMJ96_CH03371 AMJ96_CH03372 PF06912 AMJ96_CH03372 AMJ96_CH03373 PF05977 Transmembrane secretion effector AMJ96_CH03374 PF07681 AMJ96_CH03374 AMJ96_CH03375 PF07969 Amidohydrolase family AMJ96_CH03376 PF07235 AMJ96_CH03376 AMJ96_CH03377 PF00857 Isochorismatase family AMJ96_CH03378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03378 PF03466 LysR substrate binding domain AMJ96_CH03379 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH03380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03380 PF03466 LysR substrate binding domain AMJ96_CH03381 PF04752 AMJ96_CH03381 AMJ96_CH03382 PF00027 Cyclic nucleotide-binding domain AMJ96_CH03382 PF07885 Ion channel AMJ96_CH03383 PF01757 AMJ96_CH03383 AMJ96_CH03384 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03384 PF13432 Tetratricopeptide repeat AMJ96_CH03385 PF00355 Rieske [2Fe-2S] domain AMJ96_CH03385 PF01266 FAD dependent oxidoreductase AMJ96_CH03386 PF05951 AMJ96_CH03386 AMJ96_CH03387 PF06169 Protein of unknown function (DUF982) AMJ96_CH03388 PF04972 BON domain AMJ96_CH03389 PF13673 Acetyltransferase (GNAT) domain AMJ96_CH03390 PF08734 AMJ96_CH03390 AMJ96_CH03392 PF02653 AMJ96_CH03392 AMJ96_CH03393 PF00005 ABC transporter AMJ96_CH03394 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03395 PF13407 Periplasmic binding protein domain AMJ96_CH03396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03396 PF03466 LysR substrate binding domain AMJ96_CH03397 PF00144 Beta-lactamase AMJ96_CH03398 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03399 PF00535 Glycosyl transferase family 2 AMJ96_CH03400 PF00535 Glycosyl transferase family 2 AMJ96_CH03400 PF01522 Polysaccharide deacetylase AMJ96_CH03400 PF05401 Nodulation protein S (NodS) AMJ96_CH03401 PF00535 Glycosyl transferase family 2 AMJ96_CH03402 PF00005 ABC transporter AMJ96_CH03402 PF00664 ABC transporter transmembrane region AMJ96_CH03403 PF00535 Glycosyl transferase family 2 AMJ96_CH03406 PF07812 AMJ96_CH03406 AMJ96_CH03407 PF02624 YcaO-like family AMJ96_CH03410 PF01381 Helix-turn-helix AMJ96_CH03411 PF13489 Methyltransferase domain AMJ96_CH03414 PF00331 Glycosyl hydrolase family 10 AMJ96_CH03415 PF00534 Glycosyl transferases group 1 AMJ96_CH03415 PF13439 Glycosyltransferase Family 4 AMJ96_CH03416 PF14602 Hexapeptide repeat of succinyl-transferase AMJ96_CH03417 PF04230 AMJ96_CH03417 AMJ96_CH03418 PF13440 AMJ96_CH03418 AMJ96_CH03419 PF04230 AMJ96_CH03419 AMJ96_CH03421 PF00535 Glycosyl transferase family 2 AMJ96_CH03422 PF00535 Glycosyl transferase family 2 AMJ96_CH03423 PF00535 Glycosyl transferase family 2 AMJ96_CH03424 PF04932 AMJ96_CH03424 AMJ96_CH03425 PF01757 AMJ96_CH03425 AMJ96_CH03426 PF08660 AMJ96_CH03426 AMJ96_CH03427 PF04101 Glycosyltransferase family 28 C-terminal domain AMJ96_CH03428 PF13472 GDSL-like Lipase/Acylhydrolase family AMJ96_CH03429 PF13437 HlyD family secretion protein AMJ96_CH03429 PF13533 Biotin-lipoyl like AMJ96_CH03430 PF00005 ABC transporter AMJ96_CH03430 PF00664 ABC transporter transmembrane region AMJ96_CH03431 PF13229 Right handed beta helix region AMJ96_CH03434 PF02706 Chain length determinant protein AMJ96_CH03434 PF13614 AAA domain AMJ96_CH03434 PF13807 AMJ96_CH03434 AMJ96_CH03436 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH03436 PF10531 SLBB domain AMJ96_CH03437 PF04932 AMJ96_CH03437 AMJ96_CH03438 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AMJ96_CH03439 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJ96_CH03439 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJ96_CH03439 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJ96_CH03440 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03441 PF13619 AMJ96_CH03441 AMJ96_CH03442 PF01738 Dienelactone hydrolase family AMJ96_CH03443 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH03444 PF03167 Uracil DNA glycosylase superfamily AMJ96_CH03445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03446 PF00483 Nucleotidyl transferase AMJ96_CH03446 PF01050 Mannose-6-phosphate isomerase AMJ96_CH03448 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH03449 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03451 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03451 PF09209 Domain of unknown function (DUF1956) AMJ96_CH03452 PF16576 AMJ96_CH03452 AMJ96_CH03453 PF00005 ABC transporter AMJ96_CH03454 PF12698 ABC-2 family transporter protein AMJ96_CH03455 PF12698 ABC-2 family transporter protein AMJ96_CH03456 PF06823 AMJ96_CH03456 AMJ96_CH03457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03457 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03458 PF06283 Trehalose utilisation AMJ96_CH03459 PF00893 Small Multidrug Resistance protein AMJ96_CH03460 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03461 PF01152 Bacterial-like globin AMJ96_CH03462 PF04241 AMJ96_CH03462 AMJ96_CH03463 PF03992 Antibiotic biosynthesis monooxygenase AMJ96_CH03465 PF10087 AMJ96_CH03465 AMJ96_CH03466 PF13103 TonB C terminal AMJ96_CH03468 PF05957 AMJ96_CH03468 AMJ96_CH03470 PF04542 Sigma-70 region 2 AMJ96_CH03470 PF08281 Sigma-70, region 4 AMJ96_CH03472 PF00072 Response regulator receiver domain AMJ96_CH03473 PF07536 AMJ96_CH03473 AMJ96_CH03475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03475 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJ96_CH03476 PF01180 Dihydroorotate dehydrogenase AMJ96_CH03476 PF14697 4Fe-4S dicluster domain AMJ96_CH03477 PF00128 Alpha amylase, catalytic domain AMJ96_CH03477 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03477 PF11941 Domain of unknown function (DUF3459) AMJ96_CH03479 PF00128 Alpha amylase, catalytic domain AMJ96_CH03479 PF16657 AMJ96_CH03479 AMJ96_CH03480 PF01965 DJ-1/PfpI family AMJ96_CH03480 PF12833 Helix-turn-helix domain AMJ96_CH03482 PF05621 AMJ96_CH03482 AMJ96_CH03483 PF00665 Integrase core domain AMJ96_CH03487 PF13476 AAA domain AMJ96_CH03489 PF13304 AAA domain AMJ96_CH03491 PF01965 DJ-1/PfpI family AMJ96_CH03491 PF12833 Helix-turn-helix domain AMJ96_CH03493 PF14280 AMJ96_CH03493 AMJ96_CH03495 PF00270 DEAD/DEAH box helicase AMJ96_CH03495 PF00271 Helicase conserved C-terminal domain AMJ96_CH03495 PF09369 AMJ96_CH03495 AMJ96_CH03496 PF04851 Type III restriction enzyme, res subunit AMJ96_CH03497 PF03235 AMJ96_CH03497 AMJ96_CH03498 PF01555 DNA methylase AMJ96_CH03500 PF13245 Part of AAA domain AMJ96_CH03500 PF13361 UvrD-like helicase C-terminal domain AMJ96_CH03502 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03502 PF01434 Peptidase family M41 AMJ96_CH03503 PF00581 Rhodanese-like domain AMJ96_CH03504 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03504 PF08362 YcdC-like protein, C-terminal region AMJ96_CH03505 PF01546 Peptidase family M20/M25/M40 AMJ96_CH03505 PF07687 Peptidase dimerisation domain AMJ96_CH03506 PF04480 Protein of unknown function (DUF559) AMJ96_CH03507 PF01979 Amidohydrolase family AMJ96_CH03508 PF07883 Cupin domain AMJ96_CH03509 PF00005 ABC transporter AMJ96_CH03510 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03511 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03512 PF09084 NMT1/THI5 like AMJ96_CH03513 PF16576 AMJ96_CH03513 AMJ96_CH03514 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03515 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03516 PF01730 UreF AMJ96_CH03517 PF02814 UreE urease accessory protein, N-terminal domain AMJ96_CH03517 PF05194 UreE urease accessory protein, C-terminal domain AMJ96_CH03518 PF00990 GGDEF domain AMJ96_CH03519 PF09601 AMJ96_CH03519 AMJ96_CH03520 PF00449 Urease alpha-subunit, N-terminal domain AMJ96_CH03520 PF01979 Amidohydrolase family AMJ96_CH03522 PF07007 Protein of unknown function (DUF1311) AMJ96_CH03523 PF00699 Urease beta subunit AMJ96_CH03524 PF06906 AMJ96_CH03524 AMJ96_CH03525 PF00547 Urease, gamma subunit AMJ96_CH03526 PF01774 UreD urease accessory protein AMJ96_CH03527 PF00005 ABC transporter AMJ96_CH03529 PF00005 ABC transporter AMJ96_CH03529 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03530 PF02653 AMJ96_CH03530 AMJ96_CH03531 PF02653 AMJ96_CH03531 AMJ96_CH03532 PF13433 Periplasmic binding protein domain AMJ96_CH03533 PF01569 PAP2 superfamily AMJ96_CH03533 PF12951 AMJ96_CH03533 AMJ96_CH03534 PF00072 Response regulator receiver domain AMJ96_CH03534 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03535 PF00072 Response regulator receiver domain AMJ96_CH03535 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH03536 PF13458 Periplasmic binding protein AMJ96_CH03538 PF00005 ABC transporter AMJ96_CH03539 PF00005 ABC transporter AMJ96_CH03539 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03540 PF02653 AMJ96_CH03540 AMJ96_CH03540 PF11862 AMJ96_CH03540 AMJ96_CH03541 PF02653 AMJ96_CH03541 AMJ96_CH03542 PF00459 Inositol monophosphatase family AMJ96_CH03543 PF02397 AMJ96_CH03543 AMJ96_CH03545 PF06627 Protein of unknown function (DUF1153) AMJ96_CH03546 PF04403 AMJ96_CH03546 AMJ96_CH03547 PF14542 GCN5-related N-acetyl-transferase AMJ96_CH03549 PF00072 Response regulator receiver domain AMJ96_CH03549 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03550 PF00072 Response regulator receiver domain AMJ96_CH03551 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) AMJ96_CH03552 PF06577 AMJ96_CH03552 AMJ96_CH03554 PF00588 SpoU rRNA Methylase family AMJ96_CH03556 PF00849 RNA pseudouridylate synthase AMJ96_CH03556 PF01479 S4 domain AMJ96_CH03557 PF00140 Sigma-70 factor, region 1 AMJ96_CH03557 PF04542 Sigma-70 region 2 AMJ96_CH03557 PF04545 Sigma-70, region 4 AMJ96_CH03559 PF00709 Adenylosuccinate synthetase AMJ96_CH03560 PF00892 EamA-like transporter family AMJ96_CH03561 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03562 PF00920 Dehydratase family AMJ96_CH03563 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03564 PF16576 AMJ96_CH03564 AMJ96_CH03565 PF07859 alpha/beta hydrolase fold AMJ96_CH03566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03566 PF03466 LysR substrate binding domain AMJ96_CH03567 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03568 PF03466 LysR substrate binding domain AMJ96_CH03570 PF02245 Methylpurine-DNA glycosylase (MPG) AMJ96_CH03571 PF07690 Major Facilitator Superfamily AMJ96_CH03572 PF13437 HlyD family secretion protein AMJ96_CH03572 PF13533 Biotin-lipoyl like AMJ96_CH03573 PF01047 MarR family AMJ96_CH03574 PF00999 Sodium/hydrogen exchanger family AMJ96_CH03575 PF16576 AMJ96_CH03575 AMJ96_CH03576 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03577 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03578 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH03579 PF02082 Transcriptional regulator AMJ96_CH03580 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03583 PF07883 Cupin domain AMJ96_CH03584 PF00005 ABC transporter AMJ96_CH03585 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03586 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03587 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03589 PF00480 ROK family AMJ96_CH03589 PF12802 MarR family AMJ96_CH03591 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH03592 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03593 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03594 PF01380 SIS domain AMJ96_CH03595 PF00294 pfkB family carbohydrate kinase AMJ96_CH03596 PF00005 ABC transporter AMJ96_CH03596 PF08402 TOBE domain AMJ96_CH03597 PF00722 Glycosyl hydrolases family 16 AMJ96_CH03598 PF13440 AMJ96_CH03598 AMJ96_CH03599 PF00534 Glycosyl transferases group 1 AMJ96_CH03599 PF13439 Glycosyltransferase Family 4 AMJ96_CH03600 PF00534 Glycosyl transferases group 1 AMJ96_CH03601 PF00027 Cyclic nucleotide-binding domain AMJ96_CH03601 PF13545 Crp-like helix-turn-helix domain AMJ96_CH03602 PF02397 AMJ96_CH03602 AMJ96_CH03603 PF02706 Chain length determinant protein AMJ96_CH03603 PF06564 YhjQ protein AMJ96_CH03603 PF13807 AMJ96_CH03603 AMJ96_CH03604 PF13641 Glycosyltransferase like family 2 AMJ96_CH03605 PF02563 Polysaccharide biosynthesis/export protein AMJ96_CH03605 PF10531 SLBB domain AMJ96_CH03608 PF01501 Glycosyl transferase family 8 AMJ96_CH03609 PF13704 AMJ96_CH03609 AMJ96_CH03610 PF01757 AMJ96_CH03610 AMJ96_CH03611 PF01011 PQQ enzyme repeat AMJ96_CH03612 PF01322 Cytochrome C' AMJ96_CH03613 PF00394 Multicopper oxidase AMJ96_CH03613 PF07731 Multicopper oxidase AMJ96_CH03613 PF07732 Multicopper oxidase AMJ96_CH03614 PF03713 Domain of unknown function (DUF305) AMJ96_CH03615 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMJ96_CH03616 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJ96_CH03617 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH03617 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMJ96_CH03619 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH03620 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH03621 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMJ96_CH03622 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMJ96_CH03623 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMJ96_CH03624 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMJ96_CH03625 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMJ96_CH03626 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMJ96_CH03627 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH03627 PF10531 SLBB domain AMJ96_CH03627 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH03628 PF00384 Molybdopterin oxidoreductase AMJ96_CH03628 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH03628 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH03628 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH03628 PF12838 4Fe-4S dicluster domain AMJ96_CH03628 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH03629 PF00571 CBS domain AMJ96_CH03630 PF12838 4Fe-4S dicluster domain AMJ96_CH03631 PF00146 NADH dehydrogenase AMJ96_CH03641 PF00849 RNA pseudouridylate synthase AMJ96_CH03641 PF01479 S4 domain AMJ96_CH03642 PF00156 Phosphoribosyl transferase domain AMJ96_CH03643 PF03600 Citrate transporter AMJ96_CH03644 PF01259 SAICAR synthetase AMJ96_CH03645 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03646 PF16576 AMJ96_CH03646 AMJ96_CH03647 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03648 PF02321 Outer membrane efflux protein AMJ96_CH03649 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03649 PF13377 Periplasmic binding protein-like domain AMJ96_CH03650 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03651 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03652 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03653 PF00005 ABC transporter AMJ96_CH03654 PF01156 Inosine-uridine preferring nucleoside hydrolase AMJ96_CH03655 PF01979 Amidohydrolase family AMJ96_CH03655 PF13382 Adenine deaminase C-terminal domain AMJ96_CH03656 PF09594 AMJ96_CH03656 AMJ96_CH03659 PF00106 short chain dehydrogenase AMJ96_CH03660 PF01565 FAD binding domain AMJ96_CH03662 PF01040 UbiA prenyltransferase family AMJ96_CH03663 PF01546 Peptidase family M20/M25/M40 AMJ96_CH03663 PF07687 Peptidase dimerisation domain AMJ96_CH03664 PF01970 AMJ96_CH03664 AMJ96_CH03665 PF07331 AMJ96_CH03665 AMJ96_CH03666 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03667 PF00072 Response regulator receiver domain AMJ96_CH03667 PF00158 Sigma-54 interaction domain AMJ96_CH03667 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03668 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03668 PF02743 Cache domain AMJ96_CH03669 PF00174 Oxidoreductase molybdopterin binding domain AMJ96_CH03671 PF09490 AMJ96_CH03671 AMJ96_CH03672 PF09489 AMJ96_CH03672 AMJ96_CH03674 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_CH03676 PF00563 EAL domain AMJ96_CH03676 PF00990 GGDEF domain AMJ96_CH03677 PF00871 Acetokinase family AMJ96_CH03678 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMJ96_CH03678 PF09363 XFP C-terminal domain AMJ96_CH03678 PF09364 XFP N-terminal domain AMJ96_CH03679 PF02311 AraC-like ligand binding domain AMJ96_CH03679 PF12833 Helix-turn-helix domain AMJ96_CH03680 PF01494 FAD binding domain AMJ96_CH03681 PF13458 Periplasmic binding protein AMJ96_CH03682 PF02653 AMJ96_CH03682 AMJ96_CH03683 PF02653 AMJ96_CH03683 AMJ96_CH03684 PF00005 ABC transporter AMJ96_CH03684 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_CH03685 PF00005 ABC transporter AMJ96_CH03689 PF03054 tRNA methyl transferase AMJ96_CH03692 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH03692 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH03693 PF00266 Aminotransferase class-V AMJ96_CH03695 PF13505 Outer membrane protein beta-barrel domain AMJ96_CH03696 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03696 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03696 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03696 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03697 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03697 PF01434 Peptidase family M41 AMJ96_CH03697 PF06480 FtsH Extracellular AMJ96_CH03698 PF01171 PP-loop family AMJ96_CH03699 PF13174 Tetratricopeptide repeat AMJ96_CH03699 PF13432 Tetratricopeptide repeat AMJ96_CH03700 PF00691 OmpA family AMJ96_CH03701 PF04052 TolB amino-terminal domain AMJ96_CH03701 PF07676 WD40-like Beta Propeller Repeat AMJ96_CH03703 PF02472 Biopolymer transport protein ExbD/TolR AMJ96_CH03704 PF01618 AMJ96_CH03704 AMJ96_CH03705 PF03061 Thioesterase superfamily AMJ96_CH03706 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03707 PF01501 Glycosyl transferase family 8 AMJ96_CH03708 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03709 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMJ96_CH03710 PF13277 YmdB-like protein AMJ96_CH03711 PF13483 Beta-lactamase superfamily domain AMJ96_CH03712 PF16242 AMJ96_CH03712 AMJ96_CH03713 PF01709 Transcriptional regulator AMJ96_CH03714 PF00296 Luciferase-like monooxygenase AMJ96_CH03715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03715 PF00672 HAMP domain AMJ96_CH03716 PF02075 Crossover junction endodeoxyribonuclease RuvC AMJ96_CH03717 PF04014 Antidote-toxin recognition MazE AMJ96_CH03718 PF01850 PIN domain AMJ96_CH03719 PF01330 RuvA N terminal domain AMJ96_CH03719 PF07499 RuvA, C-terminal domain AMJ96_CH03719 PF14520 Helix-hairpin-helix domain AMJ96_CH03720 PF05491 Holliday junction DNA helicase ruvB C-terminus AMJ96_CH03720 PF05496 Holliday junction DNA helicase ruvB N-terminus AMJ96_CH03721 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03722 PF00293 NUDIX domain AMJ96_CH03723 PF05163 DinB family AMJ96_CH03724 PF06057 Bacterial virulence protein (VirJ) AMJ96_CH03725 PF09924 Uncharacterized conserved protein (DUF2156) AMJ96_CH03726 PF07681 AMJ96_CH03726 AMJ96_CH03727 PF00924 Mechanosensitive ion channel AMJ96_CH03728 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMJ96_CH03728 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_CH03729 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_CH03730 PF12840 Helix-turn-helix domain AMJ96_CH03731 PF01381 Helix-turn-helix AMJ96_CH03732 PF01370 NAD dependent epimerase/dehydratase family AMJ96_CH03733 PF13449 Esterase-like activity of phytase AMJ96_CH03735 PF05164 Cell division protein ZapA AMJ96_CH03736 PF13747 AMJ96_CH03736 AMJ96_CH03737 PF00456 Transketolase, thiamine diphosphate binding domain AMJ96_CH03737 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH03737 PF02780 Transketolase, C-terminal domain AMJ96_CH03738 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJ96_CH03738 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJ96_CH03741 PF00999 Sodium/hydrogen exchanger family AMJ96_CH03742 PF00162 Phosphoglycerate kinase AMJ96_CH03743 PF00274 Fructose-bisphosphate aldolase class-I AMJ96_CH03744 PF02567 Phenazine biosynthesis-like protein AMJ96_CH03746 PF07690 Major Facilitator Superfamily AMJ96_CH03747 PF06698 AMJ96_CH03747 AMJ96_CH03749 PF07323 Protein of unknown function (DUF1465) AMJ96_CH03750 PF01197 Ribosomal protein L31 AMJ96_CH03752 PF00005 ABC transporter AMJ96_CH03752 PF00664 ABC transporter transmembrane region AMJ96_CH03753 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03754 PF07411 Domain of unknown function (DUF1508) AMJ96_CH03755 PF03795 YCII-related domain AMJ96_CH03757 PF00691 OmpA family AMJ96_CH03759 PF00459 Inositol monophosphatase family AMJ96_CH03760 PF00072 Response regulator receiver domain AMJ96_CH03760 PF01339 CheB methylesterase AMJ96_CH03761 PF01739 CheR methyltransferase, SAM binding domain AMJ96_CH03761 PF03705 CheR methyltransferase, all-alpha domain AMJ96_CH03762 PF01584 CheW-like domain AMJ96_CH03763 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03763 PF12729 AMJ96_CH03763 AMJ96_CH03764 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_CH03764 PF00672 HAMP domain AMJ96_CH03764 PF12729 AMJ96_CH03764 AMJ96_CH03765 PF01584 CheW-like domain AMJ96_CH03766 PF01584 CheW-like domain AMJ96_CH03766 PF01627 Hpt domain AMJ96_CH03766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03766 PF02895 Signal transducing histidine kinase, homodimeric domain AMJ96_CH03767 PF00072 Response regulator receiver domain AMJ96_CH03768 PF13466 STAS domain AMJ96_CH03770 PF08238 Sel1 repeat AMJ96_CH03771 PF02581 Thiamine monophosphate synthase/TENI AMJ96_CH03772 PF01925 AMJ96_CH03772 AMJ96_CH03773 PF12840 Helix-turn-helix domain AMJ96_CH03774 PF04325 Protein of unknown function (DUF465) AMJ96_CH03775 PF04325 Protein of unknown function (DUF465) AMJ96_CH03776 PF00731 AIR carboxylase AMJ96_CH03777 PF02222 ATP-grasp domain AMJ96_CH03778 PF00444 Ribosomal protein L36 AMJ96_CH03780 PF12146 Putative lysophospholipase AMJ96_CH03781 PF01019 Gamma-glutamyltranspeptidase AMJ96_CH03782 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH03783 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03783 PF03466 LysR substrate binding domain AMJ96_CH03784 PF14552 Tautomerase enzyme AMJ96_CH03785 PF16157 AMJ96_CH03785 AMJ96_CH03786 PF01810 AMJ96_CH03786 AMJ96_CH03787 PF00224 Pyruvate kinase, barrel domain AMJ96_CH03787 PF02887 Pyruvate kinase, alpha/beta domain AMJ96_CH03788 PF06282 AMJ96_CH03788 AMJ96_CH03789 PF05013 N-formylglutamate amidohydrolase AMJ96_CH03790 PF06844 Protein of unknown function (DUF1244) AMJ96_CH03791 PF10073 AMJ96_CH03791 AMJ96_CH03792 PF05951 AMJ96_CH03792 AMJ96_CH03793 PF00072 Response regulator receiver domain AMJ96_CH03793 PF00158 Sigma-54 interaction domain AMJ96_CH03793 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03794 PF01432 Peptidase family M3 AMJ96_CH03794 PF08439 Oligopeptidase F AMJ96_CH03795 PF00425 chorismate binding enzyme AMJ96_CH03796 PF01063 Aminotransferase class IV AMJ96_CH03797 PF03795 YCII-related domain AMJ96_CH03798 PF03435 Saccharopine dehydrogenase AMJ96_CH03798 PF16653 AMJ96_CH03798 AMJ96_CH03800 PF00149 Calcineurin-like phosphoesterase AMJ96_CH03800 PF01476 LysM domain AMJ96_CH03800 PF02872 5'-nucleotidase, C-terminal domain AMJ96_CH03801 PF00762 Ferrochelatase AMJ96_CH03802 PF01145 SPFH domain / Band 7 family AMJ96_CH03803 PF01957 NfeD-like C-terminal, partner-binding AMJ96_CH03804 PF00571 CBS domain AMJ96_CH03804 PF01380 SIS domain AMJ96_CH03805 PF10082 AMJ96_CH03805 AMJ96_CH03806 PF00483 Nucleotidyl transferase AMJ96_CH03807 PF01471 Putative peptidoglycan binding domain AMJ96_CH03807 PF13406 Transglycosylase SLT domain AMJ96_CH03808 PF04311 AMJ96_CH03808 AMJ96_CH03810 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJ96_CH03811 PF00310 Glutamine amidotransferases class-II AMJ96_CH03811 PF01493 GXGXG motif AMJ96_CH03811 PF01645 Conserved region in glutamate synthase AMJ96_CH03811 PF04898 Glutamate synthase central domain AMJ96_CH03812 PF01212 Beta-eliminating lyase AMJ96_CH03813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03813 PF03466 LysR substrate binding domain AMJ96_CH03814 PF13593 SBF-like CPA transporter family (DUF4137) AMJ96_CH03815 PF00011 Hsp20/alpha crystallin family AMJ96_CH03816 PF12146 Putative lysophospholipase AMJ96_CH03817 PF00459 Inositol monophosphatase family AMJ96_CH03818 PF05013 N-formylglutamate amidohydrolase AMJ96_CH03819 PF00072 Response regulator receiver domain AMJ96_CH03822 PF02530 AMJ96_CH03822 AMJ96_CH03827 PF04332 AMJ96_CH03827 AMJ96_CH03829 PF01970 AMJ96_CH03829 AMJ96_CH03830 PF07331 AMJ96_CH03830 AMJ96_CH03831 PF03401 Tripartite tricarboxylate transporter family receptor AMJ96_CH03832 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03833 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03833 PF13431 Tetratricopeptide repeat AMJ96_CH03833 PF13432 Tetratricopeptide repeat AMJ96_CH03834 PF00072 Response regulator receiver domain AMJ96_CH03834 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH03835 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_CH03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_CH03835 PF08521 AMJ96_CH03835 AMJ96_CH03836 PF01841 Transglutaminase-like superfamily AMJ96_CH03836 PF08379 AMJ96_CH03836 AMJ96_CH03836 PF09899 AMJ96_CH03836 AMJ96_CH03837 PF04168 AMJ96_CH03837 AMJ96_CH03837 PF14403 AMJ96_CH03837 AMJ96_CH03838 PF01841 Transglutaminase-like superfamily AMJ96_CH03838 PF08379 AMJ96_CH03838 AMJ96_CH03839 PF00092 von Willebrand factor type A domain AMJ96_CH03839 PF13400 AMJ96_CH03839 AMJ96_CH03840 PF00343 Carbohydrate phosphorylase AMJ96_CH03841 PF00128 Alpha amylase, catalytic domain AMJ96_CH03841 PF02806 Alpha amylase, C-terminal all-beta domain AMJ96_CH03841 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03842 PF00483 Nucleotidyl transferase AMJ96_CH03843 PF00534 Glycosyl transferases group 1 AMJ96_CH03843 PF08323 Starch synthase catalytic domain AMJ96_CH03844 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJ96_CH03844 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJ96_CH03844 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJ96_CH03844 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJ96_CH03845 PF00128 Alpha amylase, catalytic domain AMJ96_CH03845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_CH03846 PF01575 MaoC like domain AMJ96_CH03847 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH03848 PF04268 Sarcosine oxidase, gamma subunit family AMJ96_CH03849 PF01571 Aminomethyltransferase folate-binding domain AMJ96_CH03849 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH03849 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_CH03849 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH03850 PF04267 Sarcosine oxidase, delta subunit family AMJ96_CH03851 PF01266 FAD dependent oxidoreductase AMJ96_CH03852 PF04773 FecR protein AMJ96_CH03853 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03853 PF05226 AMJ96_CH03853 AMJ96_CH03854 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03854 PF11845 AMJ96_CH03854 AMJ96_CH03855 PF01165 Ribosomal protein S21 AMJ96_CH03856 PF00515 Tetratricopeptide repeat AMJ96_CH03856 PF13181 Tetratricopeptide repeat AMJ96_CH03857 PF07536 AMJ96_CH03857 AMJ96_CH03858 PF06186 AMJ96_CH03858 AMJ96_CH03859 PF02233 NAD(P) transhydrogenase beta subunit AMJ96_CH03860 PF12769 Domain of unknown function (DUF3814) AMJ96_CH03861 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_CH03861 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_CH03862 PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV AMJ96_CH03864 PF00563 EAL domain AMJ96_CH03864 PF00990 GGDEF domain AMJ96_CH03864 PF12860 AMJ96_CH03864 AMJ96_CH03865 PF04290 AMJ96_CH03865 AMJ96_CH03866 PF06808 AMJ96_CH03866 AMJ96_CH03867 PF05598 AMJ96_CH03867 AMJ96_CH03867 PF13751 AMJ96_CH03867 AMJ96_CH03868 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_CH03869 PF07722 Peptidase C26 AMJ96_CH03870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_CH03870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_CH03871 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03871 PF13377 Periplasmic binding protein-like domain AMJ96_CH03872 PF01047 MarR family AMJ96_CH03873 PF02633 Creatinine amidohydrolase AMJ96_CH03874 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03874 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH03875 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMJ96_CH03876 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03877 PF00132 Bacterial transferase hexapeptide (six repeats) AMJ96_CH03877 PF06426 Serine acetyltransferase, N-terminal AMJ96_CH03878 PF00990 GGDEF domain AMJ96_CH03879 PF00144 Beta-lactamase AMJ96_CH03880 PF00583 Acetyltransferase (GNAT) family AMJ96_CH03881 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJ96_CH03881 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJ96_CH03882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03882 PF03466 LysR substrate binding domain AMJ96_CH03883 PF06226 AMJ96_CH03883 AMJ96_CH03884 PF03824 AMJ96_CH03884 AMJ96_CH03886 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH03887 PF04391 AMJ96_CH03887 AMJ96_CH03888 PF01081 KDPG and KHG aldolase AMJ96_CH03889 PF01928 CYTH domain AMJ96_CH03890 PF05235 CHAD domain AMJ96_CH03891 PF00581 Rhodanese-like domain AMJ96_CH03892 PF00563 EAL domain AMJ96_CH03892 PF00990 GGDEF domain AMJ96_CH03892 PF05228 AMJ96_CH03892 AMJ96_CH03893 PF00232 Glycosyl hydrolase family 1 AMJ96_CH03894 PF07681 AMJ96_CH03894 AMJ96_CH03895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_CH03895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_CH03896 PF01261 Xylose isomerase-like TIM barrel AMJ96_CH03896 PF07582 AP endonuclease family 2 C terminus AMJ96_CH03897 PF13407 Periplasmic binding protein domain AMJ96_CH03898 PF02653 AMJ96_CH03898 AMJ96_CH03899 PF00005 ABC transporter AMJ96_CH03900 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03900 PF13377 Periplasmic binding protein-like domain AMJ96_CH03902 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03902 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03903 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03903 PF13407 Periplasmic binding protein domain AMJ96_CH03904 PF07690 Major Facilitator Superfamily AMJ96_CH03905 PF00529 HlyD family secretion protein AMJ96_CH03905 PF16576 AMJ96_CH03905 AMJ96_CH03906 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03906 PF14246 AefR-like transcriptional repressor, C-terminal region AMJ96_CH03907 PF06445 GyrI-like small molecule binding domain AMJ96_CH03907 PF12833 Helix-turn-helix domain AMJ96_CH03908 PF03741 AMJ96_CH03908 AMJ96_CH03909 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJ96_CH03910 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH03910 PF01336 OB-fold nucleic acid binding domain AMJ96_CH03912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH03912 PF03466 LysR substrate binding domain AMJ96_CH03913 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH03914 PF00005 ABC transporter AMJ96_CH03914 PF08402 TOBE domain AMJ96_CH03915 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03916 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03917 PF00171 Aldehyde dehydrogenase family AMJ96_CH03918 PF07043 AMJ96_CH03918 AMJ96_CH03919 PF07681 AMJ96_CH03919 AMJ96_CH03920 PF13432 Tetratricopeptide repeat AMJ96_CH03921 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH03922 PF04542 Sigma-70 region 2 AMJ96_CH03922 PF08281 Sigma-70, region 4 AMJ96_CH03923 PF13490 Putative zinc-finger AMJ96_CH03924 PF07077 AMJ96_CH03924 AMJ96_CH03925 PF00923 Transaldolase AMJ96_CH03926 PF04198 Putative sugar-binding domain AMJ96_CH03926 PF13384 Homeodomain-like domain AMJ96_CH03927 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJ96_CH03927 PF12833 Helix-turn-helix domain AMJ96_CH03928 PF10003 AMJ96_CH03928 AMJ96_CH03929 PF00633 Helix-hairpin-helix motif AMJ96_CH03929 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJ96_CH03929 PF10576 Iron-sulfur binding domain of endonuclease III AMJ96_CH03930 PF07264 Etoposide-induced protein 2 AMJ96_CH03932 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_CH03932 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_CH03933 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_CH03934 PF01232 Mannitol dehydrogenase Rossmann domain AMJ96_CH03934 PF08125 Mannitol dehydrogenase C-terminal domain AMJ96_CH03935 PF00005 ABC transporter AMJ96_CH03935 PF03459 TOBE domain AMJ96_CH03936 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03937 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03938 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH03939 PF04198 Putative sugar-binding domain AMJ96_CH03940 PF06055 AMJ96_CH03940 AMJ96_CH03941 PF00480 ROK family AMJ96_CH03942 PF00728 Glycosyl hydrolase family 20, catalytic domain AMJ96_CH03943 PF00873 AcrB/AcrD/AcrF family AMJ96_CH03944 PF16576 AMJ96_CH03944 AMJ96_CH03945 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH03946 PF02566 OsmC-like protein AMJ96_CH03947 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03948 PF01263 Aldose 1-epimerase AMJ96_CH03949 PF02653 AMJ96_CH03949 AMJ96_CH03950 PF00005 ABC transporter AMJ96_CH03951 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_CH03952 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH03952 PF07729 FCD domain AMJ96_CH03953 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_CH03953 PF13378 Enolase C-terminal domain-like AMJ96_CH03954 PF07681 AMJ96_CH03954 AMJ96_CH03955 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03956 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03957 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03957 PF13407 Periplasmic binding protein domain AMJ96_CH03958 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMJ96_CH03959 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH03960 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_CH03961 PF00703 Glycosyl hydrolases family 2 AMJ96_CH03961 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMJ96_CH03961 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMJ96_CH03962 PF00005 ABC transporter AMJ96_CH03963 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03964 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH03965 PF01547 Bacterial extracellular solute-binding protein AMJ96_CH03966 PF00356 Bacterial regulatory proteins, lacI family AMJ96_CH03966 PF13377 Periplasmic binding protein-like domain AMJ96_CH03967 PF06508 Queuosine biosynthesis protein QueC AMJ96_CH03968 PF01242 6-pyruvoyl tetrahydropterin synthase AMJ96_CH03969 PF04055 Radical SAM superfamily AMJ96_CH03969 PF13394 4Fe-4S single cluster domain AMJ96_CH03970 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_CH03971 PF00268 Ribonucleotide reductase, small chain AMJ96_CH03972 PF00317 Ribonucleotide reductase, all-alpha domain AMJ96_CH03972 PF02867 Ribonucleotide reductase, barrel domain AMJ96_CH03972 PF08343 Ribonucleotide reductase N-terminal AMJ96_CH03973 PF07972 NrdI Flavodoxin like AMJ96_CH03974 PF00462 Glutaredoxin AMJ96_CH03975 PF00122 E1-E2 ATPase AMJ96_CH03975 PF00403 Heavy-metal-associated domain AMJ96_CH03975 PF00702 haloacid dehalogenase-like hydrolase AMJ96_CH03976 PF00376 MerR family regulatory protein AMJ96_CH03976 PF09278 MerR, DNA binding AMJ96_CH03977 PF03486 HI0933-like protein AMJ96_CH03978 PF01590 GAF domain AMJ96_CH03978 PF02954 Bacterial regulatory protein, Fis family AMJ96_CH03979 PF00171 Aldehyde dehydrogenase family AMJ96_CH03980 PF05610 AMJ96_CH03980 AMJ96_CH03981 PF01965 DJ-1/PfpI family AMJ96_CH03982 PF13467 Ribbon-helix-helix domain AMJ96_CH03983 PF00106 short chain dehydrogenase AMJ96_CH03984 PF01699 Sodium/calcium exchanger protein AMJ96_CH03992 PF01551 Peptidase family M23 AMJ96_CH03993 PF00004 ATPase family associated with various cellular activities (AAA) AMJ96_CH03993 PF02861 Clp amino terminal domain AMJ96_CH03993 PF07724 AAA domain (Cdc48 subfamily) AMJ96_CH03993 PF10431 C-terminal, D2-small domain, of ClpB protein AMJ96_CH03995 PF13763 AMJ96_CH03995 AMJ96_CH03996 PF05175 Methyltransferase small domain AMJ96_CH03997 PF00472 RF-1 domain AMJ96_CH03997 PF03462 PCRF domain AMJ96_CH03998 PF00391 PEP-utilising enzyme, mobile domain AMJ96_CH03998 PF02896 PEP-utilising enzyme, TIM barrel domain AMJ96_CH03998 PF05524 PEP-utilising enzyme, N-terminal AMJ96_CH03998 PF13185 GAF domain AMJ96_CH03999 PF00696 Amino acid kinase family AMJ96_CH03999 PF01842 ACT domain AMJ96_CH03999 PF13840 ACT domain AMJ96_CH04000 PF13489 Methyltransferase domain AMJ96_CH04001 PF06676 AMJ96_CH04001 AMJ96_CH04002 PF00795 Carbon-nitrogen hydrolase AMJ96_CH04003 PF00462 Glutaredoxin AMJ96_CH04004 PF00156 Phosphoribosyl transferase domain AMJ96_CH04005 PF08241 Methyltransferase domain AMJ96_CH04006 PF04964 AMJ96_CH04006 AMJ96_CH04008 PF00293 NUDIX domain AMJ96_CH04009 PF00583 Acetyltransferase (GNAT) family AMJ96_CH04010 PF01960 ArgJ family AMJ96_CH04011 PF13616 PPIC-type PPIASE domain AMJ96_CH04012 PF01043 SecA preprotein cross-linking domain AMJ96_CH04012 PF02810 SEC-C motif AMJ96_CH04012 PF07516 SecA Wing and Scaffold domain AMJ96_CH04012 PF07517 SecA DEAD-like domain AMJ96_CH04013 PF01943 AMJ96_CH04013 AMJ96_CH04013 PF14667 Polysaccharide biosynthesis C-terminal domain AMJ96_CH04014 PF13480 Acetyltransferase (GNAT) domain AMJ96_CH04015 PF00501 AMP-binding enzyme AMJ96_CH04015 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH04016 PF00248 Aldo/keto reductase family AMJ96_CH04017 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH04018 PF07690 Major Facilitator Superfamily AMJ96_CH04022 PF00027 Cyclic nucleotide-binding domain AMJ96_CH04022 PF00999 Sodium/hydrogen exchanger family AMJ96_CH04025 PF02600 Disulfide bond formation protein DsbB AMJ96_CH04026 PF14279 AMJ96_CH04026 AMJ96_CH04027 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJ96_CH04028 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJ96_CH04029 PF03631 AMJ96_CH04029 AMJ96_CH04030 PF00106 short chain dehydrogenase AMJ96_CH04031 PF04588 Hypoxia induced protein conserved region AMJ96_CH04032 PF01923 Cobalamin adenosyltransferase AMJ96_CH04033 PF01694 Rhomboid family AMJ96_CH04034 PF01012 Electron transfer flavoprotein domain AMJ96_CH04035 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_CH04035 PF01012 Electron transfer flavoprotein domain AMJ96_CH04037 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_CH04037 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_CH04038 PF08534 Redoxin AMJ96_CH04039 PF00206 Lyase AMJ96_CH04039 PF14698 Argininosuccinate lyase C-terminal AMJ96_CH04040 PF13627 AMJ96_CH04040 AMJ96_CH04041 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJ96_CH04041 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJ96_CH04042 PF13779 AMJ96_CH04042 AMJ96_CH04043 PF00072 Response regulator receiver domain AMJ96_CH04044 PF00156 Phosphoribosyl transferase domain AMJ96_CH04046 PF00005 ABC transporter AMJ96_CH04048 PF02698 DUF218 domain AMJ96_CH04049 PF01553 Acyltransferase AMJ96_CH04050 PF04752 AMJ96_CH04050 AMJ96_CH04051 PF09898 AMJ96_CH04051 AMJ96_CH04052 PF00583 Acetyltransferase (GNAT) family AMJ96_CH04053 PF02153 Prephenate dehydrogenase AMJ96_CH04054 PF00155 Aminotransferase class I and II AMJ96_CH04055 PF08241 Methyltransferase domain AMJ96_CH04056 PF00753 Metallo-beta-lactamase superfamily AMJ96_CH04056 PF16123 AMJ96_CH04056 AMJ96_CH04057 PF06172 Cupin superfamily (DUF985) AMJ96_CH04058 PF00892 EamA-like transporter family AMJ96_CH04059 PF11306 Protein of unknown function (DUF3108) AMJ96_CH04060 PF00830 Ribosomal L28 family AMJ96_CH04061 PF02592 AMJ96_CH04061 AMJ96_CH04063 PF13449 Esterase-like activity of phytase AMJ96_CH04064 PF06213 AMJ96_CH04064 AMJ96_CH04064 PF11775 AMJ96_CH04064 AMJ96_CH04065 PF07728 AAA domain (dynein-related subfamily) AMJ96_CH04065 PF08406 AMJ96_CH04065 AMJ96_CH04065 PF12556 AMJ96_CH04065 AMJ96_CH04066 PF00226 DnaJ domain AMJ96_CH04067 PF01722 BolA-like protein AMJ96_CH04068 PF00571 CBS domain AMJ96_CH04068 PF01595 AMJ96_CH04068 AMJ96_CH04068 PF03471 Transporter associated domain AMJ96_CH04069 PF01761 3-dehydroquinate synthase AMJ96_CH04070 PF01202 Shikimate kinase AMJ96_CH04072 PF00589 Phage integrase family AMJ96_CH04072 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_CH04073 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMJ96_CH04074 PF03734 L,D-transpeptidase catalytic domain AMJ96_CH04075 PF01206 Sulfurtransferase TusA AMJ96_CH04076 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH04076 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJ96_CH04077 PF00768 D-alanyl-D-alanine carboxypeptidase AMJ96_CH04078 PF01546 Peptidase family M20/M25/M40 AMJ96_CH04078 PF07687 Peptidase dimerisation domain AMJ96_CH04080 PF06169 Protein of unknown function (DUF982) AMJ96_CH04081 PF11157 AMJ96_CH04081 AMJ96_CH04084 PF04972 BON domain AMJ96_CH04086 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMJ96_CH04086 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AMJ96_CH04086 PF13288 DXP reductoisomerase C-terminal domain AMJ96_CH04087 PF00005 ABC transporter AMJ96_CH04087 PF08402 TOBE domain AMJ96_CH04088 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMJ96_CH04089 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04090 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04091 PF13416 Bacterial extracellular solute-binding protein AMJ96_CH04092 PF13377 Periplasmic binding protein-like domain AMJ96_CH04093 PF00155 Aminotransferase class I and II AMJ96_CH04094 PF13441 AMJ96_CH04094 AMJ96_CH04095 PF01103 Surface antigen AMJ96_CH04095 PF07244 Surface antigen variable number repeat AMJ96_CH04096 PF04357 AMJ96_CH04096 AMJ96_CH04097 PF01037 AsnC family AMJ96_CH04097 PF13404 AsnC-type helix-turn-helix domain AMJ96_CH04098 PF00491 Arginase family AMJ96_CH04099 PF00202 Aminotransferase class-III AMJ96_CH04100 PF01584 CheW-like domain AMJ96_CH04101 PF07690 Major Facilitator Superfamily AMJ96_CH04102 PF11390 AMJ96_CH04102 AMJ96_CH04103 PF02634 FdhD/NarQ family AMJ96_CH04104 PF00037 4Fe-4S binding domain AMJ96_CH04104 PF00384 Molybdopterin oxidoreductase AMJ96_CH04104 PF01568 Molydopterin dinucleotide binding domain AMJ96_CH04104 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJ96_CH04104 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJ96_CH04104 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH04105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJ96_CH04105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJ96_CH04106 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMJ96_CH04107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04107 PF03466 LysR substrate binding domain AMJ96_CH04108 PF01022 Bacterial regulatory protein, arsR family AMJ96_CH04109 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH04110 PF00376 MerR family regulatory protein AMJ96_CH04110 PF09278 MerR, DNA binding AMJ96_CH04112 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04113 PF00005 ABC transporter AMJ96_CH04114 PF09084 NMT1/THI5 like AMJ96_CH04115 PF01757 AMJ96_CH04115 AMJ96_CH04116 PF02397 AMJ96_CH04116 AMJ96_CH04117 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMJ96_CH04119 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04119 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_CH04120 PF00231 ATP synthase AMJ96_CH04121 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04121 PF00306 ATP synthase alpha/beta chain, C terminal domain AMJ96_CH04121 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_CH04122 PF00213 ATP synthase delta (OSCP) subunit AMJ96_CH04124 PF00270 DEAD/DEAH box helicase AMJ96_CH04125 PF00701 Dihydrodipicolinate synthetase family AMJ96_CH04126 PF00583 Acetyltransferase (GNAT) family AMJ96_CH04127 PF01553 Acyltransferase AMJ96_CH04128 PF00589 Phage integrase family AMJ96_CH04128 PF02899 Phage integrase, N-terminal SAM-like domain AMJ96_CH04129 PF01963 AMJ96_CH04129 AMJ96_CH04130 PF01292 Prokaryotic cytochrome b561 AMJ96_CH04131 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_CH04131 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_CH04133 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH04135 PF14025 AMJ96_CH04135 AMJ96_CH04136 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_CH04136 PF00364 Biotin-requiring enzyme AMJ96_CH04136 PF02817 e3 binding domain AMJ96_CH04137 PF03795 YCII-related domain AMJ96_CH04138 PF00676 Dehydrogenase E1 component AMJ96_CH04138 PF02779 Transketolase, pyrimidine binding domain AMJ96_CH04138 PF16078 AMJ96_CH04138 AMJ96_CH04138 PF16870 AMJ96_CH04138 AMJ96_CH04139 PF00549 CoA-ligase AMJ96_CH04139 PF02629 CoA binding domain AMJ96_CH04140 PF00549 CoA-ligase AMJ96_CH04140 PF08442 ATP-grasp domain AMJ96_CH04141 PF00056 lactate/malate dehydrogenase, NAD binding domain AMJ96_CH04141 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMJ96_CH04142 PF03969 AFG1-like ATPase AMJ96_CH04143 PF02974 Protease inhibitor Inh AMJ96_CH04144 PF13085 2Fe-2S iron-sulfur cluster binding domain AMJ96_CH04144 PF13534 4Fe-4S dicluster domain AMJ96_CH04145 PF00890 FAD binding domain AMJ96_CH04145 PF02910 Fumarate reductase flavoprotein C-term AMJ96_CH04146 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMJ96_CH04147 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMJ96_CH04149 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMJ96_CH04150 PF01878 EVE domain AMJ96_CH04151 PF03795 YCII-related domain AMJ96_CH04152 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMJ96_CH04152 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMJ96_CH04153 PF00814 Glycoprotease family AMJ96_CH04154 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMJ96_CH04154 PF03900 Porphobilinogen deaminase, C-terminal domain AMJ96_CH04155 PF02602 Uroporphyrinogen-III synthase HemD AMJ96_CH04157 PF07219 AMJ96_CH04157 AMJ96_CH04158 PF05099 Tellurite resistance protein TerB AMJ96_CH04159 PF00117 Glutamine amidotransferase class-I AMJ96_CH04160 PF05977 Transmembrane secretion effector AMJ96_CH04161 PF02325 AMJ96_CH04161 AMJ96_CH04162 PF02594 Uncharacterised ACR, YggU family COG1872 AMJ96_CH04163 PF00719 Inorganic pyrophosphatase AMJ96_CH04164 PF00583 Acetyltransferase (GNAT) family AMJ96_CH04165 PF00009 Elongation factor Tu GTP binding domain AMJ96_CH04165 PF00679 Elongation factor G C-terminus AMJ96_CH04165 PF03144 Elongation factor Tu domain 2 AMJ96_CH04166 PF01432 Peptidase family M3 AMJ96_CH04168 PF01810 AMJ96_CH04168 AMJ96_CH04169 PF07883 Cupin domain AMJ96_CH04170 PF00440 Bacterial regulatory proteins, tetR family AMJ96_CH04171 PF00764 Arginosuccinate synthase AMJ96_CH04172 PF00106 short chain dehydrogenase AMJ96_CH04173 PF01810 AMJ96_CH04173 AMJ96_CH04174 PF00005 ABC transporter AMJ96_CH04175 PF02653 AMJ96_CH04175 AMJ96_CH04176 PF04392 ABC transporter substrate binding protein AMJ96_CH04177 PF04055 Radical SAM superfamily AMJ96_CH04179 PF04542 Sigma-70 region 2 AMJ96_CH04179 PF08281 Sigma-70, region 4 AMJ96_CH04180 PF06803 AMJ96_CH04180 AMJ96_CH04181 PF01329 Pterin 4 alpha carbinolamine dehydratase AMJ96_CH04182 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJ96_CH04183 PF02834 LigT like Phosphoesterase AMJ96_CH04184 PF13472 GDSL-like Lipase/Acylhydrolase family AMJ96_CH04185 PF00005 ABC transporter AMJ96_CH04187 PF01027 Inhibitor of apoptosis-promoting Bax1 AMJ96_CH04188 PF13420 Acetyltransferase (GNAT) domain AMJ96_CH04189 PF10984 AMJ96_CH04189 AMJ96_CH04190 PF06764 Protein of unknown function (DUF1223) AMJ96_CH04191 PF00330 Aconitase family (aconitate hydratase) AMJ96_CH04191 PF00694 Aconitase C-terminal domain AMJ96_CH04193 PF00005 ABC transporter AMJ96_CH04194 PF03379 AMJ96_CH04194 AMJ96_CH04195 PF01578 AMJ96_CH04195 AMJ96_CH04196 PF04995 AMJ96_CH04196 AMJ96_CH04197 PF08534 Redoxin AMJ96_CH04198 PF10755 AMJ96_CH04198 AMJ96_CH04199 PF04279 AMJ96_CH04199 AMJ96_CH04200 PF00448 SRP54-type protein, GTPase domain AMJ96_CH04200 PF02881 SRP54-type protein, helical bundle domain AMJ96_CH04201 PF00919 Uncharacterized protein family UPF0004 AMJ96_CH04201 PF04055 Radical SAM superfamily AMJ96_CH04202 PF01678 Diaminopimelate epimerase AMJ96_CH04204 PF00448 SRP54-type protein, GTPase domain AMJ96_CH04204 PF02881 SRP54-type protein, helical bundle domain AMJ96_CH04204 PF02978 Signal peptide binding domain AMJ96_CH04205 PF01817 Chorismate mutase type II AMJ96_CH04206 PF00886 Ribosomal protein S16 AMJ96_CH04207 PF01782 RimM N-terminal domain AMJ96_CH04207 PF05239 PRC-barrel domain AMJ96_CH04208 PF01746 tRNA (Guanine-1)-methyltransferase AMJ96_CH04209 PF01245 Ribosomal protein L19 AMJ96_CH04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH04211 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04213 PF00330 Aconitase family (aconitate hydratase) AMJ96_CH04214 PF00248 Aldo/keto reductase family AMJ96_CH04216 PF00072 Response regulator receiver domain AMJ96_CH04216 PF00486 Transcriptional regulatory protein, C terminal AMJ96_CH04217 PF00027 Cyclic nucleotide-binding domain AMJ96_CH04218 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH04219 PF03548 Outer membrane lipoprotein carrier protein LolA AMJ96_CH04220 PF01580 FtsK/SpoIIIE family AMJ96_CH04220 PF09397 Ftsk gamma domain AMJ96_CH04220 PF13491 AMJ96_CH04220 AMJ96_CH04221 PF00909 Ammonium Transporter Family AMJ96_CH04222 PF00543 Nitrogen regulatory protein P-II AMJ96_CH04223 PF13622 Thioesterase-like superfamily AMJ96_CH04224 PF01494 FAD binding domain AMJ96_CH04225 PF03966 Trm112p-like protein AMJ96_CH04226 PF02190 ATP-dependent protease La (LON) domain AMJ96_CH04227 PF00085 Thioredoxin AMJ96_CH04227 PF14559 Tetratricopeptide repeat AMJ96_CH04227 PF14561 Tetratricopeptide repeat AMJ96_CH04228 PF04073 Aminoacyl-tRNA editing domain AMJ96_CH04230 PF11154 AMJ96_CH04230 AMJ96_CH04231 PF06283 Trehalose utilisation AMJ96_CH04232 PF16363 AMJ96_CH04232 AMJ96_CH04233 PF00884 Sulfatase AMJ96_CH04233 PF16347 AMJ96_CH04233 AMJ96_CH04234 PF09351 Domain of unknown function (DUF1993) AMJ96_CH04235 PF13407 Periplasmic binding protein domain AMJ96_CH04236 PF00005 ABC transporter AMJ96_CH04237 PF02653 AMJ96_CH04237 AMJ96_CH04238 PF01244 Membrane dipeptidase (Peptidase family M19) AMJ96_CH04239 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_CH04240 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04241 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04241 PF12911 AMJ96_CH04241 AMJ96_CH04242 PF00005 ABC transporter AMJ96_CH04243 PF00005 ABC transporter AMJ96_CH04246 PF06165 Glycosyltransferase family 36 AMJ96_CH04246 PF10091 Putative glucoamylase AMJ96_CH04246 PF17167 AMJ96_CH04246 AMJ96_CH04247 PF10129 AMJ96_CH04247 AMJ96_CH04248 PF12681 Glyoxalase-like domain AMJ96_CH04249 PF00005 ABC transporter AMJ96_CH04249 PF00664 ABC transporter transmembrane region AMJ96_CH04250 PF00196 Bacterial regulatory proteins, luxR family AMJ96_CH04250 PF03472 Autoinducer binding domain AMJ96_CH04251 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMJ96_CH04251 PF00364 Biotin-requiring enzyme AMJ96_CH04251 PF00682 HMGL-like AMJ96_CH04251 PF02436 Conserved carboxylase domain AMJ96_CH04251 PF02785 Biotin carboxylase C-terminal domain AMJ96_CH04251 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_CH04252 PF03358 NADPH-dependent FMN reductase AMJ96_CH04253 PF00005 ABC transporter AMJ96_CH04254 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04255 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_CH04257 PF00455 AMJ96_CH04257 AMJ96_CH04257 PF08220 DeoR-like helix-turn-helix domain AMJ96_CH04258 PF07690 Major Facilitator Superfamily AMJ96_CH04259 PF04551 GcpE protein AMJ96_CH04260 PF00155 Aminotransferase class I and II AMJ96_CH04261 PF00348 Polyprenyl synthetase AMJ96_CH04262 PF00912 Transglycosylase AMJ96_CH04263 PF08975 Domain of unknown function (DUF1868) AMJ96_CH04264 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_CH04264 PF13417 Glutathione S-transferase, N-terminal domain AMJ96_CH04265 PF01783 Ribosomal L32p protein family AMJ96_CH04267 PF05233 AMJ96_CH04267 AMJ96_CH04267 PF07879 AMJ96_CH04267 AMJ96_CH04268 PF00108 Thiolase, N-terminal domain AMJ96_CH04268 PF02803 Thiolase, C-terminal domain AMJ96_CH04269 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_CH04270 PF13488 AMJ96_CH04270 AMJ96_CH04271 PF11752 AMJ96_CH04271 AMJ96_CH04272 PF00271 Helicase conserved C-terminal domain AMJ96_CH04273 PF01479 S4 domain AMJ96_CH04274 PF00037 4Fe-4S binding domain AMJ96_CH04274 PF11953 Domain of unknown function (DUF3470) AMJ96_CH04276 PF02559 CarD-like/TRCF domain AMJ96_CH04277 PF04542 Sigma-70 region 2 AMJ96_CH04277 PF04545 Sigma-70, region 4 AMJ96_CH04278 PF01435 Peptidase family M48 AMJ96_CH04279 PF07690 Major Facilitator Superfamily AMJ96_CH04280 PF12802 MarR family AMJ96_CH04281 PF04263 Thiamin pyrophosphokinase, catalytic domain AMJ96_CH04281 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AMJ96_CH04282 PF00005 ABC transporter AMJ96_CH04282 PF16326 AMJ96_CH04282 AMJ96_CH04283 PF06472 AMJ96_CH04283 AMJ96_CH04284 PF04204 Homoserine O-succinyltransferase AMJ96_CH04285 PF01263 Aldose 1-epimerase AMJ96_CH04286 PF00392 Bacterial regulatory proteins, gntR family AMJ96_CH04286 PF07702 UTRA domain AMJ96_CH04287 PF01380 SIS domain AMJ96_CH04288 PF01979 Amidohydrolase family AMJ96_CH04289 PF13580 SIS domain AMJ96_CH04290 PF13924 AMJ96_CH04290 AMJ96_CH04291 PF01132 Elongation factor P (EF-P) OB domain AMJ96_CH04291 PF08207 Elongation factor P (EF-P) KOW-like domain AMJ96_CH04291 PF09285 Elongation factor P, C-terminal AMJ96_CH04292 PF00152 tRNA synthetases class II (D, K and N) AMJ96_CH04293 PF04055 Radical SAM superfamily AMJ96_CH04293 PF13353 4Fe-4S single cluster domain AMJ96_CH04294 PF00550 Phosphopantetheine attachment site AMJ96_CH04295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH04295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_CH04297 PF08893 AMJ96_CH04297 AMJ96_CH04299 PF00534 Glycosyl transferases group 1 AMJ96_CH04300 PF13440 AMJ96_CH04300 AMJ96_CH04300 PF14667 Polysaccharide biosynthesis C-terminal domain AMJ96_CH04301 PF00534 Glycosyl transferases group 1 AMJ96_CH04301 PF13439 Glycosyltransferase Family 4 AMJ96_CH04302 PF01037 AsnC family AMJ96_CH04303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04303 PF03466 LysR substrate binding domain AMJ96_CH04304 PF07063 Domain of unknown function (DUF1338) AMJ96_CH04305 PF01266 FAD dependent oxidoreductase AMJ96_CH04306 PF00171 Aldehyde dehydrogenase family AMJ96_CH04307 PF13343 Bacterial extracellular solute-binding protein AMJ96_CH04308 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04309 PF00005 ABC transporter AMJ96_CH04309 PF08402 TOBE domain AMJ96_CH04310 PF10091 Putative glucoamylase AMJ96_CH04312 PF07171 MlrC C-terminus AMJ96_CH04312 PF07364 Protein of unknown function (DUF1485) AMJ96_CH04314 PF00083 Sugar (and other) transporter AMJ96_CH04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04315 PF03466 LysR substrate binding domain AMJ96_CH04317 PF00829 Ribosomal prokaryotic L21 protein AMJ96_CH04318 PF01016 Ribosomal L27 protein AMJ96_CH04319 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH04320 PF13302 Acetyltransferase (GNAT) domain AMJ96_CH04321 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_CH04322 PF01018 GTP1/OBG AMJ96_CH04322 PF01926 50S ribosome-binding GTPase AMJ96_CH04323 PF00696 Amino acid kinase family AMJ96_CH04323 PF01472 PUA domain AMJ96_CH04324 PF00171 Aldehyde dehydrogenase family AMJ96_CH04325 PF01467 Cytidylyltransferase AMJ96_CH04326 PF13531 Bacterial extracellular solute-binding protein AMJ96_CH04327 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_CH04328 PF00005 ABC transporter AMJ96_CH04328 PF03459 TOBE domain AMJ96_CH04329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_CH04330 PF02410 Oligomerisation domain AMJ96_CH04331 PF02590 Predicted SPOUT methyltransferase AMJ96_CH04332 PF01551 Peptidase family M23 AMJ96_CH04333 PF03572 Peptidase family S41 AMJ96_CH04333 PF13180 PDZ domain AMJ96_CH04334 PF04748 Divergent polysaccharide deacetylase AMJ96_CH04335 PF00293 NUDIX domain AMJ96_CH04336 PF00210 Ferritin-like domain AMJ96_CH04337 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_CH04338 PF01336 OB-fold nucleic acid binding domain AMJ96_CH04338 PF02811 PHP domain AMJ96_CH04338 PF07733 Bacterial DNA polymerase III alpha subunit AMJ96_CH04338 PF14579 Helix-hairpin-helix motif AMJ96_CH04339 PF00817 impB/mucB/samB family AMJ96_CH04341 PF06262 Possibl zinc metallo-peptidase AMJ96_CH04342 PF08410 AMJ96_CH04342 AMJ96_CH04343 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_CH04345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_CH04346 PF00694 Aconitase C-terminal domain AMJ96_CH04347 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_CH04348 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_CH04349 PF01569 PAP2 superfamily AMJ96_CH04350 PF00083 Sugar (and other) transporter AMJ96_CH04351 PF02687 AMJ96_CH04351 AMJ96_CH04352 PF00005 ABC transporter AMJ96_CH04354 PF00245 Alkaline phosphatase AMJ96_CH04355 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJ96_CH04355 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMJ96_CH04356 PF13406 Transglycosylase SLT domain AMJ96_CH04357 PF00990 GGDEF domain AMJ96_CH04358 PF00484 Carbonic anhydrase AMJ96_CH04359 PF08543 Phosphomethylpyrimidine kinase AMJ96_CH04361 PF05088 AMJ96_CH04361 AMJ96_CH04362 PF11700 AMJ96_CH04362 AMJ96_CH04363 PF01808 AICARFT/IMPCHase bienzyme AMJ96_CH04363 PF02142 MGS-like domain AMJ96_CH04364 PF07940 Heparinase II/III-like protein AMJ96_CH04365 PF01029 NusB family AMJ96_CH04365 PF01189 NOL1/NOP2/sun family AMJ96_CH04366 PF01435 Peptidase family M48 AMJ96_CH04367 PF07896 Protein of unknown function (DUF1674) AMJ96_CH04368 PF00501 AMP-binding enzyme AMJ96_CH04368 PF13193 AMP-binding enzyme C-terminal domain AMJ96_CH04368 PF16177 AMJ96_CH04368 AMJ96_CH04369 PF06242 AMJ96_CH04369 AMJ96_CH04371 PF01168 Alanine racemase, N-terminal domain AMJ96_CH04372 PF00133 tRNA synthetases class I (I, L, M and V) AMJ96_CH04372 PF08264 Anticodon-binding domain of tRNA AMJ96_CH04372 PF13603 Leucyl-tRNA synthetase, Domain 2 AMJ96_CH04373 PF04390 Lipopolysaccharide-assembly AMJ96_CH04374 PF06144 DNA polymerase III, delta subunit AMJ96_CH04375 PF02195 ParB-like nuclease domain AMJ96_CH04376 PF13614 AAA domain AMJ96_CH04377 PF02527 rRNA small subunit methyltransferase G AMJ96_CH04378 PF01134 Glucose inhibited division protein A AMJ96_CH04378 PF13932 GidA associated domain 3 AMJ96_CH04379 PF01926 50S ribosome-binding GTPase AMJ96_CH04379 PF10396 GTP-binding protein TrmE N-terminus AMJ96_CH04379 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AMJ96_CH04380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_CH04380 PF07497 Rho termination factor, RNA-binding domain AMJ96_CH04380 PF07498 Rho termination factor, N-terminal domain AMJ96_CH04381 PF03653 AMJ96_CH04381 AMJ96_CH04382 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMJ96_PA00001 PF05016 Plasmid stabilisation system protein AMJ96_PA00002 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PA00003 PF00296 Luciferase-like monooxygenase AMJ96_PA00004 PF00296 Luciferase-like monooxygenase AMJ96_PA00005 PF01546 Peptidase family M20/M25/M40 AMJ96_PA00005 PF07687 Peptidase dimerisation domain AMJ96_PA00006 PF00583 Acetyltransferase (GNAT) family AMJ96_PA00007 PF00005 ABC transporter AMJ96_PA00007 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00008 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00009 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00010 PF00296 Luciferase-like monooxygenase AMJ96_PA00011 PF01323 DSBA-like thioredoxin domain AMJ96_PA00012 PF03358 NADPH-dependent FMN reductase AMJ96_PA00016 PF06821 Serine hydrolase AMJ96_PA00018 PF04752 AMJ96_PA00018 AMJ96_PA00019 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00020 PF00005 ABC transporter AMJ96_PA00021 PF09084 NMT1/THI5 like AMJ96_PA00022 PF13454 FAD-NAD(P)-binding AMJ96_PA00023 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PA00023 PF07729 FCD domain AMJ96_PA00024 PF00293 NUDIX domain AMJ96_PA00025 PF06684 Amino acid synthesis AMJ96_PA00026 PF12697 Alpha/beta hydrolase family AMJ96_PA00027 PF01613 Flavin reductase like domain AMJ96_PA00028 PF00296 Luciferase-like monooxygenase AMJ96_PA00029 PF00171 Aldehyde dehydrogenase family AMJ96_PA00030 PF07978 NIPSNAP AMJ96_PA00031 PF13416 Bacterial extracellular solute-binding protein AMJ96_PA00032 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00033 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00034 PF00005 ABC transporter AMJ96_PA00034 PF08402 TOBE domain AMJ96_PA00035 PF00171 Aldehyde dehydrogenase family AMJ96_PA00036 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMJ96_PA00037 PF01266 FAD dependent oxidoreductase AMJ96_PA00037 PF05199 GMC oxidoreductase AMJ96_PA00038 PF04321 RmlD substrate binding domain AMJ96_PA00039 PF00288 GHMP kinases N terminal domain AMJ96_PA00039 PF08544 GHMP kinases C terminal AMJ96_PA00040 PF00483 Nucleotidyl transferase AMJ96_PA00040 PF00485 Phosphoribulokinase / Uridine kinase family AMJ96_PA00040 PF13242 HAD-hyrolase-like AMJ96_PA00041 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PA00042 PF03706 AMJ96_PA00042 AMJ96_PA00044 PF00535 Glycosyl transferase family 2 AMJ96_PA00045 PF13580 SIS domain AMJ96_PA00048 PF00005 ABC transporter AMJ96_PA00048 PF08402 TOBE domain AMJ96_PA00049 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00050 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00051 PF01547 Bacterial extracellular solute-binding protein AMJ96_PA00052 PF05592 Bacterial alpha-L-rhamnosidase AMJ96_PA00052 PF08531 Alpha-L-rhamnosidase N-terminal domain AMJ96_PA00052 PF17389 AMJ96_PA00052 AMJ96_PA00052 PF17390 AMJ96_PA00052 AMJ96_PA00053 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00053 PF13377 Periplasmic binding protein-like domain AMJ96_PA00054 PF00701 Dihydrodipicolinate synthetase family AMJ96_PA00055 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PA00055 PF07729 FCD domain AMJ96_PA00056 PF00557 Metallopeptidase family M24 AMJ96_PA00056 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_PA00057 PF01120 Alpha-L-fucosidase AMJ96_PA00058 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00058 PF13377 Periplasmic binding protein-like domain AMJ96_PA00059 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00060 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00061 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00061 PF12911 AMJ96_PA00061 AMJ96_PA00062 PF00005 ABC transporter AMJ96_PA00062 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00063 PF00005 ABC transporter AMJ96_PA00063 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00064 PF04962 KduI/IolB family AMJ96_PA00065 PF01229 Glycosyl hydrolases family 39 AMJ96_PA00066 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00067 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PA00069 PF00920 Dehydratase family AMJ96_PA00070 PF03737 Demethylmenaquinone methyltransferase AMJ96_PA00071 PF00873 AcrB/AcrD/AcrF family AMJ96_PA00072 PF13437 HlyD family secretion protein AMJ96_PA00072 PF13533 Biotin-lipoyl like AMJ96_PA00074 PF00106 short chain dehydrogenase AMJ96_PA00075 PF16576 AMJ96_PA00075 AMJ96_PA00076 PF00072 Response regulator receiver domain AMJ96_PA00076 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00077 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00078 PF02321 Outer membrane efflux protein AMJ96_PA00079 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_PA00080 PF01575 MaoC like domain AMJ96_PA00081 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMJ96_PA00081 PF00364 Biotin-requiring enzyme AMJ96_PA00081 PF02785 Biotin carboxylase C-terminal domain AMJ96_PA00081 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_PA00082 PF01039 Carboxyl transferase domain AMJ96_PA00083 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00083 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00083 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00084 PF12625 AMJ96_PA00084 AMJ96_PA00084 PF12833 Helix-turn-helix domain AMJ96_PA00085 PF00106 short chain dehydrogenase AMJ96_PA00086 PF00108 Thiolase, N-terminal domain AMJ96_PA00086 PF02803 Thiolase, C-terminal domain AMJ96_PA00087 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00087 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00087 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00088 PF00676 Dehydrogenase E1 component AMJ96_PA00088 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal AMJ96_PA00089 PF02779 Transketolase, pyrimidine binding domain AMJ96_PA00089 PF02780 Transketolase, C-terminal domain AMJ96_PA00090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJ96_PA00090 PF00364 Biotin-requiring enzyme AMJ96_PA00090 PF02817 e3 binding domain AMJ96_PA00091 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_PA00091 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PA00095 PF01145 SPFH domain / Band 7 family AMJ96_PA00096 PF01957 NfeD-like C-terminal, partner-binding AMJ96_PA00097 PF00563 EAL domain AMJ96_PA00097 PF00990 GGDEF domain AMJ96_PA00097 PF01590 GAF domain AMJ96_PA00097 PF08447 PAS fold AMJ96_PA00098 PF00005 ABC transporter AMJ96_PA00098 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00099 PF00005 ABC transporter AMJ96_PA00099 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00100 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00101 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00102 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00103 PF01614 Bacterial transcriptional regulator AMJ96_PA00103 PF09339 IclR helix-turn-helix domain AMJ96_PA00104 PF03737 Demethylmenaquinone methyltransferase AMJ96_PA00105 PF00924 Mechanosensitive ion channel AMJ96_PA00107 PF13416 Bacterial extracellular solute-binding protein AMJ96_PA00108 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00109 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00110 PF00005 ABC transporter AMJ96_PA00110 PF08402 TOBE domain AMJ96_PA00111 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_PA00112 PF00455 AMJ96_PA00112 AMJ96_PA00112 PF08220 DeoR-like helix-turn-helix domain AMJ96_PA00113 PF08282 haloacid dehalogenase-like hydrolase AMJ96_PA00114 PF13551 Winged helix-turn helix AMJ96_PA00117 PF00005 ABC transporter AMJ96_PA00117 PF00664 ABC transporter transmembrane region AMJ96_PA00118 PF00155 Aminotransferase class I and II AMJ96_PA00119 PF00571 CBS domain AMJ96_PA00119 PF04972 BON domain AMJ96_PA00120 PF01578 AMJ96_PA00120 AMJ96_PA00120 PF16327 AMJ96_PA00120 AMJ96_PA00121 PF03100 CcmE AMJ96_PA00123 PF00027 Cyclic nucleotide-binding domain AMJ96_PA00123 PF13545 Crp-like helix-turn-helix domain AMJ96_PA00124 PF03597 AMJ96_PA00124 AMJ96_PA00125 PF00122 E1-E2 ATPase AMJ96_PA00125 PF00403 Heavy-metal-associated domain AMJ96_PA00125 PF00702 haloacid dehalogenase-like hydrolase AMJ96_PA00126 PF05751 AMJ96_PA00126 AMJ96_PA00127 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJ96_PA00127 PF12801 AMJ96_PA00127 AMJ96_PA00127 PF13746 4Fe-4S dicluster domain AMJ96_PA00129 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJ96_PA00129 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJ96_PA00130 PF05545 AMJ96_PA00130 AMJ96_PA00131 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AMJ96_PA00132 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PA00133 PF00027 Cyclic nucleotide-binding domain AMJ96_PA00133 PF13545 Crp-like helix-turn-helix domain AMJ96_PA00134 PF00072 Response regulator receiver domain AMJ96_PA00134 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00134 PF00989 PAS fold AMJ96_PA00134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00134 PF08448 PAS fold AMJ96_PA00135 PF00127 Copper binding proteins, plastocyanin/azurin family AMJ96_PA00136 PF07987 Domain of unkown function (DUF1775) AMJ96_PA00137 PF04234 CopC domain AMJ96_PA00137 PF05425 AMJ96_PA00137 AMJ96_PA00138 PF00293 NUDIX domain AMJ96_PA00141 PF00510 Cytochrome c oxidase subunit III AMJ96_PA00143 PF00034 Cytochrome c AMJ96_PA00144 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PA00145 PF07728 AAA domain (dynein-related subfamily) AMJ96_PA00145 PF08406 AMJ96_PA00145 AMJ96_PA00146 PF00092 von Willebrand factor type A domain AMJ96_PA00147 PF04055 Radical SAM superfamily AMJ96_PA00147 PF06969 HemN C-terminal domain AMJ96_PA00148 PF10006 AMJ96_PA00148 AMJ96_PA00150 PF10006 AMJ96_PA00150 AMJ96_PA00151 PF01883 Domain of unknown function DUF59 AMJ96_PA00152 PF05940 AMJ96_PA00152 AMJ96_PA00153 PF00394 Multicopper oxidase AMJ96_PA00153 PF07732 Multicopper oxidase AMJ96_PA00154 PF03781 Sulfatase-modifying factor enzyme 1 AMJ96_PA00155 PF00027 Cyclic nucleotide-binding domain AMJ96_PA00155 PF13545 Crp-like helix-turn-helix domain AMJ96_PA00156 PF07298 AMJ96_PA00156 AMJ96_PA00158 PF00072 Response regulator receiver domain AMJ96_PA00158 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00159 PF00294 pfkB family carbohydrate kinase AMJ96_PA00160 PF05025 RbsD / FucU transport protein family AMJ96_PA00161 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00161 PF13377 Periplasmic binding protein-like domain AMJ96_PA00162 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00163 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00164 PF13416 Bacterial extracellular solute-binding protein AMJ96_PA00165 PF00005 ABC transporter AMJ96_PA00165 PF08402 TOBE domain AMJ96_PA00166 PF00582 Universal stress protein family AMJ96_PA00167 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMJ96_PA00168 PF12900 Pyridoxamine 5'-phosphate oxidase AMJ96_PA00169 PF00582 Universal stress protein family AMJ96_PA00172 PF02308 AMJ96_PA00172 AMJ96_PA00172 PF13194 AMJ96_PA00172 AMJ96_PA00174 PF00857 Isochorismatase family AMJ96_PA00175 PF00563 EAL domain AMJ96_PA00175 PF00990 GGDEF domain AMJ96_PA00175 PF05228 AMJ96_PA00175 AMJ96_PA00176 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00177 PF00107 Zinc-binding dehydrogenase AMJ96_PA00177 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00179 PF00892 EamA-like transporter family AMJ96_PA00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00180 PF03466 LysR substrate binding domain AMJ96_PA00181 PF12833 Helix-turn-helix domain AMJ96_PA00182 PF05853 Prokaryotic protein of unknown function (DUF849) AMJ96_PA00183 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00183 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJ96_PA00183 PF13279 Thioesterase-like superfamily AMJ96_PA00184 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PA00184 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PA00184 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PA00185 PF13380 CoA binding domain AMJ96_PA00185 PF13549 ATP-grasp domain AMJ96_PA00185 PF13607 Succinyl-CoA ligase like flavodoxin domain AMJ96_PA00186 PF00378 Enoyl-CoA hydratase/isomerase family AMJ96_PA00187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00188 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00189 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00189 PF12911 AMJ96_PA00189 AMJ96_PA00190 PF00005 ABC transporter AMJ96_PA00190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PA00191 PF13443 Cro/C1-type HTH DNA-binding domain AMJ96_PA00192 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PA00193 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMJ96_PA00193 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMJ96_PA00194 PF07859 alpha/beta hydrolase fold AMJ96_PA00195 PF04542 Sigma-70 region 2 AMJ96_PA00195 PF08281 Sigma-70, region 4 AMJ96_PA00196 PF00092 von Willebrand factor type A domain AMJ96_PA00196 PF12034 AMJ96_PA00196 AMJ96_PA00196 PF12450 AMJ96_PA00196 AMJ96_PA00197 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_PA00198 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00198 PF13377 Periplasmic binding protein-like domain AMJ96_PA00199 PF00107 Zinc-binding dehydrogenase AMJ96_PA00199 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJ96_PA00200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PA00201 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PA00202 PF13671 AAA domain AMJ96_PA00203 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PA00203 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PA00204 PF00005 ABC transporter AMJ96_PA00205 PF02653 AMJ96_PA00205 AMJ96_PA00206 PF13407 Periplasmic binding protein domain AMJ96_PA00208 PF00296 Luciferase-like monooxygenase AMJ96_PA00210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PA00210 PF00672 HAMP domain AMJ96_PA00210 PF12729 AMJ96_PA00210 AMJ96_PA00211 PF00474 Sodium:solute symporter family AMJ96_PA00212 PF11755 AMJ96_PA00212 AMJ96_PA00213 PF00072 Response regulator receiver domain AMJ96_PA00213 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PA00214 PF07730 Histidine kinase AMJ96_PA00214 PF17200 AMJ96_PA00214 AMJ96_PA00215 PF01037 AsnC family AMJ96_PA00215 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PA00216 PF00005 ABC transporter AMJ96_PA00217 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00218 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00219 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00220 PF02574 Homocysteine S-methyltransferase AMJ96_PA00221 PF12802 MarR family AMJ96_PA00222 PF00571 CBS domain AMJ96_PA00222 PF00654 Voltage gated chloride channel AMJ96_PA00223 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PA00224 PF01850 PIN domain AMJ96_PA00225 PF00005 ABC transporter AMJ96_PA00226 PF09084 NMT1/THI5 like AMJ96_PA00227 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00228 PF00296 Luciferase-like monooxygenase AMJ96_PA00229 PF01614 Bacterial transcriptional regulator AMJ96_PA00229 PF09339 IclR helix-turn-helix domain AMJ96_PA00230 PF13407 Periplasmic binding protein domain AMJ96_PA00231 PF00005 ABC transporter AMJ96_PA00232 PF02653 AMJ96_PA00232 AMJ96_PA00233 PF02653 AMJ96_PA00233 AMJ96_PA00234 PF04909 Amidohydrolase AMJ96_PA00235 PF01168 Alanine racemase, N-terminal domain AMJ96_PA00235 PF14031 Putative serine dehydratase domain AMJ96_PA00236 PF01042 Endoribonuclease L-PSP AMJ96_PA00237 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMJ96_PA00239 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00239 PF07582 AP endonuclease family 2 C terminus AMJ96_PA00240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PA00240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PA00241 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PA00242 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00243 PF00005 ABC transporter AMJ96_PA00244 PF02653 AMJ96_PA00244 AMJ96_PA00245 PF02653 AMJ96_PA00245 AMJ96_PA00246 PF13407 Periplasmic binding protein domain AMJ96_PA00247 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00247 PF13407 Periplasmic binding protein domain AMJ96_PA00248 PF03737 Demethylmenaquinone methyltransferase AMJ96_PA00249 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PA00250 PF00005 ABC transporter AMJ96_PA00251 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00252 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00253 PF00106 short chain dehydrogenase AMJ96_PA00254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00254 PF03466 LysR substrate binding domain AMJ96_PA00255 PF00155 Aminotransferase class I and II AMJ96_PA00256 PF03746 LamB/YcsF family AMJ96_PA00257 PF02626 Allophanate hydrolase subunit 2 AMJ96_PA00258 PF02682 Allophanate hydrolase subunit 1 AMJ96_PA00260 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMJ96_PA00260 PF02785 Biotin carboxylase C-terminal domain AMJ96_PA00260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJ96_PA00261 PF00364 Biotin-requiring enzyme AMJ96_PA00262 PF05016 Plasmid stabilisation system protein AMJ96_PA00263 PF01402 Ribbon-helix-helix protein, copG family AMJ96_PA00264 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00264 PF13377 Periplasmic binding protein-like domain AMJ96_PA00265 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00266 PF13416 Bacterial extracellular solute-binding protein AMJ96_PA00267 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PA00269 PF00005 ABC transporter AMJ96_PA00269 PF08402 TOBE domain AMJ96_PA00270 PF05199 GMC oxidoreductase AMJ96_PA00271 PF03976 Polyphosphate kinase 2 (PPK2) AMJ96_PA00272 PF00248 Aldo/keto reductase family AMJ96_PA00273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PA00273 PF03466 LysR substrate binding domain AMJ96_PA00274 PF16242 AMJ96_PA00274 AMJ96_PA00275 PF13532 2OG-Fe(II) oxygenase superfamily AMJ96_PA00277 PF01165 Ribosomal protein S21 AMJ96_PA00280 PF13777 AMJ96_PA00280 AMJ96_PA00281 PF00072 Response regulator receiver domain AMJ96_PA00281 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PA00282 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PA00282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PA00283 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PA00284 PF04290 AMJ96_PA00284 AMJ96_PA00285 PF06808 AMJ96_PA00285 AMJ96_PA00286 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_PA00287 PF08501 Shikimate dehydrogenase substrate binding domain AMJ96_PA00288 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_PA00288 PF01261 Xylose isomerase-like TIM barrel AMJ96_PA00288 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AMJ96_PA00289 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PA00289 PF13377 Periplasmic binding protein-like domain AMJ96_PA00290 PF00107 Zinc-binding dehydrogenase AMJ96_PA00290 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PA00291 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PA00292 PF01547 Bacterial extracellular solute-binding protein AMJ96_PA00293 PF00294 pfkB family carbohydrate kinase AMJ96_PA00294 PF08013 Tagatose 6 phosphate kinase AMJ96_PA00295 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PA00296 PF00106 short chain dehydrogenase AMJ96_PA00297 PF02653 AMJ96_PA00297 AMJ96_PA00298 PF00005 ABC transporter AMJ96_PA00299 PF13407 Periplasmic binding protein domain AMJ96_PA00300 PF02311 AraC-like ligand binding domain AMJ96_PA00300 PF12833 Helix-turn-helix domain AMJ96_PA00301 PF02358 Trehalose-phosphatase AMJ96_PA00303 PF13614 AAA domain AMJ96_PA00304 PF02195 ParB-like nuclease domain AMJ96_PA00304 PF07506 AMJ96_PA00304 AMJ96_PA00305 PF03428 AMJ96_PA00305 AMJ96_PA00305 PF11800 AMJ96_PA00305 AMJ96_PB00002 PF01609 Transposase DDE domain AMJ96_PB00003 PF13683 AMJ96_PB00003 AMJ96_PB00004 PF00665 Integrase core domain AMJ96_PB00004 PF13011 AMJ96_PB00004 AMJ96_PB00006 PF00239 Resolvase, N terminal domain AMJ96_PB00009 PF00589 Phage integrase family AMJ96_PB00012 PF08937 MTH538 TIR-like domain (DUF1863) AMJ96_PB00013 PF14015 AMJ96_PB00013 AMJ96_PB00014 PF13281 AMJ96_PB00014 AMJ96_PB00015 PF00294 pfkB family carbohydrate kinase AMJ96_PB00016 PF13676 TIR domain AMJ96_PB00018 PF06508 Queuosine biosynthesis protein QueC AMJ96_PB00019 PF08937 MTH538 TIR-like domain (DUF1863) AMJ96_PB00022 PF13676 TIR domain AMJ96_PB00024 PF13175 AAA ATPase domain AMJ96_PB00025 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AMJ96_PB00026 PF09407 Protein of unknown function (DUF2005) AMJ96_PB00026 PF13338 AMJ96_PB00026 AMJ96_PB00027 PF06169 Protein of unknown function (DUF982) AMJ96_PB00028 PF10002 AMJ96_PB00028 AMJ96_PB00030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PB00031 PF01381 Helix-turn-helix AMJ96_PB00032 PF03640 AMJ96_PB00032 AMJ96_PB00037 PF12281 AMJ96_PB00037 AMJ96_PB00039 PF00582 Universal stress protein family AMJ96_PB00045 PF13180 PDZ domain AMJ96_PB00045 PF13365 Trypsin-like peptidase domain AMJ96_PB00046 PF04972 BON domain AMJ96_PB00047 PF00072 Response regulator receiver domain AMJ96_PB00048 PF00195 Chalcone and stilbene synthases, N-terminal domain AMJ96_PB00048 PF02797 Chalcone and stilbene synthases, C-terminal domain AMJ96_PB00049 PF04972 BON domain AMJ96_PB00051 PF00872 AMJ96_PB00051 AMJ96_PB00052 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMJ96_PB00053 PF00753 Metallo-beta-lactamase superfamily AMJ96_PB00057 PF01382 Avidin family AMJ96_PB00061 PF07732 Multicopper oxidase AMJ96_PB00062 PF01872 RibD C-terminal domain AMJ96_PB00063 PF00106 short chain dehydrogenase AMJ96_PB00064 PF00106 short chain dehydrogenase AMJ96_PB00066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00066 PF01609 Transposase DDE domain AMJ96_PB00068 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PB00068 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMJ96_PB00068 PF07691 PA14 domain AMJ96_PB00068 PF14310 Fibronectin type III-like domain AMJ96_PB00070 PF06339 AMJ96_PB00070 AMJ96_PB00071 PF03435 Saccharopine dehydrogenase AMJ96_PB00071 PF16653 AMJ96_PB00071 AMJ96_PB00072 PF00589 Phage integrase family AMJ96_PB00073 PF00589 Phage integrase family AMJ96_PB00074 PF01820 D-ala D-ala ligase N-terminus AMJ96_PB00074 PF07478 D-ala D-ala ligase C-terminus AMJ96_PB00075 PF01678 Diaminopimelate epimerase AMJ96_PB00076 PF01527 Transposase AMJ96_PB00077 PF05717 AMJ96_PB00077 AMJ96_PB00078 PF03050 AMJ96_PB00078 AMJ96_PB00078 PF13005 AMJ96_PB00078 AMJ96_PB00078 PF13007 AMJ96_PB00078 AMJ96_PB00078 PF13817 AMJ96_PB00078 AMJ96_PB00079 PF13535 ATP-grasp domain AMJ96_PB00085 PF07536 AMJ96_PB00085 AMJ96_PB00085 PF13426 PAS domain AMJ96_PB00089 PF06226 AMJ96_PB00089 AMJ96_PB00098 PF01514 Secretory protein of YscJ/FliF family AMJ96_PB00100 PF06635 AMJ96_PB00100 AMJ96_PB00101 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJ96_PB00101 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJ96_PB00102 PF01052 Surface presentation of antigens (SPOA) AMJ96_PB00103 PF00813 AMJ96_PB00103 AMJ96_PB00104 PF01313 AMJ96_PB00104 AMJ96_PB00105 PF01311 AMJ96_PB00105 AMJ96_PB00106 PF01312 FlhB HrpN YscU SpaS Family AMJ96_PB00107 PF03211 Pectate lyase AMJ96_PB00108 PF00771 FHIPEP family AMJ96_PB00113 PF01381 Helix-turn-helix AMJ96_PB00116 PF14232 Domain of unknown function (DUF4334) AMJ96_PB00118 PF11202 AMJ96_PB00118 AMJ96_PB00118 PF15608 AMJ96_PB00118 AMJ96_PB00119 PF12500 AMJ96_PB00119 AMJ96_PB00119 PF15609 AMJ96_PB00119 AMJ96_PB00120 PF13276 AMJ96_PB00120 AMJ96_PB00120 PF13683 AMJ96_PB00120 AMJ96_PB00121 PF01527 Transposase AMJ96_PB00123 PF00264 Common central domain of tyrosinase AMJ96_PB00123 PF12142 Polyphenol oxidase middle domain AMJ96_PB00128 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PB00128 PF07729 FCD domain AMJ96_PB00129 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PB00129 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PB00130 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PB00132 PF00561 alpha/beta hydrolase fold AMJ96_PB00133 PF13407 Periplasmic binding protein domain AMJ96_PB00134 PF00005 ABC transporter AMJ96_PB00135 PF02653 AMJ96_PB00135 AMJ96_PB00136 PF02653 AMJ96_PB00136 AMJ96_PB00137 PF00171 Aldehyde dehydrogenase family AMJ96_PB00139 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AMJ96_PB00141 PF13384 Homeodomain-like domain AMJ96_PB00142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00142 PF12729 AMJ96_PB00142 AMJ96_PB00146 PF12833 Helix-turn-helix domain AMJ96_PB00146 PF14525 AMJ96_PB00146 AMJ96_PB00147 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PB00148 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00148 PF00672 HAMP domain AMJ96_PB00149 PF13407 Periplasmic binding protein domain AMJ96_PB00150 PF03050 AMJ96_PB00150 AMJ96_PB00150 PF13005 AMJ96_PB00150 AMJ96_PB00150 PF13007 AMJ96_PB00150 AMJ96_PB00150 PF13817 AMJ96_PB00150 AMJ96_PB00151 PF05717 AMJ96_PB00151 AMJ96_PB00152 PF01527 Transposase AMJ96_PB00153 PF00563 EAL domain AMJ96_PB00153 PF00989 PAS fold AMJ96_PB00153 PF00990 GGDEF domain AMJ96_PB00153 PF08448 PAS fold AMJ96_PB00155 PF00753 Metallo-beta-lactamase superfamily AMJ96_PB00156 PF00107 Zinc-binding dehydrogenase AMJ96_PB00156 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00157 PF00753 Metallo-beta-lactamase superfamily AMJ96_PB00158 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PB00158 PF07729 FCD domain AMJ96_PB00159 PF12697 Alpha/beta hydrolase family AMJ96_PB00161 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PB00162 PF01613 Flavin reductase like domain AMJ96_PB00163 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PB00164 PF00296 Luciferase-like monooxygenase AMJ96_PB00165 PF13407 Periplasmic binding protein domain AMJ96_PB00166 PF00155 Aminotransferase class I and II AMJ96_PB00167 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PB00168 PF03358 NADPH-dependent FMN reductase AMJ96_PB00169 PF00925 GTP cyclohydrolase II AMJ96_PB00169 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMJ96_PB00170 PF00107 Zinc-binding dehydrogenase AMJ96_PB00170 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00172 PF00300 Histidine phosphatase superfamily (branch 1) AMJ96_PB00173 PF13407 Periplasmic binding protein domain AMJ96_PB00174 PF00005 ABC transporter AMJ96_PB00175 PF02653 AMJ96_PB00175 AMJ96_PB00176 PF02653 AMJ96_PB00176 AMJ96_PB00177 PF00107 Zinc-binding dehydrogenase AMJ96_PB00177 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00178 PF03992 Antibiotic biosynthesis monooxygenase AMJ96_PB00179 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PB00180 PF12833 Helix-turn-helix domain AMJ96_PB00180 PF14525 AMJ96_PB00180 AMJ96_PB00181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PB00181 PF00672 HAMP domain AMJ96_PB00181 PF08376 Nitrate and nitrite sensing AMJ96_PB00182 PF00563 EAL domain AMJ96_PB00182 PF00990 GGDEF domain AMJ96_PB00182 PF08448 PAS fold AMJ96_PB00184 PF08401 AMJ96_PB00184 AMJ96_PB00188 PF01464 Transglycosylase SLT domain AMJ96_PB00189 PF04956 AMJ96_PB00189 AMJ96_PB00190 PF05101 AMJ96_PB00190 AMJ96_PB00191 PF03135 AMJ96_PB00191 AMJ96_PB00192 PF07996 Type IV secretion system proteins AMJ96_PB00194 PF04610 AMJ96_PB00194 AMJ96_PB00196 PF04335 VirB8 protein AMJ96_PB00197 PF03524 Conjugal transfer protein AMJ96_PB00198 PF03743 Bacterial conjugation TrbI-like protein AMJ96_PB00199 PF00437 Type II/IV secretion system protein AMJ96_PB00200 PF13470 AMJ96_PB00200 AMJ96_PB00203 PF06666 AMJ96_PB00203 AMJ96_PB00204 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PB00205 PF01850 PIN domain AMJ96_PB00206 PF05284 AMJ96_PB00206 AMJ96_PB00208 PF05406 WGR domain AMJ96_PB00210 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PB00211 PF02534 Type IV secretory system Conjugative DNA transfer AMJ96_PB00212 PF06412 AMJ96_PB00212 AMJ96_PB00213 PF07820 AMJ96_PB00213 AMJ96_PB00214 PF03389 MobA/MobL family AMJ96_PB00214 PF13604 AAA domain AMJ96_PB00218 PF12833 Helix-turn-helix domain AMJ96_PB00219 PF07690 Major Facilitator Superfamily AMJ96_PB00221 PF01381 Helix-turn-helix AMJ96_PB00222 PF09587 Bacterial capsule synthesis protein PGA_cap AMJ96_PB00223 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PB00224 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PB00225 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PB00226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00226 PF03466 LysR substrate binding domain AMJ96_PB00228 PF12244 AMJ96_PB00228 AMJ96_PB00231 PF12728 Helix-turn-helix domain AMJ96_PB00232 PF09361 AMJ96_PB00232 AMJ96_PB00234 PF06871 AMJ96_PB00234 AMJ96_PB00237 PF00560 Leucine Rich Repeat AMJ96_PB00239 PF05954 Phage late control gene D protein (GPD) AMJ96_PB00241 PF06996 AMJ96_PB00241 AMJ96_PB00242 PF05947 AMJ96_PB00242 AMJ96_PB00243 PF04965 Gene 25-like lysozyme AMJ96_PB00244 PF05638 Protein of unknown function (DUF796) AMJ96_PB00245 PF05943 AMJ96_PB00245 AMJ96_PB00246 PF05591 AMJ96_PB00246 AMJ96_PB00247 PF06812 AMJ96_PB00247 AMJ96_PB00251 PF12762 AMJ96_PB00251 AMJ96_PB00253 PF05936 AMJ96_PB00253 AMJ96_PB00254 PF00498 FHA domain AMJ96_PB00255 PF00691 OmpA family AMJ96_PB00255 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AMJ96_PB00256 PF06744 AMJ96_PB00256 AMJ96_PB00256 PF06761 AMJ96_PB00256 AMJ96_PB00256 PF14331 AMJ96_PB00256 AMJ96_PB00259 PF13289 AMJ96_PB00259 AMJ96_PB00260 PF02543 Carbamoyltransferase AMJ96_PB00261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00261 PF03466 LysR substrate binding domain AMJ96_PB00262 PF04055 Radical SAM superfamily AMJ96_PB00268 PF01527 Transposase AMJ96_PB00269 PF02902 Ulp1 protease family, C-terminal catalytic domain AMJ96_PB00270 PF01548 AMJ96_PB00270 AMJ96_PB00270 PF02371 AMJ96_PB00270 AMJ96_PB00272 PF00665 Integrase core domain AMJ96_PB00272 PF13936 Helix-turn-helix domain AMJ96_PB00273 PF13551 Winged helix-turn helix AMJ96_PB00274 PF00364 Biotin-requiring enzyme AMJ96_PB00276 PF00484 Carbonic anhydrase AMJ96_PB00278 PF05717 AMJ96_PB00278 AMJ96_PB00280 PF01545 Cation efflux family AMJ96_PB00283 PF03270 Protein of unknown function, DUF269 AMJ96_PB00284 PF02579 Dinitrogenase iron-molybdenum cofactor AMJ96_PB00285 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00286 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00287 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00287 PF11844 Domain of unknown function (DUF3364) AMJ96_PB00288 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00289 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00291 PF13577 SnoaL-like domain AMJ96_PB00292 PF13459 4Fe-4S single cluster domain AMJ96_PB00293 PF00067 Cytochrome P450 AMJ96_PB00295 PF00027 Cyclic nucleotide-binding domain AMJ96_PB00295 PF13545 Crp-like helix-turn-helix domain AMJ96_PB00297 PF08534 Redoxin AMJ96_PB00298 PF00309 AMJ96_PB00298 AMJ96_PB00298 PF04552 Sigma-54, DNA binding domain AMJ96_PB00298 PF04963 Sigma-54 factor, core binding domain AMJ96_PB00300 PF01521 Iron-sulphur cluster biosynthesis AMJ96_PB00302 PF00266 Aminotransferase class-V AMJ96_PB00303 PF03206 AMJ96_PB00303 AMJ96_PB00304 PF01012 Electron transfer flavoprotein domain AMJ96_PB00305 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_PB00305 PF01012 Electron transfer flavoprotein domain AMJ96_PB00306 PF12831 FAD dependent oxidoreductase AMJ96_PB00307 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMJ96_PB00308 PF00158 Sigma-54 interaction domain AMJ96_PB00308 PF01590 GAF domain AMJ96_PB00308 PF02954 Bacterial regulatory protein, Fis family AMJ96_PB00309 PF02579 Dinitrogenase iron-molybdenum cofactor AMJ96_PB00309 PF04055 Radical SAM superfamily AMJ96_PB00310 PF12838 4Fe-4S dicluster domain AMJ96_PB00311 PF04319 AMJ96_PB00311 AMJ96_PB00312 PF06988 NifT/FixU protein AMJ96_PB00313 PF13289 AMJ96_PB00313 AMJ96_PB00314 PF00155 Aminotransferase class I and II AMJ96_PB00315 PF01583 Adenylylsulphate kinase AMJ96_PB00317 PF01381 Helix-turn-helix AMJ96_PB00318 PF00665 Integrase core domain AMJ96_PB00320 PF13560 Helix-turn-helix domain AMJ96_PB00323 PF13817 AMJ96_PB00323 AMJ96_PB00325 PF00239 Resolvase, N terminal domain AMJ96_PB00325 PF07508 Recombinase AMJ96_PB00326 PF13005 AMJ96_PB00326 AMJ96_PB00326 PF13007 AMJ96_PB00326 AMJ96_PB00327 PF05717 AMJ96_PB00327 AMJ96_PB00328 PF01527 Transposase AMJ96_PB00330 PF00348 Polyprenyl synthetase AMJ96_PB00331 PF01070 FMN-dependent dehydrogenase AMJ96_PB00334 PF00067 Cytochrome P450 AMJ96_PB00335 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PB00336 PF00067 Cytochrome P450 AMJ96_PB00336 PF13459 4Fe-4S single cluster domain AMJ96_PB00337 PF00067 Cytochrome P450 AMJ96_PB00339 PF01527 Transposase AMJ96_PB00340 PF13276 AMJ96_PB00340 AMJ96_PB00340 PF13683 AMJ96_PB00340 AMJ96_PB00341 PF11089 AMJ96_PB00341 AMJ96_PB00344 PF04891 AMJ96_PB00344 AMJ96_PB00345 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00347 PF13586 AMJ96_PB00347 AMJ96_PB00348 PF04055 Radical SAM superfamily AMJ96_PB00348 PF06969 HemN C-terminal domain AMJ96_PB00352 PF05050 Methyltransferase FkbM domain AMJ96_PB00354 PF01695 IstB-like ATP binding protein AMJ96_PB00356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00356 PF03466 LysR substrate binding domain AMJ96_PB00357 PF07883 Cupin domain AMJ96_PB00358 PF01061 AMJ96_PB00358 AMJ96_PB00359 PF00005 ABC transporter AMJ96_PB00360 PF05401 Nodulation protein S (NodS) AMJ96_PB00361 PF00535 Glycosyl transferase family 2 AMJ96_PB00361 PF03142 AMJ96_PB00361 AMJ96_PB00362 PF01522 Polysaccharide deacetylase AMJ96_PB00363 PF13340 AMJ96_PB00363 AMJ96_PB00368 PF00027 Cyclic nucleotide-binding domain AMJ96_PB00368 PF13545 Crp-like helix-turn-helix domain AMJ96_PB00369 PF03597 AMJ96_PB00369 AMJ96_PB00370 PF00122 E1-E2 ATPase AMJ96_PB00370 PF00403 Heavy-metal-associated domain AMJ96_PB00370 PF00702 haloacid dehalogenase-like hydrolase AMJ96_PB00371 PF05751 AMJ96_PB00371 AMJ96_PB00372 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJ96_PB00372 PF12801 AMJ96_PB00372 AMJ96_PB00372 PF13746 4Fe-4S dicluster domain AMJ96_PB00374 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJ96_PB00374 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJ96_PB00375 PF05545 AMJ96_PB00375 AMJ96_PB00376 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AMJ96_PB00377 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PB00379 PF00127 Copper binding proteins, plastocyanin/azurin family AMJ96_PB00381 PF04055 Radical SAM superfamily AMJ96_PB00381 PF06969 HemN C-terminal domain AMJ96_PB00383 PF09361 AMJ96_PB00383 AMJ96_PB00385 PF12838 4Fe-4S dicluster domain AMJ96_PB00386 PF05082 Rop-like AMJ96_PB00387 PF03270 Protein of unknown function, DUF269 AMJ96_PB00388 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00389 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00389 PF11844 Domain of unknown function (DUF3364) AMJ96_PB00390 PF00148 Nitrogenase component 1 type Oxidoreductase AMJ96_PB00391 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJ96_PB00393 PF16363 AMJ96_PB00393 AMJ96_PB00395 PF02474 AMJ96_PB00395 AMJ96_PB00398 PF13276 AMJ96_PB00398 AMJ96_PB00398 PF13683 AMJ96_PB00398 AMJ96_PB00399 PF01527 Transposase AMJ96_PB00401 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMJ96_PB00402 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMJ96_PB00403 PF07883 Cupin domain AMJ96_PB00404 PF09334 tRNA synthetases class I (M) AMJ96_PB00406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00406 PF03466 LysR substrate binding domain AMJ96_PB00408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PB00408 PF03466 LysR substrate binding domain AMJ96_PB00409 PF00296 Luciferase-like monooxygenase AMJ96_PB00411 PF01527 Transposase AMJ96_PB00413 PF04073 Aminoacyl-tRNA editing domain AMJ96_PB00416 PF13276 AMJ96_PB00416 AMJ96_PB00416 PF13683 AMJ96_PB00416 AMJ96_PB00417 PF01527 Transposase AMJ96_PB00418 PF01526 AMJ96_PB00418 AMJ96_PB00419 PF13437 HlyD family secretion protein AMJ96_PB00420 PF00005 ABC transporter AMJ96_PB00420 PF00664 ABC transporter transmembrane region AMJ96_PB00420 PF03412 Peptidase C39 family AMJ96_PB00421 PF13683 AMJ96_PB00421 AMJ96_PB00422 PF03270 Protein of unknown function, DUF269 AMJ96_PB00426 PF00230 Major intrinsic protein AMJ96_PB00427 PF09361 AMJ96_PB00427 AMJ96_PB00428 PF00156 Phosphoribosyl transferase domain AMJ96_PB00429 PF04055 Radical SAM superfamily AMJ96_PB00429 PF13186 Iron-sulfur cluster-binding domain AMJ96_PB00429 PF13353 4Fe-4S single cluster domain AMJ96_PB00432 PF14907 Uncharacterised nucleotidyltransferase AMJ96_PB00433 PF00156 Phosphoribosyl transferase domain AMJ96_PB00433 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMJ96_PB00434 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PB00437 PF13614 AAA domain AMJ96_PB00438 PF02195 ParB-like nuclease domain AMJ96_PB00438 PF07506 AMJ96_PB00438 AMJ96_PB00440 PF03428 AMJ96_PB00440 AMJ96_PB00440 PF11800 AMJ96_PB00440 AMJ96_PC00001 PF07756 AMJ96_PC00001 AMJ96_PC00001 PF11972 AMJ96_PC00001 AMJ96_PC00002 PF01027 Inhibitor of apoptosis-promoting Bax1 AMJ96_PC00004 PF04542 Sigma-70 region 2 AMJ96_PC00004 PF08281 Sigma-70, region 4 AMJ96_PC00006 PF00376 MerR family regulatory protein AMJ96_PC00006 PF09278 MerR, DNA binding AMJ96_PC00007 PF00122 E1-E2 ATPase AMJ96_PC00007 PF00702 haloacid dehalogenase-like hydrolase AMJ96_PC00007 PF04945 YHS domain AMJ96_PC00008 PF00128 Alpha amylase, catalytic domain AMJ96_PC00009 PF05977 Transmembrane secretion effector AMJ96_PC00010 PF00905 Penicillin binding protein transpeptidase domain AMJ96_PC00010 PF00912 Transglycosylase AMJ96_PC00010 PF06832 AMJ96_PC00010 AMJ96_PC00011 PF00024 PAN domain AMJ96_PC00011 PF00207 Alpha-2-macroglobulin family AMJ96_PC00011 PF01835 MG2 domain AMJ96_PC00011 PF07703 Alpha-2-macroglobulin family N-terminal region AMJ96_PC00011 PF11974 Alpha-2-macroglobulin MG1 domain AMJ96_PC00012 PF01625 Peptide methionine sulfoxide reductase AMJ96_PC00013 PF03734 L,D-transpeptidase catalytic domain AMJ96_PC00014 PF00072 Response regulator receiver domain AMJ96_PC00015 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00015 PF14246 AefR-like transcriptional repressor, C-terminal region AMJ96_PC00016 PF07690 Major Facilitator Superfamily AMJ96_PC00017 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00018 PF00106 short chain dehydrogenase AMJ96_PC00019 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00019 PF13377 Periplasmic binding protein-like domain AMJ96_PC00020 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00020 PF13377 Periplasmic binding protein-like domain AMJ96_PC00022 PF00005 ABC transporter AMJ96_PC00022 PF00664 ABC transporter transmembrane region AMJ96_PC00023 PF00005 ABC transporter AMJ96_PC00023 PF00664 ABC transporter transmembrane region AMJ96_PC00024 PF03358 NADPH-dependent FMN reductase AMJ96_PC00025 PF13454 FAD-NAD(P)-binding AMJ96_PC00026 PF00072 Response regulator receiver domain AMJ96_PC00026 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PC00026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00026 PF13426 PAS domain AMJ96_PC00027 PF01757 AMJ96_PC00027 AMJ96_PC00028 PF02104 AMJ96_PC00028 AMJ96_PC00029 PF03626 AMJ96_PC00029 AMJ96_PC00030 PF00510 Cytochrome c oxidase subunit III AMJ96_PC00031 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PC00032 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_PC00032 PF06481 COX Aromatic Rich Motif AMJ96_PC00033 PF00083 Sugar (and other) transporter AMJ96_PC00035 PF00027 Cyclic nucleotide-binding domain AMJ96_PC00036 PF00005 ABC transporter AMJ96_PC00036 PF00664 ABC transporter transmembrane region AMJ96_PC00037 PF04101 Glycosyltransferase family 28 C-terminal domain AMJ96_PC00038 PF00534 Glycosyl transferases group 1 AMJ96_PC00039 PF04101 Glycosyltransferase family 28 C-terminal domain AMJ96_PC00040 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00040 PF12911 AMJ96_PC00040 AMJ96_PC00041 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00042 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00043 PF00005 ABC transporter AMJ96_PC00043 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00044 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJ96_PC00045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJ96_PC00045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJ96_PC00046 PF11294 AMJ96_PC00046 AMJ96_PC00047 PF12692 S-adenosyl-L-methionine methyltransferase AMJ96_PC00048 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PC00049 PF02082 Transcriptional regulator AMJ96_PC00050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00051 PF05656 AMJ96_PC00051 AMJ96_PC00052 PF05656 AMJ96_PC00052 AMJ96_PC00055 PF07726 ATPase family associated with various cellular activities (AAA) AMJ96_PC00056 PF01882 AMJ96_PC00056 AMJ96_PC00057 PF01944 AMJ96_PC00057 AMJ96_PC00058 PF06271 AMJ96_PC00058 AMJ96_PC00059 PF05050 Methyltransferase FkbM domain AMJ96_PC00060 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJ96_PC00060 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00061 PF00534 Glycosyl transferases group 1 AMJ96_PC00062 PF01522 Polysaccharide deacetylase AMJ96_PC00063 PF00561 alpha/beta hydrolase fold AMJ96_PC00064 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PC00065 PF12706 Beta-lactamase superfamily domain AMJ96_PC00066 PF00206 Lyase AMJ96_PC00067 PF00775 Dioxygenase AMJ96_PC00068 PF00775 Dioxygenase AMJ96_PC00068 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMJ96_PC00069 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PC00070 PF12146 Putative lysophospholipase AMJ96_PC00071 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00071 PF03466 LysR substrate binding domain AMJ96_PC00072 PF09722 AMJ96_PC00072 AMJ96_PC00073 PF08808 AMJ96_PC00073 AMJ96_PC00076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00076 PF03466 LysR substrate binding domain AMJ96_PC00077 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJ96_PC00078 PF07681 AMJ96_PC00078 AMJ96_PC00079 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PC00080 PF05988 AMJ96_PC00080 AMJ96_PC00081 PF00226 DnaJ domain AMJ96_PC00082 PF05962 HutD AMJ96_PC00083 PF01175 Urocanase AMJ96_PC00083 PF17391 AMJ96_PC00083 AMJ96_PC00083 PF17392 AMJ96_PC00083 AMJ96_PC00084 PF05013 N-formylglutamate amidohydrolase AMJ96_PC00086 PF00221 Aromatic amino acid lyase AMJ96_PC00087 PF01979 Amidohydrolase family AMJ96_PC00088 PF01979 Amidohydrolase family AMJ96_PC00089 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00089 PF07702 UTRA domain AMJ96_PC00090 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00090 PF07702 UTRA domain AMJ96_PC00091 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PC00092 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00093 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00094 PF00005 ABC transporter AMJ96_PC00095 PF00221 Aromatic amino acid lyase AMJ96_PC00097 PF01569 PAP2 superfamily AMJ96_PC00098 PF01266 FAD dependent oxidoreductase AMJ96_PC00098 PF01571 Aminomethyltransferase folate-binding domain AMJ96_PC00098 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_PC00098 PF16350 AMJ96_PC00098 AMJ96_PC00102 PF13847 Methyltransferase domain AMJ96_PC00103 PF02311 AraC-like ligand binding domain AMJ96_PC00103 PF12833 Helix-turn-helix domain AMJ96_PC00104 PF02056 Family 4 glycosyl hydrolase AMJ96_PC00104 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMJ96_PC00105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00106 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00107 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00107 PF12911 AMJ96_PC00107 AMJ96_PC00108 PF00005 ABC transporter AMJ96_PC00108 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00109 PF02056 Family 4 glycosyl hydrolase AMJ96_PC00109 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMJ96_PC00110 PF00891 O-methyltransferase AMJ96_PC00110 PF16864 AMJ96_PC00110 AMJ96_PC00111 PF03737 Demethylmenaquinone methyltransferase AMJ96_PC00112 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00112 PF13378 Enolase C-terminal domain-like AMJ96_PC00113 PF00005 ABC transporter AMJ96_PC00113 PF03459 TOBE domain AMJ96_PC00114 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00115 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00116 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00117 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00117 PF07729 FCD domain AMJ96_PC00118 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00118 PF13378 Enolase C-terminal domain-like AMJ96_PC00119 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00119 PF13378 Enolase C-terminal domain-like AMJ96_PC00120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00120 PF13378 Enolase C-terminal domain-like AMJ96_PC00122 PF00595 PDZ domain (Also known as DHR or GLGF) AMJ96_PC00122 PF03572 Peptidase family S41 AMJ96_PC00122 PF11818 AMJ96_PC00122 AMJ96_PC00123 PF01850 PIN domain AMJ96_PC00124 PF09957 AMJ96_PC00124 AMJ96_PC00126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00126 PF03466 LysR substrate binding domain AMJ96_PC00127 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00128 PF01380 SIS domain AMJ96_PC00128 PF01418 Helix-turn-helix domain, rpiR family AMJ96_PC00129 PF01177 Asp/Glu/Hydantoin racemase AMJ96_PC00130 PF09084 NMT1/THI5 like AMJ96_PC00131 PF00005 ABC transporter AMJ96_PC00132 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00133 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00134 PF13416 Bacterial extracellular solute-binding protein AMJ96_PC00135 PF00557 Metallopeptidase family M24 AMJ96_PC00136 PF00656 Caspase domain AMJ96_PC00136 PF08238 Sel1 repeat AMJ96_PC00141 PF00691 OmpA family AMJ96_PC00141 PF14326 AMJ96_PC00141 AMJ96_PC00142 PF00656 Caspase domain AMJ96_PC00143 PF00089 Trypsin AMJ96_PC00143 PF00656 Caspase domain AMJ96_PC00143 PF14326 AMJ96_PC00143 AMJ96_PC00144 PF00079 Serpin (serine protease inhibitor) AMJ96_PC00145 PF00069 Protein kinase domain AMJ96_PC00146 PF01936 NYN domain AMJ96_PC00146 PF12872 OST-HTH/LOTUS domain AMJ96_PC00147 PF06169 Protein of unknown function (DUF982) AMJ96_PC00148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00148 PF03466 LysR substrate binding domain AMJ96_PC00149 PF12146 Putative lysophospholipase AMJ96_PC00152 PF12840 Helix-turn-helix domain AMJ96_PC00153 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_PC00155 PF01636 Phosphotransferase enzyme family AMJ96_PC00156 PF08681 Protein of unknown function (DUF1778) AMJ96_PC00157 PF13508 Acetyltransferase (GNAT) domain AMJ96_PC00159 PF05368 NmrA-like family AMJ96_PC00160 PF05368 NmrA-like family AMJ96_PC00161 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00161 PF03466 LysR substrate binding domain AMJ96_PC00163 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00164 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00166 PF00498 FHA domain AMJ96_PC00167 PF00482 Type II secretion system (T2SS), protein F AMJ96_PC00168 PF00482 Type II secretion system (T2SS), protein F AMJ96_PC00169 PF00437 Type II/IV secretion system protein AMJ96_PC00170 PF16976 AMJ96_PC00170 AMJ96_PC00173 PF13400 AMJ96_PC00173 AMJ96_PC00174 PF07811 AMJ96_PC00174 AMJ96_PC00175 PF01478 Type IV leader peptidase family AMJ96_PC00177 PF00437 Type II/IV secretion system protein AMJ96_PC00181 PF07812 AMJ96_PC00181 AMJ96_PC00182 PF02624 YcaO-like family AMJ96_PC00183 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00183 PF13191 AAA ATPase domain AMJ96_PC00184 PF00501 AMP-binding enzyme AMJ96_PC00185 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMJ96_PC00186 PF12840 Helix-turn-helix domain AMJ96_PC00187 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00188 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00189 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00190 PF00296 Luciferase-like monooxygenase AMJ96_PC00191 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00191 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00192 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PC00192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00192 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00193 PF00296 Luciferase-like monooxygenase AMJ96_PC00194 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJ96_PC00196 PF12796 Ankyrin repeats (3 copies) AMJ96_PC00197 PF00005 ABC transporter AMJ96_PC00198 PF00005 ABC transporter AMJ96_PC00198 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00199 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00200 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00201 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00202 PF06964 Alpha-L-arabinofuranosidase C-terminus AMJ96_PC00203 PF12840 Helix-turn-helix domain AMJ96_PC00204 PF01757 AMJ96_PC00204 AMJ96_PC00205 PF04230 AMJ96_PC00205 AMJ96_PC00206 PF13440 AMJ96_PC00206 AMJ96_PC00206 PF14667 Polysaccharide biosynthesis C-terminal domain AMJ96_PC00207 PF01757 AMJ96_PC00207 AMJ96_PC00208 PF01614 Bacterial transcriptional regulator AMJ96_PC00208 PF09339 IclR helix-turn-helix domain AMJ96_PC00209 PF01144 Coenzyme A transferase AMJ96_PC00210 PF01144 Coenzyme A transferase AMJ96_PC00211 PF00108 Thiolase, N-terminal domain AMJ96_PC00211 PF02803 Thiolase, C-terminal domain AMJ96_PC00212 PF00583 Acetyltransferase (GNAT) family AMJ96_PC00213 PF07690 Major Facilitator Superfamily AMJ96_PC00214 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00215 PF00128 Alpha amylase, catalytic domain AMJ96_PC00215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_PC00216 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AMJ96_PC00217 PF14497 Glutathione S-transferase, C-terminal domain AMJ96_PC00218 PF11373 AMJ96_PC00218 AMJ96_PC00220 PF00072 Response regulator receiver domain AMJ96_PC00220 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PC00220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00220 PF08448 PAS fold AMJ96_PC00220 PF13185 GAF domain AMJ96_PC00222 PF01925 AMJ96_PC00222 AMJ96_PC00223 PF00753 Metallo-beta-lactamase superfamily AMJ96_PC00224 PF00266 Aminotransferase class-V AMJ96_PC00225 PF01037 AsnC family AMJ96_PC00225 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PC00226 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PC00228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00228 PF03466 LysR substrate binding domain AMJ96_PC00229 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00230 PF00005 ABC transporter AMJ96_PC00231 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PC00232 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00233 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00234 PF07690 Major Facilitator Superfamily AMJ96_PC00236 PF11154 AMJ96_PC00236 AMJ96_PC00237 PF03167 Uracil DNA glycosylase superfamily AMJ96_PC00238 PF13091 PLD-like domain AMJ96_PC00238 PF13396 AMJ96_PC00238 AMJ96_PC00239 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_PC00241 PF13202 EF hand AMJ96_PC00243 PF04214 AMJ96_PC00243 AMJ96_PC00244 PF11604 Copper binding periplasmic protein CusF AMJ96_PC00245 PF00127 Copper binding proteins, plastocyanin/azurin family AMJ96_PC00246 PF07731 Multicopper oxidase AMJ96_PC00246 PF07732 Multicopper oxidase AMJ96_PC00247 PF02321 Outer membrane efflux protein AMJ96_PC00250 PF01292 Prokaryotic cytochrome b561 AMJ96_PC00251 PF01322 Cytochrome C' AMJ96_PC00253 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00253 PF07729 FCD domain AMJ96_PC00254 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PC00255 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00256 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00257 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00258 PF00005 ABC transporter AMJ96_PC00258 PF08402 TOBE domain AMJ96_PC00259 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_PC00260 PF02735 Ku70/Ku80 beta-barrel domain AMJ96_PC00261 PF01068 ATP dependent DNA ligase domain AMJ96_PC00261 PF04679 ATP dependent DNA ligase C terminal region AMJ96_PC00262 PF01068 ATP dependent DNA ligase domain AMJ96_PC00262 PF04679 ATP dependent DNA ligase C terminal region AMJ96_PC00262 PF13298 DNA polymerase Ligase (LigD) AMJ96_PC00263 PF06441 Epoxide hydrolase N terminus AMJ96_PC00264 PF01546 Peptidase family M20/M25/M40 AMJ96_PC00264 PF07687 Peptidase dimerisation domain AMJ96_PC00265 PF07486 Cell Wall Hydrolase AMJ96_PC00266 PF00005 ABC transporter AMJ96_PC00266 PF12857 AMJ96_PC00266 AMJ96_PC00267 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00269 PF13531 Bacterial extracellular solute-binding protein AMJ96_PC00270 PF02530 AMJ96_PC00270 AMJ96_PC00271 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_PC00272 PF00072 Response regulator receiver domain AMJ96_PC00272 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PC00273 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PC00273 PF00582 Universal stress protein family AMJ96_PC00273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PC00273 PF02702 Osmosensitive K+ channel His kinase sensor domain AMJ96_PC00273 PF13492 GAF domain AMJ96_PC00273 PF13493 Domain of unknown function (DUF4118) AMJ96_PC00274 PF02669 AMJ96_PC00274 AMJ96_PC00275 PF00122 E1-E2 ATPase AMJ96_PC00275 PF00702 haloacid dehalogenase-like hydrolase AMJ96_PC00276 PF03814 AMJ96_PC00276 AMJ96_PC00277 PF09604 AMJ96_PC00277 AMJ96_PC00278 PF04234 CopC domain AMJ96_PC00279 PF00107 Zinc-binding dehydrogenase AMJ96_PC00279 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PC00280 PF09335 AMJ96_PC00280 AMJ96_PC00281 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJ96_PC00281 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00283 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00283 PF02770 Acyl-CoA dehydrogenase, middle domain AMJ96_PC00283 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJ96_PC00284 PF07883 Cupin domain AMJ96_PC00285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00285 PF03466 LysR substrate binding domain AMJ96_PC00287 PF13458 Periplasmic binding protein AMJ96_PC00288 PF00005 ABC transporter AMJ96_PC00288 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJ96_PC00289 PF00005 ABC transporter AMJ96_PC00290 PF02653 AMJ96_PC00290 AMJ96_PC00291 PF02653 AMJ96_PC00291 AMJ96_PC00292 PF00732 GMC oxidoreductase AMJ96_PC00292 PF05199 GMC oxidoreductase AMJ96_PC00293 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PC00293 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PC00294 PF00005 ABC transporter AMJ96_PC00295 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_PC00296 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_PC00297 PF05336 Domain of unknown function (DUF718) AMJ96_PC00298 PF02653 AMJ96_PC00298 AMJ96_PC00299 PF02653 AMJ96_PC00299 AMJ96_PC00300 PF00005 ABC transporter AMJ96_PC00301 PF13407 Periplasmic binding protein domain AMJ96_PC00302 PF00455 AMJ96_PC00302 AMJ96_PC00302 PF08220 DeoR-like helix-turn-helix domain AMJ96_PC00303 PF00596 Class II Aldolase and Adducin N-terminal domain AMJ96_PC00303 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00304 PF01261 Xylose isomerase-like TIM barrel AMJ96_PC00305 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PC00306 PF04542 Sigma-70 region 2 AMJ96_PC00306 PF08281 Sigma-70, region 4 AMJ96_PC00307 PF01979 Amidohydrolase family AMJ96_PC00309 PF01614 Bacterial transcriptional regulator AMJ96_PC00309 PF09339 IclR helix-turn-helix domain AMJ96_PC00310 PF01850 PIN domain AMJ96_PC00311 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PC00312 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00313 PF01968 Hydantoinase/oxoprolinase AMJ96_PC00313 PF02538 AMJ96_PC00313 AMJ96_PC00313 PF05378 AMJ96_PC00313 AMJ96_PC00314 PF13463 Winged helix DNA-binding domain AMJ96_PC00316 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00318 PF01478 Type IV leader peptidase family AMJ96_PC00320 PF08666 SAF domain AMJ96_PC00320 PF16976 AMJ96_PC00320 AMJ96_PC00321 PF00263 AMJ96_PC00321 AMJ96_PC00321 PF13629 AMJ96_PC00321 AMJ96_PC00323 PF13400 AMJ96_PC00323 AMJ96_PC00324 PF07811 AMJ96_PC00324 AMJ96_PC00325 PF07811 AMJ96_PC00325 AMJ96_PC00327 PF03734 L,D-transpeptidase catalytic domain AMJ96_PC00328 PF00437 Type II/IV secretion system protein AMJ96_PC00329 PF00482 Type II secretion system (T2SS), protein F AMJ96_PC00330 PF00482 Type II secretion system (T2SS), protein F AMJ96_PC00333 PF07719 Tetratricopeptide repeat AMJ96_PC00333 PF13432 Tetratricopeptide repeat AMJ96_PC00335 PF08837 Protein of unknown function (DUF1810) AMJ96_PC00337 PF01425 Amidase AMJ96_PC00338 PF01261 Xylose isomerase-like TIM barrel AMJ96_PC00339 PF00884 Sulfatase AMJ96_PC00339 PF12411 AMJ96_PC00339 AMJ96_PC00340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PC00340 PF03466 LysR substrate binding domain AMJ96_PC00342 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJ96_PC00344 PF00005 ABC transporter AMJ96_PC00344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00345 PF00005 ABC transporter AMJ96_PC00346 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00346 PF12911 AMJ96_PC00346 AMJ96_PC00347 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00348 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00349 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PC00350 PF00583 Acetyltransferase (GNAT) family AMJ96_PC00351 PF08543 Phosphomethylpyrimidine kinase AMJ96_PC00352 PF02581 Thiamine monophosphate synthase/TENI AMJ96_PC00353 PF02110 Hydroxyethylthiazole kinase family AMJ96_PC00354 PF07081 Protein of unknown function (DUF1349) AMJ96_PC00355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PC00356 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00357 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00357 PF12911 AMJ96_PC00357 AMJ96_PC00358 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMJ96_PC00359 PF03841 L-seryl-tRNA selenium transferase AMJ96_PC00360 PF00005 ABC transporter AMJ96_PC00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PC00361 PF07883 Cupin domain AMJ96_PC00362 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00362 PF07729 FCD domain AMJ96_PC00363 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00363 PF07729 FCD domain AMJ96_PC00364 PF00106 short chain dehydrogenase AMJ96_PC00365 PF12833 Helix-turn-helix domain AMJ96_PC00365 PF12852 Cupin AMJ96_PC00366 PF00324 Amino acid permease AMJ96_PC00367 PF06089 AMJ96_PC00367 AMJ96_PC00368 PF00206 Lyase AMJ96_PC00368 PF10415 Fumarase C C-terminus AMJ96_PC00369 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMJ96_PC00370 PF02627 Carboxymuconolactone decarboxylase family AMJ96_PC00371 PF00251 Glycosyl hydrolases family 32 N-terminal domain AMJ96_PC00372 PF05048 Periplasmic copper-binding protein (NosD) AMJ96_PC00373 PF00005 ABC transporter AMJ96_PC00374 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00375 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00376 PF01547 Bacterial extracellular solute-binding protein AMJ96_PC00377 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00377 PF13377 Periplasmic binding protein-like domain AMJ96_PC00378 PF12833 Helix-turn-helix domain AMJ96_PC00378 PF14525 AMJ96_PC00378 AMJ96_PC00380 PF13437 HlyD family secretion protein AMJ96_PC00381 PF00535 Glycosyl transferase family 2 AMJ96_PC00383 PF04657 AMJ96_PC00383 AMJ96_PC00384 PF04657 AMJ96_PC00384 AMJ96_PC00385 PF01738 Dienelactone hydrolase family AMJ96_PC00386 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PC00386 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PC00387 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00388 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PC00389 PF13416 Bacterial extracellular solute-binding protein AMJ96_PC00390 PF00005 ABC transporter AMJ96_PC00390 PF08402 TOBE domain AMJ96_PC00395 PF01168 Alanine racemase, N-terminal domain AMJ96_PC00395 PF14031 Putative serine dehydratase domain AMJ96_PC00396 PF07171 MlrC C-terminus AMJ96_PC00396 PF07364 Protein of unknown function (DUF1485) AMJ96_PC00398 PF01042 Endoribonuclease L-PSP AMJ96_PC00399 PF01380 SIS domain AMJ96_PC00399 PF01418 Helix-turn-helix domain, rpiR family AMJ96_PC00400 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00401 PF07690 Major Facilitator Superfamily AMJ96_PC00402 PF00480 ROK family AMJ96_PC00402 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PC00404 PF00892 EamA-like transporter family AMJ96_PC00405 PF12833 Helix-turn-helix domain AMJ96_PC00406 PF00728 Glycosyl hydrolase family 20, catalytic domain AMJ96_PC00406 PF02838 Glycosyl hydrolase family 20, domain 2 AMJ96_PC00407 PF00669 Bacterial flagellin N-terminal helical region AMJ96_PC00407 PF00700 Bacterial flagellin C-terminal helical region AMJ96_PC00408 PF07690 Major Facilitator Superfamily AMJ96_PC00413 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PC00413 PF07729 FCD domain AMJ96_PC00414 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00415 PF04962 KduI/IolB family AMJ96_PC00417 PF06568 AMJ96_PC00417 AMJ96_PC00418 PF00929 Exonuclease AMJ96_PC00419 PF01593 Flavin containing amine oxidoreductase AMJ96_PC00420 PF00248 Aldo/keto reductase family AMJ96_PC00421 PF03776 Septum formation topological specificity factor MinE AMJ96_PC00422 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_PC00423 PF03775 Septum formation inhibitor MinC, C-terminal domain AMJ96_PC00424 PF00551 Formyl transferase AMJ96_PC00425 PF00120 Glutamine synthetase, catalytic domain AMJ96_PC00426 PF01645 Conserved region in glutamate synthase AMJ96_PC00427 PF01493 GXGXG motif AMJ96_PC00428 PF13522 Glutamine amidotransferase domain AMJ96_PC00429 PF01381 Helix-turn-helix AMJ96_PC00429 PF07883 Cupin domain AMJ96_PC00430 PF01965 DJ-1/PfpI family AMJ96_PC00430 PF12833 Helix-turn-helix domain AMJ96_PC00431 PF01266 FAD dependent oxidoreductase AMJ96_PC00432 PF04267 Sarcosine oxidase, delta subunit family AMJ96_PC00433 PF01571 Aminomethyltransferase folate-binding domain AMJ96_PC00433 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00433 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJ96_PC00433 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_PC00434 PF04268 Sarcosine oxidase, gamma subunit family AMJ96_PC00435 PF08241 Methyltransferase domain AMJ96_PC00436 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PC00436 PF14246 AefR-like transcriptional repressor, C-terminal region AMJ96_PC00437 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00438 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PC00438 PF13378 Enolase C-terminal domain-like AMJ96_PC00439 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PC00440 PF01614 Bacterial transcriptional regulator AMJ96_PC00440 PF09339 IclR helix-turn-helix domain AMJ96_PC00441 PF04909 Amidohydrolase AMJ96_PC00442 PF01381 Helix-turn-helix AMJ96_PC00444 PF07812 AMJ96_PC00444 AMJ96_PC00445 PF02624 YcaO-like family AMJ96_PC00447 PF03704 Bacterial transcriptional activator domain AMJ96_PC00447 PF14559 Tetratricopeptide repeat AMJ96_PC00448 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMJ96_PC00448 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMJ96_PC00449 PF00890 FAD binding domain AMJ96_PC00450 PF02445 Quinolinate synthetase A protein AMJ96_PC00452 PF02548 Ketopantoate hydroxymethyltransferase AMJ96_PC00453 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PC00453 PF14759 Reductase C-terminal AMJ96_PC00454 PF00355 Rieske [2Fe-2S] domain AMJ96_PC00455 PF00487 AMJ96_PC00455 AMJ96_PC00456 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PC00456 PF13407 Periplasmic binding protein domain AMJ96_PC00457 PF01261 Xylose isomerase-like TIM barrel AMJ96_PC00458 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00459 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00460 PF02571 AMJ96_PC00460 AMJ96_PC00461 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00462 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00463 PF02570 Precorrin-8X methylmutase AMJ96_PC00464 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJ96_PC00465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJ96_PC00466 PF13614 AAA domain AMJ96_PC00467 PF02195 ParB-like nuclease domain AMJ96_PC00467 PF07506 AMJ96_PC00467 AMJ96_PC00469 PF03428 AMJ96_PC00469 AMJ96_PC00469 PF11800 AMJ96_PC00469 AMJ96_PD00001 PF04352 ProQ/FINO family AMJ96_PD00002 PF02569 Pantoate-beta-alanine ligase AMJ96_PD00003 PF02548 Ketopantoate hydroxymethyltransferase AMJ96_PD00004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00004 PF03466 LysR substrate binding domain AMJ96_PD00005 PF00141 Peroxidase AMJ96_PD00006 PF01548 AMJ96_PD00006 AMJ96_PD00006 PF02371 AMJ96_PD00006 AMJ96_PD00007 PF00106 short chain dehydrogenase AMJ96_PD00008 PF01850 PIN domain AMJ96_PD00009 PF04014 Antidote-toxin recognition MazE AMJ96_PD00010 PF11736 Protein of unknown function (DUF3299) AMJ96_PD00011 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_PD00012 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PD00013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00013 PF03466 LysR substrate binding domain AMJ96_PD00014 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00014 PF13602 Zinc-binding dehydrogenase AMJ96_PD00015 PF13279 Thioesterase-like superfamily AMJ96_PD00016 PF00501 AMP-binding enzyme AMJ96_PD00016 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PD00017 PF00108 Thiolase, N-terminal domain AMJ96_PD00017 PF02803 Thiolase, C-terminal domain AMJ96_PD00018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00018 PF03466 LysR substrate binding domain AMJ96_PD00019 PF07883 Cupin domain AMJ96_PD00020 PF13460 NADH(P)-binding AMJ96_PD00021 PF07883 Cupin domain AMJ96_PD00022 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PD00023 PF03631 AMJ96_PD00023 AMJ96_PD00026 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PD00029 PF01145 SPFH domain / Band 7 family AMJ96_PD00030 PF00293 NUDIX domain AMJ96_PD00032 PF00582 Universal stress protein family AMJ96_PD00033 PF02734 DAK2 domain AMJ96_PD00034 PF02733 Dak1 domain AMJ96_PD00036 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00036 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00037 PF02653 AMJ96_PD00037 AMJ96_PD00038 PF00005 ABC transporter AMJ96_PD00039 PF10054 Predicted periplasmic lipoprotein (DUF2291) AMJ96_PD00040 PF13407 Periplasmic binding protein domain AMJ96_PD00041 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00041 PF16896 AMJ96_PD00041 AMJ96_PD00042 PF02502 Ribose/Galactose Isomerase AMJ96_PD00043 PF00121 Triosephosphate isomerase AMJ96_PD00044 PF07005 Protein of unknown function, DUF1537 AMJ96_PD00044 PF17042 AMJ96_PD00044 AMJ96_PD00045 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AMJ96_PD00045 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AMJ96_PD00046 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00046 PF07729 FCD domain AMJ96_PD00048 PF01548 AMJ96_PD00048 AMJ96_PD00048 PF02371 AMJ96_PD00048 AMJ96_PD00049 PF00005 ABC transporter AMJ96_PD00049 PF00664 ABC transporter transmembrane region AMJ96_PD00050 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00050 PF13377 Periplasmic binding protein-like domain AMJ96_PD00051 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00052 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00053 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00054 PF00251 Glycosyl hydrolases family 32 N-terminal domain AMJ96_PD00055 PF05974 Domain of unknown function (DUF892) AMJ96_PD00056 PF04542 Sigma-70 region 2 AMJ96_PD00056 PF08281 Sigma-70, region 4 AMJ96_PD00057 PF00067 Cytochrome P450 AMJ96_PD00060 PF06532 AMJ96_PD00060 AMJ96_PD00061 PF04542 Sigma-70 region 2 AMJ96_PD00061 PF08281 Sigma-70, region 4 AMJ96_PD00062 PF13545 Crp-like helix-turn-helix domain AMJ96_PD00070 PF00989 PAS fold AMJ96_PD00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00070 PF07568 AMJ96_PD00070 AMJ96_PD00070 PF13426 PAS domain AMJ96_PD00071 PF13545 Crp-like helix-turn-helix domain AMJ96_PD00072 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00072 PF07729 FCD domain AMJ96_PD00073 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJ96_PD00074 PF04290 AMJ96_PD00074 AMJ96_PD00075 PF06808 AMJ96_PD00075 AMJ96_PD00076 PF00107 Zinc-binding dehydrogenase AMJ96_PD00076 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00077 PF07012 AMJ96_PD00077 AMJ96_PD00079 PF07012 AMJ96_PD00079 AMJ96_PD00080 PF12697 Alpha/beta hydrolase family AMJ96_PD00082 PF00561 alpha/beta hydrolase fold AMJ96_PD00083 PF04752 AMJ96_PD00083 AMJ96_PD00084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00084 PF03466 LysR substrate binding domain AMJ96_PD00085 PF01266 FAD dependent oxidoreductase AMJ96_PD00087 PF00990 GGDEF domain AMJ96_PD00088 PF02743 Cache domain AMJ96_PD00088 PF07536 AMJ96_PD00088 AMJ96_PD00089 PF00072 Response regulator receiver domain AMJ96_PD00092 PF14231 GXWXG protein AMJ96_PD00092 PF14232 Domain of unknown function (DUF4334) AMJ96_PD00093 PF12850 Calcineurin-like phosphoesterase superfamily domain AMJ96_PD00094 PF06724 AMJ96_PD00094 AMJ96_PD00095 PF00293 NUDIX domain AMJ96_PD00096 PF00582 Universal stress protein family AMJ96_PD00096 PF00999 Sodium/hydrogen exchanger family AMJ96_PD00097 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00097 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_PD00098 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00099 PF00106 short chain dehydrogenase AMJ96_PD00100 PF00005 ABC transporter AMJ96_PD00100 PF08402 TOBE domain AMJ96_PD00101 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00102 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00103 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00104 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00105 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00105 PF07729 FCD domain AMJ96_PD00106 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00107 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00108 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00109 PF00294 pfkB family carbohydrate kinase AMJ96_PD00110 PF03693 Uncharacterised protein family (UPF0156) AMJ96_PD00111 PF05016 Plasmid stabilisation system protein AMJ96_PD00112 PF13551 Winged helix-turn helix AMJ96_PD00113 PF00665 Integrase core domain AMJ96_PD00113 PF13936 Helix-turn-helix domain AMJ96_PD00115 PF01548 AMJ96_PD00115 AMJ96_PD00115 PF02371 AMJ96_PD00115 AMJ96_PD00116 PF09223 YodA lipocalin-like domain AMJ96_PD00117 PF03428 AMJ96_PD00117 AMJ96_PD00117 PF11800 AMJ96_PD00117 AMJ96_PD00118 PF02397 AMJ96_PD00118 AMJ96_PD00119 PF02719 Polysaccharide biosynthesis protein AMJ96_PD00119 PF13727 CoA-binding domain AMJ96_PD00120 PF04932 AMJ96_PD00120 AMJ96_PD00122 PF11154 AMJ96_PD00122 AMJ96_PD00123 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00123 PF07729 FCD domain AMJ96_PD00124 PF03786 D-mannonate dehydratase (UxuA) AMJ96_PD00125 PF01263 Aldose 1-epimerase AMJ96_PD00127 PF00005 ABC transporter AMJ96_PD00127 PF12848 ABC transporter AMJ96_PD00129 PF07043 AMJ96_PD00129 AMJ96_PD00130 PF06186 AMJ96_PD00130 AMJ96_PD00131 PF00583 Acetyltransferase (GNAT) family AMJ96_PD00132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00132 PF03466 LysR substrate binding domain AMJ96_PD00133 PF00892 EamA-like transporter family AMJ96_PD00134 PF00455 AMJ96_PD00134 AMJ96_PD00134 PF08220 DeoR-like helix-turn-helix domain AMJ96_PD00135 PF01266 FAD dependent oxidoreductase AMJ96_PD00135 PF16901 AMJ96_PD00135 AMJ96_PD00136 PF00005 ABC transporter AMJ96_PD00137 PF00005 ABC transporter AMJ96_PD00137 PF08402 TOBE domain AMJ96_PD00138 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00139 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00140 PF09928 AMJ96_PD00140 AMJ96_PD00142 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJ96_PD00142 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJ96_PD00143 PF01411 tRNA synthetases class II (A) AMJ96_PD00144 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMJ96_PD00145 PF00465 Iron-containing alcohol dehydrogenase AMJ96_PD00146 PF13088 BNR repeat-like domain AMJ96_PD00147 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00148 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00149 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00150 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00150 PF12911 AMJ96_PD00150 AMJ96_PD00151 PF00005 ABC transporter AMJ96_PD00151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00152 PF00005 ABC transporter AMJ96_PD00152 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00153 PF07005 Protein of unknown function, DUF1537 AMJ96_PD00153 PF17042 AMJ96_PD00153 AMJ96_PD00154 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00154 PF07729 FCD domain AMJ96_PD00155 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00156 PF11154 AMJ96_PD00156 AMJ96_PD00157 PF13628 AMJ96_PD00157 AMJ96_PD00158 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMJ96_PD00158 PF05139 Erythromycin esterase AMJ96_PD00159 PF13520 Amino acid permease AMJ96_PD00162 PF00106 short chain dehydrogenase AMJ96_PD00163 PF00107 Zinc-binding dehydrogenase AMJ96_PD00163 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00163 PF13823 Alcohol dehydrogenase GroES-associated AMJ96_PD00165 PF00149 Calcineurin-like phosphoesterase AMJ96_PD00166 PF14907 Uncharacterised nucleotidyltransferase AMJ96_PD00170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00171 PF00107 Zinc-binding dehydrogenase AMJ96_PD00171 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00172 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00173 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00174 PF00534 Glycosyl transferases group 1 AMJ96_PD00174 PF13439 Glycosyltransferase Family 4 AMJ96_PD00175 PF13524 Glycosyl transferases group 1 AMJ96_PD00176 PF13524 Glycosyl transferases group 1 AMJ96_PD00177 PF13524 Glycosyl transferases group 1 AMJ96_PD00178 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00180 PF00034 Cytochrome c AMJ96_PD00181 PF00072 Response regulator receiver domain AMJ96_PD00181 PF13545 Crp-like helix-turn-helix domain AMJ96_PD00182 PF00072 Response regulator receiver domain AMJ96_PD00183 PF01339 CheB methylesterase AMJ96_PD00184 PF01339 CheB methylesterase AMJ96_PD00184 PF01739 CheR methyltransferase, SAM binding domain AMJ96_PD00184 PF03705 CheR methyltransferase, all-alpha domain AMJ96_PD00184 PF07536 AMJ96_PD00184 AMJ96_PD00184 PF08447 PAS fold AMJ96_PD00184 PF13426 PAS domain AMJ96_PD00184 PF13596 PAS domain AMJ96_PD00186 PF00034 Cytochrome c AMJ96_PD00187 PF09678 AMJ96_PD00187 AMJ96_PD00188 PF00510 Cytochrome c oxidase subunit III AMJ96_PD00189 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJ96_PD00190 PF00034 Cytochrome c AMJ96_PD00190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJ96_PD00191 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJ96_PD00192 PF00384 Molybdopterin oxidoreductase AMJ96_PD00192 PF01568 Molydopterin dinucleotide binding domain AMJ96_PD00195 PF01565 FAD binding domain AMJ96_PD00195 PF02913 FAD linked oxidases, C-terminal domain AMJ96_PD00195 PF13183 4Fe-4S dicluster domain AMJ96_PD00196 PF02581 Thiamine monophosphate synthase/TENI AMJ96_PD00197 PF05690 Thiazole biosynthesis protein ThiG AMJ96_PD00198 PF02597 ThiS family AMJ96_PD00199 PF01266 FAD dependent oxidoreductase AMJ96_PD00200 PF01964 ThiC family AMJ96_PD00200 PF13667 ThiC-associated domain AMJ96_PD00202 PF01757 AMJ96_PD00202 AMJ96_PD00203 PF00149 Calcineurin-like phosphoesterase AMJ96_PD00204 PF13514 AAA domain AMJ96_PD00205 PF01850 PIN domain AMJ96_PD00206 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PD00207 PF03069 Acetamidase/Formamidase family AMJ96_PD00208 PF02798 Glutathione S-transferase, N-terminal domain AMJ96_PD00208 PF13410 Glutathione S-transferase, C-terminal domain AMJ96_PD00209 PF09370 TIM-barrel signal transduction protein AMJ96_PD00210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00210 PF09130 Domain of unknown function (DUF1932) AMJ96_PD00211 PF00582 Universal stress protein family AMJ96_PD00212 PF00226 DnaJ domain AMJ96_PD00212 PF01556 DnaJ C terminal domain AMJ96_PD00213 PF13591 MerR HTH family regulatory protein AMJ96_PD00214 PF01148 Cytidylyltransferase family AMJ96_PD00215 PF01553 Acyltransferase AMJ96_PD00217 PF07969 Amidohydrolase family AMJ96_PD00218 PF13649 Methyltransferase domain AMJ96_PD00219 PF01625 Peptide methionine sulfoxide reductase AMJ96_PD00220 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00221 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00222 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00223 PF00005 ABC transporter AMJ96_PD00223 PF08402 TOBE domain AMJ96_PD00224 PF00459 Inositol monophosphatase family AMJ96_PD00225 PF00005 ABC transporter AMJ96_PD00225 PF08402 TOBE domain AMJ96_PD00226 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00227 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00228 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00229 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00231 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00231 PF13377 Periplasmic binding protein-like domain AMJ96_PD00233 PF00459 Inositol monophosphatase family AMJ96_PD00234 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00234 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMJ96_PD00235 PF03009 Glycerophosphoryl diester phosphodiesterase family AMJ96_PD00236 PF00005 ABC transporter AMJ96_PD00236 PF08402 TOBE domain AMJ96_PD00237 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00238 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00239 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00240 PF04073 Aminoacyl-tRNA editing domain AMJ96_PD00241 PF04280 Tim44-like domain AMJ96_PD00242 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00243 PF04955 AMJ96_PD00243 AMJ96_PD00244 PF12802 MarR family AMJ96_PD00245 PF00005 ABC transporter AMJ96_PD00245 PF00664 ABC transporter transmembrane region AMJ96_PD00246 PF00005 ABC transporter AMJ96_PD00247 PF01654 AMJ96_PD00247 AMJ96_PD00248 PF02322 AMJ96_PD00248 AMJ96_PD00249 PF08173 AMJ96_PD00249 AMJ96_PD00250 PF00248 Aldo/keto reductase family AMJ96_PD00250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00251 PF00005 ABC transporter AMJ96_PD00251 PF08402 TOBE domain AMJ96_PD00252 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00253 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00254 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00255 PF07883 Cupin domain AMJ96_PD00255 PF12833 Helix-turn-helix domain AMJ96_PD00256 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJ96_PD00257 PF00583 Acetyltransferase (GNAT) family AMJ96_PD00258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00259 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00260 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJ96_PD00261 PF01642 Methylmalonyl-CoA mutase AMJ96_PD00261 PF02310 B12 binding domain AMJ96_PD00262 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00263 PF00005 ABC transporter AMJ96_PD00263 PF09383 NIL domain AMJ96_PD00264 PF03180 NLPA lipoprotein AMJ96_PD00265 PF07690 Major Facilitator Superfamily AMJ96_PD00266 PF01381 Helix-turn-helix AMJ96_PD00267 PF00005 ABC transporter AMJ96_PD00268 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00269 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00270 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00271 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00271 PF07729 FCD domain AMJ96_PD00272 PF00005 ABC transporter AMJ96_PD00273 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00274 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00275 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00276 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00277 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00277 PF00672 HAMP domain AMJ96_PD00278 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMJ96_PD00279 PF00557 Metallopeptidase family M24 AMJ96_PD00279 PF01321 Creatinase/Prolidase N-terminal domain AMJ96_PD00280 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_PD00281 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_PD00282 PF01177 Asp/Glu/Hydantoin racemase AMJ96_PD00283 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00284 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00285 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00286 PF00005 ABC transporter AMJ96_PD00287 PF00155 Aminotransferase class I and II AMJ96_PD00287 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00288 PF01037 AsnC family AMJ96_PD00288 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PD00289 PF00171 Aldehyde dehydrogenase family AMJ96_PD00290 PF00202 Aminotransferase class-III AMJ96_PD00291 PF00107 Zinc-binding dehydrogenase AMJ96_PD00291 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00292 PF13430 AMJ96_PD00292 AMJ96_PD00293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00293 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00294 PF06283 Trehalose utilisation AMJ96_PD00295 PF00005 ABC transporter AMJ96_PD00295 PF08402 TOBE domain AMJ96_PD00296 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00297 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00298 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00299 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00299 PF13377 Periplasmic binding protein-like domain AMJ96_PD00300 PF03428 AMJ96_PD00300 AMJ96_PD00300 PF11800 AMJ96_PD00300 AMJ96_PD00301 PF02195 ParB-like nuclease domain AMJ96_PD00301 PF07506 AMJ96_PD00301 AMJ96_PD00302 PF13614 AAA domain AMJ96_PD00304 PF02653 AMJ96_PD00304 AMJ96_PD00305 PF02653 AMJ96_PD00305 AMJ96_PD00306 PF00005 ABC transporter AMJ96_PD00307 PF13407 Periplasmic binding protein domain AMJ96_PD00308 PF02567 Phenazine biosynthesis-like protein AMJ96_PD00309 PF02653 AMJ96_PD00309 AMJ96_PD00310 PF00005 ABC transporter AMJ96_PD00311 PF13407 Periplasmic binding protein domain AMJ96_PD00312 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00312 PF13377 Periplasmic binding protein-like domain AMJ96_PD00313 PF13460 NADH(P)-binding AMJ96_PD00314 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00314 PF05231 AMJ96_PD00314 AMJ96_PD00314 PF08447 PAS fold AMJ96_PD00315 PF00072 Response regulator receiver domain AMJ96_PD00315 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00316 PF00072 Response regulator receiver domain AMJ96_PD00317 PF00072 Response regulator receiver domain AMJ96_PD00317 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00318 PF01022 Bacterial regulatory protein, arsR family AMJ96_PD00319 PF00881 Nitroreductase family AMJ96_PD00320 PF03358 NADPH-dependent FMN reductase AMJ96_PD00321 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00321 PF13378 Enolase C-terminal domain-like AMJ96_PD00322 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00322 PF13378 Enolase C-terminal domain-like AMJ96_PD00323 PF00005 ABC transporter AMJ96_PD00323 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00324 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00324 PF12911 AMJ96_PD00324 AMJ96_PD00325 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00326 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00327 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00327 PF07729 FCD domain AMJ96_PD00328 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00329 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_PD00330 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00331 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00332 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00333 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00333 PF12911 AMJ96_PD00333 AMJ96_PD00334 PF00005 ABC transporter AMJ96_PD00335 PF00005 ABC transporter AMJ96_PD00337 PF00892 EamA-like transporter family AMJ96_PD00338 PF05559 AMJ96_PD00338 AMJ96_PD00339 PF00614 Phospholipase D Active site motif AMJ96_PD00339 PF13091 PLD-like domain AMJ96_PD00340 PF03706 AMJ96_PD00340 AMJ96_PD00341 PF03372 Endonuclease/Exonuclease/phosphatase family AMJ96_PD00345 PF01266 FAD dependent oxidoreductase AMJ96_PD00346 PF00005 ABC transporter AMJ96_PD00346 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00347 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJ96_PD00348 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00348 PF13377 Periplasmic binding protein-like domain AMJ96_PD00360 PF02446 4-alpha-glucanotransferase AMJ96_PD00361 PF00128 Alpha amylase, catalytic domain AMJ96_PD00361 PF11941 Domain of unknown function (DUF3459) AMJ96_PD00362 PF00072 Response regulator receiver domain AMJ96_PD00362 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00363 PF00072 Response regulator receiver domain AMJ96_PD00363 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00363 PF13185 GAF domain AMJ96_PD00366 PF01497 Periplasmic binding protein AMJ96_PD00367 PF01032 FecCD transport family AMJ96_PD00368 PF00005 ABC transporter AMJ96_PD00369 PF01037 AsnC family AMJ96_PD00369 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PD00370 PF00155 Aminotransferase class I and II AMJ96_PD00371 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00371 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00371 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00372 PF00128 Alpha amylase, catalytic domain AMJ96_PD00372 PF02806 Alpha amylase, C-terminal all-beta domain AMJ96_PD00372 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMJ96_PD00373 PF00128 Alpha amylase, catalytic domain AMJ96_PD00373 PF16657 AMJ96_PD00373 AMJ96_PD00374 PF00128 Alpha amylase, catalytic domain AMJ96_PD00374 PF11896 Domain of unknown function (DUF3416) AMJ96_PD00376 PF00753 Metallo-beta-lactamase superfamily AMJ96_PD00377 PF01636 Phosphotransferase enzyme family AMJ96_PD00378 PF01544 CorA-like Mg2+ transporter protein AMJ96_PD00379 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMJ96_PD00380 PF05990 Alpha/beta hydrolase of unknown function (DUF900) AMJ96_PD00381 PF00873 AcrB/AcrD/AcrF family AMJ96_PD00382 PF16576 AMJ96_PD00382 AMJ96_PD00383 PF16576 AMJ96_PD00383 AMJ96_PD00384 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00384 PF16859 AMJ96_PD00384 AMJ96_PD00385 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00385 PF13377 Periplasmic binding protein-like domain AMJ96_PD00386 PF12833 Helix-turn-helix domain AMJ96_PD00386 PF14525 AMJ96_PD00386 AMJ96_PD00387 PF00480 ROK family AMJ96_PD00387 PF01047 MarR family AMJ96_PD00388 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00389 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00390 PF00005 ABC transporter AMJ96_PD00391 PF00295 Glycosyl hydrolases family 28 AMJ96_PD00392 PF07470 Glycosyl Hydrolase Family 88 AMJ96_PD00394 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00395 PF11902 AMJ96_PD00395 AMJ96_PD00396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00397 PF13407 Periplasmic binding protein domain AMJ96_PD00398 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00399 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00400 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00401 PF01120 Alpha-L-fucosidase AMJ96_PD00402 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00402 PF13377 Periplasmic binding protein-like domain AMJ96_PD00403 PF05016 Plasmid stabilisation system protein AMJ96_PD00404 PF01402 Ribbon-helix-helix protein, copG family AMJ96_PD00405 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00405 PF07729 FCD domain AMJ96_PD00406 PF09084 NMT1/THI5 like AMJ96_PD00407 PF00005 ABC transporter AMJ96_PD00408 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00409 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00409 PF08521 AMJ96_PD00409 AMJ96_PD00410 PF00072 Response regulator receiver domain AMJ96_PD00410 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00411 PF00857 Isochorismatase family AMJ96_PD00412 PF01965 DJ-1/PfpI family AMJ96_PD00412 PF12833 Helix-turn-helix domain AMJ96_PD00414 PF07940 Heparinase II/III-like protein AMJ96_PD00416 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00417 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00418 PF07470 Glycosyl Hydrolase Family 88 AMJ96_PD00419 PF00005 ABC transporter AMJ96_PD00419 PF03459 TOBE domain AMJ96_PD00420 PF04854 AMJ96_PD00420 AMJ96_PD00421 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00422 PF10022 AMJ96_PD00422 AMJ96_PD00423 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PD00424 PF01850 PIN domain AMJ96_PD00425 PF01230 HIT domain AMJ96_PD00426 PF00072 Response regulator receiver domain AMJ96_PD00426 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00426 PF12860 AMJ96_PD00426 AMJ96_PD00426 PF13188 PAS domain AMJ96_PD00427 PF13328 HD domain AMJ96_PD00428 PF11154 AMJ96_PD00428 AMJ96_PD00432 PF00166 Chaperonin 10 Kd subunit AMJ96_PD00433 PF00118 TCP-1/cpn60 chaperonin family AMJ96_PD00435 PF00571 CBS domain AMJ96_PD00435 PF04982 AMJ96_PD00435 AMJ96_PD00436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00436 PF03466 LysR substrate binding domain AMJ96_PD00439 PF00583 Acetyltransferase (GNAT) family AMJ96_PD00440 PF01546 Peptidase family M20/M25/M40 AMJ96_PD00440 PF07687 Peptidase dimerisation domain AMJ96_PD00441 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00442 PF05899 Protein of unknown function (DUF861) AMJ96_PD00443 PF00171 Aldehyde dehydrogenase family AMJ96_PD00444 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJ96_PD00445 PF00171 Aldehyde dehydrogenase family AMJ96_PD00446 PF01266 FAD dependent oxidoreductase AMJ96_PD00447 PF13419 Haloacid dehalogenase-like hydrolase AMJ96_PD00448 PF00596 Class II Aldolase and Adducin N-terminal domain AMJ96_PD00449 PF00356 Bacterial regulatory proteins, lacI family AMJ96_PD00449 PF13377 Periplasmic binding protein-like domain AMJ96_PD00450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PD00451 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00452 PF07005 Protein of unknown function, DUF1537 AMJ96_PD00452 PF17042 AMJ96_PD00452 AMJ96_PD00453 PF13673 Acetyltransferase (GNAT) domain AMJ96_PD00454 PF00202 Aminotransferase class-III AMJ96_PD00456 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00457 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00458 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00458 PF12911 AMJ96_PD00458 AMJ96_PD00459 PF00005 ABC transporter AMJ96_PD00459 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00461 PF01266 FAD dependent oxidoreductase AMJ96_PD00462 PF01266 FAD dependent oxidoreductase AMJ96_PD00463 PF13510 2Fe-2S iron-sulfur cluster binding domain AMJ96_PD00464 PF04324 BFD-like [2Fe-2S] binding domain AMJ96_PD00464 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PD00465 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJ96_PD00466 PF00291 Pyridoxal-phosphate dependent enzyme AMJ96_PD00467 PF00171 Aldehyde dehydrogenase family AMJ96_PD00470 PF01037 AsnC family AMJ96_PD00470 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PD00471 PF01266 FAD dependent oxidoreductase AMJ96_PD00472 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00472 PF00672 HAMP domain AMJ96_PD00473 PF00171 Aldehyde dehydrogenase family AMJ96_PD00473 PF01619 Proline dehydrogenase AMJ96_PD00473 PF14850 DNA-binding domain of Proline dehydrogenase AMJ96_PD00475 PF01037 AsnC family AMJ96_PD00475 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PD00477 PF01965 DJ-1/PfpI family AMJ96_PD00477 PF12833 Helix-turn-helix domain AMJ96_PD00479 PF01266 FAD dependent oxidoreductase AMJ96_PD00480 PF00171 Aldehyde dehydrogenase family AMJ96_PD00481 PF00701 Dihydrodipicolinate synthetase family AMJ96_PD00482 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00482 PF07729 FCD domain AMJ96_PD00484 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJ96_PD00485 PF00756 Putative esterase AMJ96_PD00486 PF00107 Zinc-binding dehydrogenase AMJ96_PD00486 PF08240 Alcohol dehydrogenase GroES-like domain AMJ96_PD00487 PF16867 AMJ96_PD00487 AMJ96_PD00488 PF00766 Electron transfer flavoprotein FAD-binding domain AMJ96_PD00488 PF01012 Electron transfer flavoprotein domain AMJ96_PD00489 PF01012 Electron transfer flavoprotein domain AMJ96_PD00490 PF16867 AMJ96_PD00490 AMJ96_PD00491 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJ96_PD00491 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJ96_PD00492 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00493 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_PD00493 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJ96_PD00494 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMJ96_PD00495 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00496 PF00005 ABC transporter AMJ96_PD00498 PF12833 Helix-turn-helix domain AMJ96_PD00498 PF14525 AMJ96_PD00498 AMJ96_PD00500 PF00384 Molybdopterin oxidoreductase AMJ96_PD00500 PF01568 Molydopterin dinucleotide binding domain AMJ96_PD00501 PF00990 GGDEF domain AMJ96_PD00501 PF07694 5TMR of 5TMR-LYT AMJ96_PD00501 PF08448 PAS fold AMJ96_PD00501 PF12860 AMJ96_PD00501 AMJ96_PD00502 PF00248 Aldo/keto reductase family AMJ96_PD00503 PF04343 AMJ96_PD00503 AMJ96_PD00504 PF13628 AMJ96_PD00504 AMJ96_PD00506 PF04542 Sigma-70 region 2 AMJ96_PD00506 PF08281 Sigma-70, region 4 AMJ96_PD00509 PF13400 AMJ96_PD00509 AMJ96_PD00510 PF07811 AMJ96_PD00510 AMJ96_PD00511 PF07811 AMJ96_PD00511 AMJ96_PD00514 PF02615 Malate/L-lactate dehydrogenase AMJ96_PD00515 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00515 PF07729 FCD domain AMJ96_PD00516 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJ96_PD00518 PF01381 Helix-turn-helix AMJ96_PD00518 PF07883 Cupin domain AMJ96_PD00519 PF00202 Aminotransferase class-III AMJ96_PD00520 PF12833 Helix-turn-helix domain AMJ96_PD00520 PF14525 AMJ96_PD00520 AMJ96_PD00521 PF01266 FAD dependent oxidoreductase AMJ96_PD00522 PF00842 Alanine racemase, C-terminal domain AMJ96_PD00522 PF01168 Alanine racemase, N-terminal domain AMJ96_PD00523 PF01037 AsnC family AMJ96_PD00523 PF13412 Winged helix-turn-helix DNA-binding AMJ96_PD00524 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00524 PF03472 Autoinducer binding domain AMJ96_PD00525 PF00765 Autoinducer synthetase AMJ96_PD00526 PF07022 Bacteriophage CI repressor helix-turn-helix domain AMJ96_PD00527 PF00723 Glycosyl hydrolases family 15 AMJ96_PD00528 PF00732 GMC oxidoreductase AMJ96_PD00528 PF05199 GMC oxidoreductase AMJ96_PD00529 PF12902 Ferritin-like AMJ96_PD00531 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00532 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00533 PF00753 Metallo-beta-lactamase superfamily AMJ96_PD00534 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00534 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00534 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00535 PF00563 EAL domain AMJ96_PD00535 PF00990 GGDEF domain AMJ96_PD00535 PF08447 PAS fold AMJ96_PD00536 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJ96_PD00536 PF00672 HAMP domain AMJ96_PD00536 PF12729 AMJ96_PD00536 AMJ96_PD00537 PF13379 NMT1-like family AMJ96_PD00538 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00539 PF00005 ABC transporter AMJ96_PD00540 PF01648 4'-phosphopantetheinyl transferase superfamily AMJ96_PD00541 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMJ96_PD00542 PF00501 AMP-binding enzyme AMJ96_PD00542 PF00550 Phosphopantetheine attachment site AMJ96_PD00542 PF00668 Condensation domain AMJ96_PD00542 PF00975 Thioesterase domain AMJ96_PD00542 PF13193 AMP-binding enzyme C-terminal domain AMJ96_PD00543 PF03621 MbtH-like protein AMJ96_PD00544 PF13523 Acetyltransferase (GNAT) domain AMJ96_PD00545 PF01554 MatE AMJ96_PD00546 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJ96_PD00547 PF04542 Sigma-70 region 2 AMJ96_PD00547 PF08281 Sigma-70, region 4 AMJ96_PD00548 PF00583 Acetyltransferase (GNAT) family AMJ96_PD00549 PF01497 Periplasmic binding protein AMJ96_PD00550 PF01032 FecCD transport family AMJ96_PD00551 PF00106 short chain dehydrogenase AMJ96_PD00552 PF12833 Helix-turn-helix domain AMJ96_PD00552 PF12852 Cupin AMJ96_PD00553 PF06276 Ferric iron reductase FhuF-like transporter AMJ96_PD00553 PF11575 AMJ96_PD00553 AMJ96_PD00554 PF00593 TonB dependent receptor AMJ96_PD00554 PF07715 TonB-dependent Receptor Plug Domain AMJ96_PD00555 PF03734 L,D-transpeptidase catalytic domain AMJ96_PD00556 PF00691 OmpA family AMJ96_PD00557 PF00011 Hsp20/alpha crystallin family AMJ96_PD00558 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJ96_PD00558 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMJ96_PD00558 PF07691 PA14 domain AMJ96_PD00558 PF14310 Fibronectin type III-like domain AMJ96_PD00559 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00559 PF13977 Bacterial transcriptional repressor AMJ96_PD00560 PF12146 Putative lysophospholipase AMJ96_PD00561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJ96_PD00561 PF03466 LysR substrate binding domain AMJ96_PD00563 PF00072 Response regulator receiver domain AMJ96_PD00564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00564 PF07730 Histidine kinase AMJ96_PD00565 PF13407 Periplasmic binding protein domain AMJ96_PD00566 PF00005 ABC transporter AMJ96_PD00567 PF02653 AMJ96_PD00567 AMJ96_PD00568 PF02653 AMJ96_PD00568 AMJ96_PD00569 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_PD00570 PF01074 Glycosyl hydrolases family 38 N-terminal domain AMJ96_PD00570 PF07748 Glycosyl hydrolases family 38 C-terminal domain AMJ96_PD00570 PF09261 Alpha mannosidase, middle domain AMJ96_PD00572 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJ96_PD00573 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJ96_PD00574 PF00892 EamA-like transporter family AMJ96_PD00575 PF07336 Protein of unknown function (DUF1470) AMJ96_PD00575 PF11706 CGNR zinc finger AMJ96_PD00576 PF00069 Protein kinase domain AMJ96_PD00576 PF00512 His Kinase A (phospho-acceptor) domain AMJ96_PD00576 PF01590 GAF domain AMJ96_PD00576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJ96_PD00576 PF13191 AAA ATPase domain AMJ96_PD00576 PF13426 PAS domain AMJ96_PD00577 PF00072 Response regulator receiver domain AMJ96_PD00577 PF00196 Bacterial regulatory proteins, luxR family AMJ96_PD00579 PF13460 NADH(P)-binding AMJ96_PD00580 PF07927 YcfA-like protein AMJ96_PD00581 PF05534 AMJ96_PD00581 AMJ96_PD00583 PF00487 AMJ96_PD00583 AMJ96_PD00585 PF00313 'Cold-shock' DNA-binding domain AMJ96_PD00588 PF06169 Protein of unknown function (DUF982) AMJ96_PD00589 PF02530 AMJ96_PD00589 AMJ96_PD00590 PF12833 Helix-turn-helix domain AMJ96_PD00591 PF02233 NAD(P) transhydrogenase beta subunit AMJ96_PD00592 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJ96_PD00592 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJ96_PD00592 PF12769 Domain of unknown function (DUF3814) AMJ96_PD00593 PF00171 Aldehyde dehydrogenase family AMJ96_PD00594 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00594 PF07729 FCD domain AMJ96_PD00595 PF01263 Aldose 1-epimerase AMJ96_PD00596 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00596 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00597 PF01370 NAD dependent epimerase/dehydratase family AMJ96_PD00598 PF03928 Domain of unknown function (DUF336) AMJ96_PD00599 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00599 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00600 PF13378 Enolase C-terminal domain-like AMJ96_PD00601 PF08450 SMP-30/Gluconolaconase/LRE-like region AMJ96_PD00602 PF00248 Aldo/keto reductase family AMJ96_PD00603 PF00005 ABC transporter AMJ96_PD00603 PF08402 TOBE domain AMJ96_PD00604 PF01547 Bacterial extracellular solute-binding protein AMJ96_PD00605 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00606 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00608 PF03737 Demethylmenaquinone methyltransferase AMJ96_PD00609 PF07729 FCD domain AMJ96_PD00610 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00610 PF07729 FCD domain AMJ96_PD00611 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJ96_PD00611 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJ96_PD00612 PF00005 ABC transporter AMJ96_PD00613 PF00005 ABC transporter AMJ96_PD00614 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00615 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00616 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00617 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJ96_PD00618 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMJ96_PD00618 PF13378 Enolase C-terminal domain-like AMJ96_PD00619 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00619 PF07729 FCD domain AMJ96_PD00620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJ96_PD00621 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00622 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00622 PF12911 AMJ96_PD00622 AMJ96_PD00623 PF00005 ABC transporter AMJ96_PD00623 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJ96_PD00625 PF02635 DsrE/DsrF-like family AMJ96_PD00626 PF14534 Domain of unknown function (DUF4440) AMJ96_PD00627 PF00440 Bacterial regulatory proteins, tetR family AMJ96_PD00628 PF00175 Oxidoreductase NAD-binding domain AMJ96_PD00628 PF01243 Pyridoxamine 5'-phosphate oxidase AMJ96_PD00629 PF13610 AMJ96_PD00629 AMJ96_PD00631 PF01527 Transposase AMJ96_PD00632 PF05717 AMJ96_PD00632 AMJ96_PD00633 PF03050 AMJ96_PD00633 AMJ96_PD00633 PF13005 AMJ96_PD00633 AMJ96_PD00633 PF13007 AMJ96_PD00633 AMJ96_PD00633 PF13817 AMJ96_PD00633 AMJ96_PD00638 PF06114 Domain of unknown function (DUF955) AMJ96_PD00638 PF13560 Helix-turn-helix domain AMJ96_PD00642 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00643 PF13561 Enoyl-(Acyl carrier protein) reductase AMJ96_PD00644 PF00205 Thiamine pyrophosphate enzyme, central domain AMJ96_PD00644 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJ96_PD00644 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJ96_PD00645 PF00202 Aminotransferase class-III AMJ96_PD00646 PF00392 Bacterial regulatory proteins, gntR family AMJ96_PD00646 PF07729 FCD domain AMJ96_PD00647 PF00005 ABC transporter AMJ96_PD00647 PF08402 TOBE domain AMJ96_PD00648 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00649 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00650 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00651 PF00155 Aminotransferase class I and II AMJ96_PD00652 PF00486 Transcriptional regulatory protein, C terminal AMJ96_PD00654 PF03389 MobA/MobL family AMJ96_PD00654 PF13604 AAA domain AMJ96_PD00655 PF06412 AMJ96_PD00655 AMJ96_PD00656 PF02534 Type IV secretory system Conjugative DNA transfer AMJ96_PD00658 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMJ96_PD00661 PF05284 AMJ96_PD00661 AMJ96_PD00662 PF05406 WGR domain AMJ96_PD00663 PF09722 AMJ96_PD00663 AMJ96_PD00664 PF08808 AMJ96_PD00664 AMJ96_PD00665 PF10686 AMJ96_PD00665 AMJ96_PD00666 PF13362 Toprim domain AMJ96_PD00668 PF06666 AMJ96_PD00668 AMJ96_PD00669 PF01850 PIN domain AMJ96_PD00671 PF00437 Type II/IV secretion system protein AMJ96_PD00672 PF03743 Bacterial conjugation TrbI-like protein AMJ96_PD00673 PF03524 Conjugal transfer protein AMJ96_PD00674 PF04335 VirB8 protein AMJ96_PD00676 PF04610 AMJ96_PD00676 AMJ96_PD00678 PF07996 Type IV secretion system proteins AMJ96_PD00679 PF03135 AMJ96_PD00679 AMJ96_PD00680 PF05101 AMJ96_PD00680 AMJ96_PD00681 PF04956 AMJ96_PD00681 AMJ96_PD00682 PF01464 Transglycosylase SLT domain AMJ96_PD00686 PF02195 ParB-like nuclease domain AMJ96_PD00688 PF00578 AhpC/TSA family AMJ96_PD00690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJ96_PD00690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMJ96_PD00691 PF13416 Bacterial extracellular solute-binding protein AMJ96_PD00692 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00693 PF00528 Binding-protein-dependent transport system inner membrane component AMJ96_PD00694 PF00480 ROK family AMJ96_PD00694 PF01047 MarR family AMJ96_PD00695 PF01261 Xylose isomerase-like TIM barrel AMJ96_PD00695 PF07582 AP endonuclease family 2 C terminus AMJ96_PD00696 PF00005 ABC transporter AMJ96_PD00696 PF08402 TOBE domain AMJ96_PD00697 PF13614 AAA domain AMJ96_PD00698 PF02195 ParB-like nuclease domain AMJ96_PD00698 PF07506 AMJ96_PD00698 AMJ96_PD00699 PF03428 AMJ96_PD00699 AMJ96_PD00699 PF11800 AMJ96_PD00699